Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153200 | KEH34363.1 | 62.671 | 292 | 72 | 8 | 37 | 305 | 9 | 286 | 1.12e-101 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153200 | A0A072UZ52 | 62.671 | 292 | 72 | 8 | 37 | 305 | 9 | 286 | 5.35e-102 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa0153200 | 0.927582 | 9.611031e-92 | -8.615850e-47 |
| Msa0068630 | Msa0153200 | 0.873644 | 1.252821e-67 | -8.615850e-47 |
| Msa0071340 | Msa0153200 | 0.870156 | 1.805345e-66 | -8.615850e-47 |
| Msa0153200 | Msa0162580 | 0.881612 | 2.077266e-70 | -8.615850e-47 |
| Msa0153200 | Msa0211680 | 0.895517 | 8.894857e-76 | -8.615850e-47 |
| Msa0153200 | Msa0280450 | 0.836329 | 9.973478e-57 | -8.615850e-47 |
| Msa0153200 | Msa0291600 | 0.900327 | 8.182165e-78 | -8.615850e-47 |
| Msa0153200 | Msa0343610 | 0.804053 | 2.598568e-49 | -8.615850e-47 |
| Msa0153200 | Msa0353690 | 0.819325 | 1.232262e-52 | -8.615850e-47 |
| Msa0153200 | Msa0456200 | 0.802447 | 5.585439e-49 | -8.615850e-47 |
| Msa0153200 | Msa0458420 | 0.807941 | 3.953047e-50 | -8.615850e-47 |
| Msa0153200 | Msa0533430 | 0.809930 | 1.483400e-50 | -8.615850e-47 |
| Msa0153200 | Msa0548060 | 0.813350 | 2.676075e-51 | -8.615850e-47 |
| Msa0153200 | Msa0675510 | 0.919722 | 3.153254e-87 | -8.615850e-47 |
| Msa0153200 | Msa0682360 | 0.802374 | 5.782908e-49 | -8.615850e-47 |
| Msa0153200 | Msa0722510 | 0.812885 | 3.384263e-51 | -8.615850e-47 |
| Msa0153200 | Msa0815320 | 0.807943 | 3.949052e-50 | -8.615850e-47 |
| Msa0153200 | Msa0818010 | 0.814380 | 1.586966e-51 | -8.615850e-47 |
| Msa0153200 | Msa0818030 | 0.813604 | 2.352756e-51 | -8.615850e-47 |
| Msa0153200 | Msa0858360 | 0.833097 | 6.484084e-56 | -8.615850e-47 |
| Msa0153200 | Msa0884920 | 0.859103 | 5.213027e-63 | -8.615850e-47 |
| Msa0153200 | Msa0902020 | 0.846447 | 2.159622e-59 | -8.615850e-47 |
| Msa0153200 | Msa0912500 | 0.842429 | 2.599872e-58 | -8.615850e-47 |
| Msa0153200 | Msa0951330 | 0.816369 | 5.730680e-52 | -8.615850e-47 |
| Msa0153200 | Msa0957860 | 0.811803 | 5.830765e-51 | -8.615850e-47 |
| Msa0153200 | Msa0957960 | 0.812073 | 5.093815e-51 | -8.615850e-47 |
| Msa0153200 | Msa0962360 | 0.800653 | 1.302846e-48 | -8.615850e-47 |
| Msa0153200 | Msa0963310 | 0.824760 | 6.777370e-54 | -8.615850e-47 |
| Msa0153200 | Msa0964180 | 0.807003 | 6.250319e-50 | -8.615850e-47 |
| Msa0153200 | Msa1006250 | 0.834539 | 2.826372e-56 | -8.615850e-47 |
| Msa0153200 | Msa1006390 | 0.814746 | 1.316603e-51 | -8.615850e-47 |
| Msa0153200 | Msa1021750 | 0.832810 | 7.642586e-56 | -8.615850e-47 |
| Msa0153200 | Msa1048540 | 0.812524 | 4.059957e-51 | -8.615850e-47 |
| Msa0153200 | Msa1092990 | 0.808733 | 2.678928e-50 | -8.615850e-47 |
| Msa0153200 | Msa1100180 | 0.813177 | 2.920310e-51 | -8.615850e-47 |
| Msa0153200 | Msa1131820 | 0.834347 | 3.159032e-56 | -8.615850e-47 |
| Msa0153200 | Msa1178650 | 0.820887 | 5.409603e-53 | -8.615850e-47 |
| Msa0153200 | Msa1178660 | 0.806744 | 7.088263e-50 | -8.615850e-47 |
| Msa0153200 | Msa1182730 | 0.851585 | 8.064881e-61 | -8.615850e-47 |
| Msa0153200 | Msa1187060 | 0.827447 | 1.556477e-54 | -8.615850e-47 |
| Msa0153200 | Msa1191210 | 0.806771 | 6.998112e-50 | -8.615850e-47 |
| Msa0153200 | Msa1232060 | 0.832635 | 8.448583e-56 | -8.615850e-47 |
| Msa0153200 | Msa1288000 | 0.843336 | 1.492189e-58 | -8.615850e-47 |
| Msa0153200 | Msa1310530 | 0.831450 | 1.657995e-55 | -8.615850e-47 |
| Msa0153200 | Msa1347360 | 0.852989 | 3.213808e-61 | -8.615850e-47 |
| Msa0153200 | Msa1359820 | 0.830141 | 3.471574e-55 | -8.615850e-47 |
| Msa0153200 | Msa1423990 | 0.843451 | 1.390429e-58 | -8.615850e-47 |
| Msa0153200 | Msa1463140 | 0.985468 | 1.161811e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153200 | MtrunA17_Chr7g0243381 | 36.822 | 258 | 98 | 11 | 7 | 256 | 22 | 222 | 3.46e-29 | 114 |
| Msa0153200 | MtrunA17_Chr1g0178241 | 43.151 | 146 | 71 | 4 | 124 | 258 | 480 | 624 | 4.52e-22 | 97.8 |
| Msa0153200 | MtrunA17_Chr1g0170041 | 39.355 | 155 | 61 | 3 | 198 | 319 | 8 | 162 | 2.70e-21 | 90.1 |
| Msa0153200 | MtrunA17_Chr3g0108131 | 36.601 | 153 | 66 | 5 | 183 | 323 | 89 | 222 | 1.31e-15 | 75.5 |
| Msa0153200 | MtrunA17_Chr4g0009121 | 36.029 | 136 | 69 | 3 | 101 | 236 | 16 | 133 | 7.20e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 76 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCATCTATTGGAATATT+AGG | 0.202562 | 1_4:-16370166 | None:intergenic |
| CAGGCAGCAGACAAATTCTT+AGG | 0.259409 | 1_4:+16370519 | None:intergenic |
| GTAAAATCTTGAGTAAGTTT+TGG | 0.283477 | 1_4:-16370485 | Msa0153200:CDS |
| TACTCAAAGCACTAACTTAG+AGG | 0.290108 | 1_4:-16370700 | Msa0153200:CDS |
| TAAGACTCTTATTGACATTC+AGG | 0.292994 | 1_4:-16371049 | Msa0153200:CDS |
| GTGCATCTATTGGAATATTA+GGG | 0.295334 | 1_4:-16370165 | None:intergenic |
| ACTATAATGGATATGCAAAT+TGG | 0.307471 | 1_4:-16370768 | Msa0153200:CDS |
| TTCTTTGTGCCTTTCCTGCC+TGG | 0.315602 | 1_4:+16370276 | None:intergenic |
| AGGGGATTGGCCACCACATT+TGG | 0.331333 | 1_4:+16370738 | None:intergenic |
| CACTTCATGCTTGGTCCTTA+AGG | 0.334146 | 1_4:+16370185 | None:intergenic |
| AGTGGCTCTGAACTGGTAAC+AGG | 0.341475 | 1_4:-16370825 | Msa0153200:CDS |
| AGAGTGAGTTTCCTTCAAAT+TGG | 0.344618 | 1_4:+16370347 | None:intergenic |
| ATCTCAAAATCATTGTATTC+AGG | 0.352175 | 1_4:+16370972 | None:intergenic |
| GAAGATTAGTGTTCGCCTTA+AGG | 0.363673 | 1_4:-16370200 | Msa0153200:CDS |
| GGAATCCACACCCACTATAA+TGG | 0.374927 | 1_4:-16370781 | Msa0153200:CDS |
| AATTTGCATATCCATTATAG+TGG | 0.382257 | 1_4:+16370770 | None:intergenic |
| GGTGTGGATTCCTCATCATT+TGG | 0.391401 | 1_4:+16370792 | None:intergenic |
| CTGCAGCATTCTCATGAAGA+TGG | 0.397971 | 1_4:-16370309 | Msa0153200:CDS |
| CAAGCATGAAGTGCATCTAT+TGG | 0.425360 | 1_4:-16370175 | Msa0153200:CDS |
| TTGCATGATCTTCATTGTAC+TGG | 0.430802 | 1_4:+16370916 | None:intergenic |
| CATATCCATTATAGTGGGTG+TGG | 0.442002 | 1_4:+16370776 | None:intergenic |
| CAATAGATGCACTTCATGCT+TGG | 0.444927 | 1_4:+16370176 | None:intergenic |
| TCATTTGAATTGCTTGAAAG+TGG | 0.457712 | 1_4:-16370843 | Msa0153200:CDS |
| CTGTGTCACTTGGTGATGCT+AGG | 0.458092 | 1_4:-16370650 | Msa0153200:CDS |
| GTTCTCCTTCCCTAGGGGAT+TGG | 0.461064 | 1_4:+16370725 | None:intergenic |
| AATCTCATCATTAGTAGTGA+TGG | 0.464578 | 1_4:+16370581 | None:intergenic |
| GAGTAAAGTTCTCCTTCCCT+AGG | 0.472040 | 1_4:+16370718 | None:intergenic |
| GCTTGAAAGTGGCTCTGAAC+TGG | 0.484212 | 1_4:-16370832 | Msa0153200:CDS |
| TCTGCTGCCTGTTTGAAAGA+TGG | 0.493890 | 1_4:-16370507 | Msa0153200:CDS |
| TGGTACTCTAGCCAATTTGA+AGG | 0.506229 | 1_4:-16370358 | Msa0153200:CDS |
| TTTATTAAACCAGGCAGGAA+AGG | 0.509370 | 1_4:-16370285 | Msa0153200:CDS |
| GTAGCATTGGGCAATTTACC+AGG | 0.509651 | 1_4:+16370675 | None:intergenic |
| GAGAATGCTGCAGAAGGTAC+TGG | 0.516616 | 1_4:+16370319 | None:intergenic |
| GTCATCAGCTGAAGCAAAAG+TGG | 0.518741 | 1_4:+16371023 | None:intergenic |
| TTTAGGGCAAGACAAGAGAA+AGG | 0.519683 | 1_4:-16370559 | Msa0153200:CDS |
| TAATTAATTCACCTTTCTCA+AGG | 0.520065 | 1_4:+16371001 | None:intergenic |
| AATGCTACTGCTGTGTCACT+TGG | 0.522950 | 1_4:-16370660 | Msa0153200:CDS |
| AGTAAAGTTCTCCTTCCCTA+GGG | 0.534611 | 1_4:+16370719 | None:intergenic |
| AGCACTAACTTAGAGGATCC+TGG | 0.534663 | 1_4:-16370693 | Msa0153200:CDS |
| AGTGACACAGCAGTAGCATT+GGG | 0.536599 | 1_4:+16370663 | None:intergenic |
| AGAAAGGATAACTTCACTGC+TGG | 0.536751 | 1_4:-16370543 | Msa0153200:CDS |
| GAAAGCTGCTAAACCTCAGA+TGG | 0.539304 | 1_4:-16370256 | Msa0153200:CDS |
| AGGCAGCAGACAAATTCTTA+GGG | 0.540266 | 1_4:+16370520 | None:intergenic |
| ATCTCATCATTAGTAGTGAT+GGG | 0.544479 | 1_4:+16370582 | None:intergenic |
| AAGTGACACAGCAGTAGCAT+TGG | 0.545658 | 1_4:+16370662 | None:intergenic |
| AATGTGGTGGCCAATCCCCT+AGG | 0.548434 | 1_4:-16370735 | Msa0153200:CDS |
| GAGCAACTGTCAAAGTTCAC+TGG | 0.554524 | 1_4:-16370400 | Msa0153200:CDS |
| TCAGCTGATGACCTTGAGAA+AGG | 0.556543 | 1_4:-16371012 | Msa0153200:intron |
| TGTGTCACTTGGTGATGCTA+GGG | 0.557943 | 1_4:-16370649 | Msa0153200:CDS |
| ATGTCAATAAGAGTCTTAGC+AGG | 0.566819 | 1_4:+16371054 | None:intergenic |
| CACTTCTGTACCTAATGCAA+TGG | 0.567719 | 1_4:-16370946 | Msa0153200:CDS |
| AGTTGCTCTTGTGAGCCTCA+TGG | 0.568187 | 1_4:+16370415 | None:intergenic |
| GACAATACTGTTACCATCTG+AGG | 0.578982 | 1_4:+16370243 | None:intergenic |
| ATTTGCATATCCATTATAGT+GGG | 0.582568 | 1_4:+16370771 | None:intergenic |
| GTAGTGATGGGAGAAATGAT+AGG | 0.588469 | 1_4:+16370594 | None:intergenic |
| CTTCATGAGAATGCTGCAGA+AGG | 0.588696 | 1_4:+16370313 | None:intergenic |
| CCTCACCACATTGTAGCAGT+TGG | 0.594959 | 1_4:-16371084 | Msa0153200:CDS |
| GTGGCTCTGAACTGGTAACA+GGG | 0.596218 | 1_4:-16370824 | Msa0153200:CDS |
| AACAGTAGCATCAGCAACTG+TGG | 0.605266 | 1_4:+16371119 | None:intergenic |
| GACTCTTATTGACATTCAGG+AGG | 0.614109 | 1_4:-16371046 | Msa0153200:CDS |
| CTCTGAACTGGTAACAGGGG+AGG | 0.618737 | 1_4:-16370820 | Msa0153200:CDS |
| AACCACTAAAAGAGTTCACA+AGG | 0.631197 | 1_4:-16371205 | Msa0153200:CDS |
| ATGTGGTGGCCAATCCCCTA+GGG | 0.634542 | 1_4:-16370734 | Msa0153200:CDS |
| GTACAATGAAGATCATGCAA+TGG | 0.640941 | 1_4:-16370913 | Msa0153200:CDS |
| GGAGGCTAAACCAAATGATG+AGG | 0.641472 | 1_4:-16370802 | Msa0153200:CDS |
| GCATCAGCAACTGTGGACAC+AGG | 0.644340 | 1_4:+16371126 | None:intergenic |
| GAGCATGATATAGACACAGA+TGG | 0.650912 | 1_4:-16370378 | Msa0153200:CDS |
| GGTGGCCAATCCCCTAGGGA+AGG | 0.651336 | 1_4:-16370730 | Msa0153200:CDS |
| TGATGCTACTGATAGCACAT+TGG | 0.652116 | 1_4:-16370448 | Msa0153200:CDS |
| TTGCATTAGGTACAGAAGTG+AGG | 0.653763 | 1_4:+16370949 | None:intergenic |
| TGCATCTATTGGAATATTAG+GGG | 0.660845 | 1_4:-16370164 | None:intergenic |
| GTAAAGTTCTCCTTCCCTAG+GGG | 0.674681 | 1_4:+16370720 | None:intergenic |
| TGGCTCTGAACTGGTAACAG+GGG | 0.677736 | 1_4:-16370823 | Msa0153200:CDS |
| TATTACCAACTGCTACAATG+TGG | 0.683737 | 1_4:+16371079 | None:intergenic |
| CCAACTGCTACAATGTGGTG+AGG | 0.690812 | 1_4:+16371084 | None:intergenic |
| ATTGGAACATACTGACCATG+AGG | 0.691070 | 1_4:-16370430 | Msa0153200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTCAAATTATCATGAAAAAT+AGG | + | chr1_4:16370774-16370793 | None:intergenic | 20.0% |
| !!! | TAAAATCTTGAGTAAGTTTT+GGG | - | chr1_4:16370911-16370930 | Msa0153200:CDS | 20.0% |
| !! | GTCAAATTATCATGAAAAAT+AGG | + | chr1_4:16370774-16370793 | None:intergenic | 20.0% |
| !!! | TAAAATCTTGAGTAAGTTTT+GGG | - | chr1_4:16370911-16370930 | Msa0153200:CDS | 20.0% |
| ! | TAATTAATTCACCTTTCTCA+AGG | + | chr1_4:16370397-16370416 | None:intergenic | 25.0% |
| ! | ATCTCAAAATCATTGTATTC+AGG | + | chr1_4:16370426-16370445 | None:intergenic | 25.0% |
| ! | ATTTGCATATCCATTATAGT+GGG | + | chr1_4:16370627-16370646 | None:intergenic | 25.0% |
| ! | AATTTGCATATCCATTATAG+TGG | + | chr1_4:16370628-16370647 | None:intergenic | 25.0% |
| !!! | ACTATAATGGATATGCAAAT+TGG | - | chr1_4:16370627-16370646 | Msa0153200:CDS | 25.0% |
| ! | AATTGGAAAAAATCCAAATG+TGG | - | chr1_4:16370644-16370663 | Msa0153200:CDS | 25.0% |
| !! | ACTACTAATGATGAGATTTT+AGG | - | chr1_4:16370819-16370838 | Msa0153200:CDS | 25.0% |
| !! | CTACTAATGATGAGATTTTA+GGG | - | chr1_4:16370820-16370839 | Msa0153200:CDS | 25.0% |
| !! | GTAAAATCTTGAGTAAGTTT+TGG | - | chr1_4:16370910-16370929 | Msa0153200:CDS | 25.0% |
| !! | AAAATCTTGAGTAAGTTTTG+GGG | - | chr1_4:16370912-16370931 | Msa0153200:CDS | 25.0% |
| ! | TAATTAATTCACCTTTCTCA+AGG | + | chr1_4:16370397-16370416 | None:intergenic | 25.0% |
| ! | ATCTCAAAATCATTGTATTC+AGG | + | chr1_4:16370426-16370445 | None:intergenic | 25.0% |
| ! | ATTTGCATATCCATTATAGT+GGG | + | chr1_4:16370627-16370646 | None:intergenic | 25.0% |
| ! | AATTTGCATATCCATTATAG+TGG | + | chr1_4:16370628-16370647 | None:intergenic | 25.0% |
| !!! | ACTATAATGGATATGCAAAT+TGG | - | chr1_4:16370627-16370646 | Msa0153200:CDS | 25.0% |
| ! | AATTGGAAAAAATCCAAATG+TGG | - | chr1_4:16370644-16370663 | Msa0153200:CDS | 25.0% |
| !! | ACTACTAATGATGAGATTTT+AGG | - | chr1_4:16370819-16370838 | Msa0153200:CDS | 25.0% |
| !! | CTACTAATGATGAGATTTTA+GGG | - | chr1_4:16370820-16370839 | Msa0153200:CDS | 25.0% |
| !! | GTAAAATCTTGAGTAAGTTT+TGG | - | chr1_4:16370910-16370929 | Msa0153200:CDS | 25.0% |
| !! | AAAATCTTGAGTAAGTTTTG+GGG | - | chr1_4:16370912-16370931 | Msa0153200:CDS | 25.0% |
| ! | AGCTTAGTACTTTTCTTGTT+AGG | + | chr1_4:16370248-16370267 | None:intergenic | 30.0% |
| TAAGACTCTTATTGACATTC+AGG | - | chr1_4:16370346-16370365 | Msa0153200:CDS | 30.0% | |
| TCATTTGAATTGCTTGAAAG+TGG | - | chr1_4:16370552-16370571 | Msa0153200:CDS | 30.0% | |
| ATCTCATCATTAGTAGTGAT+GGG | + | chr1_4:16370816-16370835 | None:intergenic | 30.0% | |
| AATCTCATCATTAGTAGTGA+TGG | + | chr1_4:16370817-16370836 | None:intergenic | 30.0% | |
| ! | GATTTTACCATCTTTCAAAC+AGG | + | chr1_4:16370898-16370917 | None:intergenic | 30.0% |
| !! | AAATCTTGAGTAAGTTTTGG+GGG | - | chr1_4:16370913-16370932 | Msa0153200:CDS | 30.0% |
| !!! | GAAGATGGTTTTATTAAACC+AGG | - | chr1_4:16371101-16371120 | Msa0153200:CDS | 30.0% |
| ! | AGCTTAGTACTTTTCTTGTT+AGG | + | chr1_4:16370248-16370267 | None:intergenic | 30.0% |
| TAAGACTCTTATTGACATTC+AGG | - | chr1_4:16370346-16370365 | Msa0153200:CDS | 30.0% | |
| TCATTTGAATTGCTTGAAAG+TGG | - | chr1_4:16370552-16370571 | Msa0153200:CDS | 30.0% | |
| ATCTCATCATTAGTAGTGAT+GGG | + | chr1_4:16370816-16370835 | None:intergenic | 30.0% | |
| AATCTCATCATTAGTAGTGA+TGG | + | chr1_4:16370817-16370836 | None:intergenic | 30.0% | |
| ! | GATTTTACCATCTTTCAAAC+AGG | + | chr1_4:16370898-16370917 | None:intergenic | 30.0% |
| !! | AAATCTTGAGTAAGTTTTGG+GGG | - | chr1_4:16370913-16370932 | Msa0153200:CDS | 30.0% |
| !!! | GAAGATGGTTTTATTAAACC+AGG | - | chr1_4:16371101-16371120 | Msa0153200:CDS | 30.0% |
| ! | TTGTGAACTCTTTTAGTGGT+TGG | + | chr1_4:16370191-16370210 | None:intergenic | 35.0% |
| AACCACTAAAAGAGTTCACA+AGG | - | chr1_4:16370190-16370209 | Msa0153200:CDS | 35.0% | |
| TATTACCAACTGCTACAATG+TGG | + | chr1_4:16370319-16370338 | None:intergenic | 35.0% | |
| ATGTCAATAAGAGTCTTAGC+AGG | + | chr1_4:16370344-16370363 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGAACCATTGCATT+AGG | + | chr1_4:16370462-16370481 | None:intergenic | 35.0% |
| TTGCATGATCTTCATTGTAC+TGG | + | chr1_4:16370482-16370501 | None:intergenic | 35.0% | |
| GTACAATGAAGATCATGCAA+TGG | - | chr1_4:16370482-16370501 | Msa0153200:CDS | 35.0% | |
| TGGAAAAAATCCAAATGTGG+TGG | - | chr1_4:16370647-16370666 | Msa0153200:CDS | 35.0% | |
| ! | TACTCAAAGCACTAACTTAG+AGG | - | chr1_4:16370695-16370714 | Msa0153200:CDS | 35.0% |
| !!! | AATCTTGAGTAAGTTTTGGG+GGG | - | chr1_4:16370914-16370933 | Msa0153200:CDS | 35.0% |
| AGAGTGAGTTTCCTTCAAAT+TGG | + | chr1_4:16371051-16371070 | None:intergenic | 35.0% | |
| !!! | ATGGTTTTATTAAACCAGGC+AGG | - | chr1_4:16371105-16371124 | Msa0153200:CDS | 35.0% |
| TTTATTAAACCAGGCAGGAA+AGG | - | chr1_4:16371110-16371129 | Msa0153200:CDS | 35.0% | |
| ! | TTGTGAACTCTTTTAGTGGT+TGG | + | chr1_4:16370191-16370210 | None:intergenic | 35.0% |
| AACCACTAAAAGAGTTCACA+AGG | - | chr1_4:16370190-16370209 | Msa0153200:CDS | 35.0% | |
| TATTACCAACTGCTACAATG+TGG | + | chr1_4:16370319-16370338 | None:intergenic | 35.0% | |
| ATGTCAATAAGAGTCTTAGC+AGG | + | chr1_4:16370344-16370363 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGAACCATTGCATT+AGG | + | chr1_4:16370462-16370481 | None:intergenic | 35.0% |
| TTGCATGATCTTCATTGTAC+TGG | + | chr1_4:16370482-16370501 | None:intergenic | 35.0% | |
| GTACAATGAAGATCATGCAA+TGG | - | chr1_4:16370482-16370501 | Msa0153200:CDS | 35.0% | |
| TGGAAAAAATCCAAATGTGG+TGG | - | chr1_4:16370647-16370666 | Msa0153200:CDS | 35.0% | |
| ! | TACTCAAAGCACTAACTTAG+AGG | - | chr1_4:16370695-16370714 | Msa0153200:CDS | 35.0% |
| !!! | AATCTTGAGTAAGTTTTGGG+GGG | - | chr1_4:16370914-16370933 | Msa0153200:CDS | 35.0% |
| AGAGTGAGTTTCCTTCAAAT+TGG | + | chr1_4:16371051-16371070 | None:intergenic | 35.0% | |
| !!! | ATGGTTTTATTAAACCAGGC+AGG | - | chr1_4:16371105-16371124 | Msa0153200:CDS | 35.0% |
| TTTATTAAACCAGGCAGGAA+AGG | - | chr1_4:16371110-16371129 | Msa0153200:CDS | 35.0% | |
| ! | CACCTTGTGAACTCTTTTAG+TGG | + | chr1_4:16370195-16370214 | None:intergenic | 40.0% |
| GACTCTTATTGACATTCAGG+AGG | - | chr1_4:16370349-16370368 | Msa0153200:CDS | 40.0% | |
| TTGCATTAGGTACAGAAGTG+AGG | + | chr1_4:16370449-16370468 | None:intergenic | 40.0% | |
| CACTTCTGTACCTAATGCAA+TGG | - | chr1_4:16370449-16370468 | Msa0153200:CDS | 40.0% | |
| !! | CATATCCATTATAGTGGGTG+TGG | + | chr1_4:16370622-16370641 | None:intergenic | 40.0% |
| AGTAAAGTTCTCCTTCCCTA+GGG | + | chr1_4:16370679-16370698 | None:intergenic | 40.0% | |
| ! | GTAGTGATGGGAGAAATGAT+AGG | + | chr1_4:16370804-16370823 | None:intergenic | 40.0% |
| ! | TTTAGGGCAAGACAAGAGAA+AGG | - | chr1_4:16370836-16370855 | Msa0153200:CDS | 40.0% |
| AGAAAGGATAACTTCACTGC+TGG | - | chr1_4:16370852-16370871 | Msa0153200:CDS | 40.0% | |
| AGGCAGCAGACAAATTCTTA+GGG | + | chr1_4:16370878-16370897 | None:intergenic | 40.0% | |
| TGATGCTACTGATAGCACAT+TGG | - | chr1_4:16370947-16370966 | Msa0153200:CDS | 40.0% | |
| ATTGGAACATACTGACCATG+AGG | - | chr1_4:16370965-16370984 | Msa0153200:CDS | 40.0% | |
| GAGCATGATATAGACACAGA+TGG | - | chr1_4:16371017-16371036 | Msa0153200:CDS | 40.0% | |
| TGGTACTCTAGCCAATTTGA+AGG | - | chr1_4:16371037-16371056 | Msa0153200:CDS | 40.0% | |
| GACAATACTGTTACCATCTG+AGG | + | chr1_4:16371155-16371174 | None:intergenic | 40.0% | |
| GAAGATTAGTGTTCGCCTTA+AGG | - | chr1_4:16371195-16371214 | Msa0153200:CDS | 40.0% | |
| CAATAGATGCACTTCATGCT+TGG | + | chr1_4:16371222-16371241 | None:intergenic | 40.0% | |
| CAAGCATGAAGTGCATCTAT+TGG | - | chr1_4:16371220-16371239 | Msa0153200:CDS | 40.0% | |
| ! | CACCTTGTGAACTCTTTTAG+TGG | + | chr1_4:16370195-16370214 | None:intergenic | 40.0% |
| GACTCTTATTGACATTCAGG+AGG | - | chr1_4:16370349-16370368 | Msa0153200:CDS | 40.0% | |
| TTGCATTAGGTACAGAAGTG+AGG | + | chr1_4:16370449-16370468 | None:intergenic | 40.0% | |
| CACTTCTGTACCTAATGCAA+TGG | - | chr1_4:16370449-16370468 | Msa0153200:CDS | 40.0% | |
| !! | CATATCCATTATAGTGGGTG+TGG | + | chr1_4:16370622-16370641 | None:intergenic | 40.0% |
| AGTAAAGTTCTCCTTCCCTA+GGG | + | chr1_4:16370679-16370698 | None:intergenic | 40.0% | |
| ! | GTAGTGATGGGAGAAATGAT+AGG | + | chr1_4:16370804-16370823 | None:intergenic | 40.0% |
| ! | TTTAGGGCAAGACAAGAGAA+AGG | - | chr1_4:16370836-16370855 | Msa0153200:CDS | 40.0% |
| AGAAAGGATAACTTCACTGC+TGG | - | chr1_4:16370852-16370871 | Msa0153200:CDS | 40.0% | |
| AGGCAGCAGACAAATTCTTA+GGG | + | chr1_4:16370878-16370897 | None:intergenic | 40.0% | |
| TGATGCTACTGATAGCACAT+TGG | - | chr1_4:16370947-16370966 | Msa0153200:CDS | 40.0% | |
| ATTGGAACATACTGACCATG+AGG | - | chr1_4:16370965-16370984 | Msa0153200:CDS | 40.0% | |
| GAGCATGATATAGACACAGA+TGG | - | chr1_4:16371017-16371036 | Msa0153200:CDS | 40.0% | |
| TGGTACTCTAGCCAATTTGA+AGG | - | chr1_4:16371037-16371056 | Msa0153200:CDS | 40.0% | |
| GACAATACTGTTACCATCTG+AGG | + | chr1_4:16371155-16371174 | None:intergenic | 40.0% | |
| GAAGATTAGTGTTCGCCTTA+AGG | - | chr1_4:16371195-16371214 | Msa0153200:CDS | 40.0% | |
| CAATAGATGCACTTCATGCT+TGG | + | chr1_4:16371222-16371241 | None:intergenic | 40.0% | |
| CAAGCATGAAGTGCATCTAT+TGG | - | chr1_4:16371220-16371239 | Msa0153200:CDS | 40.0% | |
| AACAGTAGCATCAGCAACTG+TGG | + | chr1_4:16370279-16370298 | None:intergenic | 45.0% | |
| GTCATCAGCTGAAGCAAAAG+TGG | + | chr1_4:16370375-16370394 | None:intergenic | 45.0% | |
| TCAGCTGATGACCTTGAGAA+AGG | - | chr1_4:16370383-16370402 | Msa0153200:CDS | 45.0% | |
| GGAGGCTAAACCAAATGATG+AGG | - | chr1_4:16370593-16370612 | Msa0153200:CDS | 45.0% | |
| GGTGTGGATTCCTCATCATT+TGG | + | chr1_4:16370606-16370625 | None:intergenic | 45.0% | |
| GGAATCCACACCCACTATAA+TGG | - | chr1_4:16370614-16370633 | Msa0153200:CDS | 45.0% | |
| GTAAAGTTCTCCTTCCCTAG+GGG | + | chr1_4:16370678-16370697 | None:intergenic | 45.0% | |
| GAGTAAAGTTCTCCTTCCCT+AGG | + | chr1_4:16370680-16370699 | None:intergenic | 45.0% | |
| AGCACTAACTTAGAGGATCC+TGG | - | chr1_4:16370702-16370721 | Msa0153200:CDS | 45.0% | |
| ! | GTAGCATTGGGCAATTTACC+AGG | + | chr1_4:16370723-16370742 | None:intergenic | 45.0% |
| AGTGACACAGCAGTAGCATT+GGG | + | chr1_4:16370735-16370754 | None:intergenic | 45.0% | |
| AAGTGACACAGCAGTAGCAT+TGG | + | chr1_4:16370736-16370755 | None:intergenic | 45.0% | |
| ! | AATGCTACTGCTGTGTCACT+TGG | - | chr1_4:16370735-16370754 | Msa0153200:CDS | 45.0% |
| !! | TGTGTCACTTGGTGATGCTA+GGG | - | chr1_4:16370746-16370765 | Msa0153200:CDS | 45.0% |
| CAGGCAGCAGACAAATTCTT+AGG | + | chr1_4:16370879-16370898 | None:intergenic | 45.0% | |
| TCTGCTGCCTGTTTGAAAGA+TGG | - | chr1_4:16370888-16370907 | Msa0153200:CDS | 45.0% | |
| GAGCAACTGTCAAAGTTCAC+TGG | - | chr1_4:16370995-16371014 | Msa0153200:intron | 45.0% | |
| CTTCATGAGAATGCTGCAGA+AGG | + | chr1_4:16371085-16371104 | None:intergenic | 45.0% | |
| CTGCAGCATTCTCATGAAGA+TGG | - | chr1_4:16371086-16371105 | Msa0153200:CDS | 45.0% | |
| GAAAGCTGCTAAACCTCAGA+TGG | - | chr1_4:16371139-16371158 | Msa0153200:CDS | 45.0% | |
| CACTTCATGCTTGGTCCTTA+AGG | + | chr1_4:16371213-16371232 | None:intergenic | 45.0% | |
| AACAGTAGCATCAGCAACTG+TGG | + | chr1_4:16370279-16370298 | None:intergenic | 45.0% | |
| GTCATCAGCTGAAGCAAAAG+TGG | + | chr1_4:16370375-16370394 | None:intergenic | 45.0% | |
| TCAGCTGATGACCTTGAGAA+AGG | - | chr1_4:16370383-16370402 | Msa0153200:CDS | 45.0% | |
| GGAGGCTAAACCAAATGATG+AGG | - | chr1_4:16370593-16370612 | Msa0153200:CDS | 45.0% | |
| GGTGTGGATTCCTCATCATT+TGG | + | chr1_4:16370606-16370625 | None:intergenic | 45.0% | |
| GGAATCCACACCCACTATAA+TGG | - | chr1_4:16370614-16370633 | Msa0153200:CDS | 45.0% | |
| GTAAAGTTCTCCTTCCCTAG+GGG | + | chr1_4:16370678-16370697 | None:intergenic | 45.0% | |
| GAGTAAAGTTCTCCTTCCCT+AGG | + | chr1_4:16370680-16370699 | None:intergenic | 45.0% | |
| AGCACTAACTTAGAGGATCC+TGG | - | chr1_4:16370702-16370721 | Msa0153200:CDS | 45.0% | |
| ! | GTAGCATTGGGCAATTTACC+AGG | + | chr1_4:16370723-16370742 | None:intergenic | 45.0% |
| AGTGACACAGCAGTAGCATT+GGG | + | chr1_4:16370735-16370754 | None:intergenic | 45.0% | |
| AAGTGACACAGCAGTAGCAT+TGG | + | chr1_4:16370736-16370755 | None:intergenic | 45.0% | |
| ! | AATGCTACTGCTGTGTCACT+TGG | - | chr1_4:16370735-16370754 | Msa0153200:CDS | 45.0% |
| !! | TGTGTCACTTGGTGATGCTA+GGG | - | chr1_4:16370746-16370765 | Msa0153200:CDS | 45.0% |
| CAGGCAGCAGACAAATTCTT+AGG | + | chr1_4:16370879-16370898 | None:intergenic | 45.0% | |
| TCTGCTGCCTGTTTGAAAGA+TGG | - | chr1_4:16370888-16370907 | Msa0153200:CDS | 45.0% | |
| GAGCAACTGTCAAAGTTCAC+TGG | - | chr1_4:16370995-16371014 | Msa0153200:intron | 45.0% | |
| CTTCATGAGAATGCTGCAGA+AGG | + | chr1_4:16371085-16371104 | None:intergenic | 45.0% | |
| CTGCAGCATTCTCATGAAGA+TGG | - | chr1_4:16371086-16371105 | Msa0153200:CDS | 45.0% | |
| GAAAGCTGCTAAACCTCAGA+TGG | - | chr1_4:16371139-16371158 | Msa0153200:CDS | 45.0% | |
| CACTTCATGCTTGGTCCTTA+AGG | + | chr1_4:16371213-16371232 | None:intergenic | 45.0% | |
| CCAACTGCTACAATGTGGTG+AGG | + | chr1_4:16370314-16370333 | None:intergenic | 50.0% | |
| CCTCACCACATTGTAGCAGT+TGG | - | chr1_4:16370311-16370330 | Msa0153200:CDS | 50.0% | |
| !! | GCTTGAAAGTGGCTCTGAAC+TGG | - | chr1_4:16370563-16370582 | Msa0153200:CDS | 50.0% |
| !! | AGTGGCTCTGAACTGGTAAC+AGG | - | chr1_4:16370570-16370589 | Msa0153200:CDS | 50.0% |
| !! | GTGGCTCTGAACTGGTAACA+GGG | - | chr1_4:16370571-16370590 | Msa0153200:CDS | 50.0% |
| !! | TGGCTCTGAACTGGTAACAG+GGG | - | chr1_4:16370572-16370591 | Msa0153200:CDS | 50.0% |
| !! | CTGTGTCACTTGGTGATGCT+AGG | - | chr1_4:16370745-16370764 | Msa0153200:CDS | 50.0% |
| !!! | GAGTAAGTTTTGGGGGGATG+AGG | - | chr1_4:16370920-16370939 | Msa0153200:CDS | 50.0% |
| AGTTGCTCTTGTGAGCCTCA+TGG | + | chr1_4:16370983-16371002 | None:intergenic | 50.0% | |
| ! | GAGAATGCTGCAGAAGGTAC+TGG | + | chr1_4:16371079-16371098 | None:intergenic | 50.0% |
| TTCTTTGTGCCTTTCCTGCC+TGG | + | chr1_4:16371122-16371141 | None:intergenic | 50.0% | |
| CCAACTGCTACAATGTGGTG+AGG | + | chr1_4:16370314-16370333 | None:intergenic | 50.0% | |
| CCTCACCACATTGTAGCAGT+TGG | - | chr1_4:16370311-16370330 | Msa0153200:CDS | 50.0% | |
| !! | GCTTGAAAGTGGCTCTGAAC+TGG | - | chr1_4:16370563-16370582 | Msa0153200:CDS | 50.0% |
| !! | AGTGGCTCTGAACTGGTAAC+AGG | - | chr1_4:16370570-16370589 | Msa0153200:CDS | 50.0% |
| !! | GTGGCTCTGAACTGGTAACA+GGG | - | chr1_4:16370571-16370590 | Msa0153200:CDS | 50.0% |
| !! | TGGCTCTGAACTGGTAACAG+GGG | - | chr1_4:16370572-16370591 | Msa0153200:CDS | 50.0% |
| !! | CTGTGTCACTTGGTGATGCT+AGG | - | chr1_4:16370745-16370764 | Msa0153200:CDS | 50.0% |
| !!! | GAGTAAGTTTTGGGGGGATG+AGG | - | chr1_4:16370920-16370939 | Msa0153200:CDS | 50.0% |
| AGTTGCTCTTGTGAGCCTCA+TGG | + | chr1_4:16370983-16371002 | None:intergenic | 50.0% | |
| ! | GAGAATGCTGCAGAAGGTAC+TGG | + | chr1_4:16371079-16371098 | None:intergenic | 50.0% |
| TTCTTTGTGCCTTTCCTGCC+TGG | + | chr1_4:16371122-16371141 | None:intergenic | 50.0% | |
| GCATCAGCAACTGTGGACAC+AGG | + | chr1_4:16370272-16370291 | None:intergenic | 55.0% | |
| CTCTGAACTGGTAACAGGGG+AGG | - | chr1_4:16370575-16370594 | Msa0153200:CDS | 55.0% | |
| !! | AGGGGATTGGCCACCACATT+TGG | + | chr1_4:16370660-16370679 | None:intergenic | 55.0% |
| AATGTGGTGGCCAATCCCCT+AGG | - | chr1_4:16370660-16370679 | Msa0153200:CDS | 55.0% | |
| ATGTGGTGGCCAATCCCCTA+GGG | - | chr1_4:16370661-16370680 | Msa0153200:CDS | 55.0% | |
| GTTCTCCTTCCCTAGGGGAT+TGG | + | chr1_4:16370673-16370692 | None:intergenic | 55.0% | |
| GCATCAGCAACTGTGGACAC+AGG | + | chr1_4:16370272-16370291 | None:intergenic | 55.0% | |
| CTCTGAACTGGTAACAGGGG+AGG | - | chr1_4:16370575-16370594 | Msa0153200:CDS | 55.0% | |
| !! | AGGGGATTGGCCACCACATT+TGG | + | chr1_4:16370660-16370679 | None:intergenic | 55.0% |
| AATGTGGTGGCCAATCCCCT+AGG | - | chr1_4:16370660-16370679 | Msa0153200:CDS | 55.0% | |
| ATGTGGTGGCCAATCCCCTA+GGG | - | chr1_4:16370661-16370680 | Msa0153200:CDS | 55.0% | |
| GTTCTCCTTCCCTAGGGGAT+TGG | + | chr1_4:16370673-16370692 | None:intergenic | 55.0% | |
| GGTGGCCAATCCCCTAGGGA+AGG | - | chr1_4:16370665-16370684 | Msa0153200:CDS | 65.0% | |
| GGTGGCCAATCCCCTAGGGA+AGG | - | chr1_4:16370665-16370684 | Msa0153200:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 16370167 | 16371250 | 16370167 | ID=Msa0153200;Name=Msa0153200 |
| chr1_4 | mRNA | 16370167 | 16371250 | 16370167 | ID=Msa0153200-mRNA-1;Parent=Msa0153200;Name=Msa0153200-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|355 |
| chr1_4 | exon | 16371013 | 16371250 | 16371013 | ID=Msa0153200-mRNA-1:exon:6288;Parent=Msa0153200-mRNA-1 |
| chr1_4 | exon | 16370167 | 16370996 | 16370167 | ID=Msa0153200-mRNA-1:exon:6287;Parent=Msa0153200-mRNA-1 |
| chr1_4 | CDS | 16371013 | 16371250 | 16371013 | ID=Msa0153200-mRNA-1:cds;Parent=Msa0153200-mRNA-1 |
| chr1_4 | CDS | 16370167 | 16370996 | 16370167 | ID=Msa0153200-mRNA-1:cds;Parent=Msa0153200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
