Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548060 | PNY02171.1 | 52.542 | 118 | 48 | 2 | 1 | 112 | 50 | 165 | 1.83e-26 | 115 |
| Msa0548060 | PNY02171.1 | 57.143 | 70 | 29 | 1 | 108 | 177 | 258 | 326 | 1.96e-11 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548060 | A0A2K3NGK5 | 52.542 | 118 | 48 | 2 | 1 | 112 | 50 | 165 | 8.72e-27 | 115 |
| Msa0548060 | A0A2K3NGK5 | 57.143 | 70 | 29 | 1 | 108 | 177 | 258 | 326 | 9.35e-12 | 74.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0068630 | Msa0548060 | 0.831628 | 1.498537e-55 | -8.615850e-47 |
| Msa0118050 | Msa0548060 | 0.833086 | 6.527393e-56 | -8.615850e-47 |
| Msa0118060 | Msa0548060 | 0.814184 | 1.752797e-51 | -8.615850e-47 |
| Msa0145750 | Msa0548060 | 0.825109 | 5.607351e-54 | -8.615850e-47 |
| Msa0153200 | Msa0548060 | 0.813350 | 2.676075e-51 | -8.615850e-47 |
| Msa0162580 | Msa0548060 | 0.814246 | 1.698975e-51 | -8.615850e-47 |
| Msa0232850 | Msa0548060 | 0.829269 | 5.658685e-55 | -8.615850e-47 |
| Msa0384800 | Msa0548060 | 0.809184 | 2.145378e-50 | -8.615850e-47 |
| Msa0406120 | Msa0548060 | 0.836012 | 1.200742e-56 | -8.615850e-47 |
| Msa0452900 | Msa0548060 | 0.815025 | 1.141830e-51 | -8.615850e-47 |
| Msa0454910 | Msa0548060 | 0.812417 | 4.284477e-51 | -8.615850e-47 |
| Msa0456200 | Msa0548060 | 0.805100 | 1.570905e-49 | -8.615850e-47 |
| Msa0458420 | Msa0548060 | 0.806672 | 7.341605e-50 | -8.615850e-47 |
| Msa0267000 | Msa0548060 | 0.821132 | 4.751053e-53 | -8.615850e-47 |
| Msa0267010 | Msa0548060 | 0.827723 | 1.336481e-54 | -8.615850e-47 |
| Msa0342240 | Msa0548060 | 0.801606 | 8.317648e-49 | -8.615850e-47 |
| Msa0353190 | Msa0548060 | 0.817489 | 3.210769e-52 | -8.615850e-47 |
| Msa0353690 | Msa0548060 | 0.805168 | 1.520535e-49 | -8.615850e-47 |
| Msa0548060 | Msa0627410 | 0.808672 | 2.760030e-50 | -8.615850e-47 |
| Msa0548060 | Msa0636170 | 0.805320 | 1.412857e-49 | -8.615850e-47 |
| Msa0548060 | Msa0722510 | 0.815458 | 9.148316e-52 | -8.615850e-47 |
| Msa0548060 | Msa0726140 | 0.816492 | 5.378069e-52 | -8.615850e-47 |
| Msa0548060 | Msa0732710 | 0.806483 | 8.048564e-50 | -8.615850e-47 |
| Msa0548060 | Msa0743810 | 0.842948 | 1.892313e-58 | -8.615850e-47 |
| Msa0548060 | Msa0745060 | 0.849545 | 3.019283e-60 | -8.615850e-47 |
| Msa0548060 | Msa0777870 | 0.805964 | 1.034992e-49 | -8.615850e-47 |
| Msa0548060 | Msa0825860 | 0.859280 | 4.613924e-63 | -8.615850e-47 |
| Msa0548060 | Msa0846330 | 0.801697 | 7.968281e-49 | -8.615850e-47 |
| Msa0548060 | Msa0846350 | 0.800926 | 1.146170e-48 | -8.615850e-47 |
| Msa0548060 | Msa0865320 | 0.839936 | 1.175627e-57 | -8.615850e-47 |
| Msa0548060 | Msa0885290 | 0.827128 | 1.855919e-54 | -8.615850e-47 |
| Msa0548060 | Msa0902020 | 0.805715 | 1.167756e-49 | -8.615850e-47 |
| Msa0548060 | Msa0957860 | 0.808284 | 3.340201e-50 | -8.615850e-47 |
| Msa0548060 | Msa0957960 | 0.808389 | 3.171860e-50 | -8.615850e-47 |
| Msa0548060 | Msa0964180 | 0.832720 | 8.047952e-56 | -8.615850e-47 |
| Msa0548060 | Msa0989060 | 0.837404 | 5.303894e-57 | -8.615850e-47 |
| Msa0548060 | Msa1016280 | 0.809785 | 1.594070e-50 | -8.615850e-47 |
| Msa0548060 | Msa1024240 | 0.819117 | 1.374104e-52 | -8.615850e-47 |
| Msa0548060 | Msa1025360 | 0.827954 | 1.176189e-54 | -8.615850e-47 |
| Msa0548060 | Msa1025370 | 0.828749 | 7.561074e-55 | -8.615850e-47 |
| Msa0548060 | Msa1044830 | 0.817009 | 4.117003e-52 | -8.615850e-47 |
| Msa0548060 | Msa1044840 | 0.835106 | 2.034866e-56 | -8.615850e-47 |
| Msa0548060 | Msa1092990 | 0.829614 | 4.664921e-55 | -8.615850e-47 |
| Msa0548060 | Msa1100980 | 0.854825 | 9.508809e-62 | -8.615850e-47 |
| Msa0548060 | Msa1135740 | 0.834551 | 2.808009e-56 | -8.615850e-47 |
| Msa0548060 | Msa1146110 | 0.801189 | 1.012622e-48 | -8.615850e-47 |
| Msa0548060 | Msa1173920 | 0.833939 | 3.997122e-56 | -8.615850e-47 |
| Msa0548060 | Msa1178720 | 0.810285 | 1.243779e-50 | -8.615850e-47 |
| Msa0548060 | Msa1187940 | 0.825994 | 3.460226e-54 | -8.615850e-47 |
| Msa0548060 | Msa1187950 | 0.820939 | 5.260645e-53 | -8.615850e-47 |
| Msa0548060 | Msa1246880 | 0.807570 | 4.739554e-50 | -8.615850e-47 |
| Msa0548060 | Msa1269670 | 0.832847 | 7.481366e-56 | -8.615850e-47 |
| Msa0548060 | Msa1270230 | 0.803842 | 2.874610e-49 | -8.615850e-47 |
| Msa0548060 | Msa1270240 | 0.818941 | 1.506779e-52 | -8.615850e-47 |
| Msa0548060 | Msa1270270 | 0.862283 | 5.656683e-64 | -8.615850e-47 |
| Msa0548060 | Msa1283330 | 0.836277 | 1.028165e-56 | -8.615850e-47 |
| Msa0548060 | Msa1285930 | 0.808281 | 3.344529e-50 | -8.615850e-47 |
| Msa0548060 | Msa1287810 | 0.813028 | 3.149227e-51 | -8.615850e-47 |
| Msa0548060 | Msa1287820 | 0.805767 | 1.138558e-49 | -8.615850e-47 |
| Msa0548060 | Msa1287830 | 0.807135 | 5.859670e-50 | -8.615850e-47 |
| Msa0548060 | Msa1297210 | 0.814582 | 1.431570e-51 | -8.615850e-47 |
| Msa0548060 | Msa1314280 | 0.829202 | 5.873874e-55 | -8.615850e-47 |
| Msa0548060 | Msa1386330 | 0.801413 | 9.108789e-49 | -8.615850e-47 |
| Msa0548060 | Msa1404000 | 0.800852 | 1.186314e-48 | -8.615850e-47 |
| Msa0548060 | Msa1415310 | 0.835094 | 2.049080e-56 | -8.615850e-47 |
| Msa0548060 | Msa1433120 | 0.814038 | 1.887799e-51 | -8.615850e-47 |
| Msa0548060 | Msa1463140 | 0.813463 | 2.527567e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548060 | MtrunA17_Chr7g0255021 | 36.559 | 93 | 57 | 1 | 13 | 105 | 76 | 166 | 5.59e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAACTCTCTACTCAAAT+TGG | 0.264103 | 4_1:-41766521 | Msa0548060:CDS |
| AATTGTCTGATTTCCTTCTT+TGG | 0.270940 | 4_1:+41766293 | None:intergenic |
| GACCATTCAACCGATGATAC+TGG | 0.320311 | 4_1:+41766264 | None:intergenic |
| GCTCTTCGTTTGTTAGCATA+TGG | 0.341125 | 4_1:-41764777 | Msa0548060:CDS |
| GAGTTGTGGCATGTCATTAA+AGG | 0.345162 | 4_1:+41766535 | None:intergenic |
| GAACTGCATCAACCCTTGTT+TGG | 0.345344 | 4_1:+41764838 | None:intergenic |
| TGATTTCCTTCTTTGGAAGT+TGG | 0.432782 | 4_1:+41766300 | None:intergenic |
| TGTCCCATTGGACGGGTCAA+TGG | 0.452565 | 4_1:+41765942 | None:intergenic |
| CAATCATCCACATTATCAAC+AGG | 0.465057 | 4_1:+41764750 | None:intergenic |
| AAATGTCATCATGTTAAAGA+TGG | 0.492131 | 4_1:-41765826 | Msa0548060:CDS |
| ACTCTCTACTCAAATTGGAT+TGG | 0.492596 | 4_1:-41766516 | Msa0548060:CDS |
| GTTGATGCAGTTCGTAGATT+AGG | 0.494355 | 4_1:-41764828 | Msa0548060:CDS |
| GGGAAAAGGAGGCCATTGTA+AGG | 0.495122 | 4_1:-41765794 | Msa0548060:CDS |
| GCCCAGTATCATCGGTTGAA+TGG | 0.498987 | 4_1:-41766266 | Msa0548060:CDS |
| GGCAGATGCAAAGGCAAGGG+AGG | 0.516225 | 4_1:-41765769 | Msa0548060:CDS |
| TGCATCTGCCTCCCTTACAA+TGG | 0.516983 | 4_1:+41765782 | None:intergenic |
| TGCACTTCTGCAATGGTGAA+AGG | 0.519752 | 4_1:+41764805 | None:intergenic |
| TCACCATTGACCCGTCCAAT+GGG | 0.520917 | 4_1:-41765945 | Msa0548060:CDS |
| ACCATTCAACCGATGATACT+GGG | 0.533581 | 4_1:+41766265 | None:intergenic |
| TGTTAAAGATGGACGAAGCA+AGG | 0.533754 | 4_1:-41765815 | Msa0548060:CDS |
| GATGGACGAAGCAAGGGAAA+AGG | 0.540183 | 4_1:-41765808 | Msa0548060:CDS |
| ATCACCATTGACCCGTCCAA+TGG | 0.543407 | 4_1:-41765946 | Msa0548060:CDS |
| CCTTCTTTGGAAGTTGGTCG+TGG | 0.543659 | 4_1:+41766306 | None:intergenic |
| AATTAAAAGCCCAGTATCAT+CGG | 0.552075 | 4_1:-41766274 | Msa0548060:CDS |
| GGAGGCAGATGCAAAGGCAA+GGG | 0.553448 | 4_1:-41765772 | Msa0548060:CDS |
| AGTAATCATCATGATTTCCA+AGG | 0.555546 | 4_1:+41764862 | None:intergenic |
| TCTCCAATGGGTTCTAGTAG+TGG | 0.559487 | 4_1:-41766566 | None:intergenic |
| CCACGACCAACTTCCAAAGA+AGG | 0.566092 | 4_1:-41766306 | Msa0548060:CDS |
| GTTAAAGATGGACGAAGCAA+GGG | 0.574672 | 4_1:-41765814 | Msa0548060:CDS |
| TGTAAGGGAGGCAGATGCAA+AGG | 0.580926 | 4_1:-41765778 | Msa0548060:CDS |
| AATGGGTTCTAGTAGTGGTG+TGG | 0.581573 | 4_1:-41766561 | Msa0548060:CDS |
| CCAATTTGAGTAGAGAGTTG+TGG | 0.585944 | 4_1:+41766521 | None:intergenic |
| GACGGGTCAATGGTGATGCT+TGG | 0.586098 | 4_1:+41765952 | None:intergenic |
| GCGACAATGCACTTCTGCAA+TGG | 0.591825 | 4_1:+41764798 | None:intergenic |
| GGGAGGCAGATGCAAAGGCA+AGG | 0.593713 | 4_1:-41765773 | Msa0548060:CDS |
| GGAAAAGGAGGCCATTGTAA+GGG | 0.594873 | 4_1:-41765793 | Msa0548060:CDS |
| ATGATGATTACTTCCAAACA+AGG | 0.600368 | 4_1:-41764851 | Msa0548060:CDS |
| GCAGATGCAAAGGCAAGGGA+GGG | 0.610630 | 4_1:-41765768 | Msa0548060:intron |
| TGGAGTTCCTGTTGATAATG+TGG | 0.611357 | 4_1:-41764757 | Msa0548060:CDS |
| GTAATCATCATGATTTCCAA+GGG | 0.614133 | 4_1:+41764863 | None:intergenic |
| GGACGAAGCAAGGGAAAAGG+AGG | 0.619404 | 4_1:-41765805 | Msa0548060:CDS |
| ACACCACTACTAGAACCCAT+TGG | 0.625021 | 4_1:+41766563 | None:intergenic |
| AAAGGAGGCCATTGTAAGGG+AGG | 0.650330 | 4_1:-41765790 | Msa0548060:CDS |
| ATAATGTGGATGATTGTGTG+TGG | 0.650338 | 4_1:-41764743 | Msa0548060:CDS |
| TGATGATTACTTCCAAACAA+GGG | 0.670567 | 4_1:-41764850 | Msa0548060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGGTTATTTTTATAA+CGG | + | chr4_1:41766014-41766033 | None:intergenic | 10.0% |
| !!! | TTTAATGGTTATTTTTATAA+CGG | + | chr4_1:41766014-41766033 | None:intergenic | 10.0% |
| !!! | AATTTTGTTGTAATCATATT+AGG | - | chr4_1:41765626-41765645 | Msa0548060:intron | 15.0% |
| !!! | AATTTTGTTGTAATCATATT+AGG | - | chr4_1:41765626-41765645 | Msa0548060:intron | 15.0% |
| !!! | TTTAACCTCTACTTTTATAA+CGG | + | chr4_1:41765984-41766003 | None:intergenic | 20.0% |
| !! | AAAATATAAGGGTGATAAAT+CGG | - | chr4_1:41766284-41766303 | Msa0548060:CDS | 20.0% |
| !!! | TTTAACCTCTACTTTTATAA+CGG | + | chr4_1:41765984-41766003 | None:intergenic | 20.0% |
| !! | AAAATATAAGGGTGATAAAT+CGG | - | chr4_1:41766284-41766303 | Msa0548060:CDS | 20.0% |
| !!! | CATTTTGAAAGACTTAATTG+TGG | - | chr4_1:41764907-41764926 | Msa0548060:intron | 25.0% |
| !! | ACCAAAAATCATATGGTTTT+TGG | - | chr4_1:41764936-41764955 | Msa0548060:intron | 25.0% |
| !! | TCCAAAAACCATATGATTTT+TGG | + | chr4_1:41764940-41764959 | None:intergenic | 25.0% |
| ! | AATTCATTCATGTGCATTTA+TGG | - | chr4_1:41765178-41765197 | Msa0548060:intron | 25.0% |
| !! | AAACTTTTCAAAACGAACAA+AGG | - | chr4_1:41765245-41765264 | Msa0548060:intron | 25.0% |
| ! | GTAGTAAAAAGGAAGATTAA+AGG | - | chr4_1:41765379-41765398 | Msa0548060:intron | 25.0% |
| ! | AAATGTCATCATGTTAAAGA+TGG | - | chr4_1:41765468-41765487 | Msa0548060:intron | 25.0% |
| ! | AAATGAAAACTAGTCGTTAA+AGG | - | chr4_1:41765758-41765777 | Msa0548060:intron | 25.0% |
| !! | GTTAAAGGTTAATTCAAGTT+TGG | - | chr4_1:41765773-41765792 | Msa0548060:CDS | 25.0% |
| ! | CTTACATTTAATGTTCATTC+AGG | - | chr4_1:41765823-41765842 | Msa0548060:CDS | 25.0% |
| !! | TTAACTTGAATTGACACTAA+CGG | + | chr4_1:41765880-41765899 | None:intergenic | 25.0% |
| !!! | TGTAACGACTAGTTTTTTAA+TGG | + | chr4_1:41766029-41766048 | None:intergenic | 25.0% |
| !!! | CATTTTGAAAGACTTAATTG+TGG | - | chr4_1:41764907-41764926 | Msa0548060:intron | 25.0% |
| !! | ACCAAAAATCATATGGTTTT+TGG | - | chr4_1:41764936-41764955 | Msa0548060:intron | 25.0% |
| !! | TCCAAAAACCATATGATTTT+TGG | + | chr4_1:41764940-41764959 | None:intergenic | 25.0% |
| ! | AATTCATTCATGTGCATTTA+TGG | - | chr4_1:41765178-41765197 | Msa0548060:intron | 25.0% |
| !! | AAACTTTTCAAAACGAACAA+AGG | - | chr4_1:41765245-41765264 | Msa0548060:intron | 25.0% |
| ! | GTAGTAAAAAGGAAGATTAA+AGG | - | chr4_1:41765379-41765398 | Msa0548060:intron | 25.0% |
| ! | AAATGTCATCATGTTAAAGA+TGG | - | chr4_1:41765468-41765487 | Msa0548060:intron | 25.0% |
| ! | AAATGAAAACTAGTCGTTAA+AGG | - | chr4_1:41765758-41765777 | Msa0548060:intron | 25.0% |
| !! | GTTAAAGGTTAATTCAAGTT+TGG | - | chr4_1:41765773-41765792 | Msa0548060:CDS | 25.0% |
| ! | CTTACATTTAATGTTCATTC+AGG | - | chr4_1:41765823-41765842 | Msa0548060:CDS | 25.0% |
| !! | TTAACTTGAATTGACACTAA+CGG | + | chr4_1:41765880-41765899 | None:intergenic | 25.0% |
| !!! | TGTAACGACTAGTTTTTTAA+TGG | + | chr4_1:41766029-41766048 | None:intergenic | 25.0% |
| AATTGTCTGATTTCCTTCTT+TGG | + | chr4_1:41765004-41765023 | None:intergenic | 30.0% | |
| AATTAAAAGCCCAGTATCAT+CGG | - | chr4_1:41765020-41765039 | Msa0548060:intron | 30.0% | |
| TACTCAAAGATGAACCAAAA+TGG | - | chr4_1:41765205-41765224 | Msa0548060:intron | 30.0% | |
| AAAGATGAACCAAAATGGAA+GGG | - | chr4_1:41765210-41765229 | Msa0548060:intron | 30.0% | |
| CTGAACAATCAATTGGTATT+TGG | + | chr4_1:41765315-41765334 | None:intergenic | 30.0% | |
| TCATAGTCTGAACAATCAAT+TGG | + | chr4_1:41765322-41765341 | None:intergenic | 30.0% | |
| !!! | TTTACTACTTTTTGTCCCAT+TGG | + | chr4_1:41765367-41765386 | None:intergenic | 30.0% |
| TGGGACAAAAAGTAGTAAAA+AGG | - | chr4_1:41765368-41765387 | Msa0548060:intron | 30.0% | |
| AATCATATTAGGCAGAAGTT+AGG | - | chr4_1:41765637-41765656 | Msa0548060:intron | 30.0% | |
| !!! | TATAACGGCTGGTTTTTTAA+AGG | + | chr4_1:41765969-41765988 | None:intergenic | 30.0% |
| ACTATGCGCAACAAAATATA+AGG | - | chr4_1:41766272-41766291 | Msa0548060:CDS | 30.0% | |
| CTATGCGCAACAAAATATAA+GGG | - | chr4_1:41766273-41766292 | Msa0548060:CDS | 30.0% | |
| GTAATCATCATGATTTCCAA+GGG | + | chr4_1:41766434-41766453 | None:intergenic | 30.0% | |
| AGTAATCATCATGATTTCCA+AGG | + | chr4_1:41766435-41766454 | None:intergenic | 30.0% | |
| ATGATGATTACTTCCAAACA+AGG | - | chr4_1:41766443-41766462 | Msa0548060:CDS | 30.0% | |
| TGATGATTACTTCCAAACAA+GGG | - | chr4_1:41766444-41766463 | Msa0548060:CDS | 30.0% | |
| AATTGTCTGATTTCCTTCTT+TGG | + | chr4_1:41765004-41765023 | None:intergenic | 30.0% | |
| AATTAAAAGCCCAGTATCAT+CGG | - | chr4_1:41765020-41765039 | Msa0548060:intron | 30.0% | |
| TACTCAAAGATGAACCAAAA+TGG | - | chr4_1:41765205-41765224 | Msa0548060:intron | 30.0% | |
| AAAGATGAACCAAAATGGAA+GGG | - | chr4_1:41765210-41765229 | Msa0548060:intron | 30.0% | |
| CTGAACAATCAATTGGTATT+TGG | + | chr4_1:41765315-41765334 | None:intergenic | 30.0% | |
| TCATAGTCTGAACAATCAAT+TGG | + | chr4_1:41765322-41765341 | None:intergenic | 30.0% | |
| !!! | TTTACTACTTTTTGTCCCAT+TGG | + | chr4_1:41765367-41765386 | None:intergenic | 30.0% |
| TGGGACAAAAAGTAGTAAAA+AGG | - | chr4_1:41765368-41765387 | Msa0548060:intron | 30.0% | |
| AATCATATTAGGCAGAAGTT+AGG | - | chr4_1:41765637-41765656 | Msa0548060:intron | 30.0% | |
| !!! | TATAACGGCTGGTTTTTTAA+AGG | + | chr4_1:41765969-41765988 | None:intergenic | 30.0% |
| ACTATGCGCAACAAAATATA+AGG | - | chr4_1:41766272-41766291 | Msa0548060:CDS | 30.0% | |
| CTATGCGCAACAAAATATAA+GGG | - | chr4_1:41766273-41766292 | Msa0548060:CDS | 30.0% | |
| GTAATCATCATGATTTCCAA+GGG | + | chr4_1:41766434-41766453 | None:intergenic | 30.0% | |
| AGTAATCATCATGATTTCCA+AGG | + | chr4_1:41766435-41766454 | None:intergenic | 30.0% | |
| ATGATGATTACTTCCAAACA+AGG | - | chr4_1:41766443-41766462 | Msa0548060:CDS | 30.0% | |
| TGATGATTACTTCCAAACAA+GGG | - | chr4_1:41766444-41766463 | Msa0548060:CDS | 30.0% | |
| ACTCTCTACTCAAATTGGAT+TGG | - | chr4_1:41764778-41764797 | Msa0548060:CDS | 35.0% | |
| GAAGTCGACCAAAAATCATA+TGG | - | chr4_1:41764929-41764948 | Msa0548060:intron | 35.0% | |
| ! | TGATTTCCTTCTTTGGAAGT+TGG | + | chr4_1:41764997-41765016 | None:intergenic | 35.0% |
| TGGTCGTATTTAGAAGTTTG+TGG | - | chr4_1:41765048-41765067 | Msa0548060:intron | 35.0% | |
| GGTCGTATTTAGAAGTTTGT+GGG | - | chr4_1:41765049-41765068 | Msa0548060:intron | 35.0% | |
| !! | CCCACTTTTGCTTTGATTAA+GGG | + | chr4_1:41765089-41765108 | None:intergenic | 35.0% |
| CCCTTAATCAAAGCAAAAGT+GGG | - | chr4_1:41765086-41765105 | Msa0548060:intron | 35.0% | |
| !! | ACCCACTTTTGCTTTGATTA+AGG | + | chr4_1:41765090-41765109 | None:intergenic | 35.0% |
| CAAAGATGAACCAAAATGGA+AGG | - | chr4_1:41765209-41765228 | Msa0548060:intron | 35.0% | |
| !! | CAATTGGTATTTGGTGTCAT+TGG | + | chr4_1:41765306-41765325 | None:intergenic | 35.0% |
| !! | TTGGTAATGTTCTCTTGAGT+TGG | + | chr4_1:41766058-41766077 | None:intergenic | 35.0% |
| GATTGAACAGATGAGAAGAT+TGG | + | chr4_1:41766077-41766096 | None:intergenic | 35.0% | |
| TTCACATATCATCTGCACAA+TGG | - | chr4_1:41766133-41766152 | Msa0548060:intron | 35.0% | |
| TTGCATCAGAGTTAGTGTTA+GGG | + | chr4_1:41766160-41766179 | None:intergenic | 35.0% | |
| ATTGCATCAGAGTTAGTGTT+AGG | + | chr4_1:41766161-41766180 | None:intergenic | 35.0% | |
| CGAAACATTCATCTAACACT+TGG | + | chr4_1:41766190-41766209 | None:intergenic | 35.0% | |
| AGTGTTAGATGAATGTTTCG+AGG | - | chr4_1:41766190-41766209 | Msa0548060:intron | 35.0% | |
| CAATCATCCACATTATCAAC+AGG | + | chr4_1:41766547-41766566 | None:intergenic | 35.0% | |
| ATAATGTGGATGATTGTGTG+TGG | - | chr4_1:41766551-41766570 | Msa0548060:CDS | 35.0% | |
| ACTCTCTACTCAAATTGGAT+TGG | - | chr4_1:41764778-41764797 | Msa0548060:CDS | 35.0% | |
| GAAGTCGACCAAAAATCATA+TGG | - | chr4_1:41764929-41764948 | Msa0548060:intron | 35.0% | |
| ! | TGATTTCCTTCTTTGGAAGT+TGG | + | chr4_1:41764997-41765016 | None:intergenic | 35.0% |
| TGGTCGTATTTAGAAGTTTG+TGG | - | chr4_1:41765048-41765067 | Msa0548060:intron | 35.0% | |
| GGTCGTATTTAGAAGTTTGT+GGG | - | chr4_1:41765049-41765068 | Msa0548060:intron | 35.0% | |
| !! | CCCACTTTTGCTTTGATTAA+GGG | + | chr4_1:41765089-41765108 | None:intergenic | 35.0% |
| CCCTTAATCAAAGCAAAAGT+GGG | - | chr4_1:41765086-41765105 | Msa0548060:intron | 35.0% | |
| !! | ACCCACTTTTGCTTTGATTA+AGG | + | chr4_1:41765090-41765109 | None:intergenic | 35.0% |
| CAAAGATGAACCAAAATGGA+AGG | - | chr4_1:41765209-41765228 | Msa0548060:intron | 35.0% | |
| !! | CAATTGGTATTTGGTGTCAT+TGG | + | chr4_1:41765306-41765325 | None:intergenic | 35.0% |
| !! | TTGGTAATGTTCTCTTGAGT+TGG | + | chr4_1:41766058-41766077 | None:intergenic | 35.0% |
| GATTGAACAGATGAGAAGAT+TGG | + | chr4_1:41766077-41766096 | None:intergenic | 35.0% | |
| TTCACATATCATCTGCACAA+TGG | - | chr4_1:41766133-41766152 | Msa0548060:intron | 35.0% | |
| TTGCATCAGAGTTAGTGTTA+GGG | + | chr4_1:41766160-41766179 | None:intergenic | 35.0% | |
| ATTGCATCAGAGTTAGTGTT+AGG | + | chr4_1:41766161-41766180 | None:intergenic | 35.0% | |
| CGAAACATTCATCTAACACT+TGG | + | chr4_1:41766190-41766209 | None:intergenic | 35.0% | |
| AGTGTTAGATGAATGTTTCG+AGG | - | chr4_1:41766190-41766209 | Msa0548060:intron | 35.0% | |
| CAATCATCCACATTATCAAC+AGG | + | chr4_1:41766547-41766566 | None:intergenic | 35.0% | |
| ATAATGTGGATGATTGTGTG+TGG | - | chr4_1:41766551-41766570 | Msa0548060:CDS | 35.0% | |
| GAGTTGTGGCATGTCATTAA+AGG | + | chr4_1:41764762-41764781 | None:intergenic | 40.0% | |
| CCAATTTGAGTAGAGAGTTG+TGG | + | chr4_1:41764776-41764795 | None:intergenic | 40.0% | |
| CCACAACTCTCTACTCAAAT+TGG | - | chr4_1:41764773-41764792 | Msa0548060:CDS | 40.0% | |
| ACCATTCAACCGATGATACT+GGG | + | chr4_1:41765032-41765051 | None:intergenic | 40.0% | |
| GCCCTTAATCAAAGCAAAAG+TGG | - | chr4_1:41765085-41765104 | Msa0548060:intron | 40.0% | |
| ! | ATTGCATCTCCCTTCCATTT+TGG | + | chr4_1:41765222-41765241 | None:intergenic | 40.0% |
| !! | TACTTTTTGTCCCATTGGAC+GGG | + | chr4_1:41765362-41765381 | None:intergenic | 40.0% |
| !!! | CTACTTTTTGTCCCATTGGA+CGG | + | chr4_1:41765363-41765382 | None:intergenic | 40.0% |
| TGTTAAAGATGGACGAAGCA+AGG | - | chr4_1:41765479-41765498 | Msa0548060:intron | 40.0% | |
| GTTAAAGATGGACGAAGCAA+GGG | - | chr4_1:41765480-41765499 | Msa0548060:intron | 40.0% | |
| ACCAGCCGTTATAAAAGTAG+AGG | - | chr4_1:41765976-41765995 | Msa0548060:intron | 40.0% | |
| !! | ACCTCTACTTTTATAACGGC+TGG | + | chr4_1:41765980-41765999 | None:intergenic | 40.0% |
| TGGTACGATTGATACGTGAA+GGG | - | chr4_1:41766231-41766250 | Msa0548060:intron | 40.0% | |
| ATAAATCGGAGTCGTGAAGA+AGG | - | chr4_1:41766298-41766317 | Msa0548060:CDS | 40.0% | |
| TGCGTATACAAGATTTGCAG+AGG | + | chr4_1:41766350-41766369 | None:intergenic | 40.0% | |
| CTTTGAATTGTTGAAGCCCT+TGG | - | chr4_1:41766415-41766434 | Msa0548060:CDS | 40.0% | |
| GTTGATGCAGTTCGTAGATT+AGG | - | chr4_1:41766466-41766485 | Msa0548060:CDS | 40.0% | |
| ! | GCTCTTCGTTTGTTAGCATA+TGG | - | chr4_1:41766517-41766536 | Msa0548060:CDS | 40.0% |
| !! | TGGAGTTCCTGTTGATAATG+TGG | - | chr4_1:41766537-41766556 | Msa0548060:CDS | 40.0% |
| GAGTTGTGGCATGTCATTAA+AGG | + | chr4_1:41764762-41764781 | None:intergenic | 40.0% | |
| CCAATTTGAGTAGAGAGTTG+TGG | + | chr4_1:41764776-41764795 | None:intergenic | 40.0% | |
| CCACAACTCTCTACTCAAAT+TGG | - | chr4_1:41764773-41764792 | Msa0548060:CDS | 40.0% | |
| ACCATTCAACCGATGATACT+GGG | + | chr4_1:41765032-41765051 | None:intergenic | 40.0% | |
| GCCCTTAATCAAAGCAAAAG+TGG | - | chr4_1:41765085-41765104 | Msa0548060:intron | 40.0% | |
| ! | ATTGCATCTCCCTTCCATTT+TGG | + | chr4_1:41765222-41765241 | None:intergenic | 40.0% |
| !! | TACTTTTTGTCCCATTGGAC+GGG | + | chr4_1:41765362-41765381 | None:intergenic | 40.0% |
| !!! | CTACTTTTTGTCCCATTGGA+CGG | + | chr4_1:41765363-41765382 | None:intergenic | 40.0% |
| TGTTAAAGATGGACGAAGCA+AGG | - | chr4_1:41765479-41765498 | Msa0548060:intron | 40.0% | |
| GTTAAAGATGGACGAAGCAA+GGG | - | chr4_1:41765480-41765499 | Msa0548060:intron | 40.0% | |
| ACCAGCCGTTATAAAAGTAG+AGG | - | chr4_1:41765976-41765995 | Msa0548060:intron | 40.0% | |
| !! | ACCTCTACTTTTATAACGGC+TGG | + | chr4_1:41765980-41765999 | None:intergenic | 40.0% |
| TGGTACGATTGATACGTGAA+GGG | - | chr4_1:41766231-41766250 | Msa0548060:intron | 40.0% | |
| ATAAATCGGAGTCGTGAAGA+AGG | - | chr4_1:41766298-41766317 | Msa0548060:CDS | 40.0% | |
| TGCGTATACAAGATTTGCAG+AGG | + | chr4_1:41766350-41766369 | None:intergenic | 40.0% | |
| CTTTGAATTGTTGAAGCCCT+TGG | - | chr4_1:41766415-41766434 | Msa0548060:CDS | 40.0% | |
| GTTGATGCAGTTCGTAGATT+AGG | - | chr4_1:41766466-41766485 | Msa0548060:CDS | 40.0% | |
| ! | GCTCTTCGTTTGTTAGCATA+TGG | - | chr4_1:41766517-41766536 | Msa0548060:CDS | 40.0% |
| !! | TGGAGTTCCTGTTGATAATG+TGG | - | chr4_1:41766537-41766556 | Msa0548060:CDS | 40.0% |
| GACCATTCAACCGATGATAC+TGG | + | chr4_1:41765033-41765052 | None:intergenic | 45.0% | |
| GGAAAAGGAGGCCATTGTAA+GGG | - | chr4_1:41765501-41765520 | Msa0548060:intron | 45.0% | |
| GTGGTACGATTGATACGTGA+AGG | - | chr4_1:41766230-41766249 | Msa0548060:intron | 45.0% | |
| CAGACGATCAATTTCGTCGA+AGG | - | chr4_1:41766368-41766387 | Msa0548060:CDS | 45.0% | |
| GTCGAAGGTTCAGAATGTGA+AGG | - | chr4_1:41766383-41766402 | Msa0548060:CDS | 45.0% | |
| GAACTGCATCAACCCTTGTT+TGG | + | chr4_1:41766459-41766478 | None:intergenic | 45.0% | |
| TGCACTTCTGCAATGGTGAA+AGG | + | chr4_1:41766492-41766511 | None:intergenic | 45.0% | |
| GACCATTCAACCGATGATAC+TGG | + | chr4_1:41765033-41765052 | None:intergenic | 45.0% | |
| GGAAAAGGAGGCCATTGTAA+GGG | - | chr4_1:41765501-41765520 | Msa0548060:intron | 45.0% | |
| GTGGTACGATTGATACGTGA+AGG | - | chr4_1:41766230-41766249 | Msa0548060:intron | 45.0% | |
| CAGACGATCAATTTCGTCGA+AGG | - | chr4_1:41766368-41766387 | Msa0548060:CDS | 45.0% | |
| GTCGAAGGTTCAGAATGTGA+AGG | - | chr4_1:41766383-41766402 | Msa0548060:CDS | 45.0% | |
| GAACTGCATCAACCCTTGTT+TGG | + | chr4_1:41766459-41766478 | None:intergenic | 45.0% | |
| TGCACTTCTGCAATGGTGAA+AGG | + | chr4_1:41766492-41766511 | None:intergenic | 45.0% | |
| ! | CCTTCTTTGGAAGTTGGTCG+TGG | + | chr4_1:41764991-41765010 | None:intergenic | 50.0% |
| CCACGACCAACTTCCAAAGA+AGG | - | chr4_1:41764988-41765007 | Msa0548060:intron | 50.0% | |
| ! | GCCCAGTATCATCGGTTGAA+TGG | - | chr4_1:41765028-41765047 | Msa0548060:intron | 50.0% |
| CGAACAAAGGTCTCCAGTAG+TGG | - | chr4_1:41765258-41765277 | Msa0548060:intron | 50.0% | |
| ACAAAGGTCTCCAGTAGTGG+AGG | - | chr4_1:41765261-41765280 | Msa0548060:intron | 50.0% | |
| ! | CAAAGGTCTCCAGTAGTGGA+GGG | - | chr4_1:41765262-41765281 | Msa0548060:intron | 50.0% |
| TGTTGTGTACCCTCCACTAC+TGG | + | chr4_1:41765274-41765293 | None:intergenic | 50.0% | |
| ATCACCATTGACCCGTCCAA+TGG | - | chr4_1:41765348-41765367 | Msa0548060:intron | 50.0% | |
| TCACCATTGACCCGTCCAAT+GGG | - | chr4_1:41765349-41765368 | Msa0548060:intron | 50.0% | |
| GATGGACGAAGCAAGGGAAA+AGG | - | chr4_1:41765486-41765505 | Msa0548060:intron | 50.0% | |
| GGGAAAAGGAGGCCATTGTA+AGG | - | chr4_1:41765500-41765519 | Msa0548060:intron | 50.0% | |
| AAAGGAGGCCATTGTAAGGG+AGG | - | chr4_1:41765504-41765523 | Msa0548060:intron | 50.0% | |
| TGCATCTGCCTCCCTTACAA+TGG | + | chr4_1:41765515-41765534 | None:intergenic | 50.0% | |
| TGTAAGGGAGGCAGATGCAA+AGG | - | chr4_1:41765516-41765535 | Msa0548060:intron | 50.0% | |
| ATCGTACCACTTCTCCTGCA+GGG | + | chr4_1:41766220-41766239 | None:intergenic | 50.0% | |
| AATCGTACCACTTCTCCTGC+AGG | + | chr4_1:41766221-41766240 | None:intergenic | 50.0% | |
| GCGACAATGCACTTCTGCAA+TGG | + | chr4_1:41766499-41766518 | None:intergenic | 50.0% | |
| ! | CCTTCTTTGGAAGTTGGTCG+TGG | + | chr4_1:41764991-41765010 | None:intergenic | 50.0% |
| CCACGACCAACTTCCAAAGA+AGG | - | chr4_1:41764988-41765007 | Msa0548060:intron | 50.0% | |
| ! | GCCCAGTATCATCGGTTGAA+TGG | - | chr4_1:41765028-41765047 | Msa0548060:intron | 50.0% |
| CGAACAAAGGTCTCCAGTAG+TGG | - | chr4_1:41765258-41765277 | Msa0548060:intron | 50.0% | |
| ACAAAGGTCTCCAGTAGTGG+AGG | - | chr4_1:41765261-41765280 | Msa0548060:intron | 50.0% | |
| ! | CAAAGGTCTCCAGTAGTGGA+GGG | - | chr4_1:41765262-41765281 | Msa0548060:intron | 50.0% |
| TGTTGTGTACCCTCCACTAC+TGG | + | chr4_1:41765274-41765293 | None:intergenic | 50.0% | |
| ATCACCATTGACCCGTCCAA+TGG | - | chr4_1:41765348-41765367 | Msa0548060:intron | 50.0% | |
| TCACCATTGACCCGTCCAAT+GGG | - | chr4_1:41765349-41765368 | Msa0548060:intron | 50.0% | |
| GATGGACGAAGCAAGGGAAA+AGG | - | chr4_1:41765486-41765505 | Msa0548060:intron | 50.0% | |
| GGGAAAAGGAGGCCATTGTA+AGG | - | chr4_1:41765500-41765519 | Msa0548060:intron | 50.0% | |
| AAAGGAGGCCATTGTAAGGG+AGG | - | chr4_1:41765504-41765523 | Msa0548060:intron | 50.0% | |
| TGCATCTGCCTCCCTTACAA+TGG | + | chr4_1:41765515-41765534 | None:intergenic | 50.0% | |
| TGTAAGGGAGGCAGATGCAA+AGG | - | chr4_1:41765516-41765535 | Msa0548060:intron | 50.0% | |
| ATCGTACCACTTCTCCTGCA+GGG | + | chr4_1:41766220-41766239 | None:intergenic | 50.0% | |
| AATCGTACCACTTCTCCTGC+AGG | + | chr4_1:41766221-41766240 | None:intergenic | 50.0% | |
| GCGACAATGCACTTCTGCAA+TGG | + | chr4_1:41766499-41766518 | None:intergenic | 50.0% | |
| ! | GACGGGTCAATGGTGATGCT+TGG | + | chr4_1:41765345-41765364 | None:intergenic | 55.0% |
| TGTCCCATTGGACGGGTCAA+TGG | + | chr4_1:41765355-41765374 | None:intergenic | 55.0% | |
| GGACGAAGCAAGGGAAAAGG+AGG | - | chr4_1:41765489-41765508 | Msa0548060:intron | 55.0% | |
| GGAGGCAGATGCAAAGGCAA+GGG | - | chr4_1:41765522-41765541 | Msa0548060:intron | 55.0% | |
| GCAGATGCAAAGGCAAGGGA+GGG | - | chr4_1:41765526-41765545 | Msa0548060:intron | 55.0% | |
| TGTTTCGAGGACAACCCTGC+AGG | - | chr4_1:41766203-41766222 | Msa0548060:intron | 55.0% | |
| ! | GACGGGTCAATGGTGATGCT+TGG | + | chr4_1:41765345-41765364 | None:intergenic | 55.0% |
| TGTCCCATTGGACGGGTCAA+TGG | + | chr4_1:41765355-41765374 | None:intergenic | 55.0% | |
| GGACGAAGCAAGGGAAAAGG+AGG | - | chr4_1:41765489-41765508 | Msa0548060:intron | 55.0% | |
| GGAGGCAGATGCAAAGGCAA+GGG | - | chr4_1:41765522-41765541 | Msa0548060:intron | 55.0% | |
| GCAGATGCAAAGGCAAGGGA+GGG | - | chr4_1:41765526-41765545 | Msa0548060:intron | 55.0% | |
| TGTTTCGAGGACAACCCTGC+AGG | - | chr4_1:41766203-41766222 | Msa0548060:intron | 55.0% | |
| GGGAGGCAGATGCAAAGGCA+AGG | - | chr4_1:41765521-41765540 | Msa0548060:intron | 60.0% | |
| GGCAGATGCAAAGGCAAGGG+AGG | - | chr4_1:41765525-41765544 | Msa0548060:intron | 60.0% | |
| GGCAAGGGAGGGTGAGAATG+AGG | - | chr4_1:41765537-41765556 | Msa0548060:intron | 60.0% | |
| GGACAACCCTGCAGGAGAAG+TGG | - | chr4_1:41766211-41766230 | Msa0548060:intron | 60.0% | |
| GGGAGGCAGATGCAAAGGCA+AGG | - | chr4_1:41765521-41765540 | Msa0548060:intron | 60.0% | |
| GGCAGATGCAAAGGCAAGGG+AGG | - | chr4_1:41765525-41765544 | Msa0548060:intron | 60.0% | |
| GGCAAGGGAGGGTGAGAATG+AGG | - | chr4_1:41765537-41765556 | Msa0548060:intron | 60.0% | |
| GGACAACCCTGCAGGAGAAG+TGG | - | chr4_1:41766211-41766230 | Msa0548060:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 41764734 | 41766582 | 41764734 | ID=Msa0548060;Name=Msa0548060 |
| chr4_1 | mRNA | 41764734 | 41766582 | 41764734 | ID=Msa0548060-mRNA-1;Parent=Msa0548060;Name=Msa0548060-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.33|1|1|3|0|227 |
| chr4_1 | exon | 41766264 | 41766582 | 41766264 | ID=Msa0548060-mRNA-1:exon:10733;Parent=Msa0548060-mRNA-1 |
| chr4_1 | exon | 41765769 | 41765981 | 41765769 | ID=Msa0548060-mRNA-1:exon:10732;Parent=Msa0548060-mRNA-1 |
| chr4_1 | exon | 41764734 | 41764885 | 41764734 | ID=Msa0548060-mRNA-1:exon:10731;Parent=Msa0548060-mRNA-1 |
| chr4_1 | CDS | 41766264 | 41766582 | 41766264 | ID=Msa0548060-mRNA-1:cds;Parent=Msa0548060-mRNA-1 |
| chr4_1 | CDS | 41765769 | 41765981 | 41765769 | ID=Msa0548060-mRNA-1:cds;Parent=Msa0548060-mRNA-1 |
| chr4_1 | CDS | 41764734 | 41764885 | 41764734 | ID=Msa0548060-mRNA-1:cds;Parent=Msa0548060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
