Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463140 | KEH34363.1 | 62.671 | 292 | 72 | 8 | 37 | 305 | 9 | 286 | 2.13e-101 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463140 | A0A072UZ52 | 62.671 | 292 | 72 | 8 | 37 | 305 | 9 | 286 | 1.02e-101 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa1463140 | 0.926528 | 4.142906e-91 | -8.615850e-47 |
| Msa0068630 | Msa1463140 | 0.873039 | 2.001163e-67 | -8.615850e-47 |
| Msa0071340 | Msa1463140 | 0.869584 | 2.775794e-66 | -8.615850e-47 |
| Msa1347360 | Msa1463140 | 0.836458 | 9.249185e-57 | -8.615850e-47 |
| Msa1359820 | Msa1463140 | 0.816885 | 4.390893e-52 | -8.615850e-47 |
| Msa1423990 | Msa1463140 | 0.829101 | 6.213235e-55 | -8.615850e-47 |
| Msa0639460 | Msa1463140 | 0.807682 | 4.486219e-50 | -8.615850e-47 |
| Msa0675510 | Msa1463140 | 0.919071 | 7.117411e-87 | -8.615850e-47 |
| Msa0682360 | Msa1463140 | 0.802510 | 5.421378e-49 | -8.615850e-47 |
| Msa0722510 | Msa1463140 | 0.813520 | 2.455516e-51 | -8.615850e-47 |
| Msa0818030 | Msa1463140 | 0.800182 | 1.625246e-48 | -8.615850e-47 |
| Msa0153200 | Msa1463140 | 0.985468 | 1.161811e-163 | -8.615850e-47 |
| Msa0162580 | Msa1463140 | 0.880967 | 3.547474e-70 | -8.615850e-47 |
| Msa0211680 | Msa1463140 | 0.878524 | 2.620135e-69 | -8.615850e-47 |
| Msa1232060 | Msa1463140 | 0.832191 | 1.087937e-55 | -8.615850e-47 |
| Msa1288000 | Msa1463140 | 0.829121 | 6.145053e-55 | -8.615850e-47 |
| Msa1310530 | Msa1463140 | 0.815791 | 7.714322e-52 | -8.615850e-47 |
| Msa0458420 | Msa1463140 | 0.807902 | 4.029197e-50 | -8.615850e-47 |
| Msa1006250 | Msa1463140 | 0.812680 | 3.752571e-51 | -8.615850e-47 |
| Msa1021750 | Msa1463140 | 0.819545 | 1.097655e-52 | -8.615850e-47 |
| Msa1048540 | Msa1463140 | 0.812381 | 4.361730e-51 | -8.615850e-47 |
| Msa1092990 | Msa1463140 | 0.809336 | 1.989807e-50 | -8.615850e-47 |
| Msa1100180 | Msa1463140 | 0.800243 | 1.579264e-48 | -8.615850e-47 |
| Msa0280450 | Msa1463140 | 0.835412 | 1.703801e-56 | -8.615850e-47 |
| Msa0291600 | Msa1463140 | 0.898948 | 3.214485e-77 | -8.615850e-47 |
| Msa0353690 | Msa1463140 | 0.801794 | 7.611519e-49 | -8.615850e-47 |
| Msa1131820 | Msa1463140 | 0.818846 | 1.584142e-52 | -8.615850e-47 |
| Msa1182730 | Msa1463140 | 0.835052 | 2.100281e-56 | -8.615850e-47 |
| Msa1187060 | Msa1463140 | 0.813917 | 2.007358e-51 | -8.615850e-47 |
| Msa1191210 | Msa1463140 | 0.806267 | 8.938543e-50 | -8.615850e-47 |
| Msa0548060 | Msa1463140 | 0.813463 | 2.527567e-51 | -8.615850e-47 |
| Msa0858360 | Msa1463140 | 0.820287 | 7.429733e-53 | -8.615850e-47 |
| Msa0884920 | Msa1463140 | 0.845641 | 3.579024e-59 | -8.615850e-47 |
| Msa0902020 | Msa1463140 | 0.845965 | 2.922542e-59 | -8.615850e-47 |
| Msa0912500 | Msa1463140 | 0.841636 | 4.214809e-58 | -8.615850e-47 |
| Msa0951330 | Msa1463140 | 0.802416 | 5.669810e-49 | -8.615850e-47 |
| Msa0957860 | Msa1463140 | 0.824669 | 7.119645e-54 | -8.615850e-47 |
| Msa0957960 | Msa1463140 | 0.824921 | 6.212057e-54 | -8.615850e-47 |
| Msa0963310 | Msa1463140 | 0.824548 | 7.602403e-54 | -8.615850e-47 |
| Msa0964180 | Msa1463140 | 0.806988 | 6.296292e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463140 | MtrunA17_Chr7g0243381 | 36.434 | 258 | 99 | 11 | 7 | 256 | 22 | 222 | 5.90e-29 | 113 |
| Msa1463140 | MtrunA17_Chr1g0178241 | 43.151 | 146 | 71 | 4 | 124 | 258 | 480 | 624 | 4.52e-22 | 97.8 |
| Msa1463140 | MtrunA17_Chr1g0170041 | 39.355 | 155 | 61 | 3 | 198 | 319 | 8 | 162 | 2.75e-21 | 90.1 |
| Msa1463140 | MtrunA17_Chr3g0108131 | 36.601 | 153 | 66 | 5 | 183 | 323 | 89 | 222 | 1.42e-15 | 75.5 |
| Msa1463140 | MtrunA17_Chr4g0009121 | 36.029 | 136 | 69 | 3 | 101 | 236 | 16 | 133 | 6.65e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 78 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCATCTATTGGAATATT+AGG | 0.202562 | tig0042960:-8895 | None:intergenic |
| CAGGCAGCAGACAAATTCTT+AGG | 0.259409 | tig0042960:+9248 | None:intergenic |
| TAAGACTCTTATTGACATTC+AGG | 0.281620 | tig0042960:-9778 | Msa1463140:CDS |
| GTAAAATCTTGAGTAAGTTT+TGG | 0.283477 | tig0042960:-9214 | Msa1463140:CDS |
| TACTCAAAGCACTAACTTAG+AGG | 0.290108 | tig0042960:-9429 | Msa1463140:CDS |
| GTGCATCTATTGGAATATTA+GGG | 0.295334 | tig0042960:-8894 | None:intergenic |
| ACTATAATGGATATGCAAAT+TGG | 0.307471 | tig0042960:-9497 | Msa1463140:CDS |
| TTCTTTGTGCCTTTCCTGCC+TGG | 0.315602 | tig0042960:+9005 | None:intergenic |
| AGGGGATTGGCCACCACATT+TGG | 0.331333 | tig0042960:+9467 | None:intergenic |
| CACTTCATGCTTGGTCCTTA+AGG | 0.334146 | tig0042960:+8914 | None:intergenic |
| TGAATGTCAATAAGAGTCTT+AGG | 0.335029 | tig0042960:+9780 | None:intergenic |
| AGTGGCTCTGAACTGGTAAC+AGG | 0.341475 | tig0042960:-9554 | Msa1463140:CDS |
| AGAGTGAGTTTCCTTCAAAT+TGG | 0.344618 | tig0042960:+9076 | None:intergenic |
| ATCTCAAAATCATTGTATTC+AGG | 0.352175 | tig0042960:+9701 | None:intergenic |
| GAAGATTAGTGTTCGCCTTA+AGG | 0.363673 | tig0042960:-8929 | Msa1463140:CDS |
| GGAATCCACACCCACTATAA+TGG | 0.374927 | tig0042960:-9510 | Msa1463140:CDS |
| AATTTGCATATCCATTATAG+TGG | 0.382257 | tig0042960:+9499 | None:intergenic |
| GGTGTGGATTCCTCATCATT+TGG | 0.391401 | tig0042960:+9521 | None:intergenic |
| AGTTATCCTTTCTCTTGTCT+TGG | 0.391744 | tig0042960:+9282 | None:intergenic |
| CTGCAGCATTCTCATGAAGA+TGG | 0.397971 | tig0042960:-9038 | Msa1463140:CDS |
| CAAGCATGAAGTGCATCTAT+TGG | 0.425360 | tig0042960:-8904 | Msa1463140:CDS |
| TTGCATGATCTTCATTGTAC+TGG | 0.430802 | tig0042960:+9645 | None:intergenic |
| CATATCCATTATAGTGGGTG+TGG | 0.442002 | tig0042960:+9505 | None:intergenic |
| CAATAGATGCACTTCATGCT+TGG | 0.444927 | tig0042960:+8905 | None:intergenic |
| TCATTTGAATTGCTTGAAAG+TGG | 0.457712 | tig0042960:-9572 | Msa1463140:CDS |
| CTGTGTCACTTGGTGATGCT+AGG | 0.458092 | tig0042960:-9379 | Msa1463140:CDS |
| GTTCTCCTTCCCTAGGGGAT+TGG | 0.461064 | tig0042960:+9454 | None:intergenic |
| AATCTCATCATTAGTAGTGA+TGG | 0.464578 | tig0042960:+9310 | None:intergenic |
| GAGTAAAGTTCTCCTTCCCT+AGG | 0.472040 | tig0042960:+9447 | None:intergenic |
| GCTTGAAAGTGGCTCTGAAC+TGG | 0.484212 | tig0042960:-9561 | Msa1463140:CDS |
| TCTGCTGCCTGTTTGAAAGA+TGG | 0.493890 | tig0042960:-9236 | Msa1463140:CDS |
| TGGTACTCTAGCCAATTTGA+AGG | 0.506229 | tig0042960:-9087 | Msa1463140:CDS |
| TTTATTAAACCAGGCAGGAA+AGG | 0.509370 | tig0042960:-9014 | Msa1463140:CDS |
| GTAGCATTGGGCAATTTACC+AGG | 0.509651 | tig0042960:+9404 | None:intergenic |
| GAGAATGCTGCAGAAGGTAC+TGG | 0.516616 | tig0042960:+9048 | None:intergenic |
| GTCATCAGCTGAAGCAAAAG+TGG | 0.518741 | tig0042960:+9752 | None:intergenic |
| TTTAGGCCAAGACAAGAGAA+AGG | 0.519683 | tig0042960:-9288 | Msa1463140:CDS |
| TAATTAATTCACCTTTCTCA+AGG | 0.520065 | tig0042960:+9730 | None:intergenic |
| AATGCTACTGCTGTGTCACT+TGG | 0.522950 | tig0042960:-9389 | Msa1463140:CDS |
| AGTAAAGTTCTCCTTCCCTA+GGG | 0.534611 | tig0042960:+9448 | None:intergenic |
| AGCACTAACTTAGAGGATCC+TGG | 0.534663 | tig0042960:-9422 | Msa1463140:CDS |
| AGTGACACAGCAGTAGCATT+GGG | 0.536599 | tig0042960:+9392 | None:intergenic |
| AGAAAGGATAACTTCACTGC+TGG | 0.536751 | tig0042960:-9272 | Msa1463140:CDS |
| GAAAGCTGCTAAACCTCAGA+TGG | 0.539304 | tig0042960:-8985 | Msa1463140:CDS |
| AGGCAGCAGACAAATTCTTA+GGG | 0.540266 | tig0042960:+9249 | None:intergenic |
| ATCTCATCATTAGTAGTGAT+GGG | 0.544479 | tig0042960:+9311 | None:intergenic |
| AAGTGACACAGCAGTAGCAT+TGG | 0.545658 | tig0042960:+9391 | None:intergenic |
| AATGTGGTGGCCAATCCCCT+AGG | 0.548434 | tig0042960:-9464 | Msa1463140:CDS |
| GAGCAACTGTCAAAGTTCAC+TGG | 0.554524 | tig0042960:-9129 | Msa1463140:CDS |
| TCAGCTGATGACCTTGAGAA+AGG | 0.556543 | tig0042960:-9741 | Msa1463140:intron |
| TGTGTCACTTGGTGATGCTA+GGG | 0.557943 | tig0042960:-9378 | Msa1463140:CDS |
| CACTTCTGTACCTAATGCAA+TGG | 0.567719 | tig0042960:-9675 | Msa1463140:CDS |
| AGTTGCTCTTGTGAGCCTCA+TGG | 0.568187 | tig0042960:+9144 | None:intergenic |
| GACAATACTGTTACCATCTG+AGG | 0.578982 | tig0042960:+8972 | None:intergenic |
| ATTTGCATATCCATTATAGT+GGG | 0.582568 | tig0042960:+9500 | None:intergenic |
| GTAGTGATGGGAGAAATGAT+AGG | 0.588469 | tig0042960:+9323 | None:intergenic |
| CTTCATGAGAATGCTGCAGA+AGG | 0.588696 | tig0042960:+9042 | None:intergenic |
| CCTCACCACATTGTAGCAGT+TGG | 0.594959 | tig0042960:-9813 | Msa1463140:CDS |
| GTGGCTCTGAACTGGTAACA+GGG | 0.596218 | tig0042960:-9553 | Msa1463140:CDS |
| GACTCTTATTGACATTCAGG+AGG | 0.614109 | tig0042960:-9775 | Msa1463140:CDS |
| CTCTGAACTGGTAACAGGGG+AGG | 0.618737 | tig0042960:-9549 | Msa1463140:CDS |
| AACCACTAAAAGAGTTCACA+AGG | 0.631197 | tig0042960:-9934 | Msa1463140:CDS |
| ATGTGGTGGCCAATCCCCTA+GGG | 0.634542 | tig0042960:-9463 | Msa1463140:CDS |
| GTACAATGAAGATCATGCAA+TGG | 0.640941 | tig0042960:-9642 | Msa1463140:CDS |
| GGAGGCTAAACCAAATGATG+AGG | 0.641472 | tig0042960:-9531 | Msa1463140:CDS |
| GCATCAACAACTGTGGACAC+AGG | 0.644340 | tig0042960:+9855 | None:intergenic |
| GAGCATGATATAGACACAGA+TGG | 0.650912 | tig0042960:-9107 | Msa1463140:CDS |
| GGTGGCCAATCCCCTAGGGA+AGG | 0.651336 | tig0042960:-9459 | Msa1463140:CDS |
| TGATGCTACTGATAGCACAT+TGG | 0.652116 | tig0042960:-9177 | Msa1463140:CDS |
| TTGCATTAGGTACAGAAGTG+AGG | 0.653763 | tig0042960:+9678 | None:intergenic |
| ATGTCAATAAGAGTCTTAGG+AGG | 0.658646 | tig0042960:+9783 | None:intergenic |
| TGCATCTATTGGAATATTAG+GGG | 0.660845 | tig0042960:-8893 | None:intergenic |
| AACAGTAGCATCAACAACTG+TGG | 0.663828 | tig0042960:+9848 | None:intergenic |
| GTAAAGTTCTCCTTCCCTAG+GGG | 0.674681 | tig0042960:+9449 | None:intergenic |
| TGGCTCTGAACTGGTAACAG+GGG | 0.677736 | tig0042960:-9552 | Msa1463140:CDS |
| TATTACCAACTGCTACAATG+TGG | 0.683737 | tig0042960:+9808 | None:intergenic |
| CCAACTGCTACAATGTGGTG+AGG | 0.690812 | tig0042960:+9813 | None:intergenic |
| ATTGGAACATACTGACCATG+AGG | 0.691070 | tig0042960:-9159 | Msa1463140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTCAAATTATCATGAAAAAT+AGG | + | tig0042960:9503-9522 | None:intergenic | 20.0% |
| !!! | TAAAATCTTGAGTAAGTTTT+GGG | - | tig0042960:9640-9659 | Msa1463140:CDS | 20.0% |
| !! | GTCAAATTATCATGAAAAAT+AGG | + | tig0042960:9503-9522 | None:intergenic | 20.0% |
| !!! | TAAAATCTTGAGTAAGTTTT+GGG | - | tig0042960:9640-9659 | Msa1463140:CDS | 20.0% |
| ! | TAATTAATTCACCTTTCTCA+AGG | + | tig0042960:9126-9145 | None:intergenic | 25.0% |
| ! | ATCTCAAAATCATTGTATTC+AGG | + | tig0042960:9155-9174 | None:intergenic | 25.0% |
| ! | ATTTGCATATCCATTATAGT+GGG | + | tig0042960:9356-9375 | None:intergenic | 25.0% |
| ! | AATTTGCATATCCATTATAG+TGG | + | tig0042960:9357-9376 | None:intergenic | 25.0% |
| !!! | ACTATAATGGATATGCAAAT+TGG | - | tig0042960:9356-9375 | Msa1463140:CDS | 25.0% |
| ! | AATTGGAAAAAATCCAAATG+TGG | - | tig0042960:9373-9392 | Msa1463140:CDS | 25.0% |
| !! | ACTACTAATGATGAGATTTT+AGG | - | tig0042960:9548-9567 | Msa1463140:CDS | 25.0% |
| !! | GTAAAATCTTGAGTAAGTTT+TGG | - | tig0042960:9639-9658 | Msa1463140:CDS | 25.0% |
| !! | AAAATCTTGAGTAAGTTTTG+GGG | - | tig0042960:9641-9660 | Msa1463140:CDS | 25.0% |
| ! | TAATTAATTCACCTTTCTCA+AGG | + | tig0042960:9126-9145 | None:intergenic | 25.0% |
| ! | ATCTCAAAATCATTGTATTC+AGG | + | tig0042960:9155-9174 | None:intergenic | 25.0% |
| ! | ATTTGCATATCCATTATAGT+GGG | + | tig0042960:9356-9375 | None:intergenic | 25.0% |
| ! | AATTTGCATATCCATTATAG+TGG | + | tig0042960:9357-9376 | None:intergenic | 25.0% |
| !!! | ACTATAATGGATATGCAAAT+TGG | - | tig0042960:9356-9375 | Msa1463140:CDS | 25.0% |
| ! | AATTGGAAAAAATCCAAATG+TGG | - | tig0042960:9373-9392 | Msa1463140:CDS | 25.0% |
| !! | ACTACTAATGATGAGATTTT+AGG | - | tig0042960:9548-9567 | Msa1463140:CDS | 25.0% |
| !! | GTAAAATCTTGAGTAAGTTT+TGG | - | tig0042960:9639-9658 | Msa1463140:CDS | 25.0% |
| !! | AAAATCTTGAGTAAGTTTTG+GGG | - | tig0042960:9641-9660 | Msa1463140:CDS | 25.0% |
| ! | AGCTTAGTACTTTTCTTGTT+AGG | + | tig0042960:8977-8996 | None:intergenic | 30.0% |
| TGAATGTCAATAAGAGTCTT+AGG | + | tig0042960:9076-9095 | None:intergenic | 30.0% | |
| TAAGACTCTTATTGACATTC+AGG | - | tig0042960:9075-9094 | Msa1463140:CDS | 30.0% | |
| TCATTTGAATTGCTTGAAAG+TGG | - | tig0042960:9281-9300 | Msa1463140:CDS | 30.0% | |
| ATCTCATCATTAGTAGTGAT+GGG | + | tig0042960:9545-9564 | None:intergenic | 30.0% | |
| AATCTCATCATTAGTAGTGA+TGG | + | tig0042960:9546-9565 | None:intergenic | 30.0% | |
| ! | GATTTTACCATCTTTCAAAC+AGG | + | tig0042960:9627-9646 | None:intergenic | 30.0% |
| !! | AAATCTTGAGTAAGTTTTGG+GGG | - | tig0042960:9642-9661 | Msa1463140:CDS | 30.0% |
| !!! | GAAGATGGTTTTATTAAACC+AGG | - | tig0042960:9830-9849 | Msa1463140:CDS | 30.0% |
| ! | AGCTTAGTACTTTTCTTGTT+AGG | + | tig0042960:8977-8996 | None:intergenic | 30.0% |
| TGAATGTCAATAAGAGTCTT+AGG | + | tig0042960:9076-9095 | None:intergenic | 30.0% | |
| TAAGACTCTTATTGACATTC+AGG | - | tig0042960:9075-9094 | Msa1463140:CDS | 30.0% | |
| TCATTTGAATTGCTTGAAAG+TGG | - | tig0042960:9281-9300 | Msa1463140:CDS | 30.0% | |
| ATCTCATCATTAGTAGTGAT+GGG | + | tig0042960:9545-9564 | None:intergenic | 30.0% | |
| AATCTCATCATTAGTAGTGA+TGG | + | tig0042960:9546-9565 | None:intergenic | 30.0% | |
| ! | GATTTTACCATCTTTCAAAC+AGG | + | tig0042960:9627-9646 | None:intergenic | 30.0% |
| !! | AAATCTTGAGTAAGTTTTGG+GGG | - | tig0042960:9642-9661 | Msa1463140:CDS | 30.0% |
| !!! | GAAGATGGTTTTATTAAACC+AGG | - | tig0042960:9830-9849 | Msa1463140:CDS | 30.0% |
| ! | TTGTGAACTCTTTTAGTGGT+TGG | + | tig0042960:8920-8939 | None:intergenic | 35.0% |
| AACCACTAAAAGAGTTCACA+AGG | - | tig0042960:8919-8938 | Msa1463140:CDS | 35.0% | |
| TATTACCAACTGCTACAATG+TGG | + | tig0042960:9048-9067 | None:intergenic | 35.0% | |
| ATGTCAATAAGAGTCTTAGG+AGG | + | tig0042960:9073-9092 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGAACCATTGCATT+AGG | + | tig0042960:9191-9210 | None:intergenic | 35.0% |
| TTGCATGATCTTCATTGTAC+TGG | + | tig0042960:9211-9230 | None:intergenic | 35.0% | |
| GTACAATGAAGATCATGCAA+TGG | - | tig0042960:9211-9230 | Msa1463140:CDS | 35.0% | |
| TGGAAAAAATCCAAATGTGG+TGG | - | tig0042960:9376-9395 | Msa1463140:CDS | 35.0% | |
| ! | TACTCAAAGCACTAACTTAG+AGG | - | tig0042960:9424-9443 | Msa1463140:CDS | 35.0% |
| AGTTATCCTTTCTCTTGTCT+TGG | + | tig0042960:9574-9593 | None:intergenic | 35.0% | |
| !!! | AATCTTGAGTAAGTTTTGGG+GGG | - | tig0042960:9643-9662 | Msa1463140:CDS | 35.0% |
| AGAGTGAGTTTCCTTCAAAT+TGG | + | tig0042960:9780-9799 | None:intergenic | 35.0% | |
| !!! | ATGGTTTTATTAAACCAGGC+AGG | - | tig0042960:9834-9853 | Msa1463140:CDS | 35.0% |
| TTTATTAAACCAGGCAGGAA+AGG | - | tig0042960:9839-9858 | Msa1463140:CDS | 35.0% | |
| ! | TTGTGAACTCTTTTAGTGGT+TGG | + | tig0042960:8920-8939 | None:intergenic | 35.0% |
| AACCACTAAAAGAGTTCACA+AGG | - | tig0042960:8919-8938 | Msa1463140:CDS | 35.0% | |
| TATTACCAACTGCTACAATG+TGG | + | tig0042960:9048-9067 | None:intergenic | 35.0% | |
| ATGTCAATAAGAGTCTTAGG+AGG | + | tig0042960:9073-9092 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGAACCATTGCATT+AGG | + | tig0042960:9191-9210 | None:intergenic | 35.0% |
| TTGCATGATCTTCATTGTAC+TGG | + | tig0042960:9211-9230 | None:intergenic | 35.0% | |
| GTACAATGAAGATCATGCAA+TGG | - | tig0042960:9211-9230 | Msa1463140:CDS | 35.0% | |
| TGGAAAAAATCCAAATGTGG+TGG | - | tig0042960:9376-9395 | Msa1463140:CDS | 35.0% | |
| ! | TACTCAAAGCACTAACTTAG+AGG | - | tig0042960:9424-9443 | Msa1463140:CDS | 35.0% |
| AGTTATCCTTTCTCTTGTCT+TGG | + | tig0042960:9574-9593 | None:intergenic | 35.0% | |
| !!! | AATCTTGAGTAAGTTTTGGG+GGG | - | tig0042960:9643-9662 | Msa1463140:CDS | 35.0% |
| AGAGTGAGTTTCCTTCAAAT+TGG | + | tig0042960:9780-9799 | None:intergenic | 35.0% | |
| !!! | ATGGTTTTATTAAACCAGGC+AGG | - | tig0042960:9834-9853 | Msa1463140:CDS | 35.0% |
| TTTATTAAACCAGGCAGGAA+AGG | - | tig0042960:9839-9858 | Msa1463140:CDS | 35.0% | |
| ! | CACCTTGTGAACTCTTTTAG+TGG | + | tig0042960:8924-8943 | None:intergenic | 40.0% |
| AACAGTAGCATCAACAACTG+TGG | + | tig0042960:9008-9027 | None:intergenic | 40.0% | |
| GACTCTTATTGACATTCAGG+AGG | - | tig0042960:9078-9097 | Msa1463140:CDS | 40.0% | |
| TTGCATTAGGTACAGAAGTG+AGG | + | tig0042960:9178-9197 | None:intergenic | 40.0% | |
| CACTTCTGTACCTAATGCAA+TGG | - | tig0042960:9178-9197 | Msa1463140:CDS | 40.0% | |
| !! | CATATCCATTATAGTGGGTG+TGG | + | tig0042960:9351-9370 | None:intergenic | 40.0% |
| AGTAAAGTTCTCCTTCCCTA+GGG | + | tig0042960:9408-9427 | None:intergenic | 40.0% | |
| ! | GTAGTGATGGGAGAAATGAT+AGG | + | tig0042960:9533-9552 | None:intergenic | 40.0% |
| TTTAGGCCAAGACAAGAGAA+AGG | - | tig0042960:9565-9584 | Msa1463140:CDS | 40.0% | |
| AGAAAGGATAACTTCACTGC+TGG | - | tig0042960:9581-9600 | Msa1463140:CDS | 40.0% | |
| AGGCAGCAGACAAATTCTTA+GGG | + | tig0042960:9607-9626 | None:intergenic | 40.0% | |
| TGATGCTACTGATAGCACAT+TGG | - | tig0042960:9676-9695 | Msa1463140:CDS | 40.0% | |
| ATTGGAACATACTGACCATG+AGG | - | tig0042960:9694-9713 | Msa1463140:CDS | 40.0% | |
| GAGCATGATATAGACACAGA+TGG | - | tig0042960:9746-9765 | Msa1463140:CDS | 40.0% | |
| TGGTACTCTAGCCAATTTGA+AGG | - | tig0042960:9766-9785 | Msa1463140:CDS | 40.0% | |
| GACAATACTGTTACCATCTG+AGG | + | tig0042960:9884-9903 | None:intergenic | 40.0% | |
| GAAGATTAGTGTTCGCCTTA+AGG | - | tig0042960:9924-9943 | Msa1463140:CDS | 40.0% | |
| CAATAGATGCACTTCATGCT+TGG | + | tig0042960:9951-9970 | None:intergenic | 40.0% | |
| CAAGCATGAAGTGCATCTAT+TGG | - | tig0042960:9949-9968 | Msa1463140:CDS | 40.0% | |
| ! | CACCTTGTGAACTCTTTTAG+TGG | + | tig0042960:8924-8943 | None:intergenic | 40.0% |
| AACAGTAGCATCAACAACTG+TGG | + | tig0042960:9008-9027 | None:intergenic | 40.0% | |
| GACTCTTATTGACATTCAGG+AGG | - | tig0042960:9078-9097 | Msa1463140:CDS | 40.0% | |
| TTGCATTAGGTACAGAAGTG+AGG | + | tig0042960:9178-9197 | None:intergenic | 40.0% | |
| CACTTCTGTACCTAATGCAA+TGG | - | tig0042960:9178-9197 | Msa1463140:CDS | 40.0% | |
| !! | CATATCCATTATAGTGGGTG+TGG | + | tig0042960:9351-9370 | None:intergenic | 40.0% |
| AGTAAAGTTCTCCTTCCCTA+GGG | + | tig0042960:9408-9427 | None:intergenic | 40.0% | |
| ! | GTAGTGATGGGAGAAATGAT+AGG | + | tig0042960:9533-9552 | None:intergenic | 40.0% |
| TTTAGGCCAAGACAAGAGAA+AGG | - | tig0042960:9565-9584 | Msa1463140:CDS | 40.0% | |
| AGAAAGGATAACTTCACTGC+TGG | - | tig0042960:9581-9600 | Msa1463140:CDS | 40.0% | |
| AGGCAGCAGACAAATTCTTA+GGG | + | tig0042960:9607-9626 | None:intergenic | 40.0% | |
| TGATGCTACTGATAGCACAT+TGG | - | tig0042960:9676-9695 | Msa1463140:CDS | 40.0% | |
| ATTGGAACATACTGACCATG+AGG | - | tig0042960:9694-9713 | Msa1463140:CDS | 40.0% | |
| GAGCATGATATAGACACAGA+TGG | - | tig0042960:9746-9765 | Msa1463140:CDS | 40.0% | |
| TGGTACTCTAGCCAATTTGA+AGG | - | tig0042960:9766-9785 | Msa1463140:CDS | 40.0% | |
| GACAATACTGTTACCATCTG+AGG | + | tig0042960:9884-9903 | None:intergenic | 40.0% | |
| GAAGATTAGTGTTCGCCTTA+AGG | - | tig0042960:9924-9943 | Msa1463140:CDS | 40.0% | |
| CAATAGATGCACTTCATGCT+TGG | + | tig0042960:9951-9970 | None:intergenic | 40.0% | |
| CAAGCATGAAGTGCATCTAT+TGG | - | tig0042960:9949-9968 | Msa1463140:CDS | 40.0% | |
| GTCATCAGCTGAAGCAAAAG+TGG | + | tig0042960:9104-9123 | None:intergenic | 45.0% | |
| TCAGCTGATGACCTTGAGAA+AGG | - | tig0042960:9112-9131 | Msa1463140:CDS | 45.0% | |
| GGAGGCTAAACCAAATGATG+AGG | - | tig0042960:9322-9341 | Msa1463140:CDS | 45.0% | |
| GGTGTGGATTCCTCATCATT+TGG | + | tig0042960:9335-9354 | None:intergenic | 45.0% | |
| GGAATCCACACCCACTATAA+TGG | - | tig0042960:9343-9362 | Msa1463140:CDS | 45.0% | |
| GTAAAGTTCTCCTTCCCTAG+GGG | + | tig0042960:9407-9426 | None:intergenic | 45.0% | |
| GAGTAAAGTTCTCCTTCCCT+AGG | + | tig0042960:9409-9428 | None:intergenic | 45.0% | |
| AGCACTAACTTAGAGGATCC+TGG | - | tig0042960:9431-9450 | Msa1463140:CDS | 45.0% | |
| ! | GTAGCATTGGGCAATTTACC+AGG | + | tig0042960:9452-9471 | None:intergenic | 45.0% |
| AGTGACACAGCAGTAGCATT+GGG | + | tig0042960:9464-9483 | None:intergenic | 45.0% | |
| AAGTGACACAGCAGTAGCAT+TGG | + | tig0042960:9465-9484 | None:intergenic | 45.0% | |
| ! | AATGCTACTGCTGTGTCACT+TGG | - | tig0042960:9464-9483 | Msa1463140:CDS | 45.0% |
| !! | TGTGTCACTTGGTGATGCTA+GGG | - | tig0042960:9475-9494 | Msa1463140:CDS | 45.0% |
| CAGGCAGCAGACAAATTCTT+AGG | + | tig0042960:9608-9627 | None:intergenic | 45.0% | |
| TCTGCTGCCTGTTTGAAAGA+TGG | - | tig0042960:9617-9636 | Msa1463140:CDS | 45.0% | |
| GAGCAACTGTCAAAGTTCAC+TGG | - | tig0042960:9724-9743 | Msa1463140:intron | 45.0% | |
| CTTCATGAGAATGCTGCAGA+AGG | + | tig0042960:9814-9833 | None:intergenic | 45.0% | |
| CTGCAGCATTCTCATGAAGA+TGG | - | tig0042960:9815-9834 | Msa1463140:CDS | 45.0% | |
| GAAAGCTGCTAAACCTCAGA+TGG | - | tig0042960:9868-9887 | Msa1463140:CDS | 45.0% | |
| CACTTCATGCTTGGTCCTTA+AGG | + | tig0042960:9942-9961 | None:intergenic | 45.0% | |
| GTCATCAGCTGAAGCAAAAG+TGG | + | tig0042960:9104-9123 | None:intergenic | 45.0% | |
| TCAGCTGATGACCTTGAGAA+AGG | - | tig0042960:9112-9131 | Msa1463140:CDS | 45.0% | |
| GGAGGCTAAACCAAATGATG+AGG | - | tig0042960:9322-9341 | Msa1463140:CDS | 45.0% | |
| GGTGTGGATTCCTCATCATT+TGG | + | tig0042960:9335-9354 | None:intergenic | 45.0% | |
| GGAATCCACACCCACTATAA+TGG | - | tig0042960:9343-9362 | Msa1463140:CDS | 45.0% | |
| GTAAAGTTCTCCTTCCCTAG+GGG | + | tig0042960:9407-9426 | None:intergenic | 45.0% | |
| GAGTAAAGTTCTCCTTCCCT+AGG | + | tig0042960:9409-9428 | None:intergenic | 45.0% | |
| AGCACTAACTTAGAGGATCC+TGG | - | tig0042960:9431-9450 | Msa1463140:CDS | 45.0% | |
| ! | GTAGCATTGGGCAATTTACC+AGG | + | tig0042960:9452-9471 | None:intergenic | 45.0% |
| AGTGACACAGCAGTAGCATT+GGG | + | tig0042960:9464-9483 | None:intergenic | 45.0% | |
| AAGTGACACAGCAGTAGCAT+TGG | + | tig0042960:9465-9484 | None:intergenic | 45.0% | |
| ! | AATGCTACTGCTGTGTCACT+TGG | - | tig0042960:9464-9483 | Msa1463140:CDS | 45.0% |
| !! | TGTGTCACTTGGTGATGCTA+GGG | - | tig0042960:9475-9494 | Msa1463140:CDS | 45.0% |
| CAGGCAGCAGACAAATTCTT+AGG | + | tig0042960:9608-9627 | None:intergenic | 45.0% | |
| TCTGCTGCCTGTTTGAAAGA+TGG | - | tig0042960:9617-9636 | Msa1463140:CDS | 45.0% | |
| GAGCAACTGTCAAAGTTCAC+TGG | - | tig0042960:9724-9743 | Msa1463140:intron | 45.0% | |
| CTTCATGAGAATGCTGCAGA+AGG | + | tig0042960:9814-9833 | None:intergenic | 45.0% | |
| CTGCAGCATTCTCATGAAGA+TGG | - | tig0042960:9815-9834 | Msa1463140:CDS | 45.0% | |
| GAAAGCTGCTAAACCTCAGA+TGG | - | tig0042960:9868-9887 | Msa1463140:CDS | 45.0% | |
| CACTTCATGCTTGGTCCTTA+AGG | + | tig0042960:9942-9961 | None:intergenic | 45.0% | |
| GCATCAACAACTGTGGACAC+AGG | + | tig0042960:9001-9020 | None:intergenic | 50.0% | |
| CCAACTGCTACAATGTGGTG+AGG | + | tig0042960:9043-9062 | None:intergenic | 50.0% | |
| CCTCACCACATTGTAGCAGT+TGG | - | tig0042960:9040-9059 | Msa1463140:CDS | 50.0% | |
| !! | GCTTGAAAGTGGCTCTGAAC+TGG | - | tig0042960:9292-9311 | Msa1463140:CDS | 50.0% |
| !! | AGTGGCTCTGAACTGGTAAC+AGG | - | tig0042960:9299-9318 | Msa1463140:CDS | 50.0% |
| !! | GTGGCTCTGAACTGGTAACA+GGG | - | tig0042960:9300-9319 | Msa1463140:CDS | 50.0% |
| !! | TGGCTCTGAACTGGTAACAG+GGG | - | tig0042960:9301-9320 | Msa1463140:CDS | 50.0% |
| !! | CTGTGTCACTTGGTGATGCT+AGG | - | tig0042960:9474-9493 | Msa1463140:CDS | 50.0% |
| !!! | GAGTAAGTTTTGGGGGGATG+AGG | - | tig0042960:9649-9668 | Msa1463140:CDS | 50.0% |
| AGTTGCTCTTGTGAGCCTCA+TGG | + | tig0042960:9712-9731 | None:intergenic | 50.0% | |
| ! | GAGAATGCTGCAGAAGGTAC+TGG | + | tig0042960:9808-9827 | None:intergenic | 50.0% |
| TTCTTTGTGCCTTTCCTGCC+TGG | + | tig0042960:9851-9870 | None:intergenic | 50.0% | |
| GCATCAACAACTGTGGACAC+AGG | + | tig0042960:9001-9020 | None:intergenic | 50.0% | |
| CCAACTGCTACAATGTGGTG+AGG | + | tig0042960:9043-9062 | None:intergenic | 50.0% | |
| CCTCACCACATTGTAGCAGT+TGG | - | tig0042960:9040-9059 | Msa1463140:CDS | 50.0% | |
| !! | GCTTGAAAGTGGCTCTGAAC+TGG | - | tig0042960:9292-9311 | Msa1463140:CDS | 50.0% |
| !! | AGTGGCTCTGAACTGGTAAC+AGG | - | tig0042960:9299-9318 | Msa1463140:CDS | 50.0% |
| !! | GTGGCTCTGAACTGGTAACA+GGG | - | tig0042960:9300-9319 | Msa1463140:CDS | 50.0% |
| !! | TGGCTCTGAACTGGTAACAG+GGG | - | tig0042960:9301-9320 | Msa1463140:CDS | 50.0% |
| !! | CTGTGTCACTTGGTGATGCT+AGG | - | tig0042960:9474-9493 | Msa1463140:CDS | 50.0% |
| !!! | GAGTAAGTTTTGGGGGGATG+AGG | - | tig0042960:9649-9668 | Msa1463140:CDS | 50.0% |
| AGTTGCTCTTGTGAGCCTCA+TGG | + | tig0042960:9712-9731 | None:intergenic | 50.0% | |
| ! | GAGAATGCTGCAGAAGGTAC+TGG | + | tig0042960:9808-9827 | None:intergenic | 50.0% |
| TTCTTTGTGCCTTTCCTGCC+TGG | + | tig0042960:9851-9870 | None:intergenic | 50.0% | |
| CTCTGAACTGGTAACAGGGG+AGG | - | tig0042960:9304-9323 | Msa1463140:CDS | 55.0% | |
| !! | AGGGGATTGGCCACCACATT+TGG | + | tig0042960:9389-9408 | None:intergenic | 55.0% |
| AATGTGGTGGCCAATCCCCT+AGG | - | tig0042960:9389-9408 | Msa1463140:CDS | 55.0% | |
| ATGTGGTGGCCAATCCCCTA+GGG | - | tig0042960:9390-9409 | Msa1463140:CDS | 55.0% | |
| GTTCTCCTTCCCTAGGGGAT+TGG | + | tig0042960:9402-9421 | None:intergenic | 55.0% | |
| CTCTGAACTGGTAACAGGGG+AGG | - | tig0042960:9304-9323 | Msa1463140:CDS | 55.0% | |
| !! | AGGGGATTGGCCACCACATT+TGG | + | tig0042960:9389-9408 | None:intergenic | 55.0% |
| AATGTGGTGGCCAATCCCCT+AGG | - | tig0042960:9389-9408 | Msa1463140:CDS | 55.0% | |
| ATGTGGTGGCCAATCCCCTA+GGG | - | tig0042960:9390-9409 | Msa1463140:CDS | 55.0% | |
| GTTCTCCTTCCCTAGGGGAT+TGG | + | tig0042960:9402-9421 | None:intergenic | 55.0% | |
| GGTGGCCAATCCCCTAGGGA+AGG | - | tig0042960:9394-9413 | Msa1463140:CDS | 65.0% | |
| GGTGGCCAATCCCCTAGGGA+AGG | - | tig0042960:9394-9413 | Msa1463140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042960 | gene | 8896 | 9979 | 8896 | ID=Msa1463140;Name=Msa1463140 |
| tig0042960 | mRNA | 8896 | 9979 | 8896 | ID=Msa1463140-mRNA-1;Parent=Msa1463140;Name=Msa1463140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|355 |
| tig0042960 | exon | 9742 | 9979 | 9742 | ID=Msa1463140-mRNA-1:exon:23900;Parent=Msa1463140-mRNA-1 |
| tig0042960 | exon | 8896 | 9725 | 8896 | ID=Msa1463140-mRNA-1:exon:23899;Parent=Msa1463140-mRNA-1 |
| tig0042960 | CDS | 9742 | 9979 | 9742 | ID=Msa1463140-mRNA-1:cds;Parent=Msa1463140-mRNA-1 |
| tig0042960 | CDS | 8896 | 9725 | 8896 | ID=Msa1463140-mRNA-1:cds;Parent=Msa1463140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
