AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741600 MtrunA17_Chr5g0442981 93.443 183 7 2 1 183 1 178 6.99e-112 316
Msa0741600 MtrunA17_Chr7g0228271 69.565 46 14 0 86 131 15 60 6.35e-17 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741600 AT2G42975.1 80.342 117 19 2 68 183 74 187 4.18e-60 186

Find 43 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAGGCCTTGGTAGTAAA+TGG 0.234094 5_1:+61306768 None:intergenic
ATCTTCTTCTCGTGCACAAC+TGG 0.315548 5_1:-61308102 Msa0741600:CDS
GTAATAGTGAGTTTGATAAT+TGG 0.323795 5_1:+61309593 None:intergenic
TCGTGCACAACTGGATCTTT+TGG 0.328038 5_1:-61308093 Msa0741600:CDS
TAATTCATATAAAACCAAAA+TGG 0.363379 5_1:-61309648 Msa0741600:five_prime_UTR
TCTGAGGATGATTCTTCAAT+TGG 0.371085 5_1:-61309387 Msa0741600:intron
CTTCCACCTCTTATAATACT+AGG 0.378568 5_1:-61306887 Msa0741600:CDS
CTAGGAATAGCTATATTAAC+TGG 0.405799 5_1:-61306869 Msa0741600:CDS
GACAGGCCTTGGTAGTAAAT+GGG 0.410792 5_1:+61306769 None:intergenic
CAATCACAAGGGACTGAAAC+CGG 0.442863 5_1:-61309414 Msa0741600:CDS
GGTAATTAAATTAATATTTG+TGG 0.447236 5_1:-61309692 Msa0741600:five_prime_UTR
TCGCGAACAGCTTGCGCAGT+TGG 0.451182 5_1:-61307083 Msa0741600:CDS
TTGCGCAGTTGGTTGGAGAA+AGG 0.457947 5_1:-61307072 Msa0741600:CDS
TGCGCAGTTGGTTGGAGAAA+GGG 0.462113 5_1:-61307071 Msa0741600:CDS
TTCTATTTCTAGTTCTATGT+AGG 0.483900 5_1:+61309740 None:intergenic
AGAAGTGGTGGTTAGATTGA+TGG 0.485237 5_1:+61309527 None:intergenic
GCTATTCCTAGTATTATAAG+AGG 0.488609 5_1:+61306881 None:intergenic
GATGATTTCAGCCTTCCCTT+AGG 0.492206 5_1:-61307046 Msa0741600:CDS
TGTGTGAGAAAGGAAGGGCT+TGG 0.519357 5_1:+61309495 None:intergenic
AATTAATATTTGTGGTAGTG+AGG 0.534294 5_1:-61309684 Msa0741600:five_prime_UTR
GGTTAGATTGATGGTGGCCA+TGG 0.534595 5_1:+61309536 None:intergenic
GAACAGCTTGCGCAGTTGGT+TGG 0.536982 5_1:-61307079 Msa0741600:CDS
TTGAGACACAAGTTCAAGGT+TGG 0.538320 5_1:-61309764 Msa0741600:five_prime_UTR
AGTAAATATATTATGACTCA+AGG 0.542225 5_1:+61306830 None:intergenic
GCTTGGATGAAGAGAAGAAG+TGG 0.571593 5_1:+61309512 None:intergenic
AATTACCCCATTTACTACCA+AGG 0.574059 5_1:-61306775 Msa0741600:three_prime_UTR
ATCTAAATGAAGTGTCTCAA+AGG 0.575590 5_1:-61306952 Msa0741600:CDS
ACTTTGTGTATGTGTGATCA+AGG 0.576668 5_1:+61309716 None:intergenic
AGAATCATCCTCAGAAACTC+CGG 0.580828 5_1:+61309395 None:intergenic
GACTGAAACCGGAGTTTCTG+AGG 0.581814 5_1:-61309403 Msa0741600:CDS
ATTCCTAGTATTATAAGAGG+TGG 0.585295 5_1:+61306884 None:intergenic
TCTACAAGCTCATCAGTCAC+TGG 0.588562 5_1:-61308059 Msa0741600:intron
AAAACATGTGCTCAATCACA+AGG 0.605787 5_1:-61309426 Msa0741600:CDS
CTTCTAGGTTATGAAAGTGA+TGG 0.609052 5_1:-61307127 Msa0741600:intron
TCTCATGAAGCAAAGTTCCA+TGG 0.612827 5_1:-61309553 Msa0741600:exon
AAGCATGGTTGAATTTGATG+AGG 0.629627 5_1:+61309460 None:intergenic
ACAGGCCTTGGTAGTAAATG+GGG 0.636091 5_1:+61306770 None:intergenic
TTATATGAATTAGACAAAGG+CGG 0.649549 5_1:+61309659 None:intergenic
TGGATGAAGAGAAGAAGTGG+TGG 0.661347 5_1:+61309515 None:intergenic
TGATCACACATACACAAAGT+CGG 0.661350 5_1:-61309713 Msa0741600:five_prime_UTR
AAACATGTGCTCAATCACAA+GGG 0.709012 5_1:-61309425 Msa0741600:CDS
AGTTCTTAACAACATCACAA+AGG 0.710069 5_1:-61306997 Msa0741600:CDS
AGTGGTGGTTAGATTGATGG+TGG 0.725189 5_1:+61309530 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATATATTAATATAA+AGG + chr5_1:61307637-61307656 None:intergenic 0.0%
!! TTCAATTTAATAAAAAAAGT+GGG + chr5_1:61307178-61307197 None:intergenic 10.0%
!! ATTCAATTTAATAAAAAAAG+TGG + chr5_1:61307179-61307198 None:intergenic 10.0%
!! AATTTATTTAATATCGAAAT+TGG - chr5_1:61308003-61308022 Msa0741600:intron 10.0%
!! GGTAATTAAATTAATATTTG+TGG - chr5_1:61306825-61306844 Msa0741600:three_prime_UTR 15.0%
!! TAATTCATATAAAACCAAAA+TGG - chr5_1:61306869-61306888 Msa0741600:CDS 15.0%
!! AATAATTTCCAGTAAATTTA+TGG - chr5_1:61307425-61307444 Msa0741600:intron 15.0%
!! ATAATTTCCAGTAAATTTAT+GGG - chr5_1:61307426-61307445 Msa0741600:intron 15.0%
!! TTAATTAAATGTACCTAAAA+AGG + chr5_1:61307766-61307785 None:intergenic 15.0%
!! CATTAAATTAATGATGTATA+CGG + chr5_1:61307801-61307820 None:intergenic 15.0%
!!! AAATCAAATTTTGCTTATAA+TGG - chr5_1:61307829-61307848 Msa0741600:intron 15.0%
!!! CCTTTCAAAAAAATTATTTT+TGG + chr5_1:61308698-61308717 None:intergenic 15.0%
!!! CCAAAAATAATTTTTTTGAA+AGG - chr5_1:61308695-61308714 Msa0741600:intron 15.0%
!!! GTTTTATATGAATTAGACAA+AGG + chr5_1:61306864-61306883 None:intergenic 20.0%
!!! ATAATTGGCATTGAAAAAAT+TGG + chr5_1:61306912-61306931 None:intergenic 20.0%
!! TTTAATAAAAAAAGTGGGAT+AGG + chr5_1:61307173-61307192 None:intergenic 20.0%
!! ATTGAATTCAAACATTAGTA+TGG - chr5_1:61307192-61307211 Msa0741600:intron 20.0%
!!! GATATATTTTTCTCCTTTTT+TGG + chr5_1:61307382-61307401 None:intergenic 20.0%
!! TAAATTTCCCATAAATTTAC+TGG + chr5_1:61307436-61307455 None:intergenic 20.0%
!! TATGGGAAATTTATAATTTG+TGG - chr5_1:61307443-61307462 Msa0741600:intron 20.0%
!!! ATGGGAAATTTATAATTTGT+GGG - chr5_1:61307444-61307463 Msa0741600:intron 20.0%
!! CAAAAATTGGTAAAAATGAA+AGG + chr5_1:61307888-61307907 None:intergenic 20.0%
!!! ACCAATTTTTGTTTTTAGTT+TGG - chr5_1:61307897-61307916 Msa0741600:intron 20.0%
!! ACCAAACTAAAAACAAAAAT+TGG + chr5_1:61307901-61307920 None:intergenic 20.0%
!!! AAATATACTAGTTTTCTCTT+TGG - chr5_1:61307954-61307973 Msa0741600:intron 20.0%
!! GGACTAAAATAAATATTAGA+TGG + chr5_1:61308030-61308049 None:intergenic 20.0%
!! CCAACATTATTCTTATTATT+TGG + chr5_1:61308144-61308163 None:intergenic 20.0%
!! CCAAATAATAAGAATAATGT+TGG - chr5_1:61308141-61308160 Msa0741600:intron 20.0%
!! TTTAATGCATTCTATTTGAT+TGG - chr5_1:61308173-61308192 Msa0741600:intron 20.0%
!! AAAAGTCGAAGAAAATAAAA+CGG - chr5_1:61308198-61308217 Msa0741600:intron 20.0%
!!! TTTTGATGACTTTTATTGTT+AGG - chr5_1:61308386-61308405 Msa0741600:intron 20.0%
!!! CTTTTCATAGACATTATTTT+TGG + chr5_1:61308727-61308746 None:intergenic 20.0%
!! TTAAACCAAATCTAAGAAAT+AGG + chr5_1:61309326-61309345 None:intergenic 20.0%
!!! TTAACTTCTTTCTTTGATTT+TGG - chr5_1:61309342-61309361 Msa0741600:intron 20.0%
!! AGTAAATATATTATGACTCA+AGG + chr5_1:61309690-61309709 None:intergenic 20.0%
!! CAAGAAAAAAAATAATAGAC+AGG + chr5_1:61309768-61309787 None:intergenic 20.0%
!!! TTCTATTTCTAGTTCTATGT+AGG + chr5_1:61306780-61306799 None:intergenic 25.0%
!! AATTAATATTTGTGGTAGTG+AGG - chr5_1:61306833-61306852 Msa0741600:exon 25.0%
! TTATATGAATTAGACAAAGG+CGG + chr5_1:61306861-61306880 None:intergenic 25.0%
!! GTAATAGTGAGTTTGATAAT+TGG + chr5_1:61306927-61306946 None:intergenic 25.0%
! ATATATCTTCTCTCCAAAAA+AGG - chr5_1:61307366-61307385 Msa0741600:intron 25.0%
! TACTTTAGATTCACATTGAA+AGG - chr5_1:61307697-61307716 Msa0741600:intron 25.0%
! AGGATTATATAATACTGCTT+CGG - chr5_1:61307717-61307736 Msa0741600:intron 25.0%
!! TAAGCAAATTTTGCCTTTTT+AGG - chr5_1:61307750-61307769 Msa0741600:intron 25.0%
!!! ATTTTGCTTATAATGGACAA+CGG - chr5_1:61307836-61307855 Msa0741600:intron 25.0%
! ATTGGTAAAAATGAAAGGAA+TGG + chr5_1:61307883-61307902 None:intergenic 25.0%
! TTACTATGACTAAAAGCAAA+AGG + chr5_1:61307930-61307949 None:intergenic 25.0%
! CCTTTAATATAAGCTAGATA+AGG + chr5_1:61308051-61308070 None:intergenic 25.0%
!! CCTTATCTAGCTTATATTAA+AGG - chr5_1:61308048-61308067 Msa0741600:intron 25.0%
! TTTCAGAATATGTTGATATG+AGG - chr5_1:61308324-61308343 Msa0741600:intron 25.0%
!! CACTTGAATTTTCAATGATA+TGG + chr5_1:61308643-61308662 None:intergenic 25.0%
!! CTCTTCATAGACATTAATTT+TGG + chr5_1:61309018-61309037 None:intergenic 25.0%
!! TTATACACAGTTTTCAATCT+CGG - chr5_1:61309160-61309179 Msa0741600:intron 25.0%
! CAAATCTAAGAAATAGGTTA+CGG + chr5_1:61309320-61309339 None:intergenic 25.0%
!!! TTCTTCAAGTTTTTACCTAA+GGG + chr5_1:61309489-61309508 None:intergenic 25.0%
!!! TTTCTTCAAGTTTTTACCTA+AGG + chr5_1:61309490-61309509 None:intergenic 25.0%
!!! AATTTTGAGACACAAGTTCA+AGG - chr5_1:61306749-61306768 Msa0741600:three_prime_UTR 30.0%
! GGCATTGAAAAAATTGGTTT+GGG + chr5_1:61306906-61306925 None:intergenic 30.0%
! TGGCATTGAAAAAATTGGTT+TGG + chr5_1:61306907-61306926 None:intergenic 30.0%
!! GTTATGTTTTTGTGTGAGAA+AGG + chr5_1:61307035-61307054 None:intergenic 30.0%
! TTTTGCTTAAAGAAGAAGCA+TGG + chr5_1:61307075-61307094 None:intergenic 30.0%
TTGTATGGAATTCATGCTTT+GGG + chr5_1:61307218-61307237 None:intergenic 30.0%
TTTGTATGGAATTCATGCTT+TGG + chr5_1:61307219-61307238 None:intergenic 30.0%
! CTGTGATTCAATAGTTTGTA+TGG + chr5_1:61307233-61307252 None:intergenic 30.0%
! TATGTCTGGTTTCATTGTTT+GGG - chr5_1:61307474-61307493 Msa0741600:intron 30.0%
TGTTTGGGAGTTAAAATTGA+TGG - chr5_1:61307489-61307508 Msa0741600:intron 30.0%
GAGAAAAACCAATTGTTCAA+TGG - chr5_1:61308533-61308552 Msa0741600:intron 30.0%
TTGCAAAACCATTGAACAAT+TGG + chr5_1:61308544-61308563 None:intergenic 30.0%
!! ATGGTTTTGCAAATCTCTAA+AGG - chr5_1:61308552-61308571 Msa0741600:intron 30.0%
!! GTAGTATCTTTGAAATCATG+TGG - chr5_1:61308594-61308613 Msa0741600:intron 30.0%
! ACTAGAGAGAATGAATTTTC+TGG - chr5_1:61308943-61308962 Msa0741600:intron 30.0%
AACTTTACATTACCTTCACA+TGG - chr5_1:61308972-61308991 Msa0741600:intron 30.0%
ACACATTAACATAGAGATCA+GGG + chr5_1:61309093-61309112 None:intergenic 30.0%
! TTAATGTGTCACTACTGATA+TGG - chr5_1:61309104-61309123 Msa0741600:intron 30.0%
TCTCAAAGATTCATCTGAAA+GGG - chr5_1:61309271-61309290 Msa0741600:intron 30.0%
! CGTAACCTATTTCTTAGATT+TGG - chr5_1:61309318-61309337 Msa0741600:intron 30.0%
AGTTCTTAACAACATCACAA+AGG - chr5_1:61309520-61309539 Msa0741600:CDS 30.0%
! ATCTAAATGAAGTGTCTCAA+AGG - chr5_1:61309565-61309584 Msa0741600:exon 30.0%
!!! TCAACTTTTTTCGCAACTAT+AGG - chr5_1:61309594-61309613 Msa0741600:five_prime_UTR 30.0%
ATTCCTAGTATTATAAGAGG+TGG + chr5_1:61309636-61309655 None:intergenic 30.0%
GCTATTCCTAGTATTATAAG+AGG + chr5_1:61309639-61309658 None:intergenic 30.0%
CTAGGAATAGCTATATTAAC+TGG - chr5_1:61309648-61309667 Msa0741600:five_prime_UTR 30.0%
AAAAAATAATAGACAGGCCT+TGG + chr5_1:61309762-61309781 None:intergenic 30.0%
ACTTTGTGTATGTGTGATCA+AGG + chr5_1:61306804-61306823 None:intergenic 35.0%
TGATCACACATACACAAAGT+CGG - chr5_1:61306804-61306823 Msa0741600:three_prime_UTR 35.0%
! GGGAATTGCATTTTCCATTT+TGG + chr5_1:61306886-61306905 None:intergenic 35.0%
! GTTTTTGTGTGAGAAAGGAA+GGG + chr5_1:61307030-61307049 None:intergenic 35.0%
!! TGTTTTTGTGTGAGAAAGGA+AGG + chr5_1:61307031-61307050 None:intergenic 35.0%
AAGCATGGTTGAATTTGATG+AGG + chr5_1:61307060-61307079 None:intergenic 35.0%
AAAACATGTGCTCAATCACA+AGG - chr5_1:61307091-61307110 Msa0741600:CDS 35.0%
AAACATGTGCTCAATCACAA+GGG - chr5_1:61307092-61307111 Msa0741600:CDS 35.0%
TCTGAGGATGATTCTTCAAT+TGG - chr5_1:61307130-61307149 Msa0741600:intron 35.0%
CTATTCTATAACTTGACACC+TGG - chr5_1:61307318-61307337 Msa0741600:intron 35.0%
AAGATATATTTCTCCCCTTG+TGG + chr5_1:61307355-61307374 None:intergenic 35.0%
! GTATGTCTGGTTTCATTGTT+TGG - chr5_1:61307473-61307492 Msa0741600:intron 35.0%
! TGGGAGTTAAAATTGATGGT+AGG - chr5_1:61307493-61307512 Msa0741600:intron 35.0%
! GGGAGTTAAAATTGATGGTA+GGG - chr5_1:61307494-61307513 Msa0741600:intron 35.0%
!! TTATAATGGACAACGGAGTA+AGG - chr5_1:61307843-61307862 Msa0741600:intron 35.0%
AGTCGAAGAAAATAAAACGG+AGG - chr5_1:61308201-61308220 Msa0741600:intron 35.0%
!! GTTCTAGTTCATGTCACTAT+AGG - chr5_1:61308346-61308365 Msa0741600:intron 35.0%
TTAGGTTCAACTGTTTGTTC+TGG + chr5_1:61308857-61308876 None:intergenic 35.0%
AGTTGAACCTAACACACATT+TGG - chr5_1:61308865-61308884 Msa0741600:intron 35.0%
GTTGAACCTAACACACATTT+GGG - chr5_1:61308866-61308885 Msa0741600:intron 35.0%
GTATCATACCATGTTGAGTA+TGG + chr5_1:61308918-61308937 None:intergenic 35.0%
CACATAAAAGTTCCATGTGA+AGG + chr5_1:61308987-61309006 None:intergenic 35.0%
TAACATAGAGATCAGGGTAT+GGG + chr5_1:61309087-61309106 None:intergenic 35.0%
TTAACATAGAGATCAGGGTA+TGG + chr5_1:61309088-61309107 None:intergenic 35.0%
GACACATTAACATAGAGATC+AGG + chr5_1:61309094-61309113 None:intergenic 35.0%
TGTCACTACTGATATGGATT+TGG - chr5_1:61309110-61309129 Msa0741600:intron 35.0%
GACATACATGCATATCAGTA+GGG + chr5_1:61309253-61309272 None:intergenic 35.0%
AGACATACATGCATATCAGT+AGG + chr5_1:61309254-61309273 None:intergenic 35.0%
GTCTCAAAGATTCATCTGAA+AGG - chr5_1:61309270-61309289 Msa0741600:intron 35.0%
!! AACAACTATGAGAGCATTTC+TGG - chr5_1:61309367-61309386 Msa0741600:intron 35.0%
CTTCTAGGTTATGAAAGTGA+TGG - chr5_1:61309390-61309409 Msa0741600:CDS 35.0%
! TCAAGTTTTTACCTAAGGGA+AGG + chr5_1:61309485-61309504 None:intergenic 35.0%
CTTCCACCTCTTATAATACT+AGG - chr5_1:61309630-61309649 Msa0741600:five_prime_UTR 35.0%
AATTACCCCATTTACTACCA+AGG - chr5_1:61309742-61309761 Msa0741600:five_prime_UTR 35.0%
TTGAGACACAAGTTCAAGGT+TGG - chr5_1:61306753-61306772 Msa0741600:three_prime_UTR 40.0%
TCTCATGAAGCAAAGTTCCA+TGG - chr5_1:61306964-61306983 Msa0741600:CDS 40.0%
AGAAGTGGTGGTTAGATTGA+TGG + chr5_1:61306993-61307012 None:intergenic 40.0%
AGAATCATCCTCAGAAACTC+CGG + chr5_1:61307125-61307144 None:intergenic 40.0%
AAAAGTGGGATAGGAACTGT+TGG + chr5_1:61307164-61307183 None:intergenic 40.0%
! TTGTGGGCTAATTGTATGTC+TGG - chr5_1:61307460-61307479 Msa0741600:intron 40.0%
!!! ACTAGTTTTCTCTTTGGTCC+TGG - chr5_1:61307960-61307979 Msa0741600:intron 40.0%
! GTTCAACTGTTTGTTCTGGA+GGG + chr5_1:61308853-61308872 None:intergenic 40.0%
! TAACCGCATACTTTTCCCAT+TGG + chr5_1:61309143-61309162 None:intergenic 40.0%
! GCTCTTAATTTGATATCGCG+TGG - chr5_1:61309182-61309201 Msa0741600:intron 40.0%
AGTGGTGGTTAGATTGATGG+TGG + chr5_1:61306990-61307009 None:intergenic 45.0%
TGGATGAAGAGAAGAAGTGG+TGG + chr5_1:61307005-61307024 None:intergenic 45.0%
GCTTGGATGAAGAGAAGAAG+TGG + chr5_1:61307008-61307027 None:intergenic 45.0%
CAATCACAAGGGACTGAAAC+CGG - chr5_1:61307103-61307122 Msa0741600:CDS 45.0%
TGGCTCATTTCTCTCCACAA+GGG - chr5_1:61307338-61307357 Msa0741600:intron 45.0%
GAGTGACTAAAGAAACAGCC+AGG + chr5_1:61307981-61308000 None:intergenic 45.0%
ATCTTCTTCTCGTGCACAAC+TGG - chr5_1:61308415-61308434 Msa0741600:intron 45.0%
! TCGTGCACAACTGGATCTTT+TGG - chr5_1:61308424-61308443 Msa0741600:intron 45.0%
TCTACAAGCTCATCAGTCAC+TGG - chr5_1:61308458-61308477 Msa0741600:intron 45.0%
TGAAATCATGTGGTGCGAAG+TGG - chr5_1:61308604-61308623 Msa0741600:intron 45.0%
CAGTTTAGAGATCAGGGCAT+GGG + chr5_1:61308796-61308815 None:intergenic 45.0%
ACAGTTTAGAGATCAGGGCA+TGG + chr5_1:61308797-61308816 None:intergenic 45.0%
GCGGTACAGTTTAGAGATCA+GGG + chr5_1:61308802-61308821 None:intergenic 45.0%
GGTTCAACTGTTTGTTCTGG+AGG + chr5_1:61308854-61308873 None:intergenic 45.0%
TGGTTCGTAGGCACAAAAGA+GGG + chr5_1:61308898-61308917 None:intergenic 45.0%
ATGGTTCGTAGGCACAAAAG+AGG + chr5_1:61308899-61308918 None:intergenic 45.0%
CCATGTTGAGTATGGTTCGT+AGG + chr5_1:61308910-61308929 None:intergenic 45.0%
CCTACGAACCATACTCAACA+TGG - chr5_1:61308907-61308926 Msa0741600:intron 45.0%
GATCAGGGTATGGGAGAAAT+AGG + chr5_1:61309078-61309097 None:intergenic 45.0%
TGGATTTGGATTCCGTCCAA+TGG - chr5_1:61309124-61309143 Msa0741600:intron 45.0%
GGATTTGGATTCCGTCCAAT+GGG - chr5_1:61309125-61309144 Msa0741600:intron 45.0%
! CGCATACTTTTCCCATTGGA+CGG + chr5_1:61309139-61309158 None:intergenic 45.0%
! CGTCCAATGGGAAAAGTATG+CGG - chr5_1:61309137-61309156 Msa0741600:intron 45.0%
!! TGAGAGCATTTCTGGCTTCT+AGG - chr5_1:61309375-61309394 Msa0741600:intron 45.0%
GATGATTTCAGCCTTCCCTT+AGG - chr5_1:61309471-61309490 Msa0741600:CDS 45.0%
! ACAGGCCTTGGTAGTAAATG+GGG + chr5_1:61309750-61309769 None:intergenic 45.0%
! GACAGGCCTTGGTAGTAAAT+GGG + chr5_1:61309751-61309770 None:intergenic 45.0%
! AGACAGGCCTTGGTAGTAAA+TGG + chr5_1:61309752-61309771 None:intergenic 45.0%
!! GGTTAGATTGATGGTGGCCA+TGG + chr5_1:61306984-61307003 None:intergenic 50.0%
TGTGTGAGAAAGGAAGGGCT+TGG + chr5_1:61307025-61307044 None:intergenic 50.0%
GACTGAAACCGGAGTTTCTG+AGG - chr5_1:61307114-61307133 Msa0741600:CDS 50.0%
CTTGTGGAGAGAAATGAGCC+AGG + chr5_1:61307339-61307358 None:intergenic 50.0%
CTGGCTCATTTCTCTCCACA+AGG - chr5_1:61307337-61307356 Msa0741600:intron 50.0%
GGCTCATTTCTCTCCACAAG+GGG - chr5_1:61307339-61307358 Msa0741600:intron 50.0%
GATCAGGGCATGGGAGAAAT+AGG + chr5_1:61308787-61308806 None:intergenic 50.0%
CGCGGTACAGTTTAGAGATC+AGG + chr5_1:61308803-61308822 None:intergenic 50.0%
GATCTCTAAACTGTACCGCG+CGG - chr5_1:61308803-61308822 Msa0741600:intron 50.0%
ATCTCTAAACTGTACCGCGC+GGG - chr5_1:61308804-61308823 Msa0741600:intron 50.0%
!! TTTGTTCTGGAGGGCAACTG+GGG + chr5_1:61308844-61308863 None:intergenic 50.0%
!! GTTTGTTCTGGAGGGCAACT+GGG + chr5_1:61308845-61308864 None:intergenic 50.0%
!! TGTTTGTTCTGGAGGGCAAC+TGG + chr5_1:61308846-61308865 None:intergenic 50.0%
GCAAGGCCCAAATGTGTGTT+AGG + chr5_1:61308875-61308894 None:intergenic 50.0%
GGTTCGTAGGCACAAAAGAG+GGG + chr5_1:61308897-61308916 None:intergenic 50.0%
TTGCGCAGTTGGTTGGAGAA+AGG - chr5_1:61309445-61309464 Msa0741600:CDS 50.0%
TGCGCAGTTGGTTGGAGAAA+GGG - chr5_1:61309446-61309465 Msa0741600:CDS 50.0%
GTAGGCACAAAAGAGGGGCA+AGG + chr5_1:61308892-61308911 None:intergenic 55.0%
GAACAGCTTGCGCAGTTGGT+TGG - chr5_1:61309438-61309457 Msa0741600:CDS 55.0%
TCGCGAACAGCTTGCGCAGT+TGG - chr5_1:61309434-61309453 Msa0741600:CDS 60.0%
TGCAGGTCTGATAGCCCGCG+CGG + chr5_1:61308821-61308840 None:intergenic 65.0%
CTGGAGGGCAACTGGGGTGC+AGG + chr5_1:61308838-61308857 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61306747 61309792 61306747 ID=Msa0741600;Name=Msa0741600
chr5_1 mRNA 61306747 61309792 61306747 ID=Msa0741600-mRNA-1;Parent=Msa0741600;Name=Msa0741600-mRNA-1;_AED=0.26;_eAED=0.26;_QI=221|1|1|1|1|1|3|100|183
chr5_1 exon 61306747 61307142 61306747 ID=Msa0741600-mRNA-1:exon:17761;Parent=Msa0741600-mRNA-1
chr5_1 exon 61308060 61308131 61308060 ID=Msa0741600-mRNA-1:exon:17760;Parent=Msa0741600-mRNA-1
chr5_1 exon 61309388 61309792 61309388 ID=Msa0741600-mRNA-1:exon:17759;Parent=Msa0741600-mRNA-1
chr5_1 five_prime_UTR 61309572 61309792 61309572 ID=Msa0741600-mRNA-1:five_prime_utr;Parent=Msa0741600-mRNA-1
chr5_1 CDS 61309388 61309571 61309388 ID=Msa0741600-mRNA-1:cds;Parent=Msa0741600-mRNA-1
chr5_1 CDS 61308060 61308131 61308060 ID=Msa0741600-mRNA-1:cds;Parent=Msa0741600-mRNA-1
chr5_1 CDS 61306847 61307142 61306847 ID=Msa0741600-mRNA-1:cds;Parent=Msa0741600-mRNA-1
chr5_1 three_prime_UTR 61306747 61306846 61306747 ID=Msa0741600-mRNA-1:three_prime_utr;Parent=Msa0741600-mRNA-1
Gene Sequence

>Msa0741600

ATGAAGCAAAGTTCCATGGCCACCATCAATCTAACCACCACTTCTTCTCTTCATCCAAGCCCTTCCTTTCTCACACAAAAACATAACAACCTCATCAAATTCAACCATGCTTCTTCTTTAAGCAAAACATGTGCTCAATCACAAGGGACTGAAACCGGAGTTTCTGAGGATGATTCTTCAATTGGATCTTTATCTTCTTCTCGTGCACAACTGGATCTTTTGGAGCAATTTACATCTACAAGCTCATCAGTCACTGGTTATGAAAGTGATGGCAGCTCTCAGAGACTTACAATTCGCGAACAGCTTGCGCAGTTGGTTGGAGAAAGGGATGATGATTTCAGCCTTCCCTTAGGTAAAAACTTGAAGAAAGTGAGTGCAAAGTTCTTAACAACATCACAAAGGAGAAATATCAAGAGACAGAGTTATCTAAATGAAGTGTCTCAAAGGAATGATTCAACTTTTTTCGCAACTATAGGAGCATTTGTACTTCTTCCACCTCTTATAATACTAGGAATAGCTATATTAACTGGTTATGTACAGCTTTTACCTTGA

Protein sequence

>Msa0741600

MKQSSMATINLTTTSSLHPSPSFLTQKHNNLIKFNHASSLSKTCAQSQGTETGVSEDDSSIGSLSSSRAQLDLLEQFTSTSSSVTGYESDGSSQRLTIREQLAQLVGERDDDFSLPLGKNLKKVSAKFLTTSQRRNIKRQSYLNEVSQRNDSTFFATIGAFVLLPPLIILGIAILTGYVQLLP*