AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414560 MtrunA17_Chr5g0442981 93.443 183 7 2 1 183 1 178 6.99e-112 316
Msa1414560 MtrunA17_Chr7g0228271 69.565 46 14 0 86 131 15 60 6.35e-17 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414560 AT2G42975.1 80.342 117 19 2 68 183 74 187 4.18e-60 186

Find 43 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAGGCCTTGGTAGTAAA+TGG 0.234094 tig0024137:+7112 None:intergenic
ATCTTCTTCTCGTGCACAAC+TGG 0.315548 tig0024137:-8445 Msa1414560:CDS
GTAATAGTGAGTTTGATAAT+TGG 0.323795 tig0024137:+9936 None:intergenic
TCGTGCACAACTGGATCTTT+TGG 0.328038 tig0024137:-8436 Msa1414560:CDS
TAATTCATATAAAACCAAAA+TGG 0.363379 tig0024137:-9991 Msa1414560:five_prime_UTR
TCTGAGGATGATTCTTCAAT+TGG 0.371085 tig0024137:-9730 Msa1414560:intron
CTTCCACCTCTTATAATACT+AGG 0.378568 tig0024137:-7231 Msa1414560:CDS
CTAGGAATAGCTATATTAAC+TGG 0.405799 tig0024137:-7213 Msa1414560:CDS
GACAGGCCTTGGTAGTAAAT+GGG 0.410792 tig0024137:+7113 None:intergenic
CAATCACAAGGGACTGAAAC+CGG 0.442863 tig0024137:-9757 Msa1414560:CDS
GGTAATTAAATTAATATTTG+TGG 0.447236 tig0024137:-10035 Msa1414560:five_prime_UTR
TCGCGAACAGCTTGCGCAGT+TGG 0.451182 tig0024137:-7427 Msa1414560:CDS
TTGCGCAGTTGGTTGGAGAA+AGG 0.457947 tig0024137:-7416 Msa1414560:CDS
TGCGCAGTTGGTTGGAGAAA+GGG 0.462113 tig0024137:-7415 Msa1414560:CDS
TTCTATTTCTAGTTCTATGT+AGG 0.483900 tig0024137:+10083 None:intergenic
AGAAGTGGTGGTTAGATTGA+TGG 0.485237 tig0024137:+9870 None:intergenic
GCTATTCCTAGTATTATAAG+AGG 0.488609 tig0024137:+7225 None:intergenic
GATGATTTCAGCCTTCCCTT+AGG 0.492206 tig0024137:-7390 Msa1414560:CDS
TGTGTGAGAAAGGAAGGGCT+TGG 0.519357 tig0024137:+9838 None:intergenic
AATTAATATTTGTGGTAGTG+AGG 0.534294 tig0024137:-10027 Msa1414560:five_prime_UTR
GGTTAGATTGATGGTGGCCA+TGG 0.534595 tig0024137:+9879 None:intergenic
GAACAGCTTGCGCAGTTGGT+TGG 0.536982 tig0024137:-7423 Msa1414560:CDS
TTGAGACACAAGTTCAAGGT+TGG 0.538320 tig0024137:-10107 Msa1414560:five_prime_UTR
AGTAAATATATTATGACTCA+AGG 0.542225 tig0024137:+7174 None:intergenic
GCTTGGATGAAGAGAAGAAG+TGG 0.571593 tig0024137:+9855 None:intergenic
AATTACCCCATTTACTACCA+AGG 0.574059 tig0024137:-7119 Msa1414560:three_prime_UTR
ATCTAAATGAAGTGTCTCAA+AGG 0.575590 tig0024137:-7296 Msa1414560:CDS
ACTTTGTGTATGTGTGATCA+AGG 0.576668 tig0024137:+10059 None:intergenic
AGAATCATCCTCAGAAACTC+CGG 0.580828 tig0024137:+9738 None:intergenic
GACTGAAACCGGAGTTTCTG+AGG 0.581814 tig0024137:-9746 Msa1414560:CDS
ATTCCTAGTATTATAAGAGG+TGG 0.585295 tig0024137:+7228 None:intergenic
TCTACAAGCTCATCAGTCAC+TGG 0.588562 tig0024137:-8402 Msa1414560:intron
AAAACATGTGCTCAATCACA+AGG 0.605787 tig0024137:-9769 Msa1414560:CDS
CTTCTAGGTTATGAAAGTGA+TGG 0.609052 tig0024137:-7471 Msa1414560:intron
TCTCATGAAGCAAAGTTCCA+TGG 0.612827 tig0024137:-9896 Msa1414560:exon
AAGCATGGTTGAATTTGATG+AGG 0.629627 tig0024137:+9803 None:intergenic
ACAGGCCTTGGTAGTAAATG+GGG 0.636091 tig0024137:+7114 None:intergenic
TTATATGAATTAGACAAAGG+CGG 0.649549 tig0024137:+10002 None:intergenic
TGGATGAAGAGAAGAAGTGG+TGG 0.661347 tig0024137:+9858 None:intergenic
TGATCACACATACACAAAGT+CGG 0.661350 tig0024137:-10056 Msa1414560:five_prime_UTR
AAACATGTGCTCAATCACAA+GGG 0.709012 tig0024137:-9768 Msa1414560:CDS
AGTTCTTAACAACATCACAA+AGG 0.710069 tig0024137:-7341 Msa1414560:CDS
AGTGGTGGTTAGATTGATGG+TGG 0.725189 tig0024137:+9873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATATATTAATATAA+AGG + tig0024137:7981-8000 None:intergenic 0.0%
!! TTCAATTTAATAAAAAAAGT+GGG + tig0024137:7522-7541 None:intergenic 10.0%
!! ATTCAATTTAATAAAAAAAG+TGG + tig0024137:7523-7542 None:intergenic 10.0%
!! AATTTATTTAATATCGAAAT+TGG - tig0024137:8347-8366 Msa1414560:intron 10.0%
!! GGTAATTAAATTAATATTTG+TGG - tig0024137:7169-7188 Msa1414560:three_prime_UTR 15.0%
!! TAATTCATATAAAACCAAAA+TGG - tig0024137:7213-7232 Msa1414560:CDS 15.0%
!! AATAATTTCCAGTAAATTTA+TGG - tig0024137:7769-7788 Msa1414560:intron 15.0%
!! ATAATTTCCAGTAAATTTAT+GGG - tig0024137:7770-7789 Msa1414560:intron 15.0%
!! TTAATTAAATGTACCTAAAA+AGG + tig0024137:8110-8129 None:intergenic 15.0%
!! CATTAAATTAATGATGTATA+CGG + tig0024137:8145-8164 None:intergenic 15.0%
!!! AAATCAAATTTTGCTTATAA+TGG - tig0024137:8173-8192 Msa1414560:intron 15.0%
!!! CCTTTCAAAAAAATTATTTT+TGG + tig0024137:9042-9061 None:intergenic 15.0%
!!! CCAAAAATAATTTTTTTGAA+AGG - tig0024137:9039-9058 Msa1414560:intron 15.0%
!!! GTTTTATATGAATTAGACAA+AGG + tig0024137:7208-7227 None:intergenic 20.0%
!!! ATAATTGGCATTGAAAAAAT+TGG + tig0024137:7256-7275 None:intergenic 20.0%
!! TTTAATAAAAAAAGTGGGAT+AGG + tig0024137:7517-7536 None:intergenic 20.0%
!! ATTGAATTCAAACATTAGTA+TGG - tig0024137:7536-7555 Msa1414560:intron 20.0%
!!! GATATATTTTTCTCCTTTTT+TGG + tig0024137:7726-7745 None:intergenic 20.0%
!! TAAATTTCCCATAAATTTAC+TGG + tig0024137:7780-7799 None:intergenic 20.0%
!! TATGGGAAATTTATAATTTG+TGG - tig0024137:7787-7806 Msa1414560:intron 20.0%
!!! ATGGGAAATTTATAATTTGT+GGG - tig0024137:7788-7807 Msa1414560:intron 20.0%
!! CAAAAATTGGTAAAAATGAA+AGG + tig0024137:8232-8251 None:intergenic 20.0%
!!! ACCAATTTTTGTTTTTAGTT+TGG - tig0024137:8241-8260 Msa1414560:intron 20.0%
!! ACCAAACTAAAAACAAAAAT+TGG + tig0024137:8245-8264 None:intergenic 20.0%
!!! AAATATACTAGTTTTCTCTT+TGG - tig0024137:8298-8317 Msa1414560:intron 20.0%
!! GGACTAAAATAAATATTAGA+TGG + tig0024137:8374-8393 None:intergenic 20.0%
!! CCAACATTATTCTTATTATT+TGG + tig0024137:8488-8507 None:intergenic 20.0%
!! CCAAATAATAAGAATAATGT+TGG - tig0024137:8485-8504 Msa1414560:intron 20.0%
!! TTTAATGCATTCTATTTGAT+TGG - tig0024137:8517-8536 Msa1414560:intron 20.0%
!! AAAAGTCGAAGAAAATAAAA+CGG - tig0024137:8542-8561 Msa1414560:intron 20.0%
!!! TTTTGATGACTTTTATTGTT+AGG - tig0024137:8730-8749 Msa1414560:intron 20.0%
!!! CTTTTCATAGACATTATTTT+TGG + tig0024137:9071-9090 None:intergenic 20.0%
!! TTAAACCAAATCTAAGAAAT+AGG + tig0024137:9669-9688 None:intergenic 20.0%
!!! TTAACTTCTTTCTTTGATTT+TGG - tig0024137:9685-9704 Msa1414560:intron 20.0%
!! AGTAAATATATTATGACTCA+AGG + tig0024137:10033-10052 None:intergenic 20.0%
!! CAAGAAAAAAAATAATAGAC+AGG + tig0024137:10111-10130 None:intergenic 20.0%
!!! TTCTATTTCTAGTTCTATGT+AGG + tig0024137:7124-7143 None:intergenic 25.0%
!! AATTAATATTTGTGGTAGTG+AGG - tig0024137:7177-7196 Msa1414560:exon 25.0%
! TTATATGAATTAGACAAAGG+CGG + tig0024137:7205-7224 None:intergenic 25.0%
!! GTAATAGTGAGTTTGATAAT+TGG + tig0024137:7271-7290 None:intergenic 25.0%
! ATATATCTTCTCTCCAAAAA+AGG - tig0024137:7710-7729 Msa1414560:intron 25.0%
! TACTTTAGATTCACATTGAA+AGG - tig0024137:8041-8060 Msa1414560:intron 25.0%
! AGGATTATATAATACTGCTT+CGG - tig0024137:8061-8080 Msa1414560:intron 25.0%
!! TAAGCAAATTTTGCCTTTTT+AGG - tig0024137:8094-8113 Msa1414560:intron 25.0%
!!! ATTTTGCTTATAATGGACAA+CGG - tig0024137:8180-8199 Msa1414560:intron 25.0%
! ATTGGTAAAAATGAAAGGAA+TGG + tig0024137:8227-8246 None:intergenic 25.0%
! TTACTATGACTAAAAGCAAA+AGG + tig0024137:8274-8293 None:intergenic 25.0%
! CCTTTAATATAAGCTAGATA+AGG + tig0024137:8395-8414 None:intergenic 25.0%
!! CCTTATCTAGCTTATATTAA+AGG - tig0024137:8392-8411 Msa1414560:intron 25.0%
! TTTCAGAATATGTTGATATG+AGG - tig0024137:8668-8687 Msa1414560:intron 25.0%
!! CACTTGAATTTTCAATGATA+TGG + tig0024137:8987-9006 None:intergenic 25.0%
!! CTCTTCATAGACATTAATTT+TGG + tig0024137:9361-9380 None:intergenic 25.0%
!! TTATACACAGTTTTCAATCT+CGG - tig0024137:9503-9522 Msa1414560:intron 25.0%
! CAAATCTAAGAAATAGGTTA+CGG + tig0024137:9663-9682 None:intergenic 25.0%
!!! TTCTTCAAGTTTTTACCTAA+GGG + tig0024137:9832-9851 None:intergenic 25.0%
!!! TTTCTTCAAGTTTTTACCTA+AGG + tig0024137:9833-9852 None:intergenic 25.0%
!!! AATTTTGAGACACAAGTTCA+AGG - tig0024137:7093-7112 Msa1414560:three_prime_UTR 30.0%
! GGCATTGAAAAAATTGGTTT+GGG + tig0024137:7250-7269 None:intergenic 30.0%
! TGGCATTGAAAAAATTGGTT+TGG + tig0024137:7251-7270 None:intergenic 30.0%
!! GTTATGTTTTTGTGTGAGAA+AGG + tig0024137:7379-7398 None:intergenic 30.0%
! TTTTGCTTAAAGAAGAAGCA+TGG + tig0024137:7419-7438 None:intergenic 30.0%
TTGTATGGAATTCATGCTTT+GGG + tig0024137:7562-7581 None:intergenic 30.0%
TTTGTATGGAATTCATGCTT+TGG + tig0024137:7563-7582 None:intergenic 30.0%
! CTGTGATTCAATAGTTTGTA+TGG + tig0024137:7577-7596 None:intergenic 30.0%
! TATGTCTGGTTTCATTGTTT+GGG - tig0024137:7818-7837 Msa1414560:intron 30.0%
TGTTTGGGAGTTAAAATTGA+TGG - tig0024137:7833-7852 Msa1414560:intron 30.0%
GAGAAAAACCAATTGTTCAA+TGG - tig0024137:8877-8896 Msa1414560:intron 30.0%
TTGCAAAACCATTGAACAAT+TGG + tig0024137:8888-8907 None:intergenic 30.0%
!! ATGGTTTTGCAAATCTCTAA+AGG - tig0024137:8896-8915 Msa1414560:intron 30.0%
!! GTAGTATCTTTGAAATCATG+TGG - tig0024137:8938-8957 Msa1414560:intron 30.0%
! ACTAGAGAGAATGAATTTTC+TGG - tig0024137:9286-9305 Msa1414560:intron 30.0%
AACTTTACATTACCTTCACA+TGG - tig0024137:9315-9334 Msa1414560:intron 30.0%
ACACATTAACATAGAGATCA+GGG + tig0024137:9436-9455 None:intergenic 30.0%
! TTAATGTGTCACTACTGATA+TGG - tig0024137:9447-9466 Msa1414560:intron 30.0%
TCTCAAAGATTCATCTGAAA+GGG - tig0024137:9614-9633 Msa1414560:intron 30.0%
! CGTAACCTATTTCTTAGATT+TGG - tig0024137:9661-9680 Msa1414560:intron 30.0%
AGTTCTTAACAACATCACAA+AGG - tig0024137:9863-9882 Msa1414560:CDS 30.0%
! ATCTAAATGAAGTGTCTCAA+AGG - tig0024137:9908-9927 Msa1414560:exon 30.0%
!!! TCAACTTTTTTCGCAACTAT+AGG - tig0024137:9937-9956 Msa1414560:five_prime_UTR 30.0%
ATTCCTAGTATTATAAGAGG+TGG + tig0024137:9979-9998 None:intergenic 30.0%
GCTATTCCTAGTATTATAAG+AGG + tig0024137:9982-10001 None:intergenic 30.0%
CTAGGAATAGCTATATTAAC+TGG - tig0024137:9991-10010 Msa1414560:five_prime_UTR 30.0%
AAAAAATAATAGACAGGCCT+TGG + tig0024137:10105-10124 None:intergenic 30.0%
ACTTTGTGTATGTGTGATCA+AGG + tig0024137:7148-7167 None:intergenic 35.0%
TGATCACACATACACAAAGT+CGG - tig0024137:7148-7167 Msa1414560:three_prime_UTR 35.0%
! GGGAATTGCATTTTCCATTT+TGG + tig0024137:7230-7249 None:intergenic 35.0%
! GTTTTTGTGTGAGAAAGGAA+GGG + tig0024137:7374-7393 None:intergenic 35.0%
!! TGTTTTTGTGTGAGAAAGGA+AGG + tig0024137:7375-7394 None:intergenic 35.0%
AAGCATGGTTGAATTTGATG+AGG + tig0024137:7404-7423 None:intergenic 35.0%
AAAACATGTGCTCAATCACA+AGG - tig0024137:7435-7454 Msa1414560:CDS 35.0%
AAACATGTGCTCAATCACAA+GGG - tig0024137:7436-7455 Msa1414560:CDS 35.0%
TCTGAGGATGATTCTTCAAT+TGG - tig0024137:7474-7493 Msa1414560:intron 35.0%
CTATTCTATAACTTGACACC+TGG - tig0024137:7662-7681 Msa1414560:intron 35.0%
AAGATATATTTCTCCCCTTG+TGG + tig0024137:7699-7718 None:intergenic 35.0%
! GTATGTCTGGTTTCATTGTT+TGG - tig0024137:7817-7836 Msa1414560:intron 35.0%
! TGGGAGTTAAAATTGATGGT+AGG - tig0024137:7837-7856 Msa1414560:intron 35.0%
! GGGAGTTAAAATTGATGGTA+GGG - tig0024137:7838-7857 Msa1414560:intron 35.0%
!! TTATAATGGACAACGGAGTA+AGG - tig0024137:8187-8206 Msa1414560:intron 35.0%
AGTCGAAGAAAATAAAACGG+AGG - tig0024137:8545-8564 Msa1414560:intron 35.0%
!! GTTCTAGTTCATGTCACTAT+AGG - tig0024137:8690-8709 Msa1414560:intron 35.0%
TTAGGTTCAACTGTTTGTTC+TGG + tig0024137:9201-9220 None:intergenic 35.0%
AGTTGAACCTAACACACATT+TGG - tig0024137:9209-9228 Msa1414560:intron 35.0%
GTTGAACCTAACACACATTT+GGG - tig0024137:9210-9229 Msa1414560:intron 35.0%
GTATCATACCATGTTGAGTA+TGG + tig0024137:9261-9280 None:intergenic 35.0%
CACATAAAAGTTCCATGTGA+AGG + tig0024137:9330-9349 None:intergenic 35.0%
TAACATAGAGATCAGGGTAT+GGG + tig0024137:9430-9449 None:intergenic 35.0%
TTAACATAGAGATCAGGGTA+TGG + tig0024137:9431-9450 None:intergenic 35.0%
GACACATTAACATAGAGATC+AGG + tig0024137:9437-9456 None:intergenic 35.0%
TGTCACTACTGATATGGATT+TGG - tig0024137:9453-9472 Msa1414560:intron 35.0%
GACATACATGCATATCAGTA+GGG + tig0024137:9596-9615 None:intergenic 35.0%
AGACATACATGCATATCAGT+AGG + tig0024137:9597-9616 None:intergenic 35.0%
GTCTCAAAGATTCATCTGAA+AGG - tig0024137:9613-9632 Msa1414560:intron 35.0%
!! AACAACTATGAGAGCATTTC+TGG - tig0024137:9710-9729 Msa1414560:intron 35.0%
CTTCTAGGTTATGAAAGTGA+TGG - tig0024137:9733-9752 Msa1414560:CDS 35.0%
! TCAAGTTTTTACCTAAGGGA+AGG + tig0024137:9828-9847 None:intergenic 35.0%
CTTCCACCTCTTATAATACT+AGG - tig0024137:9973-9992 Msa1414560:five_prime_UTR 35.0%
AATTACCCCATTTACTACCA+AGG - tig0024137:10085-10104 Msa1414560:five_prime_UTR 35.0%
TTGAGACACAAGTTCAAGGT+TGG - tig0024137:7097-7116 Msa1414560:three_prime_UTR 40.0%
TCTCATGAAGCAAAGTTCCA+TGG - tig0024137:7308-7327 Msa1414560:CDS 40.0%
AGAAGTGGTGGTTAGATTGA+TGG + tig0024137:7337-7356 None:intergenic 40.0%
AGAATCATCCTCAGAAACTC+CGG + tig0024137:7469-7488 None:intergenic 40.0%
AAAAGTGGGATAGGAACTGT+TGG + tig0024137:7508-7527 None:intergenic 40.0%
! TTGTGGGCTAATTGTATGTC+TGG - tig0024137:7804-7823 Msa1414560:intron 40.0%
!!! ACTAGTTTTCTCTTTGGTCC+TGG - tig0024137:8304-8323 Msa1414560:intron 40.0%
! GTTCAACTGTTTGTTCTGGA+GGG + tig0024137:9197-9216 None:intergenic 40.0%
! TAACCGCATACTTTTCCCAT+TGG + tig0024137:9486-9505 None:intergenic 40.0%
! GCTCTTAATTTGATATCGCG+TGG - tig0024137:9525-9544 Msa1414560:intron 40.0%
AGTGGTGGTTAGATTGATGG+TGG + tig0024137:7334-7353 None:intergenic 45.0%
TGGATGAAGAGAAGAAGTGG+TGG + tig0024137:7349-7368 None:intergenic 45.0%
GCTTGGATGAAGAGAAGAAG+TGG + tig0024137:7352-7371 None:intergenic 45.0%
CAATCACAAGGGACTGAAAC+CGG - tig0024137:7447-7466 Msa1414560:CDS 45.0%
TGGCTCATTTCTCTCCACAA+GGG - tig0024137:7682-7701 Msa1414560:intron 45.0%
GAGTGACTAAAGAAACAGCC+AGG + tig0024137:8325-8344 None:intergenic 45.0%
ATCTTCTTCTCGTGCACAAC+TGG - tig0024137:8759-8778 Msa1414560:intron 45.0%
! TCGTGCACAACTGGATCTTT+TGG - tig0024137:8768-8787 Msa1414560:intron 45.0%
TCTACAAGCTCATCAGTCAC+TGG - tig0024137:8802-8821 Msa1414560:intron 45.0%
TGAAATCATGTGGTGCGAAG+TGG - tig0024137:8948-8967 Msa1414560:intron 45.0%
CAGTTTAGAGATCAGGGCAT+GGG + tig0024137:9140-9159 None:intergenic 45.0%
ACAGTTTAGAGATCAGGGCA+TGG + tig0024137:9141-9160 None:intergenic 45.0%
GCGGTACAGTTTAGAGATCA+GGG + tig0024137:9146-9165 None:intergenic 45.0%
GGTTCAACTGTTTGTTCTGG+AGG + tig0024137:9198-9217 None:intergenic 45.0%
ATGGTTCGTAGGCACAAAGA+GGG + tig0024137:9242-9261 None:intergenic 45.0%
TATGGTTCGTAGGCACAAAG+AGG + tig0024137:9243-9262 None:intergenic 45.0%
CCATGTTGAGTATGGTTCGT+AGG + tig0024137:9253-9272 None:intergenic 45.0%
CCTACGAACCATACTCAACA+TGG - tig0024137:9250-9269 Msa1414560:intron 45.0%
GATCAGGGTATGGGAGAAAT+AGG + tig0024137:9421-9440 None:intergenic 45.0%
TGGATTTGGATTCCGTCCAA+TGG - tig0024137:9467-9486 Msa1414560:intron 45.0%
GGATTTGGATTCCGTCCAAT+GGG - tig0024137:9468-9487 Msa1414560:intron 45.0%
! CGCATACTTTTCCCATTGGA+CGG + tig0024137:9482-9501 None:intergenic 45.0%
! CGTCCAATGGGAAAAGTATG+CGG - tig0024137:9480-9499 Msa1414560:intron 45.0%
!! TGAGAGCATTTCTGGCTTCT+AGG - tig0024137:9718-9737 Msa1414560:intron 45.0%
GATGATTTCAGCCTTCCCTT+AGG - tig0024137:9814-9833 Msa1414560:CDS 45.0%
! ACAGGCCTTGGTAGTAAATG+GGG + tig0024137:10093-10112 None:intergenic 45.0%
! GACAGGCCTTGGTAGTAAAT+GGG + tig0024137:10094-10113 None:intergenic 45.0%
! AGACAGGCCTTGGTAGTAAA+TGG + tig0024137:10095-10114 None:intergenic 45.0%
!! GGTTAGATTGATGGTGGCCA+TGG + tig0024137:7328-7347 None:intergenic 50.0%
TGTGTGAGAAAGGAAGGGCT+TGG + tig0024137:7369-7388 None:intergenic 50.0%
GACTGAAACCGGAGTTTCTG+AGG - tig0024137:7458-7477 Msa1414560:CDS 50.0%
CTTGTGGAGAGAAATGAGCC+AGG + tig0024137:7683-7702 None:intergenic 50.0%
CTGGCTCATTTCTCTCCACA+AGG - tig0024137:7681-7700 Msa1414560:intron 50.0%
GGCTCATTTCTCTCCACAAG+GGG - tig0024137:7683-7702 Msa1414560:intron 50.0%
GATCAGGGCATGGGAGAAAT+AGG + tig0024137:9131-9150 None:intergenic 50.0%
CGCGGTACAGTTTAGAGATC+AGG + tig0024137:9147-9166 None:intergenic 50.0%
GATCTCTAAACTGTACCGCG+CGG - tig0024137:9147-9166 Msa1414560:intron 50.0%
ATCTCTAAACTGTACCGCGC+GGG - tig0024137:9148-9167 Msa1414560:intron 50.0%
!! TTTGTTCTGGAGGGCAACTG+GGG + tig0024137:9188-9207 None:intergenic 50.0%
!! GTTTGTTCTGGAGGGCAACT+GGG + tig0024137:9189-9208 None:intergenic 50.0%
!! TGTTTGTTCTGGAGGGCAAC+TGG + tig0024137:9190-9209 None:intergenic 50.0%
GCAAGGCCCAAATGTGTGTT+AGG + tig0024137:9219-9238 None:intergenic 50.0%
TGGTTCGTAGGCACAAAGAG+GGG + tig0024137:9241-9260 None:intergenic 50.0%
TTGCGCAGTTGGTTGGAGAA+AGG - tig0024137:9788-9807 Msa1414560:CDS 50.0%
TGCGCAGTTGGTTGGAGAAA+GGG - tig0024137:9789-9808 Msa1414560:CDS 50.0%
GAACAGCTTGCGCAGTTGGT+TGG - tig0024137:9781-9800 Msa1414560:CDS 55.0%
CGTAGGCACAAAGAGGGGCA+AGG + tig0024137:9236-9255 None:intergenic 60.0%
TCGCGAACAGCTTGCGCAGT+TGG - tig0024137:9777-9796 Msa1414560:CDS 60.0%
TGCAGGTCTGATAGCCCGCG+CGG + tig0024137:9165-9184 None:intergenic 65.0%
CTGGAGGGCAACTGGGGTGC+AGG + tig0024137:9182-9201 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0024137 gene 7091 10135 7091 ID=Msa1414560;Name=Msa1414560
tig0024137 mRNA 7091 10135 7091 ID=Msa1414560-mRNA-1;Parent=Msa1414560;Name=Msa1414560-mRNA-1;_AED=0.26;_eAED=0.26;_QI=221|1|1|1|1|1|3|100|183
tig0024137 exon 7091 7486 7091 ID=Msa1414560-mRNA-1:exon:21915;Parent=Msa1414560-mRNA-1
tig0024137 exon 8403 8474 8403 ID=Msa1414560-mRNA-1:exon:21914;Parent=Msa1414560-mRNA-1
tig0024137 exon 9731 10135 9731 ID=Msa1414560-mRNA-1:exon:21913;Parent=Msa1414560-mRNA-1
tig0024137 five_prime_UTR 9915 10135 9915 ID=Msa1414560-mRNA-1:five_prime_utr;Parent=Msa1414560-mRNA-1
tig0024137 CDS 9731 9914 9731 ID=Msa1414560-mRNA-1:cds;Parent=Msa1414560-mRNA-1
tig0024137 CDS 8403 8474 8403 ID=Msa1414560-mRNA-1:cds;Parent=Msa1414560-mRNA-1
tig0024137 CDS 7191 7486 7191 ID=Msa1414560-mRNA-1:cds;Parent=Msa1414560-mRNA-1
tig0024137 three_prime_UTR 7091 7190 7091 ID=Msa1414560-mRNA-1:three_prime_utr;Parent=Msa1414560-mRNA-1
Gene Sequence

>Msa1414560

ATGAAGCAAAGTTCCATGGCCACCATCAATCTAACCACCACTTCTTCTCTTCATCCAAGCCCTTCCTTTCTCACACAAAAACATAACAACCTCATCAAATTCAACCATGCTTCTTCTTTAAGCAAAACATGTGCTCAATCACAAGGGACTGAAACCGGAGTTTCTGAGGATGATTCTTCAATTGGATCTTTATCTTCTTCTCGTGCACAACTGGATCTTTTGGAGCAATTTACATCTACAAGCTCATCAGTCACTGGTTATGAAAGTGATGGCAGCTCTCAGAGACTTACAATTCGCGAACAGCTTGCGCAGTTGGTTGGAGAAAGGGATGATGATTTCAGCCTTCCCTTAGGTAAAAACTTGAAGAAAGTGAGTGCAAAGTTCTTAACAACATCACAAAGGAGAAATATCAAGAGACAGAGTTATCTAAATGAAGTGTCTCAAAGGAATGATTCAACTTTTTTCGCAACTATAGGAGCATTTGTACTTCTTCCACCTCTTATAATACTAGGAATAGCTATATTAACTGGTTATGTACAGCTTTTACCTTGA

Protein sequence

>Msa1414560

MKQSSMATINLTTTSSLHPSPSFLTQKHNNLIKFNHASSLSKTCAQSQGTETGVSEDDSSIGSLSSSRAQLDLLEQFTSTSSSVTGYESDGSSQRLTIREQLAQLVGERDDDFSLPLGKNLKKVSAKFLTTSQRRNIKRQSYLNEVSQRNDSTFFATIGAFVLLPPLIILGIAILTGYVQLLP*