AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432260 MtrunA17_Chr3g0137241 96.084 383 3 2 1 383 1 371 0.0 758
Msa0432260 MtrunA17_Chr1g0149651 66.970 439 86 8 1 383 1 436 0.0 557
Msa0432260 MtrunA17_Chr2g0305101 66.006 353 79 6 31 382 42 354 7.66e-159 452
Msa0432260 MtrunA17_Chr4g0065241 80.709 254 41 3 119 370 71 318 1.68e-148 425
Msa0432260 MtrunA17_Chr5g0398181 67.033 273 78 3 119 385 28 294 1.23e-128 373
Msa0432260 MtrunA17_Chr1g0192791 35.249 261 122 8 119 367 20 245 9.16e-31 119
Msa0432260 MtrunA17_Chr2g0289201 28.102 274 166 4 119 391 118 361 1.01e-28 115
Msa0432260 MtrunA17_Chr1g0151961 32.669 251 139 7 119 367 120 342 1.41e-25 107
Msa0432260 MtrunA17_Chr5g0413201 32.669 251 138 6 119 367 73 294 2.04e-25 105
Msa0432260 MtrunA17_Chr5g0439391 29.032 279 152 7 119 391 47 285 2.45e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432260 AT5G25220.2 64.989 437 81 12 1 383 1 419 9.29e-180 508
Msa0432260 AT5G25220.1 64.908 436 81 12 1 382 1 418 5.68e-179 506
Msa0432260 AT5G11060.1 67.233 412 75 12 1 382 1 382 7.46e-173 489
Msa0432260 AT4G32040.2 62.895 380 126 8 6 383 13 379 2.13e-155 444
Msa0432260 AT4G32040.1 62.895 380 126 8 6 383 13 379 2.94e-155 444
Msa0432260 AT1G62990.1 62.759 290 99 4 96 382 7 290 2.14e-126 367
Msa0432260 AT1G70510.1 33.077 260 137 8 112 367 63 289 2.04e-29 117
Msa0432260 AT1G23380.1 32.616 279 143 9 119 389 86 327 9.57e-29 115
Msa0432260 AT1G70510.2 31.923 260 144 7 112 367 63 293 6.82e-28 112
Msa0432260 AT1G23380.2 32.384 281 143 10 119 389 86 329 6.74e-27 110
Msa0432260 AT4G08150.1 33.205 259 130 8 119 367 135 360 9.79e-26 108
Msa0432260 AT1G62360.1 34.400 250 135 6 119 367 122 343 3.16e-25 106

Find 150 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGTTAATGTGTTAAATAT+TGG 0.253339 3_2:-84474151 None:intergenic
TCTGCTGCCACCATGATATA+AGG 0.271958 3_2:-84473929 None:intergenic
TCACCTATCATTTACTTTGT+TGG 0.277941 3_2:-84473953 None:intergenic
ATCAATAGCTATCTATATTA+TGG 0.294705 3_2:+84469240 Msa0432260:exon
GGTGCTGCAGCTGCAGCTGC+AGG 0.304840 3_2:-84474042 None:intergenic
GATAATAGTATGGGAGGATT+TGG 0.320582 3_2:+84472701 Msa0432260:CDS
TTATATGGAGTATCAATAAA+TGG 0.332298 3_2:-84469106 None:intergenic
ACGTTAATGTGTTAAATATT+GGG 0.333560 3_2:-84474150 None:intergenic
TGCCAGCTGAGCGTCGATCC+TGG 0.345057 3_2:-84469704 None:intergenic
TGTACCTGTTAGACTTTGTA+AGG 0.355039 3_2:-84470903 None:intergenic
AAAGGAGATTGGACAGGAAA+TGG 0.358235 3_2:-84469079 None:intergenic
GTACTCTGCGTTAGGACAAC+AGG 0.363398 3_2:+84469750 Msa0432260:CDS
GGATGGTTCAGATAATAGTA+TGG 0.368115 3_2:+84472691 Msa0432260:CDS
GAAGTGATGAACAACTTATA+TGG 0.369983 3_2:-84469121 None:intergenic
CTTTCCAAACTGCACCTAAC+TGG 0.380352 3_2:+84469341 Msa0432260:CDS
AATTGAAACAGATCAATAAC+TGG 0.381851 3_2:+84473687 Msa0432260:CDS
GTTGTTGTTGTTCTGTGAAA+TGG 0.389827 3_2:-84469291 None:intergenic
TGCCTTTCAGGAAGAGGATA+AGG 0.392331 3_2:+84473637 Msa0432260:intron
CAGTCCTTACAAAGTCTAAC+AGG 0.396414 3_2:+84470899 Msa0432260:CDS
GAGCGTCGATCCTGGGCAAC+TGG 0.397329 3_2:-84469696 None:intergenic
TAAACAACTCGACCACTTCA+TGG 0.399427 3_2:+84469795 Msa0432260:CDS
GAGCCATTGACCGGAGGATT+GGG 0.403988 3_2:-84469464 None:intergenic
GCAAGGTTGGTGCAAGAAAC+CGG 0.410624 3_2:+84473659 Msa0432260:CDS
TATAGATAGCTATTGATTCA+TGG 0.417433 3_2:-84469234 None:intergenic
TGGTGTCGAGGTTGCGAAGA+AGG 0.418558 3_2:-84469375 None:intergenic
GATCCAACAAAGTAAATGAT+AGG 0.419063 3_2:+84473950 Msa0432260:three_prime_UTR
AGACGAGCTGGAAAACTTCC+TGG 0.420513 3_2:+84473080 Msa0432260:CDS
AGTGATGTTAATCTGTTTGA+TGG 0.421723 3_2:+84472662 Msa0432260:CDS
AGGGCGTTGTTGAGCCAGTT+AGG 0.423606 3_2:-84469355 None:intergenic
GAAGTCATCGACGACGTTAC+CGG 0.424039 3_2:+84469517 Msa0432260:CDS
TGAGCCAGTTAGGTGCAGTT+TGG 0.424789 3_2:-84469345 None:intergenic
GGAAGCAGTAATGGCTTGTT+GGG 0.426655 3_2:+84470868 Msa0432260:CDS
GTTCCCAATCCTCCGGTCAA+TGG 0.427348 3_2:+84469461 Msa0432260:CDS
AATGGTGGAGTGGGTTGTCT+TGG 0.431285 3_2:-84469273 None:intergenic
TGGAAGCAGTAATGGCTTGT+TGG 0.435199 3_2:+84470867 Msa0432260:CDS
GAAACGCAAAGGTGAAATAA+TGG 0.435340 3_2:+84469606 Msa0432260:CDS
GGACAGGAAATGGAAAGAAT+AGG 0.436619 3_2:-84469069 None:intergenic
ATCCTGGGCAACTGGTCAAC+CGG 0.438877 3_2:-84469688 None:intergenic
TCAATCAAAGGAAGAGGAAC+TGG 0.439251 3_2:+84473714 Msa0432260:CDS
GAAGTTGGTACTGTTGTTGT+TGG 0.439599 3_2:-84469419 None:intergenic
GCCCAGGATCGACGCTCAGC+TGG 0.442737 3_2:+84469702 Msa0432260:CDS
TAATCTGTTTGATGGAGGTT+TGG 0.446200 3_2:+84472670 Msa0432260:CDS
AGAGCCATTGACCGGAGGAT+TGG 0.446472 3_2:-84469465 None:intergenic
GCCAGCTGAGCGTCGATCCT+GGG 0.452139 3_2:-84469703 None:intergenic
GGTACTGTTGTTGTTGGTTG+TGG 0.453246 3_2:-84469413 None:intergenic
GCCACCATGATATAAGGGTT+TGG 0.453992 3_2:-84473923 None:intergenic
ATTAAAGCATGAGTTGAAAC+AGG 0.455099 3_2:+84472778 Msa0432260:CDS
ATAGAAGCTGTTCATACAAC+GGG 0.456842 3_2:-84469633 None:intergenic
CAGCAGAGGGAGTGATGAAC+TGG 0.457169 3_2:+84469575 Msa0432260:CDS
TTGTCCTAACGCAGAGTACT+TGG 0.459203 3_2:-84469746 None:intergenic
GGGGAATAGAGAGAAAGAAA+TGG 0.460424 3_2:-84469207 None:intergenic
AACCGGCGGTGTCGAGGTTG+AGG 0.460908 3_2:-84469441 None:intergenic
CGCCGGTTGACCAGTTGCCC+AGG 0.465203 3_2:+84469686 Msa0432260:CDS
CAACCTCAGTACTTAAAGAT+TGG 0.466078 3_2:+84473108 Msa0432260:CDS
TTCAACGCATTAGAAGTTGA+AGG 0.469895 3_2:-84473746 None:intergenic
GTTGTTGTTGGTTGTGGCGG+TGG 0.469972 3_2:-84469407 None:intergenic
CTGCTGCCACCATGATATAA+GGG 0.470829 3_2:-84473928 None:intergenic
CCATGCAATGGAAGCAGTAA+TGG 0.471444 3_2:+84470859 Msa0432260:CDS
GTTGCTCCTGTACCTTCCCC+TGG 0.471752 3_2:-84472608 None:intergenic
CTGTTTGATGGAGGTTTGGA+TGG 0.472583 3_2:+84472674 Msa0432260:CDS
CATGGACTCGGACATGTTGT+TGG 0.486135 3_2:-84470841 None:intergenic
TAAATGGTTAGAAAGGAGAT+TGG 0.488612 3_2:-84469090 None:intergenic
AGAGTTCTTACAGTAGGATA+AGG 0.489180 3_2:-84473152 None:intergenic
CGTTACCGGCGCTGGTATGA+AGG 0.491895 3_2:+84469531 Msa0432260:CDS
GTTGCCAAGTACTCTGCGTT+AGG 0.491986 3_2:+84469742 Msa0432260:CDS
ACTGAGACGAGGAAGCTTGA+AGG 0.495890 3_2:+84474019 Msa0432260:three_prime_UTR
GTTTCACCAGGGGAAGGTAC+AGG 0.498577 3_2:+84472602 Msa0432260:CDS
AGTACTGAGGTTGTGTCACC+AGG 0.501554 3_2:-84473098 None:intergenic
CCATTACTGCTTCCATTGCA+TGG 0.504180 3_2:-84470859 None:intergenic
TGTTGCCTCACCGCTTTCCT+CGG 0.505142 3_2:-84469554 None:intergenic
AGGACGGGAGAGCCATTGAC+CGG 0.509843 3_2:-84469473 None:intergenic
CTGTGGTTTCGATGGAGGAC+AGG 0.510607 3_2:-84469493 None:intergenic
GTTCTGTGAAATGGTGGAGT+GGG 0.511127 3_2:-84469282 None:intergenic
GCAAATTTAAGATTATGAAA+AGG 0.513629 3_2:-84473808 None:intergenic
CTGCTTCCATTGCATGGACT+CGG 0.514678 3_2:-84470853 None:intergenic
TTGACCGGAGGATTGGGAAC+CGG 0.515320 3_2:-84469458 None:intergenic
TGACTTCGCTGTGGTTTCGA+TGG 0.516848 3_2:-84469501 None:intergenic
GTATCAATAAATGGTTAGAA+AGG 0.520381 3_2:-84469097 None:intergenic
ACTTATTTCTAATTCAAGAT+CGG 0.521991 3_2:-84473843 None:intergenic
TCATTCTCTGTTAGAACAAG+AGG 0.524064 3_2:-84472725 None:intergenic
GGTGTCGAGGTTGCGAAGAA+GGG 0.525959 3_2:-84469374 None:intergenic
GAAAATTGTGGACATAAGAG+AGG 0.527462 3_2:+84473043 Msa0432260:CDS
GGTGTCGAGGTTGAGGAAGT+TGG 0.532035 3_2:-84469434 None:intergenic
ATTGGGAACCGGCGGTGTCG+AGG 0.533014 3_2:-84469447 None:intergenic
AGCTATTGATTCATGGTGAA+GGG 0.536452 3_2:-84469227 None:intergenic
GATGGTTCAGATAATAGTAT+GGG 0.538925 3_2:+84472692 Msa0432260:CDS
CGTTGAAGAGCAAGCGCAAG+AGG 0.539470 3_2:+84473762 Msa0432260:CDS
GGAAGAGGATAAGGCAAGGT+TGG 0.540633 3_2:+84473646 Msa0432260:intron
GTTGTTGTTCTGTGAAATGG+TGG 0.541053 3_2:-84469288 None:intergenic
GAGTGGTGAGGATCGGAGGT+TGG 0.542790 3_2:-84469319 None:intergenic
CTTCGCTGTGGTTTCGATGG+AGG 0.543312 3_2:-84469498 None:intergenic
AGCGGTGAGGCAACAGCAGA+GGG 0.545790 3_2:+84469562 Msa0432260:CDS
CTCGGCCTTCATACCAGCGC+CGG 0.547542 3_2:-84469536 None:intergenic
CCTCAGTACTTAAAGATTGG+TGG 0.548243 3_2:+84473111 Msa0432260:CDS
GTTTCGATGGAGGACAGGAC+GGG 0.549706 3_2:-84469488 None:intergenic
GAAAGAGTGGTGAGGATCGG+AGG 0.551627 3_2:-84469323 None:intergenic
GGTTAGAAAGGAGATTGGAC+AGG 0.556984 3_2:-84469085 None:intergenic
GAATTAGAAATAAGTAATGC+AGG 0.558191 3_2:+84473851 Msa0432260:CDS
ATCGACGACGTTACCGGCGC+TGG 0.558499 3_2:+84469523 Msa0432260:CDS
AGAACCAAACCCTTATATCA+TGG 0.559837 3_2:+84473919 Msa0432260:three_prime_UTR
AGAGAATGAGAGGTCCCTCA+TGG 0.567340 3_2:+84472739 Msa0432260:CDS
ATAACTGGTTTATCAATCAA+AGG 0.567448 3_2:+84473702 Msa0432260:CDS
TAGCTATTGATTCATGGTGA+AGG 0.567933 3_2:-84469228 None:intergenic
TGTTCTGTGAAATGGTGGAG+TGG 0.567991 3_2:-84469283 None:intergenic
AAGCGGTGAGGCAACAGCAG+AGG 0.569122 3_2:+84469561 Msa0432260:CDS
CAAGGTTGGTGCAAGAAACC+GGG 0.570646 3_2:+84473660 Msa0432260:CDS
ACCGCCGGTTCCCAATCCTC+CGG 0.570735 3_2:+84469454 Msa0432260:CDS
CAGCTGCAGCTGCAGCACCT+AGG 0.571350 3_2:+84474046 Msa0432260:three_prime_UTR
TTCCTCAACCTCGACACCGC+CGG 0.572536 3_2:+84469439 Msa0432260:CDS
CGGCGCTGGTATGAAGGCCG+AGG 0.574579 3_2:+84469537 Msa0432260:CDS
GGTTTATCAATCAAAGGAAG+AGG 0.579093 3_2:+84473708 Msa0432260:CDS
TTGGAAAGAGTGGTGAGGAT+CGG 0.583594 3_2:-84469326 None:intergenic
CCACCAATCTTTAAGTACTG+AGG 0.588799 3_2:-84473111 None:intergenic
ATTCTCAATCTCAAACACTC+TGG 0.590285 3_2:-84474259 None:intergenic
GGTTTCGATGGAGGACAGGA+CGG 0.592132 3_2:-84469489 None:intergenic
AAAGGTAAAATACCATGAAG+TGG 0.598924 3_2:-84469807 None:intergenic
TAGGTGCAGTTTGGAAAGAG+TGG 0.600373 3_2:-84469336 None:intergenic
TGGCGTTGACGTTGGTGTCG+AGG 0.601937 3_2:-84469387 None:intergenic
GGGTTATAAAGAGAAAATTG+TGG 0.610746 3_2:+84473031 Msa0432260:intron
TTGTTCTAACAGAGAATGAG+AGG 0.611125 3_2:+84472729 Msa0432260:CDS
TGTGGCGGTGGCGTTGACGT+TGG 0.611369 3_2:-84469395 None:intergenic
GCTATTGATTCATGGTGAAG+GGG 0.615964 3_2:-84469226 None:intergenic
GGTTCAGATAATAGTATGGG+AGG 0.618510 3_2:+84472695 Msa0432260:CDS
GATGTTAATCTGTTTGATGG+AGG 0.621633 3_2:+84472665 Msa0432260:CDS
TGTGTAACAGGAGTTTCACC+AGG 0.621894 3_2:+84472590 Msa0432260:intron
TGGCAGAAAGCGAAACGCAA+AGG 0.622833 3_2:+84469595 Msa0432260:CDS
GATCTGTTTCAATTGCAACC+CGG 0.623157 3_2:-84473678 None:intergenic
ACCGGAGGATTGGGAACCGG+CGG 0.625286 3_2:-84469455 None:intergenic
GGGCAACTGGTCAACCGGCG+TGG 0.628223 3_2:-84469683 None:intergenic
ATGTCTTACACGTTCCATGA+GGG 0.635061 3_2:-84472753 None:intergenic
ACAGGAGTTTCACCAGGGGA+AGG 0.636992 3_2:+84472596 Msa0432260:intron
ACATGTCCGAGTCCATGCAA+TGG 0.642083 3_2:+84470847 Msa0432260:CDS
ACTGTTGTTGTTGGTTGTGG+CGG 0.642777 3_2:-84469410 None:intergenic
CATGTCTTACACGTTCCATG+AGG 0.645094 3_2:-84472754 None:intergenic
GATAGAAGCTGTTCATACAA+CGG 0.647941 3_2:-84469634 None:intergenic
TACTCTGCGTTAGGACAACA+GGG 0.650241 3_2:+84469751 Msa0432260:CDS
GGTATGAAGGCCGAGGAAAG+CGG 0.652275 3_2:+84469544 Msa0432260:CDS
ACGGGAGAGCCATTGACCGG+AGG 0.652694 3_2:-84469470 None:intergenic
GTGTTTGAGAATCGCCACGC+CGG 0.654940 3_2:+84469669 Msa0432260:CDS
TTCAGGAAGAGGATAAGGCA+AGG 0.655439 3_2:+84473642 Msa0432260:intron
AGTTGCTACTAGCTAGTGTG+TGG 0.669965 3_2:-84469154 None:intergenic
AATGCAGGTGATAAAAGTGA+CGG 0.675503 3_2:+84473866 Msa0432260:CDS
GGTGGCAATCACATTCAAAG+TGG 0.680210 3_2:+84473129 Msa0432260:CDS
CGTCGTCGATGACTTCGCTG+TGG 0.682559 3_2:-84469510 None:intergenic
GCAGTTTGGAAAGAGTGGTG+AGG 0.695329 3_2:-84469331 None:intergenic
GTGTAACAGGAGTTTCACCA+GGG 0.706920 3_2:+84472591 Msa0432260:intron
ACCAAACCCTTATATCATGG+TGG 0.707203 3_2:+84473922 Msa0432260:three_prime_UTR
GAAGGCCGAGGAAAGCGGTG+AGG 0.708487 3_2:+84469549 Msa0432260:CDS
ACAGAGTTAAAACTGAGACG+AGG 0.728174 3_2:+84474008 Msa0432260:three_prime_UTR
TGTAACAGGAGTTTCACCAG+GGG 0.775474 3_2:+84472592 Msa0432260:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATAAAAATAAAAT+TGG + chr3_2:84474190-84474209 Msa0432260:three_prime_UTR 0.0%
!!! AATTACAATATTTTTTTGTA+TGG + chr3_2:84470542-84470561 Msa0432260:intron 10.0%
!! TAAAAATAATAATGATTAGT+GGG - chr3_2:84473595-84473614 None:intergenic 10.0%
!! TTTGTAAATATTATTGAGAA+AGG - chr3_2:84469828-84469847 None:intergenic 15.0%
!!! AGAAAAGTGTATAAATAAAT+AGG + chr3_2:84470133-84470152 Msa0432260:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr3_2:84470196-84470215 Msa0432260:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr3_2:84470197-84470216 Msa0432260:intron 15.0%
!!! AATTTTCTGCAATAATATTT+TGG + chr3_2:84470598-84470617 Msa0432260:intron 15.0%
!!! TATTTTTTATTTTTTTGTCG+TGG + chr3_2:84470676-84470695 Msa0432260:intron 15.0%
!!! ATAATTTATTTTCTGTTGTA+TGG + chr3_2:84470742-84470761 Msa0432260:intron 15.0%
!!! ATTTATACTTTTCTCAATAT+AGG + chr3_2:84471133-84471152 Msa0432260:intron 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG - chr3_2:84471342-84471361 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG - chr3_2:84471343-84471362 None:intergenic 15.0%
!!! CATATTTAAATACTTTTCAT+TGG + chr3_2:84471480-84471499 Msa0432260:intron 15.0%
!!! TTTAATAAAAGTACCAATTA+AGG - chr3_2:84471543-84471562 None:intergenic 15.0%
!! AATGATAATTAAGATCTTAA+TGG + chr3_2:84471675-84471694 Msa0432260:intron 15.0%
!! CTAATAAATTATTCATTATG+TGG - chr3_2:84472310-84472329 None:intergenic 15.0%
!! AATTTATTAGTAAGATAGAA+TGG + chr3_2:84472320-84472339 Msa0432260:intron 15.0%
!! CTAAAAATAATAATGATTAG+TGG - chr3_2:84473596-84473615 None:intergenic 15.0%
!! AATAAAAATAAAATTGGTAG+AGG + chr3_2:84474196-84474215 Msa0432260:three_prime_UTR 15.0%
!!! CTTTCAATTACTATTTTTTT+TGG - chr3_2:84474357-84474376 None:intergenic 15.0%
!!! TTATATGGAGTATCAATAAA+TGG - chr3_2:84469109-84469128 None:intergenic 20.0%
!! ATCAATAGCTATCTATATTA+TGG + chr3_2:84469240-84469259 Msa0432260:exon 20.0%
!!! GCAAAACTTAAATTTTAACT+CGG + chr3_2:84469976-84469995 Msa0432260:intron 20.0%
!! TGTATAAATAAATAGGAAAG+TGG + chr3_2:84470140-84470159 Msa0432260:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr3_2:84470156-84470175 Msa0432260:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr3_2:84470229-84470248 Msa0432260:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr3_2:84470266-84470285 Msa0432260:intron 20.0%
!! AAAATAATTAAGGTAGCTAA+TGG + chr3_2:84470371-84470390 Msa0432260:intron 20.0%
!! TATGTTAAAATAAGCTCAAA+AGG - chr3_2:84470438-84470457 None:intergenic 20.0%
!!! TACAATATTTTTTTGTATGG+TGG + chr3_2:84470545-84470564 Msa0432260:intron 20.0%
!! TTCTCAATATAGGAATTATA+CGG + chr3_2:84471143-84471162 Msa0432260:intron 20.0%
!!! TATTACTCATTTTTACAAGT+GGG - chr3_2:84471422-84471441 None:intergenic 20.0%
!! TGTTTAATATGTAAAGATAG+TGG + chr3_2:84471455-84471474 Msa0432260:intron 20.0%
!! GTTTAATATGTAAAGATAGT+GGG + chr3_2:84471456-84471475 Msa0432260:intron 20.0%
!! TAAATTATTCATGACGTATT+TGG - chr3_2:84471834-84471853 None:intergenic 20.0%
!!! CATATTGATTAATATCCAAT+TGG - chr3_2:84472103-84472122 None:intergenic 20.0%
!! ATTATTCATTATGTGGTTTA+AGG - chr3_2:84472303-84472322 None:intergenic 20.0%
!! AAATAACATGCTAAAAAGTA+AGG - chr3_2:84472433-84472452 None:intergenic 20.0%
!! AATTAGTACTCATATCTAAT+GGG - chr3_2:84472549-84472568 None:intergenic 20.0%
!! TAATTAGTACTCATATCTAA+TGG - chr3_2:84472550-84472569 None:intergenic 20.0%
!! GATTACATTAAATGTTGAAT+AGG + chr3_2:84472814-84472833 Msa0432260:intron 20.0%
!!! GCAAATTTAAGATTATGAAA+AGG - chr3_2:84473811-84473830 None:intergenic 20.0%
!!! ACTTATTTCTAATTCAAGAT+CGG - chr3_2:84473846-84473865 None:intergenic 20.0%
!! ACGTTAATGTGTTAAATATT+GGG - chr3_2:84474153-84474172 None:intergenic 20.0%
!!! TTGAGATTGAGAATTTTATA+AGG + chr3_2:84474268-84474287 Msa0432260:three_prime_UTR 20.0%
! GTATCAATAAATGGTTAGAA+AGG - chr3_2:84469100-84469119 None:intergenic 25.0%
!!! TATAGATAGCTATTGATTCA+TGG - chr3_2:84469237-84469256 None:intergenic 25.0%
!!! CAATTTCACTTTTGCAAAAA+AGG - chr3_2:84470021-84470040 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr3_2:84470155-84470174 Msa0432260:intron 25.0%
!! TTGAAATGGATCAGTTATTT+TGG + chr3_2:84470243-84470262 Msa0432260:intron 25.0%
!!! TGAAATGGATCAGTTATTTT+GGG + chr3_2:84470244-84470263 Msa0432260:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr3_2:84470265-84470284 Msa0432260:intron 25.0%
!! ACTGAAAATAAGTCTAAAGT+AGG + chr3_2:84470328-84470347 Msa0432260:intron 25.0%
!!! TTTCTGCAATAATATTTTGG+CGG + chr3_2:84470601-84470620 Msa0432260:intron 25.0%
! AAAACATAATTACACTCCAT+TGG - chr3_2:84470657-84470676 None:intergenic 25.0%
!! TATTTTCTGTTGTATGGTTA+CGG + chr3_2:84470748-84470767 Msa0432260:intron 25.0%
! AGGAATAAGCAACAAAAATT+TGG - chr3_2:84471017-84471036 None:intergenic 25.0%
! CATTCGTGTAATTTATCTTT+AGG - chr3_2:84471037-84471056 None:intergenic 25.0%
! TCTCAATATAGGAATTATAC+GGG + chr3_2:84471144-84471163 Msa0432260:intron 25.0%
! TCTAAGAAAATTTGAAAAGG+AGG - chr3_2:84471181-84471200 None:intergenic 25.0%
!!! TGCTCTAAGAAAATTTGAAA+AGG - chr3_2:84471184-84471203 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr3_2:84471354-84471373 Msa0432260:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG - chr3_2:84471381-84471400 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG - chr3_2:84471382-84471401 None:intergenic 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr3_2:84471354-84471373 Msa0432260:intron 25.0%
!!! CTATTACTCATTTTTACAAG+TGG - chr3_2:84471423-84471442 None:intergenic 25.0%
! TCCTGTACATATGAATTATT+TGG + chr3_2:84471748-84471767 Msa0432260:intron 25.0%
! CCTGTACATATGAATTATTT+GGG + chr3_2:84471749-84471768 Msa0432260:intron 25.0%
!! ACATATGAATTATTTGGGTT+AGG + chr3_2:84471754-84471773 Msa0432260:intron 25.0%
!! CATATGAATTATTTGGGTTA+GGG + chr3_2:84471755-84471774 Msa0432260:intron 25.0%
! ACAATTCTGTCAAAAAAACA+AGG - chr3_2:84471981-84472000 None:intergenic 25.0%
! AAAGTCCAAACAATTCATAT+GGG - chr3_2:84472227-84472246 None:intergenic 25.0%
! ATATGAATTGTTTGGACTTT+GGG + chr3_2:84472227-84472246 Msa0432260:intron 25.0%
! AACATCATAGTTATACTGTA+TGG + chr3_2:84472373-84472392 Msa0432260:intron 25.0%
! AATTCTGTCAAAAAAAAGCA+AGG - chr3_2:84472408-84472427 None:intergenic 25.0%
! GTATCTATATTCAAAGTACA+TGG - chr3_2:84472466-84472485 None:intergenic 25.0%
! AACATTTAATGTAATCCATG+AGG - chr3_2:84472810-84472829 None:intergenic 25.0%
! CATTAAATGTTGAATAGGAA+AGG + chr3_2:84472819-84472838 Msa0432260:intron 25.0%
!!! GTATGTTTTGAATCTGAAAA+AGG - chr3_2:84473209-84473228 None:intergenic 25.0%
! TTTCAGATTCAAAACATACT+TGG + chr3_2:84473210-84473229 Msa0432260:intron 25.0%
! AAGCTATCTTAGATATCTTA+CGG + chr3_2:84473440-84473459 Msa0432260:intron 25.0%
! TAAATATTTGAGAACCTGAT+TGG - chr3_2:84473495-84473514 None:intergenic 25.0%
!!! AACATGTGAACTATTTTGAA+TGG - chr3_2:84473542-84473561 None:intergenic 25.0%
! AATTGAAACAGATCAATAAC+TGG + chr3_2:84473687-84473706 Msa0432260:CDS 25.0%
!! ATAACTGGTTTATCAATCAA+AGG + chr3_2:84473702-84473721 Msa0432260:CDS 25.0%
! GAATTAGAAATAAGTAATGC+AGG + chr3_2:84473851-84473870 Msa0432260:CDS 25.0%
! GACGTTAATGTGTTAAATAT+TGG - chr3_2:84474154-84474173 None:intergenic 25.0%
TAAATGGTTAGAAAGGAGAT+TGG - chr3_2:84469093-84469112 None:intergenic 30.0%
GAAGTGATGAACAACTTATA+TGG - chr3_2:84469124-84469143 None:intergenic 30.0%
AAGAAATGGAGAAAAAAGGA+GGG - chr3_2:84469196-84469215 None:intergenic 30.0%
AAAGAAATGGAGAAAAAAGG+AGG - chr3_2:84469197-84469216 None:intergenic 30.0%
GAGAAAGAAATGGAGAAAAA+AGG - chr3_2:84469200-84469219 None:intergenic 30.0%
AAAGGTAAAATACCATGAAG+TGG - chr3_2:84469810-84469829 None:intergenic 30.0%
! TGTCAATTAATGGATGGAAA+TGG + chr3_2:84469892-84469911 Msa0432260:intron 30.0%
! TTAATGGATGGAAATGGATT+TGG + chr3_2:84469898-84469917 Msa0432260:intron 30.0%
AAGTGAAATTGAAACATGCA+CGG + chr3_2:84470030-84470049 Msa0432260:intron 30.0%
CAAAGTAGATCAATTATACC+GGG - chr3_2:84470096-84470115 None:intergenic 30.0%
CCAAAGTAGATCAATTATAC+CGG - chr3_2:84470097-84470116 None:intergenic 30.0%
!!! CCTTTTGAGCTTATTTTAAC+CGG + chr3_2:84470435-84470454 Msa0432260:intron 30.0%
TATACATAAATCCTTGCCAA+TGG + chr3_2:84470638-84470657 Msa0432260:intron 30.0%
AAATTTGTGTCTACAGTAAC+TGG - chr3_2:84470711-84470730 None:intergenic 30.0%
! GTTACTGTAGACACAAATTT+TGG + chr3_2:84470711-84470730 Msa0432260:intron 30.0%
CTCAATATAGGAATTATACG+GGG + chr3_2:84471145-84471164 Msa0432260:intron 30.0%
TATTTAAGGAGTCCTTGTTA+GGG + chr3_2:84471596-84471615 Msa0432260:intron 30.0%
!! TTAATGGTTGATAGTCAAAG+AGG + chr3_2:84471691-84471710 Msa0432260:intron 30.0%
TAATTCATATGTACAGGACA+AGG - chr3_2:84471746-84471765 None:intergenic 30.0%
CCCAAATAATTCATATGTAC+AGG - chr3_2:84471752-84471771 None:intergenic 30.0%
ATTCATGACGTATTTGGTAT+AGG - chr3_2:84471828-84471847 None:intergenic 30.0%
TCAAAAAAACAAGGACAACT+GGG - chr3_2:84471972-84471991 None:intergenic 30.0%
! TTTCTTGGTGGATAATAGTT+TGG - chr3_2:84472028-84472047 None:intergenic 30.0%
ACAAGTTAGCTAATCTTTCT+TGG - chr3_2:84472043-84472062 None:intergenic 30.0%
!!! CATACATCACTTTTTCCAAT+TGG + chr3_2:84472085-84472104 Msa0432260:intron 30.0%
AGTAATAATCAAGCCCTTAA+TGG + chr3_2:84472149-84472168 Msa0432260:intron 30.0%
CTTTGACTATCAACCATTAA+GGG - chr3_2:84471691-84471710 None:intergenic 30.0%
CAAAGTCCAAACAATTCATA+TGG - chr3_2:84472228-84472247 None:intergenic 30.0%
CATATGAATTGTTTGGACTT+TGG + chr3_2:84472226-84472245 Msa0432260:intron 30.0%
AAAAAAAAGCAAGGACAACT+GGG - chr3_2:84472399-84472418 None:intergenic 30.0%
ATTCAAAGTACATGGTAGTT+TGG - chr3_2:84472458-84472477 None:intergenic 30.0%
AGTGATGTTAATCTGTTTGA+TGG + chr3_2:84472662-84472681 Msa0432260:CDS 30.0%
GATGGTTCAGATAATAGTAT+GGG + chr3_2:84472692-84472711 Msa0432260:CDS 30.0%
! ATTAAAGCATGAGTTGAAAC+AGG + chr3_2:84472778-84472797 Msa0432260:CDS 30.0%
TGTGTTGAAACTTGAAATGA+TGG - chr3_2:84472886-84472905 None:intergenic 30.0%
CAATATAGAGTTCTTACAGT+AGG - chr3_2:84473161-84473180 None:intergenic 30.0%
AACATGTTATAGATCCAATC+AGG + chr3_2:84473478-84473497 Msa0432260:intron 30.0%
GATCCAACAAAGTAAATGAT+AGG + chr3_2:84473950-84473969 Msa0432260:three_prime_UTR 30.0%
TCACCTATCATTTACTTTGT+TGG - chr3_2:84473956-84473975 None:intergenic 30.0%
! TAAACTTTTTGTTGCATCCT+AGG - chr3_2:84474066-84474085 None:intergenic 30.0%
!! AGCTATTGATTCATGGTGAA+GGG - chr3_2:84469230-84469249 None:intergenic 35.0%
!! TAGCTATTGATTCATGGTGA+AGG - chr3_2:84469231-84469250 None:intergenic 35.0%
! GTTGTTGTTGTTCTGTGAAA+TGG - chr3_2:84469294-84469313 None:intergenic 35.0%
GAAACGCAAAGGTGAAATAA+TGG + chr3_2:84469606-84469625 Msa0432260:CDS 35.0%
ATAGAAGCTGTTCATACAAC+GGG - chr3_2:84469636-84469655 None:intergenic 35.0%
GATAGAAGCTGTTCATACAA+CGG - chr3_2:84469637-84469656 None:intergenic 35.0%
AAGCTTTGCGTGTCAATTAA+TGG + chr3_2:84469882-84469901 Msa0432260:intron 35.0%
TTTGCGTGTCAATTAATGGA+TGG + chr3_2:84469886-84469905 Msa0432260:intron 35.0%
! TGGAAAATTTTCTCTCTCTC+TGG + chr3_2:84469918-84469937 Msa0432260:intron 35.0%
CCGGTATAATTGATCTACTT+TGG + chr3_2:84470094-84470113 Msa0432260:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr3_2:84470279-84470298 Msa0432260:intron 35.0%
CATGTTAAGATAGGCTCAAA+AGG - chr3_2:84470408-84470427 None:intergenic 35.0%
GGTCAAGTTCATGTTAAGAT+AGG - chr3_2:84470417-84470436 None:intergenic 35.0%
CCGGTTAAAATAAGCTCAAA+AGG - chr3_2:84470468-84470487 None:intergenic 35.0%
TTTAACCGGCATGTTTATGT+AGG + chr3_2:84470479-84470498 Msa0432260:intron 35.0%
TTAACCGGCATGTTTATGTA+GGG + chr3_2:84470480-84470499 Msa0432260:intron 35.0%
TTTATGTATAGAAGCTCGCA+TGG - chr3_2:84470628-84470647 None:intergenic 35.0%
ATAATTACACTCCATTGGCA+AGG - chr3_2:84470652-84470671 None:intergenic 35.0%
TGTACCTGTTAGACTTTGTA+AGG - chr3_2:84470906-84470925 None:intergenic 35.0%
! GTATGTTTTCGGTTCAGTAT+AGG + chr3_2:84471084-84471103 Msa0432260:intron 35.0%
!! TTTTCTTAGAGCATCTCCAA+TGG + chr3_2:84471191-84471210 Msa0432260:intron 35.0%
! TTTCTTAGAGCATCTCCAAT+GGG + chr3_2:84471192-84471211 Msa0432260:intron 35.0%
TATAGTTGTCCGTTCCTTAA+CGG - chr3_2:84471285-84471304 None:intergenic 35.0%
TCTTATGAGTGTATTGCCAT+TGG + chr3_2:84471506-84471525 Msa0432260:intron 35.0%
TAAATAAGTGATGTGTCACG+TGG + chr3_2:84471569-84471588 Msa0432260:intron 35.0%
AAATAAGTGATGTGTCACGT+GGG + chr3_2:84471570-84471589 Msa0432260:intron 35.0%
CTATTTAAGGAGTCCTTGTT+AGG + chr3_2:84471595-84471614 Msa0432260:intron 35.0%
GCTGTTATAGCTATACTGTA+TGG + chr3_2:84471946-84471965 Msa0432260:intron 35.0%
GTCAAAAAAACAAGGACAAC+TGG - chr3_2:84471973-84471992 None:intergenic 35.0%
ATAATAACATGCTACGAGCA+AGG - chr3_2:84472004-84472023 None:intergenic 35.0%
AGTTAGCTAATCTTTCTTGG+TGG - chr3_2:84472040-84472059 None:intergenic 35.0%
CCTTTGACTATCAACCATTA+AGG - chr3_2:84472166-84472185 None:intergenic 35.0%
!! CCTTAATGGTTGATAGTCAA+AGG + chr3_2:84472163-84472182 Msa0432260:intron 35.0%
!! TAATGGTTGATAGTCAAAGG+AGG + chr3_2:84472166-84472185 Msa0432260:intron 35.0%
CAAACAATTCATATGGGACA+AGG - chr3_2:84472221-84472240 None:intergenic 35.0%
CTTGTCCCATATGAATTGTT+TGG + chr3_2:84472219-84472238 Msa0432260:intron 35.0%
! AATTGTTTGGACTTTGGGTT+AGG + chr3_2:84472232-84472251 Msa0432260:intron 35.0%
! ATTGTTTGGACTTTGGGTTA+GGG + chr3_2:84472233-84472252 Msa0432260:intron 35.0%
CAAAAAAAAGCAAGGACAAC+TGG - chr3_2:84472400-84472419 None:intergenic 35.0%
TTTATCTCCACATGTGTAAC+AGG + chr3_2:84472578-84472597 Msa0432260:intron 35.0%
GATGTTAATCTGTTTGATGG+AGG + chr3_2:84472665-84472684 Msa0432260:CDS 35.0%
TAATCTGTTTGATGGAGGTT+TGG + chr3_2:84472670-84472689 Msa0432260:CDS 35.0%
GGATGGTTCAGATAATAGTA+TGG + chr3_2:84472691-84472710 Msa0432260:CDS 35.0%
GATAATAGTATGGGAGGATT+TGG + chr3_2:84472701-84472720 Msa0432260:CDS 35.0%
TCATTCTCTGTTAGAACAAG+AGG - chr3_2:84472728-84472747 None:intergenic 35.0%
TTGTTCTAACAGAGAATGAG+AGG + chr3_2:84472729-84472748 Msa0432260:CDS 35.0%
CCATTCTCTAATACACGTTT+CGG - chr3_2:84472993-84473012 None:intergenic 35.0%
CGAAACGTGTATTAGAGAAT+GGG + chr3_2:84472991-84473010 Msa0432260:intron 35.0%
!!! TGGGTTGCTCTTATTTTTGT+AGG + chr3_2:84473010-84473029 Msa0432260:intron 35.0%
!!! GGGTTGCTCTTATTTTTGTA+GGG + chr3_2:84473011-84473030 Msa0432260:intron 35.0%
GAAAATTGTGGACATAAGAG+AGG + chr3_2:84473043-84473062 Msa0432260:CDS 35.0%
CAACCTCAGTACTTAAAGAT+TGG + chr3_2:84473108-84473127 Msa0432260:CDS 35.0%
AGAGTTCTTACAGTAGGATA+AGG - chr3_2:84473155-84473174 None:intergenic 35.0%
GGTTTATCAATCAAAGGAAG+AGG + chr3_2:84473708-84473727 Msa0432260:CDS 35.0%
TTCAACGCATTAGAAGTTGA+AGG - chr3_2:84473749-84473768 None:intergenic 35.0%
AATGCAGGTGATAAAAGTGA+CGG + chr3_2:84473866-84473885 Msa0432260:CDS 35.0%
ACGGTCGTTACATGTAAAAA+TGG + chr3_2:84473885-84473904 Msa0432260:exon 35.0%
AGAACCAAACCCTTATATCA+TGG + chr3_2:84473919-84473938 Msa0432260:three_prime_UTR 35.0%
ATTCTCAATCTCAAACACTC+TGG - chr3_2:84474262-84474281 None:intergenic 35.0%
GGACAGGAAATGGAAAGAAT+AGG - chr3_2:84469072-84469091 None:intergenic 40.0%
AAAGGAGATTGGACAGGAAA+TGG - chr3_2:84469082-84469101 None:intergenic 40.0%
AGAAAAAAGGAGGGAAGAGA+GGG - chr3_2:84469187-84469206 None:intergenic 40.0%
GGGGAATAGAGAGAAAGAAA+TGG - chr3_2:84469210-84469229 None:intergenic 40.0%
!! GCTATTGATTCATGGTGAAG+GGG - chr3_2:84469229-84469248 None:intergenic 40.0%
! GTTGTTGTTCTGTGAAATGG+TGG - chr3_2:84469291-84469310 None:intergenic 40.0%
!! GAAGTTGGTACTGTTGTTGT+TGG - chr3_2:84469422-84469441 None:intergenic 40.0%
TAAACAACTCGACCACTTCA+TGG + chr3_2:84469795-84469814 Msa0432260:CDS 40.0%
GTAGATCAATTATACCGGGA+CGG - chr3_2:84470092-84470111 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr3_2:84470280-84470299 Msa0432260:intron 40.0%
AACTCCCTACATAAACATGC+CGG - chr3_2:84470487-84470506 None:intergenic 40.0%
CAGTCCTTACAAAGTCTAAC+AGG + chr3_2:84470899-84470918 Msa0432260:CDS 40.0%
ACTGAACCGAAAACATACTG+CGG - chr3_2:84471082-84471101 None:intergenic 40.0%
TATCCCAATATGAGACCCTA+TGG - chr3_2:84471110-84471129 None:intergenic 40.0%
! TTCTTAGAGCATCTCCAATG+GGG + chr3_2:84471193-84471212 Msa0432260:intron 40.0%
ATCTTTCTTCCTCCAATGGA+GGG - chr3_2:84471255-84471274 None:intergenic 40.0%
AATCTTTCTTCCTCCAATGG+AGG - chr3_2:84471256-84471275 None:intergenic 40.0%
CTCAATCTTTCTTCCTCCAA+TGG - chr3_2:84471259-84471278 None:intergenic 40.0%
GAAAGATTGAGTTCCCGTTA+AGG + chr3_2:84471268-84471287 Msa0432260:intron 40.0%
ATTGAGTTCCCGTTAAGGAA+CGG + chr3_2:84471273-84471292 Msa0432260:intron 40.0%
ATAGTTGTCCGTTCCTTAAC+GGG - chr3_2:84471284-84471303 None:intergenic 40.0%
TCTCTCTCCAGAGTAACTAA+CGG + chr3_2:84471314-84471333 Msa0432260:intron 40.0%
TAAGGACTCAATGACTCCAA+TGG - chr3_2:84471525-84471544 None:intergenic 40.0%
GGAGTCATTGAGTCCTTAAT+TGG + chr3_2:84471527-84471546 Msa0432260:intron 40.0%
AATAAGTGATGTGTCACGTG+GGG + chr3_2:84471571-84471590 Msa0432260:intron 40.0%
ACAATGGTAGTTCCCTAACA+AGG - chr3_2:84471611-84471630 None:intergenic 40.0%
TTGTTAGGGAACTACCATTG+TGG + chr3_2:84471610-84471629 Msa0432260:intron 40.0%
TCAAAGAGGAACATGACTAC+AGG + chr3_2:84471705-84471724 Msa0432260:intron 40.0%
TGATAGTCAAAGGAGGAACA+TGG + chr3_2:84472173-84472192 Msa0432260:intron 40.0%
CAATTCATATGGGACAAGGA+AGG - chr3_2:84472217-84472236 None:intergenic 40.0%
TGAAACTCCTGTTACACATG+TGG - chr3_2:84472588-84472607 None:intergenic 40.0%
GGTTCAGATAATAGTATGGG+AGG + chr3_2:84472695-84472714 Msa0432260:CDS 40.0%
ATGTCTTACACGTTCCATGA+GGG - chr3_2:84472756-84472775 None:intergenic 40.0%
! AGCATGAGTTGAAACAGGTA+CGG + chr3_2:84472783-84472802 Msa0432260:intron 40.0%
CCGAAACGTGTATTAGAGAA+TGG + chr3_2:84472990-84473009 Msa0432260:intron 40.0%
! CCACCAATCTTTAAGTACTG+AGG - chr3_2:84473114-84473133 None:intergenic 40.0%
CCTCAGTACTTAAAGATTGG+TGG + chr3_2:84473111-84473130 Msa0432260:CDS 40.0%
GCTTGATCATAGACAAGCAA+GGG - chr3_2:84473309-84473328 None:intergenic 40.0%
TGCTTGATCATAGACAAGCA+AGG - chr3_2:84473310-84473329 None:intergenic 40.0%
GATATGTGTTTGTGCCTTTC+AGG + chr3_2:84473625-84473644 Msa0432260:intron 40.0%
GATCTGTTTCAATTGCAACC+CGG - chr3_2:84473681-84473700 None:intergenic 40.0%
TCAATCAAAGGAAGAGGAAC+TGG + chr3_2:84473714-84473733 Msa0432260:CDS 40.0%
ACCAAACCCTTATATCATGG+TGG + chr3_2:84473922-84473941 Msa0432260:three_prime_UTR 40.0%
ACAGAGTTAAAACTGAGACG+AGG + chr3_2:84474008-84474027 Msa0432260:three_prime_UTR 40.0%
GGTTAGAAAGGAGATTGGAC+AGG - chr3_2:84469088-84469107 None:intergenic 45.0%
AGTTGCTACTAGCTAGTGTG+TGG - chr3_2:84469157-84469176 None:intergenic 45.0%
GAGAAAAAAGGAGGGAAGAG+AGG - chr3_2:84469188-84469207 None:intergenic 45.0%
! GTTCTGTGAAATGGTGGAGT+GGG - chr3_2:84469285-84469304 None:intergenic 45.0%
! TGTTCTGTGAAATGGTGGAG+TGG - chr3_2:84469286-84469305 None:intergenic 45.0%
TTGGAAAGAGTGGTGAGGAT+CGG - chr3_2:84469329-84469348 None:intergenic 45.0%
TAGGTGCAGTTTGGAAAGAG+TGG - chr3_2:84469339-84469358 None:intergenic 45.0%
CTTTCCAAACTGCACCTAAC+TGG + chr3_2:84469341-84469360 Msa0432260:CDS 45.0%
! ACTGTTGTTGTTGGTTGTGG+CGG - chr3_2:84469413-84469432 None:intergenic 45.0%
! GGTACTGTTGTTGTTGGTTG+TGG - chr3_2:84469416-84469435 None:intergenic 45.0%
! TTGTCCTAACGCAGAGTACT+TGG - chr3_2:84469749-84469768 None:intergenic 45.0%
TACTCTGCGTTAGGACAACA+GGG + chr3_2:84469751-84469770 Msa0432260:CDS 45.0%
! TTTTCTCTCTCTCTGGACTC+TGG + chr3_2:84469925-84469944 Msa0432260:intron 45.0%
TTTCTCTCTCTCTGGACTCT+GGG + chr3_2:84469926-84469945 Msa0432260:intron 45.0%
ACGGAGGTAGTAATAGGGAA+AGG - chr3_2:84470073-84470092 None:intergenic 45.0%
CCATTACTGCTTCCATTGCA+TGG - chr3_2:84470862-84470881 None:intergenic 45.0%
CCATGCAATGGAAGCAGTAA+TGG + chr3_2:84470859-84470878 Msa0432260:CDS 45.0%
! TGGAAGCAGTAATGGCTTGT+TGG + chr3_2:84470867-84470886 Msa0432260:CDS 45.0%
!! GGAAGCAGTAATGGCTTGTT+GGG + chr3_2:84470868-84470887 Msa0432260:CDS 45.0%
TTCGGTTCAGTATAGGCCAT+AGG + chr3_2:84471091-84471110 Msa0432260:intron 45.0%
TCGGTTCAGTATAGGCCATA+GGG + chr3_2:84471092-84471111 Msa0432260:intron 45.0%
TAGGCCATAGGGTCTCATAT+TGG + chr3_2:84471103-84471122 Msa0432260:intron 45.0%
AGGCCATAGGGTCTCATATT+GGG + chr3_2:84471104-84471123 Msa0432260:intron 45.0%
! TCTTAGAGCATCTCCAATGG+GGG + chr3_2:84471194-84471213 Msa0432260:intron 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG - chr3_2:84471222-84471241 None:intergenic 45.0%
CTCTCTCCAGAGTAACTAAC+GGG + chr3_2:84471315-84471334 Msa0432260:intron 45.0%
TGTCACGTGGGGTCTATTTA+AGG + chr3_2:84471582-84471601 Msa0432260:intron 45.0%
!! GCTTGTAAGAGCATCCACAA+TGG - chr3_2:84471627-84471646 None:intergenic 45.0%
TGTGTAACAGGAGTTTCACC+AGG + chr3_2:84472590-84472609 Msa0432260:intron 45.0%
GTGTAACAGGAGTTTCACCA+GGG + chr3_2:84472591-84472610 Msa0432260:intron 45.0%
TGTAACAGGAGTTTCACCAG+GGG + chr3_2:84472592-84472611 Msa0432260:intron 45.0%
CTGTTTGATGGAGGTTTGGA+TGG + chr3_2:84472674-84472693 Msa0432260:CDS 45.0%
CATGTCTTACACGTTCCATG+AGG - chr3_2:84472757-84472776 None:intergenic 45.0%
! ATTTTACGCAAGAGACGAGC+TGG + chr3_2:84473068-84473087 Msa0432260:CDS 45.0%
GGTGGCAATCACATTCAAAG+TGG + chr3_2:84473129-84473148 Msa0432260:CDS 45.0%
TGTTTGTGCCTTTCAGGAAG+AGG + chr3_2:84473631-84473650 Msa0432260:intron 45.0%
TGCCTTTCAGGAAGAGGATA+AGG + chr3_2:84473637-84473656 Msa0432260:intron 45.0%
TGCCTTATCCTCTTCCTGAA+AGG - chr3_2:84473642-84473661 None:intergenic 45.0%
TTCAGGAAGAGGATAAGGCA+AGG + chr3_2:84473642-84473661 Msa0432260:intron 45.0%
GCCACCATGATATAAGGGTT+TGG - chr3_2:84473926-84473945 None:intergenic 45.0%
CTGCTGCCACCATGATATAA+GGG - chr3_2:84473931-84473950 None:intergenic 45.0%
TCTGCTGCCACCATGATATA+AGG - chr3_2:84473932-84473951 None:intergenic 45.0%
!! CTTATTAATTAAAATAATTA+AGG + chr3_2:84470361-84470380 Msa0432260:intron 5.0%
!! AATAATTTATAATGATATAA+TGG + chr3_2:84471845-84471864 Msa0432260:intron 5.0%
!!! TTTATTTTTATTTTTTTGAA+AGG - chr3_2:84474182-84474201 None:intergenic 5.0%
!! AATGGTGGAGTGGGTTGTCT+TGG - chr3_2:84469276-84469295 None:intergenic 50.0%
GCAGTTTGGAAAGAGTGGTG+AGG - chr3_2:84469334-84469353 None:intergenic 50.0%
TGAGCCAGTTAGGTGCAGTT+TGG - chr3_2:84469348-84469367 None:intergenic 50.0%
TGACTTCGCTGTGGTTTCGA+TGG - chr3_2:84469504-84469523 None:intergenic 50.0%
GAAGTCATCGACGACGTTAC+CGG + chr3_2:84469517-84469536 Msa0432260:CDS 50.0%
TGGCAGAAAGCGAAACGCAA+AGG + chr3_2:84469595-84469614 Msa0432260:CDS 50.0%
GTTGCCAAGTACTCTGCGTT+AGG + chr3_2:84469742-84469761 Msa0432260:CDS 50.0%
GTACTCTGCGTTAGGACAAC+AGG + chr3_2:84469750-84469769 Msa0432260:CDS 50.0%
GATCAATTATACCGGGACGG+AGG - chr3_2:84470089-84470108 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr3_2:84470284-84470303 Msa0432260:intron 50.0%
CATGGACTCGGACATGTTGT+TGG - chr3_2:84470844-84470863 None:intergenic 50.0%
ACATGTCCGAGTCCATGCAA+TGG + chr3_2:84470847-84470866 Msa0432260:CDS 50.0%
CTGCTTCCATTGCATGGACT+CGG - chr3_2:84470856-84470875 None:intergenic 50.0%
! CTGCTGCCGCAGTATGTTTT+CGG + chr3_2:84471073-84471092 Msa0432260:intron 50.0%
! CTTAGAGCATCTCCAATGGG+GGG + chr3_2:84471195-84471214 Msa0432260:intron 50.0%
GTTAAGTAAGGACCCCCCAT+TGG - chr3_2:84471210-84471229 None:intergenic 50.0%
TGGGGGGTCCTTACTTAACA+AGG + chr3_2:84471211-84471230 Msa0432260:intron 50.0%
TCCAATGGAGGGTCCTTAAC+GGG - chr3_2:84471244-84471263 None:intergenic 50.0%
CTCCAATGGAGGGTCCTTAA+CGG - chr3_2:84471245-84471264 None:intergenic 50.0%
CAAAGGAGGAACATGGCTAC+AGG + chr3_2:84472180-84472199 Msa0432260:intron 50.0%
AGAGAATGAGAGGTCCCTCA+TGG + chr3_2:84472739-84472758 Msa0432260:CDS 50.0%
TGAAACAGGTACGGTCCTCA+TGG + chr3_2:84472792-84472811 Msa0432260:intron 50.0%
AGACGAGCTGGAAAACTTCC+TGG + chr3_2:84473080-84473099 Msa0432260:CDS 50.0%
! AGTACTGAGGTTGTGTCACC+AGG - chr3_2:84473101-84473120 None:intergenic 50.0%
GGAAGAGGATAAGGCAAGGT+TGG + chr3_2:84473646-84473665 Msa0432260:intron 50.0%
!! GCAAGGTTGGTGCAAGAAAC+CGG + chr3_2:84473659-84473678 Msa0432260:CDS 50.0%
!! CAAGGTTGGTGCAAGAAACC+GGG + chr3_2:84473660-84473679 Msa0432260:CDS 50.0%
ACTGAGACGAGGAAGCTTGA+AGG + chr3_2:84474019-84474038 Msa0432260:three_prime_UTR 50.0%
GAAAGAGTGGTGAGGATCGG+AGG - chr3_2:84469326-84469345 None:intergenic 55.0%
!! AGGGCGTTGTTGAGCCAGTT+AGG - chr3_2:84469358-84469377 None:intergenic 55.0%
! GGTGTCGAGGTTGCGAAGAA+GGG - chr3_2:84469377-84469396 None:intergenic 55.0%
! TGGTGTCGAGGTTGCGAAGA+AGG - chr3_2:84469378-84469397 None:intergenic 55.0%
! GTTGTTGTTGGTTGTGGCGG+TGG - chr3_2:84469410-84469429 None:intergenic 55.0%
! GGTGTCGAGGTTGAGGAAGT+TGG - chr3_2:84469437-84469456 None:intergenic 55.0%
TTGACCGGAGGATTGGGAAC+CGG - chr3_2:84469461-84469480 None:intergenic 55.0%
GTTCCCAATCCTCCGGTCAA+TGG + chr3_2:84469461-84469480 Msa0432260:CDS 55.0%
GAGCCATTGACCGGAGGATT+GGG - chr3_2:84469467-84469486 None:intergenic 55.0%
AGAGCCATTGACCGGAGGAT+TGG - chr3_2:84469468-84469487 None:intergenic 55.0%
GTTTCGATGGAGGACAGGAC+GGG - chr3_2:84469491-84469510 None:intergenic 55.0%
GGTTTCGATGGAGGACAGGA+CGG - chr3_2:84469492-84469511 None:intergenic 55.0%
CTGTGGTTTCGATGGAGGAC+AGG - chr3_2:84469496-84469515 None:intergenic 55.0%
CTTCGCTGTGGTTTCGATGG+AGG - chr3_2:84469501-84469520 None:intergenic 55.0%
GGTATGAAGGCCGAGGAAAG+CGG + chr3_2:84469544-84469563 Msa0432260:CDS 55.0%
TGTTGCCTCACCGCTTTCCT+CGG - chr3_2:84469557-84469576 None:intergenic 55.0%
CAGCAGAGGGAGTGATGAAC+TGG + chr3_2:84469575-84469594 Msa0432260:CDS 55.0%
GTGTTTGAGAATCGCCACGC+CGG + chr3_2:84469669-84469688 Msa0432260:CDS 55.0%
ATCCTGGGCAACTGGTCAAC+CGG - chr3_2:84469691-84469710 None:intergenic 55.0%
CCGGGACGGAGGTAGTAATA+GGG - chr3_2:84470078-84470097 None:intergenic 55.0%
CCCTATTACTACCTCCGTCC+CGG + chr3_2:84470075-84470094 Msa0432260:intron 55.0%
ACCGGGACGGAGGTAGTAAT+AGG - chr3_2:84470079-84470098 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr3_2:84470288-84470307 Msa0432260:intron 55.0%
ATGCGACTGCGACATCAACG+AGG - chr3_2:84470786-84470805 None:intergenic 55.0%
ACAAGGACCACTCCCCGTTA+AGG + chr3_2:84471228-84471247 Msa0432260:intron 55.0%
CCAATGGAGGGTCCTTAACG+GGG - chr3_2:84471243-84471262 None:intergenic 55.0%
CGTTAAGGACCCTCCATTGG+AGG + chr3_2:84471243-84471262 Msa0432260:intron 55.0%
GTGGGACCCGTTAGTTACTC+TGG - chr3_2:84471324-84471343 None:intergenic 55.0%
ACAGGAGTTTCACCAGGGGA+AGG + chr3_2:84472596-84472615 Msa0432260:intron 55.0%
! GTTTCACCAGGGGAAGGTAC+AGG + chr3_2:84472602-84472621 Msa0432260:CDS 55.0%
CGTTGAAGAGCAAGCGCAAG+AGG + chr3_2:84473762-84473781 Msa0432260:CDS 55.0%
GAGTGGTGAGGATCGGAGGT+TGG - chr3_2:84469322-84469341 None:intergenic 60.0%
!! TGGCGTTGACGTTGGTGTCG+AGG - chr3_2:84469390-84469409 None:intergenic 60.0%
TTCCTCAACCTCGACACCGC+CGG + chr3_2:84469439-84469458 Msa0432260:CDS 60.0%
AGGACGGGAGAGCCATTGAC+CGG - chr3_2:84469476-84469495 None:intergenic 60.0%
CGTCGTCGATGACTTCGCTG+TGG - chr3_2:84469513-84469532 None:intergenic 60.0%
!! CGTTACCGGCGCTGGTATGA+AGG + chr3_2:84469531-84469550 Msa0432260:CDS 60.0%
AAGCGGTGAGGCAACAGCAG+AGG + chr3_2:84469561-84469580 Msa0432260:CDS 60.0%
AGCGGTGAGGCAACAGCAGA+GGG + chr3_2:84469562-84469581 Msa0432260:CDS 60.0%
CTCTCTCTCTGGACTCTGGG+TGG + chr3_2:84469929-84469948 Msa0432260:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr3_2:84470287-84470306 Msa0432260:intron 60.0%
GCATAGTACTCCCTCCGTCC+CGG - chr3_2:84470301-84470320 None:intergenic 60.0%
CCCCGTTAAGGACCCTCCAT+TGG + chr3_2:84471240-84471259 Msa0432260:intron 60.0%
GTTGCTCCTGTACCTTCCCC+TGG - chr3_2:84472611-84472630 None:intergenic 60.0%
!! TGTGGCGGTGGCGTTGACGT+TGG - chr3_2:84469398-84469417 None:intergenic 65.0%
! AACCGGCGGTGTCGAGGTTG+AGG - chr3_2:84469444-84469463 None:intergenic 65.0%
! ATTGGGAACCGGCGGTGTCG+AGG - chr3_2:84469450-84469469 None:intergenic 65.0%
!! ACCGCCGGTTCCCAATCCTC+CGG + chr3_2:84469454-84469473 Msa0432260:CDS 65.0%
ACCGGAGGATTGGGAACCGG+CGG - chr3_2:84469458-84469477 None:intergenic 65.0%
ACGGGAGAGCCATTGACCGG+AGG - chr3_2:84469473-84469492 None:intergenic 65.0%
ATCGACGACGTTACCGGCGC+TGG + chr3_2:84469523-84469542 Msa0432260:CDS 65.0%
CTCGGCCTTCATACCAGCGC+CGG - chr3_2:84469539-84469558 None:intergenic 65.0%
GAAGGCCGAGGAAAGCGGTG+AGG + chr3_2:84469549-84469568 Msa0432260:CDS 65.0%
!! GAGCGTCGATCCTGGGCAAC+TGG - chr3_2:84469699-84469718 None:intergenic 65.0%
!! GCCAGCTGAGCGTCGATCCT+GGG - chr3_2:84469706-84469725 None:intergenic 65.0%
!! TGCCAGCTGAGCGTCGATCC+TGG - chr3_2:84469707-84469726 None:intergenic 65.0%
GGAGGGTCCTTAACGGGGAG+TGG - chr3_2:84471238-84471257 None:intergenic 65.0%
CAGCTGCAGCTGCAGCACCT+AGG + chr3_2:84474046-84474065 Msa0432260:three_prime_UTR 65.0%
!! CGGCGCTGGTATGAAGGCCG+AGG + chr3_2:84469537-84469556 Msa0432260:CDS 70.0%
GGGCAACTGGTCAACCGGCG+TGG - chr3_2:84469686-84469705 None:intergenic 70.0%
! CGCCGGTTGACCAGTTGCCC+AGG + chr3_2:84469686-84469705 Msa0432260:CDS 70.0%
GCCCAGGATCGACGCTCAGC+TGG + chr3_2:84469702-84469721 Msa0432260:CDS 70.0%
! GGTGCTGCAGCTGCAGCTGC+AGG - chr3_2:84474045-84474064 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84469039 84474421 84469039 ID=Msa0432260;Name=Msa0432260
chr3_2 mRNA 84469039 84474421 84469039 ID=Msa0432260-mRNA-1;Parent=Msa0432260;Name=Msa0432260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=220|1|1|1|1|1|5|520|421
chr3_2 exon 84469039 84469816 84469039 ID=Msa0432260-mRNA-1:exon:23860;Parent=Msa0432260-mRNA-1
chr3_2 exon 84470800 84470920 84470800 ID=Msa0432260-mRNA-1:exon:23861;Parent=Msa0432260-mRNA-1
chr3_2 exon 84472600 84472799 84472600 ID=Msa0432260-mRNA-1:exon:23862;Parent=Msa0432260-mRNA-1
chr3_2 exon 84473032 84473163 84473032 ID=Msa0432260-mRNA-1:exon:23863;Parent=Msa0432260-mRNA-1
chr3_2 exon 84473647 84474421 84473647 ID=Msa0432260-mRNA-1:exon:23864;Parent=Msa0432260-mRNA-1
chr3_2 five_prime_UTR 84469039 84469258 84469039 ID=Msa0432260-mRNA-1:five_prime_utr;Parent=Msa0432260-mRNA-1
chr3_2 CDS 84469259 84469816 84469259 ID=Msa0432260-mRNA-1:cds;Parent=Msa0432260-mRNA-1
chr3_2 CDS 84470800 84470920 84470800 ID=Msa0432260-mRNA-1:cds;Parent=Msa0432260-mRNA-1
chr3_2 CDS 84472600 84472799 84472600 ID=Msa0432260-mRNA-1:cds;Parent=Msa0432260-mRNA-1
chr3_2 CDS 84473032 84473163 84473032 ID=Msa0432260-mRNA-1:cds;Parent=Msa0432260-mRNA-1
chr3_2 CDS 84473647 84473901 84473647 ID=Msa0432260-mRNA-1:cds;Parent=Msa0432260-mRNA-1
chr3_2 three_prime_UTR 84473902 84474421 84473902 ID=Msa0432260-mRNA-1:three_prime_utr;Parent=Msa0432260-mRNA-1
Gene Sequence

>Msa0432260

ATGGCGTATCACAACCAAGACAACCCACTCCACCATTTCACAGAACAACAACAACAACAACCAACCTCCGATCCTCACCACTCTTTCCAAACTGCACCTAACTGGCTCAACAACGCCCTTCTTCGCAACCTCGACACCAACGTCAACGCCACCGCCACAACCAACAACAACAGTACCAACTTCCTCAACCTCGACACCGCCGGTTCCCAATCCTCCGGTCAATGGCTCTCCCGTCCTGTCCTCCATCGAAACCACAGCGAAGTCATCGACGACGTTACCGGCGCTGGTATGAAGGCCGAGGAAAGCGGTGAGGCAACAGCAGAGGGAGTGATGAACTGGCAGAAAGCGAAACGCAAAGGTGAAATAATGGCGCACCCGTTGTATGAACAGCTTCTATCAGCACACGTGTCGTGTTTGAGAATCGCCACGCCGGTTGACCAGTTGCCCAGGATCGACGCTCAGCTGGCAGAGTCACAGAATGTTGTTGCCAAGTACTCTGCGTTAGGACAACAGGGCATGCTTGATAACGATGATAATAAACAACTCGACCACTTCATGTCGCATTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTCCAACAACATGTCCGAGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAACAGTCCTTACAAAGTCTAACAGGAGTTTCACCAGGGGAAGGTACAGGAGCAACAATGTCTGAAGATGAAGATGAGCAAGTAGACAGTGATGTTAATCTGTTTGATGGAGGTTTGGATGGTTCAGATAATAGTATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAGTTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGAAAACTTCCTGGTGACACAACCTCAGTACTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTATCCTACTGAAGAGGATAAGGCAAGGTTGGTGCAAGAAACCGGGTTGCAATTGAAACAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGCGTTGAAGAGCAAGCGCAAGAGGTATTTCTATATTAAAAAAATAGTCCTTTTCATAATCTTAAATTTGCATGAACTCTGCACCGATCTTGAATTAGAAATAAGTAATGCAGGTGATAAAAGTGACGGTCGTTACATGTAA

Protein sequence

>Msa0432260

MAYHNQDNPLHHFTEQQQQQPTSDPHHSFQTAPNWLNNALLRNLDTNVNATATTNNNSTNFLNLDTAGSQSSGQWLSRPVLHRNHSEVIDDVTGAGMKAEESGEATAEGVMNWQKAKRKGEIMAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLAESQNVVAKYSALGQQGMLDNDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGLDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNALKSKRKRYFYIKKIVLFIILNLHELCTDLELEISNAGDKSDGRYM*