Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465820 | XP_003602086.1 | 97.704 | 479 | 9 | 1 | 1 | 479 | 1 | 477 | 0.0 | 962 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465820 | sp|Q9SZX3|ASSY_ARATH | 75.877 | 456 | 96 | 3 | 36 | 477 | 37 | 492 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465820 | G7J524 | 97.704 | 479 | 9 | 1 | 1 | 479 | 1 | 477 | 0.0 | 962 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0235290 | Msa0465820 | 0.822856 | 1.893395e-53 | -8.615850e-47 |
| Msa0372300 | Msa0465820 | 0.811790 | 5.869319e-51 | -8.615850e-47 |
| Msa0418450 | Msa0465820 | 0.944262 | 2.693551e-103 | -8.615850e-47 |
| Msa0420610 | Msa0465820 | 0.807016 | 6.210474e-50 | -8.615850e-47 |
| Msa0465820 | Msa0512630 | 0.813281 | 2.770549e-51 | -8.615850e-47 |
| Msa0465820 | Msa0596840 | 0.801038 | 1.086976e-48 | -8.615850e-47 |
| Msa0465820 | Msa0599420 | 0.808940 | 2.419388e-50 | -8.615850e-47 |
| Msa0465820 | Msa0657720 | 0.805402 | 1.358399e-49 | -8.615850e-47 |
| Msa0465820 | Msa1238660 | 0.809281 | 2.044962e-50 | -8.615850e-47 |
| Msa0465820 | Msa1319560 | 0.813372 | 2.646775e-51 | -8.615850e-47 |
| Msa0465820 | Msa1341840 | 0.818432 | 1.966606e-52 | -8.615850e-47 |
| Msa0465820 | Msa1421850 | 0.938481 | 6.262462e-99 | -8.615850e-47 |
| Msa0465820 | Msa1461370 | 0.803295 | 3.731698e-49 | -8.615850e-47 |
| Msa0313900 | Msa0465820 | 0.808993 | 2.356776e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465820 | MtrunA17_Chr3g0116191 | 97.704 | 479 | 9 | 1 | 1 | 479 | 1 | 477 | 0.0 | 962 |
| Msa0465820 | MtrunA17_Chr5g0418151 | 78.631 | 482 | 98 | 4 | 1 | 479 | 1 | 480 | 0.0 | 801 |
| Msa0465820 | MtrunA17_Chr4g0057681 | 77.755 | 481 | 102 | 3 | 1 | 479 | 1 | 478 | 0.0 | 794 |
| Msa0465820 | MtrunA17_Chr3g0116211 | 92.105 | 38 | 3 | 0 | 228 | 265 | 5 | 42 | 1.75e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465820 | AT4G24830.1 | 75.877 | 456 | 96 | 3 | 36 | 477 | 37 | 492 | 0.0 | 738 |
| Msa0465820 | AT4G24830.2 | 68.421 | 456 | 86 | 4 | 36 | 477 | 37 | 448 | 0.0 | 643 |
Find 134 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGTTTATAAAGCTTTA+TGG | 0.195100 | 3_3:+66299701 | Msa0465820:CDS |
| GAGACTTTCTCCAGGAAATT+TGG | 0.219965 | 3_3:+66299265 | Msa0465820:CDS |
| CATTTAAATGTTGCTTTGTT+TGG | 0.232185 | 3_3:+66299760 | Msa0465820:exon |
| GGCTCGTTTGGAGCATCCTC+TGG | 0.264292 | 3_3:-66298886 | None:intergenic |
| GCAGCACCAAAACTTCTTCT+TGG | 0.269528 | 3_3:-66296652 | None:intergenic |
| CTCTTCCCGTTCACTGATAC+TGG | 0.283687 | 3_3:-66299245 | None:intergenic |
| TAAATTGAATAAGGTTGTTC+TGG | 0.285220 | 3_3:+66296986 | Msa0465820:CDS |
| TCCAGCAAATGAACCTAAAA+AGG | 0.289546 | 3_3:+66298840 | Msa0465820:CDS |
| AATTGTACCTTTGCAATTAC+AGG | 0.294100 | 3_3:-66297526 | None:intergenic |
| TATAATACCTCTTGCATGTT+TGG | 0.299208 | 3_3:-66296237 | None:intergenic |
| TCCAAACAACCATAATAAAA+AGG | 0.306302 | 3_3:+66296115 | Msa0465820:five_prime_UTR |
| AAGAAGGTTGCTGGACTAAA+AGG | 0.307828 | 3_3:+66296963 | Msa0465820:CDS |
| GTTCCTGTCCCTACTATATA+TGG | 0.308253 | 3_3:-66298617 | None:intergenic |
| AGAGTCCTTATAGTTTATAT+AGG | 0.334609 | 3_3:+66299627 | Msa0465820:CDS |
| CATGCTTACTCTGGCTCGTT+TGG | 0.336131 | 3_3:-66298898 | None:intergenic |
| AGCTCAGCAACCAAATTTCC+TGG | 0.338037 | 3_3:-66299275 | None:intergenic |
| GACAATGAAGGGTGATGTTT+TGG | 0.341023 | 3_3:+66298813 | Msa0465820:intron |
| CTTGTTCTTGACAATGTTTG+TGG | 0.349316 | 3_3:+66299803 | Msa0465820:three_prime_UTR |
| TCTTCCCTATATAAACTATA+AGG | 0.355120 | 3_3:-66299632 | None:intergenic |
| ATTTGAAGGAGGAATTTGTT+AGG | 0.362363 | 3_3:+66297428 | Msa0465820:CDS |
| TGGAGGGAGTGGGATATTAC+AGG | 0.373658 | 3_3:+66298532 | Msa0465820:CDS |
| GTAGGAGCAATAGCAATAAC+TGG | 0.378943 | 3_3:-66296215 | None:intergenic |
| GTTTGCTTCACAGCTGATCT+AGG | 0.379181 | 3_3:+66297169 | Msa0465820:CDS |
| TCTGAGACCAAGAAGGTTGC+TGG | 0.380668 | 3_3:+66296954 | Msa0465820:CDS |
| ACTAAAAGGTAAATTGAATA+AGG | 0.382723 | 3_3:+66296977 | Msa0465820:CDS |
| GTGAGTTTGAAACTGTATAA+AGG | 0.393785 | 3_3:+66299581 | Msa0465820:CDS |
| TTGAGTCCAAGAAGAAGTTT+TGG | 0.398524 | 3_3:+66296646 | Msa0465820:CDS |
| GAGTCCTTATAGTTTATATA+GGG | 0.398664 | 3_3:+66299628 | Msa0465820:CDS |
| GGCACCTCTTTGAATGATAA+AGG | 0.401550 | 3_3:-66296464 | None:intergenic |
| CGAATCGATGGATTCATTCA+TGG | 0.403729 | 3_3:+66299529 | Msa0465820:CDS |
| TTATATTTCAGAGAGAACTA+TGG | 0.433222 | 3_3:+66297136 | Msa0465820:intron |
| CTTCACTGCAGCAAGAGACT+TGG | 0.434941 | 3_3:+66299406 | Msa0465820:CDS |
| GTTGCTGAGCTGAATGAGAT+AGG | 0.447227 | 3_3:+66299287 | Msa0465820:CDS |
| TGGAGCCACAACATTTAACT+TGG | 0.448067 | 3_3:-66298509 | None:intergenic |
| AAGGCGTTGCCTGGCAGAAC+CGG | 0.451413 | 3_3:-66296445 | None:intergenic |
| GCTGTCTCCCATGGTTGTAC+AGG | 0.452794 | 3_3:+66298348 | Msa0465820:CDS |
| GTAGAGATTGGATTTGAGTC+AGG | 0.455723 | 3_3:+66299218 | Msa0465820:CDS |
| AAGATCTCACAGACTACAAC+AGG | 0.459666 | 3_3:+66299554 | Msa0465820:CDS |
| TTTGAAGGAGGAATTTGTTA+GGG | 0.460026 | 3_3:+66297429 | Msa0465820:CDS |
| TTGGTTGAAGACCGCATTGT+AGG | 0.463237 | 3_3:+66299338 | Msa0465820:CDS |
| GGCAGAACCGGTGATGCAGC+AGG | 0.464683 | 3_3:-66296433 | None:intergenic |
| ATCATGGCTCTGATCCTCAT+TGG | 0.465937 | 3_3:-66299728 | None:intergenic |
| TGTCACAGATATGTAGAGAT+TGG | 0.471518 | 3_3:+66299206 | Msa0465820:intron |
| AGCATCAGCTCCAACTTCAT+TGG | 0.473132 | 3_3:-66298328 | None:intergenic |
| ATAGGTGGAAGGCATGGAAT+AGG | 0.474520 | 3_3:+66299305 | Msa0465820:CDS |
| TTAAATGCCTTGTTCCATCA+TGG | 0.476647 | 3_3:-66299744 | None:intergenic |
| GCATTCCAGTATCAGTGAAC+GGG | 0.482377 | 3_3:+66299240 | Msa0465820:CDS |
| GCTGCATCACCGGTTCTGCC+AGG | 0.483785 | 3_3:+66296436 | Msa0465820:CDS |
| TCCTTTCCCTGTACAACCAT+GGG | 0.485988 | 3_3:-66298355 | None:intergenic |
| TTGTGGCTCCATGGAGGGAG+TGG | 0.488608 | 3_3:+66298521 | Msa0465820:CDS |
| ATAGTAGGGACAGGAACCTT+TGG | 0.489226 | 3_3:+66298623 | Msa0465820:CDS |
| AAAGGTAGTGCTTCTGTGAC+GGG | 0.492018 | 3_3:+66299599 | Msa0465820:CDS |
| TACAGGGAAAGGAAATGATC+AGG | 0.493714 | 3_3:+66298365 | Msa0465820:CDS |
| TGATCCACTTCGCGAATCGA+TGG | 0.495410 | 3_3:+66299517 | Msa0465820:CDS |
| ACACATCGGTTGTTGTCCCC+TGG | 0.498273 | 3_3:+66297027 | Msa0465820:CDS |
| AATAAATGATGTGAAGTGAT+TGG | 0.502780 | 3_3:+66299845 | Msa0465820:three_prime_UTR |
| TGAATGATAAAGGCGTTGCC+TGG | 0.508431 | 3_3:-66296454 | None:intergenic |
| TAGAGCACCTGCTGCATCAC+CGG | 0.510676 | 3_3:+66296426 | Msa0465820:intron |
| AGTTAAATGTTGTGGCTCCA+TGG | 0.510694 | 3_3:+66298512 | Msa0465820:CDS |
| GAATCCATCGATTCGCGAAG+TGG | 0.511909 | 3_3:-66299521 | None:intergenic |
| TATGCAGAGTTAGTGTATGC+TGG | 0.511989 | 3_3:+66299485 | Msa0465820:CDS |
| AGTTAGTGTATGCTGGAAGA+TGG | 0.513144 | 3_3:+66299492 | Msa0465820:CDS |
| GTTAGTCGTGAAGGATTTGA+AGG | 0.514713 | 3_3:+66297414 | Msa0465820:CDS |
| AATATGCATATACCTCAGCC+AGG | 0.516620 | 3_3:-66297045 | None:intergenic |
| GCTCGTTTGGAGCATCCTCT+GGG | 0.518543 | 3_3:-66298885 | None:intergenic |
| TACAATCATGCTGATGCTGT+TGG | 0.521896 | 3_3:+66299683 | Msa0465820:CDS |
| AGAAACAGTAGCATCTCAAG+AGG | 0.521954 | 3_3:+66296091 | Msa0465820:five_prime_UTR |
| TGGAATAGGCCGTGTCGACT+TGG | 0.524552 | 3_3:+66299319 | Msa0465820:CDS |
| ATTGGAAGGTTTAGAAGAGA+AGG | 0.525282 | 3_3:+66297369 | Msa0465820:CDS |
| CATAAATTGCACCGGCACGC+AGG | 0.525485 | 3_3:-66297468 | None:intergenic |
| GTTGTTCTGGCTTATAGTGG+TGG | 0.525983 | 3_3:+66296999 | Msa0465820:CDS |
| GTGGATATTGCCAATGAAGT+TGG | 0.528679 | 3_3:+66298318 | Msa0465820:CDS |
| ATTGCACCGGCACGCAGGCA+AGG | 0.529669 | 3_3:-66297463 | None:intergenic |
| ATACCTCTTGCATGTTTGGT+AGG | 0.530313 | 3_3:-66296233 | None:intergenic |
| AAGGTTGTTCTGGCTTATAG+TGG | 0.530508 | 3_3:+66296996 | Msa0465820:CDS |
| GTAATATCCCACTCCCTCCA+TGG | 0.530801 | 3_3:-66298529 | None:intergenic |
| GGAGCTGATGCTGTCTCCCA+TGG | 0.531705 | 3_3:+66298339 | Msa0465820:CDS |
| GACTAACTGAGAAGCTCCGC+TGG | 0.532858 | 3_3:-66297398 | None:intergenic |
| TATGAGAGGAAGTATTTGCT+CGG | 0.533964 | 3_3:+66297487 | Msa0465820:CDS |
| ACAATCATGCTGATGCTGTT+GGG | 0.534657 | 3_3:+66299684 | Msa0465820:CDS |
| GTATTCCCTTGCCTGCGTGC+CGG | 0.534840 | 3_3:+66297457 | Msa0465820:CDS |
| CGGTTGTTGTCCCCTGGCTG+AGG | 0.535155 | 3_3:+66297033 | Msa0465820:CDS |
| TTCCTTTCCCTGTACAACCA+TGG | 0.535229 | 3_3:-66298356 | None:intergenic |
| TCCCATGGTTGTACAGGGAA+AGG | 0.539361 | 3_3:+66298354 | Msa0465820:CDS |
| AATCCATATATAGTAGGGAC+AGG | 0.540052 | 3_3:+66298614 | Msa0465820:CDS |
| AGCTTCTCAGTTAGTCGTGA+AGG | 0.542860 | 3_3:+66297405 | Msa0465820:CDS |
| CGAGGAGTTTACGAAACTCC+AGG | 0.546528 | 3_3:+66299371 | Msa0465820:CDS |
| AGTCGTGAAGGATTTGAAGG+AGG | 0.547776 | 3_3:+66297417 | Msa0465820:CDS |
| TAAAGGTAGTGCTTCTGTGA+CGG | 0.549158 | 3_3:+66299598 | Msa0465820:CDS |
| TTGCACCGGCACGCAGGCAA+GGG | 0.549264 | 3_3:-66297462 | None:intergenic |
| GATATTTCTTCATTTGAGAG+TGG | 0.551295 | 3_3:+66299653 | Msa0465820:CDS |
| GTGAAGAGAATGGTGCCACC+TGG | 0.566636 | 3_3:-66299389 | None:intergenic |
| GGCATTCCAGTATCAGTGAA+CGG | 0.567431 | 3_3:+66299239 | Msa0465820:CDS |
| CTGTCTCCCATGGTTGTACA+GGG | 0.569616 | 3_3:+66298349 | Msa0465820:CDS |
| AATGAGGATCAGAGCCATGA+TGG | 0.575339 | 3_3:+66299730 | Msa0465820:CDS |
| CTGGAGTTTCGTAAACTCCT+CGG | 0.575914 | 3_3:-66299370 | None:intergenic |
| GAATCCCAAGTTAAATGTTG+TGG | 0.576942 | 3_3:+66298504 | Msa0465820:CDS |
| AGCTTTATGGTCTTCCAATG+AGG | 0.578462 | 3_3:+66299714 | Msa0465820:CDS |
| CCTCATGAGTTATGTGCCAA+AGG | 0.582533 | 3_3:-66298639 | None:intergenic |
| AACGGGAAGAGACTTTCTCC+AGG | 0.583209 | 3_3:+66299257 | Msa0465820:CDS |
| GGAGCCACAACATTTAACTT+GGG | 0.583839 | 3_3:-66298508 | None:intergenic |
| TGCTAAGAAGCATAACGTAC+CGG | 0.586709 | 3_3:+66298576 | Msa0465820:CDS |
| AAATGTTGTGGCTCCATGGA+GGG | 0.588551 | 3_3:+66298516 | Msa0465820:CDS |
| CTTCCTCTCATAAATTGCAC+CGG | 0.594909 | 3_3:-66297476 | None:intergenic |
| AGCTCGCCCTGTAATTGCAA+AGG | 0.595419 | 3_3:+66297519 | Msa0465820:CDS |
| ATTGTACCTTTGCAATTACA+GGG | 0.595573 | 3_3:-66297525 | None:intergenic |
| AATGAGATAGGTGGAAGGCA+TGG | 0.596201 | 3_3:+66299299 | Msa0465820:CDS |
| AGAGATTTCTGAGACCAAGA+AGG | 0.598640 | 3_3:+66296947 | Msa0465820:CDS |
| TCTTGCTGCAGTGAAGAGAA+TGG | 0.602817 | 3_3:-66299399 | None:intergenic |
| ATCAGAGCCATGATGGAACA+AGG | 0.603309 | 3_3:+66299737 | Msa0465820:CDS |
| TAGGAGCAATAGCAATAACT+GGG | 0.610995 | 3_3:-66296214 | None:intergenic |
| ACTGACTTGACAGGCTATGG+TGG | 0.612505 | 3_3:+66298299 | Msa0465820:intron |
| AACGCCTTTATCATTCAAAG+AGG | 0.614121 | 3_3:+66296460 | Msa0465820:CDS |
| GTAGTGCTTCTGTGACGGGT+CGG | 0.618058 | 3_3:+66299603 | Msa0465820:CDS |
| TGTGGCTCCATGGAGGGAGT+GGG | 0.626032 | 3_3:+66298522 | Msa0465820:CDS |
| GAAACAGTAGCATCTCAAGA+GGG | 0.631653 | 3_3:+66296092 | Msa0465820:five_prime_UTR |
| GCTCCTACCAAACATGCAAG+AGG | 0.634689 | 3_3:+66296230 | Msa0465820:CDS |
| GGTGCTGCAAGTAAACCTCA+AGG | 0.648225 | 3_3:+66296667 | Msa0465820:CDS |
| AGCTGAATGAGATAGGTGGA+AGG | 0.657500 | 3_3:+66299294 | Msa0465820:CDS |
| ATATGCATATACCTCAGCCA+GGG | 0.663707 | 3_3:-66297044 | None:intergenic |
| GAAGAGAAGGCAAAAGCCAG+CGG | 0.667966 | 3_3:+66297382 | Msa0465820:CDS |
| ATTGTAGGCATGAAGAGCCG+AGG | 0.671284 | 3_3:+66299353 | Msa0465820:CDS |
| TAGTGGTGGCTTAGACACAT+CGG | 0.675543 | 3_3:+66297013 | Msa0465820:CDS |
| GGTCTTCAACCAAGTCGACA+CGG | 0.676556 | 3_3:-66299328 | None:intergenic |
| CCTTTGGCACATAACTCATG+AGG | 0.680674 | 3_3:+66298639 | Msa0465820:CDS |
| GTGCCGGTGCAATTTATGAG+AGG | 0.682687 | 3_3:+66297473 | Msa0465820:CDS |
| TAAATGTTGTGGCTCCATGG+AGG | 0.686850 | 3_3:+66298515 | Msa0465820:CDS |
| GGAGGGAGTGGGATATTACA+GGG | 0.688013 | 3_3:+66298533 | Msa0465820:CDS |
| GGCTCTTCATGCCTACAATG+CGG | 0.703012 | 3_3:-66299349 | None:intergenic |
| TATGCATATACCTCAGCCAG+GGG | 0.712359 | 3_3:-66297043 | None:intergenic |
| GCTGAGCTGAATGAGATAGG+TGG | 0.717992 | 3_3:+66299290 | Msa0465820:CDS |
| AGGAGCAATAGCAATAACTG+GGG | 0.751488 | 3_3:-66296213 | None:intergenic |
| CATGTTGACTGCAGACCCAG+AGG | 0.770433 | 3_3:+66298870 | Msa0465820:CDS |
| GGAGTTTACGAAACTCCAGG+TGG | 0.771741 | 3_3:+66299374 | Msa0465820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATAGATATCAAAA+TGG | - | chr3_3:66298011-66298030 | None:intergenic | 10.0% |
| !! | ATGTATTATTAATTACTATT+AGG | + | chr3_3:66298389-66298408 | Msa0465820:intron | 10.0% |
| !! | TGTTATATTTATAATTGTTA+AGG | + | chr3_3:66298453-66298472 | Msa0465820:intron | 10.0% |
| !!! | AATGTTTTAATTTGTATTAA+TGG | - | chr3_3:66299134-66299153 | None:intergenic | 10.0% |
| !! | ATATTCAGAAAAAACTAATA+TGG | + | chr3_3:66296160-66296179 | Msa0465820:exon | 15.0% |
| !! | AAATACTAAAATTCAAACAA+TGG | - | chr3_3:66296531-66296550 | None:intergenic | 15.0% |
| !! | TATTTATAATTGTTAAGGTT+CGG | + | chr3_3:66298458-66298477 | Msa0465820:intron | 15.0% |
| !!! | CAATTTTCTCAAATGATTAT+TGG | - | chr3_3:66296780-66296799 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTAATGTCTCTAA+CGG | + | chr3_3:66296875-66296894 | Msa0465820:intron | 20.0% |
| !! | ACTAAAAGGTAAATTGAATA+AGG | + | chr3_3:66296977-66296996 | Msa0465820:CDS | 20.0% |
| !! | TAAATTGTGAGAATATGAAA+AGG | - | chr3_3:66297084-66297103 | None:intergenic | 20.0% |
| !! | AGACTAATTGTCATATTTAT+GGG | - | chr3_3:66297214-66297233 | None:intergenic | 20.0% |
| !!! | TAACAAATGCAAATTTTCTT+AGG | + | chr3_3:66297336-66297355 | Msa0465820:intron | 20.0% |
| !!! | AACAAATGCAAATTTTCTTA+GGG | + | chr3_3:66297337-66297356 | Msa0465820:intron | 20.0% |
| !!! | TTTTATAGATATCAAAATGG+AGG | - | chr3_3:66298008-66298027 | None:intergenic | 20.0% |
| !! | GATTCTTGTAAAATATGAAA+AGG | - | chr3_3:66298140-66298159 | None:intergenic | 20.0% |
| !! | GAAAATAGAAATGTGAAATT+TGG | - | chr3_3:66298194-66298213 | None:intergenic | 20.0% |
| !! | AAATAATTGGCATGATTAAT+TGG | - | chr3_3:66298423-66298442 | None:intergenic | 20.0% |
| !! | CAAAAAATCCATATATAGTA+GGG | + | chr3_3:66298609-66298628 | Msa0465820:CDS | 20.0% |
| !!! | TATAGTCATGTTTTTTAAAG+AGG | + | chr3_3:66298938-66298957 | Msa0465820:intron | 20.0% |
| !!! | TTAATTTGTATTAATGGTTG+TGG | - | chr3_3:66299128-66299147 | None:intergenic | 20.0% |
| ! | TCCAAACAACCATAATAAAA+AGG | + | chr3_3:66296115-66296134 | Msa0465820:five_prime_UTR | 25.0% |
| !! | TCCTTTTTATTATGGTTGTT+TGG | - | chr3_3:66296119-66296138 | None:intergenic | 25.0% |
| ! | AAACAACCATAATAAAAAGG+AGG | + | chr3_3:66296118-66296137 | Msa0465820:five_prime_UTR | 25.0% |
| ! | AAAAAATCATAGATAGAGCT+AGG | - | chr3_3:66296278-66296297 | None:intergenic | 25.0% |
| ! | AAACATAGTAAACAACAGTT+AGG | - | chr3_3:66296398-66296417 | None:intergenic | 25.0% |
| !!! | GCATGTTTGTGTATTTTTAA+GGG | - | chr3_3:66296488-66296507 | None:intergenic | 25.0% |
| !!! | TGCATGTTTGTGTATTTTTA+AGG | - | chr3_3:66296489-66296508 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTTTTGCATGTTT+TGG | + | chr3_3:66296603-66296622 | Msa0465820:intron | 25.0% |
| ! | TAAATTGAATAAGGTTGTTC+TGG | + | chr3_3:66296986-66297005 | Msa0465820:CDS | 25.0% |
| ! | TTATATTTCAGAGAGAACTA+TGG | + | chr3_3:66297136-66297155 | Msa0465820:intron | 25.0% |
| ! | GAGACTAATTGTCATATTTA+TGG | - | chr3_3:66297215-66297234 | None:intergenic | 25.0% |
| !! | ACAAATGCAAATTTTCTTAG+GGG | + | chr3_3:66297338-66297357 | Msa0465820:intron | 25.0% |
| ! | AAAACAATCACAAAGCATAA+GGG | - | chr3_3:66297600-66297619 | None:intergenic | 25.0% |
| ! | AAAAACAATCACAAAGCATA+AGG | - | chr3_3:66297601-66297620 | None:intergenic | 25.0% |
| !! | CTCTACAAAATTGACTTATA+AGG | - | chr3_3:66297811-66297830 | None:intergenic | 25.0% |
| ! | CTCATAATTAGTTCATTCTA+AGG | + | chr3_3:66298050-66298069 | Msa0465820:intron | 25.0% |
| !! | ATATGAAAAGGTATACTAAG+AGG | - | chr3_3:66298128-66298147 | None:intergenic | 25.0% |
| ! | ACACGTTAGAAGAAAATAAT+TGG | - | chr3_3:66298436-66298455 | None:intergenic | 25.0% |
| !!! | TATATGGATTTTTTGGTTAC+AGG | - | chr3_3:66298604-66298623 | None:intergenic | 25.0% |
| !!! | CCTACTATATATGGATTTTT+TGG | - | chr3_3:66298611-66298630 | None:intergenic | 25.0% |
| ! | CCAAAAAATCCATATATAGT+AGG | + | chr3_3:66298608-66298627 | Msa0465820:CDS | 25.0% |
| ! | CAAATCATAAAGCATAGTAA+TGG | - | chr3_3:66298714-66298733 | None:intergenic | 25.0% |
| !! | TTTGAACGTGATTTTAAATG+AGG | - | chr3_3:66298757-66298776 | None:intergenic | 25.0% |
| !! | AACATGTACATATCCTTTTT+AGG | - | chr3_3:66298856-66298875 | None:intergenic | 25.0% |
| ! | ATATTTGAATGCGATTATCA+AGG | + | chr3_3:66298996-66299015 | Msa0465820:intron | 25.0% |
| ! | TTTGATATCATTAAGAAGCA+CGG | - | chr3_3:66299092-66299111 | None:intergenic | 25.0% |
| ! | AGAGTCCTTATAGTTTATAT+AGG | + | chr3_3:66299627-66299646 | Msa0465820:CDS | 25.0% |
| ! | GAGTCCTTATAGTTTATATA+GGG | + | chr3_3:66299628-66299647 | Msa0465820:CDS | 25.0% |
| ! | TCTTCCCTATATAAACTATA+AGG | - | chr3_3:66299635-66299654 | None:intergenic | 25.0% |
| !!! | CATTTAAATGTTGCTTTGTT+TGG | + | chr3_3:66299760-66299779 | Msa0465820:exon | 25.0% |
| !! | TTGTGGAACTTTTATTATTG+TGG | + | chr3_3:66299820-66299839 | Msa0465820:three_prime_UTR | 25.0% |
| !! | TGTGGAACTTTTATTATTGT+GGG | + | chr3_3:66299821-66299840 | Msa0465820:three_prime_UTR | 25.0% |
| ! | AATAAATGATGTGAAGTGAT+TGG | + | chr3_3:66299845-66299864 | Msa0465820:three_prime_UTR | 25.0% |
| TATAATACCTCTTGCATGTT+TGG | - | chr3_3:66296240-66296259 | None:intergenic | 30.0% | |
| ATAGTAAACAACAGTTAGGA+GGG | - | chr3_3:66296394-66296413 | None:intergenic | 30.0% | |
| !!! | TGGATGTTTTATTTGTCTGA+TGG | + | chr3_3:66296581-66296600 | Msa0465820:intron | 30.0% |
| AACATAACACTGAACATATC+TGG | - | chr3_3:66296840-66296859 | None:intergenic | 30.0% | |
| ! | CACTTTAGAAACTGAATTGA+CGG | + | chr3_3:66297281-66297300 | Msa0465820:intron | 30.0% |
| TACTTTAATTGCTGCATGTT+TGG | + | chr3_3:66297312-66297331 | Msa0465820:intron | 30.0% | |
| ! | CAAATGCAAATTTTCTTAGG+GGG | + | chr3_3:66297339-66297358 | Msa0465820:intron | 30.0% |
| ! | ATTTGAAGGAGGAATTTGTT+AGG | + | chr3_3:66297428-66297447 | Msa0465820:CDS | 30.0% |
| !! | TTTGAAGGAGGAATTTGTTA+GGG | + | chr3_3:66297429-66297448 | Msa0465820:CDS | 30.0% |
| ATTGTACCTTTGCAATTACA+GGG | - | chr3_3:66297528-66297547 | None:intergenic | 30.0% | |
| AATTGTACCTTTGCAATTAC+AGG | - | chr3_3:66297529-66297548 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCAGTAGCTGAGT+CGG | + | chr3_3:66297648-66297667 | Msa0465820:intron | 30.0% |
| ATGCAATACCAATAAAGATC+CGG | - | chr3_3:66298251-66298270 | None:intergenic | 30.0% | |
| !! | TGCTTTATGATTTGTTGTCA+CGG | + | chr3_3:66298720-66298739 | Msa0465820:intron | 30.0% |
| TTTCCAATATGTGACAATGA+AGG | + | chr3_3:66298801-66298820 | Msa0465820:intron | 30.0% | |
| TTCCAATATGTGACAATGAA+GGG | + | chr3_3:66298802-66298821 | Msa0465820:intron | 30.0% | |
| ! | GTTTAGTTTCACTACTTACT+TGG | + | chr3_3:66299177-66299196 | Msa0465820:intron | 30.0% |
| ! | GTGAGTTTGAAACTGTATAA+AGG | + | chr3_3:66299581-66299600 | Msa0465820:CDS | 30.0% |
| GATATTTCTTCATTTGAGAG+TGG | + | chr3_3:66299653-66299672 | Msa0465820:CDS | 30.0% | |
| GTTGGGTTTATAAAGCTTTA+TGG | + | chr3_3:66299701-66299720 | Msa0465820:CDS | 30.0% | |
| ! | CACTCACCTCCTTTTTATTA+TGG | - | chr3_3:66296127-66296146 | None:intergenic | 35.0% |
| TAGGAGCAATAGCAATAACT+GGG | - | chr3_3:66296217-66296236 | None:intergenic | 35.0% | |
| CATAGTAAACAACAGTTAGG+AGG | - | chr3_3:66296395-66296414 | None:intergenic | 35.0% | |
| AACGCCTTTATCATTCAAAG+AGG | + | chr3_3:66296460-66296479 | Msa0465820:CDS | 35.0% | |
| AATACACAAACATGCATGCA+TGG | + | chr3_3:66296493-66296512 | Msa0465820:intron | 35.0% | |
| !! | TGATATGCATGTGCTTTTTG+TGG | + | chr3_3:66296561-66296580 | Msa0465820:intron | 35.0% |
| ! | TTGAGTCCAAGAAGAAGTTT+TGG | + | chr3_3:66296646-66296665 | Msa0465820:CDS | 35.0% |
| TGGGCAGATTATAACATACT+TGG | - | chr3_3:66297195-66297214 | None:intergenic | 35.0% | |
| ATTGGAAGGTTTAGAAGAGA+AGG | + | chr3_3:66297369-66297388 | Msa0465820:CDS | 35.0% | |
| !! | TATGAGAGGAAGTATTTGCT+CGG | + | chr3_3:66297487-66297506 | Msa0465820:CDS | 35.0% |
| CTGCAATATGAGACTCTTAA+CGG | - | chr3_3:66297748-66297767 | None:intergenic | 35.0% | |
| AGAGTTATTGTTCATGTTCC+AGG | + | chr3_3:66297827-66297846 | Msa0465820:intron | 35.0% | |
| CTAATACCATCTTAGCAGAT+GGG | - | chr3_3:66297864-66297883 | None:intergenic | 35.0% | |
| ACTAATACCATCTTAGCAGA+TGG | - | chr3_3:66297865-66297884 | None:intergenic | 35.0% | |
| GTATTTACAAGACCTGTTGT+TGG | + | chr3_3:66297885-66297904 | Msa0465820:intron | 35.0% | |
| CACTGAAGTGTGAACTATTT+GGG | - | chr3_3:66297915-66297934 | None:intergenic | 35.0% | |
| TCACTGAAGTGTGAACTATT+TGG | - | chr3_3:66297916-66297935 | None:intergenic | 35.0% | |
| GAGGTTCTTAGAATTTGAGT+TGG | - | chr3_3:66297989-66298008 | None:intergenic | 35.0% | |
| TTTAGATCCTACCTTTCCTT+AGG | + | chr3_3:66298084-66298103 | Msa0465820:intron | 35.0% | |
| GTATACTAAGAGGTAACACA+TGG | - | chr3_3:66298118-66298137 | None:intergenic | 35.0% | |
| GAATCCCAAGTTAAATGTTG+TGG | + | chr3_3:66298504-66298523 | Msa0465820:CDS | 35.0% | |
| !!! | GATTTTTTGGTTACAGGAAC+CGG | - | chr3_3:66298598-66298617 | None:intergenic | 35.0% |
| AATCCATATATAGTAGGGAC+AGG | + | chr3_3:66298614-66298633 | Msa0465820:CDS | 35.0% | |
| TCCAGCAAATGAACCTAAAA+AGG | + | chr3_3:66298840-66298859 | Msa0465820:CDS | 35.0% | |
| !!! | TCCTTTTTAGGTTCATTTGC+TGG | - | chr3_3:66298844-66298863 | None:intergenic | 35.0% |
| CATTAACAACATGCTTACTC+TGG | - | chr3_3:66298910-66298929 | None:intergenic | 35.0% | |
| TTAAAGAGGCCCATAAGTTA+TGG | + | chr3_3:66298952-66298971 | Msa0465820:intron | 35.0% | |
| TAAAGAGGCCCATAAGTTAT+GGG | + | chr3_3:66298953-66298972 | Msa0465820:intron | 35.0% | |
| TATGACTAATGATGCCTCAA+TGG | - | chr3_3:66298979-66298998 | None:intergenic | 35.0% | |
| TGTCACAGATATGTAGAGAT+TGG | + | chr3_3:66299206-66299225 | Msa0465820:intron | 35.0% | |
| ! | TTAAATGCCTTGTTCCATCA+TGG | - | chr3_3:66299747-66299766 | None:intergenic | 35.0% |
| CTTGTTCTTGACAATGTTTG+TGG | + | chr3_3:66299803-66299822 | Msa0465820:three_prime_UTR | 35.0% | |
| AGAAACAGTAGCATCTCAAG+AGG | + | chr3_3:66296091-66296110 | Msa0465820:five_prime_UTR | 40.0% | |
| GAAACAGTAGCATCTCAAGA+GGG | + | chr3_3:66296092-66296111 | Msa0465820:five_prime_UTR | 40.0% | |
| AGGAGCAATAGCAATAACTG+GGG | - | chr3_3:66296216-66296235 | None:intergenic | 40.0% | |
| GTAGGAGCAATAGCAATAAC+TGG | - | chr3_3:66296218-66296237 | None:intergenic | 40.0% | |
| ATACCTCTTGCATGTTTGGT+AGG | - | chr3_3:66296236-66296255 | None:intergenic | 40.0% | |
| GGCACCTCTTTGAATGATAA+AGG | - | chr3_3:66296467-66296486 | None:intergenic | 40.0% | |
| AACCTCAAGGTGAGATTGTT+TGG | + | chr3_3:66296680-66296699 | Msa0465820:intron | 40.0% | |
| TGGTGTATGACACTAACACA+TGG | - | chr3_3:66296820-66296839 | None:intergenic | 40.0% | |
| !! | AGAGATTTCTGAGACCAAGA+AGG | + | chr3_3:66296947-66296966 | Msa0465820:CDS | 40.0% |
| ! | TTTTAGTCCAGCAACCTTCT+TGG | - | chr3_3:66296964-66296983 | None:intergenic | 40.0% |
| AAGAAGGTTGCTGGACTAAA+AGG | + | chr3_3:66296963-66296982 | Msa0465820:CDS | 40.0% | |
| !! | AAGGTTGTTCTGGCTTATAG+TGG | + | chr3_3:66296996-66297015 | Msa0465820:CDS | 40.0% |
| ATATGCATATACCTCAGCCA+GGG | - | chr3_3:66297047-66297066 | None:intergenic | 40.0% | |
| AATATGCATATACCTCAGCC+AGG | - | chr3_3:66297048-66297067 | None:intergenic | 40.0% | |
| GTTAGTCGTGAAGGATTTGA+AGG | + | chr3_3:66297414-66297433 | Msa0465820:CDS | 40.0% | |
| CTTCCTCTCATAAATTGCAC+CGG | - | chr3_3:66297479-66297498 | None:intergenic | 40.0% | |
| ! | GCAAAGGTACAATTCTGCTT+TGG | + | chr3_3:66297535-66297554 | Msa0465820:intron | 40.0% |
| AGCTATGTAGAAGTTGAGTG+GGG | - | chr3_3:66297720-66297739 | None:intergenic | 40.0% | |
| GAGCTATGTAGAAGTTGAGT+GGG | - | chr3_3:66297721-66297740 | None:intergenic | 40.0% | |
| TGAGCTATGTAGAAGTTGAG+TGG | - | chr3_3:66297722-66297741 | None:intergenic | 40.0% | |
| CAATATGAGACTCTTAACGG+AGG | - | chr3_3:66297745-66297764 | None:intergenic | 40.0% | |
| CGTTAAGAGTCTCATATTGC+AGG | + | chr3_3:66297746-66297765 | Msa0465820:intron | 40.0% | |
| TTATTGTTCATGTTCCAGGC+AGG | + | chr3_3:66297831-66297850 | Msa0465820:intron | 40.0% | |
| TATTGTTCATGTTCCAGGCA+GGG | + | chr3_3:66297832-66297851 | Msa0465820:intron | 40.0% | |
| GAAGTGTGAACTATTTGGGA+AGG | - | chr3_3:66297911-66297930 | None:intergenic | 40.0% | |
| CTCAACCCTACAAAACCATA+TGG | - | chr3_3:66297960-66297979 | None:intergenic | 40.0% | |
| !!! | ATGGTTTTGTAGGGTTGAGT+TGG | + | chr3_3:66297961-66297980 | Msa0465820:intron | 40.0% |
| ! | GAAAGGTAGGATCTAAAGCT+AGG | - | chr3_3:66298081-66298100 | None:intergenic | 40.0% |
| ACACGGATGTTGAGAACAAA+TGG | - | chr3_3:66298219-66298238 | None:intergenic | 40.0% | |
| ACCTTGTACCGGATCTTTAT+TGG | + | chr3_3:66298240-66298259 | Msa0465820:intron | 40.0% | |
| ACCAATAAAGATCCGGTACA+AGG | - | chr3_3:66298244-66298263 | None:intergenic | 40.0% | |
| !! | TTGATGTCTACTGACTTGAC+AGG | + | chr3_3:66298290-66298309 | Msa0465820:intron | 40.0% |
| GTGGATATTGCCAATGAAGT+TGG | + | chr3_3:66298318-66298337 | Msa0465820:CDS | 40.0% | |
| TACAGGGAAAGGAAATGATC+AGG | + | chr3_3:66298365-66298384 | Msa0465820:CDS | 40.0% | |
| CTTGGGATTCAGAGCAAAAA+AGG | - | chr3_3:66298494-66298513 | None:intergenic | 40.0% | |
| ! | GGAGCCACAACATTTAACTT+GGG | - | chr3_3:66298511-66298530 | None:intergenic | 40.0% |
| TGGAGCCACAACATTTAACT+TGG | - | chr3_3:66298512-66298531 | None:intergenic | 40.0% | |
| AGTTAAATGTTGTGGCTCCA+TGG | + | chr3_3:66298512-66298531 | Msa0465820:CDS | 40.0% | |
| ! | TGCTAAGAAGCATAACGTAC+CGG | + | chr3_3:66298576-66298595 | Msa0465820:CDS | 40.0% |
| GTTCCTGTCCCTACTATATA+TGG | - | chr3_3:66298620-66298639 | None:intergenic | 40.0% | |
| CACCCTTCATTGTCACATAT+TGG | - | chr3_3:66298807-66298826 | None:intergenic | 40.0% | |
| ! | GACAATGAAGGGTGATGTTT+TGG | + | chr3_3:66298813-66298832 | Msa0465820:intron | 40.0% |
| CTCAATGGCCCATAACTTAT+GGG | - | chr3_3:66298964-66298983 | None:intergenic | 40.0% | |
| GATTATCAAGGATCGCAACA+TGG | + | chr3_3:66299008-66299027 | Msa0465820:intron | 40.0% | |
| GTAGAGATTGGATTTGAGTC+AGG | + | chr3_3:66299218-66299237 | Msa0465820:CDS | 40.0% | |
| GAGACTTTCTCCAGGAAATT+TGG | + | chr3_3:66299265-66299284 | Msa0465820:CDS | 40.0% | |
| TATGCAGAGTTAGTGTATGC+TGG | + | chr3_3:66299485-66299504 | Msa0465820:CDS | 40.0% | |
| AGTTAGTGTATGCTGGAAGA+TGG | + | chr3_3:66299492-66299511 | Msa0465820:CDS | 40.0% | |
| ! | CGAATCGATGGATTCATTCA+TGG | + | chr3_3:66299529-66299548 | Msa0465820:CDS | 40.0% |
| AAGATCTCACAGACTACAAC+AGG | + | chr3_3:66299554-66299573 | Msa0465820:CDS | 40.0% | |
| TAAAGGTAGTGCTTCTGTGA+CGG | + | chr3_3:66299598-66299617 | Msa0465820:CDS | 40.0% | |
| TACAATCATGCTGATGCTGT+TGG | + | chr3_3:66299683-66299702 | Msa0465820:CDS | 40.0% | |
| ACAATCATGCTGATGCTGTT+GGG | + | chr3_3:66299684-66299703 | Msa0465820:CDS | 40.0% | |
| ! | AGCTTTATGGTCTTCCAATG+AGG | + | chr3_3:66299714-66299733 | Msa0465820:CDS | 40.0% |
| ! | GAGGGTGCAGATAGCAAAAT+TGG | - | chr3_3:66296376-66296395 | None:intergenic | 45.0% |
| !! | TGAATGATAAAGGCGTTGCC+TGG | - | chr3_3:66296457-66296476 | None:intergenic | 45.0% |
| GCAGCACCAAAACTTCTTCT+TGG | - | chr3_3:66296655-66296674 | None:intergenic | 45.0% | |
| AGCCAAACAATCTCACCTTG+AGG | - | chr3_3:66296685-66296704 | None:intergenic | 45.0% | |
| ! | TGAAGTACCAACACAGACAC+TGG | + | chr3_3:66296732-66296751 | Msa0465820:intron | 45.0% |
| !! | GTTGTTCTGGCTTATAGTGG+TGG | + | chr3_3:66296999-66297018 | Msa0465820:CDS | 45.0% |
| TAGTGGTGGCTTAGACACAT+CGG | + | chr3_3:66297013-66297032 | Msa0465820:CDS | 45.0% | |
| TATGCATATACCTCAGCCAG+GGG | - | chr3_3:66297046-66297065 | None:intergenic | 45.0% | |
| GTTTGCTTCACAGCTGATCT+AGG | + | chr3_3:66297169-66297188 | Msa0465820:CDS | 45.0% | |
| TTCTTAGGGGGCAAGTGAAT+TGG | + | chr3_3:66297351-66297370 | Msa0465820:intron | 45.0% | |
| AGCTTCTCAGTTAGTCGTGA+AGG | + | chr3_3:66297405-66297424 | Msa0465820:CDS | 45.0% | |
| AGTCGTGAAGGATTTGAAGG+AGG | + | chr3_3:66297417-66297436 | Msa0465820:CDS | 45.0% | |
| ATGTAGAAGTTGAGTGGGGT+GGG | - | chr3_3:66297716-66297735 | None:intergenic | 45.0% | |
| TATGTAGAAGTTGAGTGGGG+TGG | - | chr3_3:66297717-66297736 | None:intergenic | 45.0% | |
| GCAGGAGATCTAGTCTGAAA+AGG | + | chr3_3:66297764-66297783 | Msa0465820:intron | 45.0% | |
| TATTTGGGAAGGCCAACAAC+AGG | - | chr3_3:66297900-66297919 | None:intergenic | 45.0% | |
| ACCATATGGCGCTGCAATTA+AGG | - | chr3_3:66297946-66297965 | None:intergenic | 45.0% | |
| !!! | CAGCGCCATATGGTTTTGTA+GGG | + | chr3_3:66297952-66297971 | Msa0465820:intron | 45.0% |
| ! | GTAGGATCTAAAGCTAGGTG+AGG | - | chr3_3:66298076-66298095 | None:intergenic | 45.0% |
| ACATCCGTGTAACCTTGTAC+CGG | + | chr3_3:66298229-66298248 | Msa0465820:intron | 45.0% | |
| AGATCCGGTACAAGGTTACA+CGG | - | chr3_3:66298236-66298255 | None:intergenic | 45.0% | |
| !! | TCTACTGACTTGACAGGCTA+TGG | + | chr3_3:66298296-66298315 | Msa0465820:intron | 45.0% |
| AGCATCAGCTCCAACTTCAT+TGG | - | chr3_3:66298331-66298350 | None:intergenic | 45.0% | |
| TCCTTTCCCTGTACAACCAT+GGG | - | chr3_3:66298358-66298377 | None:intergenic | 45.0% | |
| TTCCTTTCCCTGTACAACCA+TGG | - | chr3_3:66298359-66298378 | None:intergenic | 45.0% | |
| TAAATGTTGTGGCTCCATGG+AGG | + | chr3_3:66298515-66298534 | Msa0465820:CDS | 45.0% | |
| AAATGTTGTGGCTCCATGGA+GGG | + | chr3_3:66298516-66298535 | Msa0465820:CDS | 45.0% | |
| ATAGTAGGGACAGGAACCTT+TGG | + | chr3_3:66298623-66298642 | Msa0465820:CDS | 45.0% | |
| CCTCATGAGTTATGTGCCAA+AGG | - | chr3_3:66298642-66298661 | None:intergenic | 45.0% | |
| CCTTTGGCACATAACTCATG+AGG | + | chr3_3:66298639-66298658 | Msa0465820:CDS | 45.0% | |
| TGGCACATAACTCATGAGGT+AGG | + | chr3_3:66298643-66298662 | Msa0465820:intron | 45.0% | |
| CCTCAATGGCCCATAACTTA+TGG | - | chr3_3:66298965-66298984 | None:intergenic | 45.0% | |
| CCATAAGTTATGGGCCATTG+AGG | + | chr3_3:66298962-66298981 | Msa0465820:intron | 45.0% | |
| GGCATTCCAGTATCAGTGAA+CGG | + | chr3_3:66299239-66299258 | Msa0465820:CDS | 45.0% | |
| GCATTCCAGTATCAGTGAAC+GGG | + | chr3_3:66299240-66299259 | Msa0465820:CDS | 45.0% | |
| AGCTCAGCAACCAAATTTCC+TGG | - | chr3_3:66299278-66299297 | None:intergenic | 45.0% | |
| GTTGCTGAGCTGAATGAGAT+AGG | + | chr3_3:66299287-66299306 | Msa0465820:CDS | 45.0% | |
| AGCTGAATGAGATAGGTGGA+AGG | + | chr3_3:66299294-66299313 | Msa0465820:CDS | 45.0% | |
| AATGAGATAGGTGGAAGGCA+TGG | + | chr3_3:66299299-66299318 | Msa0465820:CDS | 45.0% | |
| ! | ATAGGTGGAAGGCATGGAAT+AGG | + | chr3_3:66299305-66299324 | Msa0465820:CDS | 45.0% |
| TTGGTTGAAGACCGCATTGT+AGG | + | chr3_3:66299338-66299357 | Msa0465820:CDS | 45.0% | |
| CTGGAGTTTCGTAAACTCCT+CGG | - | chr3_3:66299373-66299392 | None:intergenic | 45.0% | |
| TCTTGCTGCAGTGAAGAGAA+TGG | - | chr3_3:66299402-66299421 | None:intergenic | 45.0% | |
| AAAGGTAGTGCTTCTGTGAC+GGG | + | chr3_3:66299599-66299618 | Msa0465820:CDS | 45.0% | |
| !! | ATCATGGCTCTGATCCTCAT+TGG | - | chr3_3:66299731-66299750 | None:intergenic | 45.0% |
| AATGAGGATCAGAGCCATGA+TGG | + | chr3_3:66299730-66299749 | Msa0465820:CDS | 45.0% | |
| ! | ATCAGAGCCATGATGGAACA+AGG | + | chr3_3:66299737-66299756 | Msa0465820:CDS | 45.0% |
| GCTCCTACCAAACATGCAAG+AGG | + | chr3_3:66296230-66296249 | Msa0465820:CDS | 50.0% | |
| ! | GGTGCTGCAAGTAAACCTCA+AGG | + | chr3_3:66296667-66296686 | Msa0465820:CDS | 50.0% |
| ! | TCTGAGACCAAGAAGGTTGC+TGG | + | chr3_3:66296954-66296973 | Msa0465820:CDS | 50.0% |
| TAGGGGGCAAGTGAATTGGA+AGG | + | chr3_3:66297355-66297374 | Msa0465820:intron | 50.0% | |
| GAAGAGAAGGCAAAAGCCAG+CGG | + | chr3_3:66297382-66297401 | Msa0465820:CDS | 50.0% | |
| ! | GTGCCGGTGCAATTTATGAG+AGG | + | chr3_3:66297473-66297492 | Msa0465820:CDS | 50.0% |
| AGCTCGCCCTGTAATTGCAA+AGG | + | chr3_3:66297519-66297538 | Msa0465820:CDS | 50.0% | |
| GTCTGTATGACCTTGCCCTT+GGG | - | chr3_3:66297674-66297693 | None:intergenic | 50.0% | |
| TGTCTGTATGACCTTGCCCT+TGG | - | chr3_3:66297675-66297694 | None:intergenic | 50.0% | |
| ACCAAGCCCATCTGCTAAGA+TGG | + | chr3_3:66297855-66297874 | Msa0465820:intron | 50.0% | |
| ! | ACCATCTTAGCAGATGGGCT+TGG | - | chr3_3:66297859-66297878 | None:intergenic | 50.0% |
| GCCTTAATTGCAGCGCCATA+TGG | + | chr3_3:66297942-66297961 | Msa0465820:intron | 50.0% | |
| !!! | GCAGCGCCATATGGTTTTGT+AGG | + | chr3_3:66297951-66297970 | Msa0465820:intron | 50.0% |
| GATCCTACCTTTCCTTAGGC+AGG | + | chr3_3:66298088-66298107 | Msa0465820:intron | 50.0% | |
| TAGCCTGCCTAAGGAAAGGT+AGG | - | chr3_3:66298094-66298113 | None:intergenic | 50.0% | |
| TGGATAGCCTGCCTAAGGAA+AGG | - | chr3_3:66298098-66298117 | None:intergenic | 50.0% | |
| ACACATGGATAGCCTGCCTA+AGG | - | chr3_3:66298103-66298122 | None:intergenic | 50.0% | |
| !! | ACTGACTTGACAGGCTATGG+TGG | + | chr3_3:66298299-66298318 | Msa0465820:intron | 50.0% |
| CTGTCTCCCATGGTTGTACA+GGG | + | chr3_3:66298349-66298368 | Msa0465820:CDS | 50.0% | |
| TCCCATGGTTGTACAGGGAA+AGG | + | chr3_3:66298354-66298373 | Msa0465820:CDS | 50.0% | |
| GTAATATCCCACTCCCTCCA+TGG | - | chr3_3:66298532-66298551 | None:intergenic | 50.0% | |
| TGGAGGGAGTGGGATATTAC+AGG | + | chr3_3:66298532-66298551 | Msa0465820:CDS | 50.0% | |
| GGAGGGAGTGGGATATTACA+GGG | + | chr3_3:66298533-66298552 | Msa0465820:CDS | 50.0% | |
| ! | CATGCTTACTCTGGCTCGTT+TGG | - | chr3_3:66298901-66298920 | None:intergenic | 50.0% |
| CAACCAGCCTTAACCGTAAC+AGG | + | chr3_3:66299034-66299053 | Msa0465820:intron | 50.0% | |
| CCTTAATCGCGGTCCTGTTA+CGG | - | chr3_3:66299050-66299069 | None:intergenic | 50.0% | |
| AGCTGATGCAGCCTTAATCG+CGG | - | chr3_3:66299061-66299080 | None:intergenic | 50.0% | |
| CTCTTCCCGTTCACTGATAC+TGG | - | chr3_3:66299248-66299267 | None:intergenic | 50.0% | |
| AACGGGAAGAGACTTTCTCC+AGG | + | chr3_3:66299257-66299276 | Msa0465820:CDS | 50.0% | |
| GCTGAGCTGAATGAGATAGG+TGG | + | chr3_3:66299290-66299309 | Msa0465820:CDS | 50.0% | |
| GGTCTTCAACCAAGTCGACA+CGG | - | chr3_3:66299331-66299350 | None:intergenic | 50.0% | |
| GGCTCTTCATGCCTACAATG+CGG | - | chr3_3:66299352-66299371 | None:intergenic | 50.0% | |
| ATTGTAGGCATGAAGAGCCG+AGG | + | chr3_3:66299353-66299372 | Msa0465820:CDS | 50.0% | |
| CGAGGAGTTTACGAAACTCC+AGG | + | chr3_3:66299371-66299390 | Msa0465820:CDS | 50.0% | |
| GGAGTTTACGAAACTCCAGG+TGG | + | chr3_3:66299374-66299393 | Msa0465820:CDS | 50.0% | |
| CTTCACTGCAGCAAGAGACT+TGG | + | chr3_3:66299406-66299425 | Msa0465820:CDS | 50.0% | |
| TGATCCACTTCGCGAATCGA+TGG | + | chr3_3:66299517-66299536 | Msa0465820:CDS | 50.0% | |
| !! | GAATCCATCGATTCGCGAAG+TGG | - | chr3_3:66299524-66299543 | None:intergenic | 50.0% |
| ! | TAGAGCACCTGCTGCATCAC+CGG | + | chr3_3:66296426-66296445 | Msa0465820:intron | 55.0% |
| GTCGTGTCCAGTGTCTGTGT+TGG | - | chr3_3:66296742-66296761 | None:intergenic | 55.0% | |
| ! | ACACATCGGTTGTTGTCCCC+TGG | + | chr3_3:66297027-66297046 | Msa0465820:CDS | 55.0% |
| GACTAACTGAGAAGCTCCGC+TGG | - | chr3_3:66297401-66297420 | None:intergenic | 55.0% | |
| ! | CATAAATTGCACCGGCACGC+AGG | - | chr3_3:66297471-66297490 | None:intergenic | 55.0% |
| !! | AGTTGAGTGGGGTGGGTTAG+AGG | - | chr3_3:66297709-66297728 | None:intergenic | 55.0% |
| GCTGTCTCCCATGGTTGTAC+AGG | + | chr3_3:66298348-66298367 | Msa0465820:CDS | 55.0% | |
| ! | CATGTTGACTGCAGACCCAG+AGG | + | chr3_3:66298870-66298889 | Msa0465820:CDS | 55.0% |
| ! | GCTCGTTTGGAGCATCCTCT+GGG | - | chr3_3:66298888-66298907 | None:intergenic | 55.0% |
| GGTCCTGTTACGGTTAAGGC+TGG | - | chr3_3:66299040-66299059 | None:intergenic | 55.0% | |
| TCGCGGTCCTGTTACGGTTA+AGG | - | chr3_3:66299044-66299063 | None:intergenic | 55.0% | |
| CCGTAACAGGACCGCGATTA+AGG | + | chr3_3:66299047-66299066 | Msa0465820:intron | 55.0% | |
| !! | TGGAATAGGCCGTGTCGACT+TGG | + | chr3_3:66299319-66299338 | Msa0465820:CDS | 55.0% |
| !! | GTGAAGAGAATGGTGCCACC+TGG | - | chr3_3:66299392-66299411 | None:intergenic | 55.0% |
| !! | GTAGTGCTTCTGTGACGGGT+CGG | + | chr3_3:66299603-66299622 | Msa0465820:CDS | 55.0% |
| !! | AAGGCGTTGCCTGGCAGAAC+CGG | - | chr3_3:66296448-66296467 | None:intergenic | 60.0% |
| GTATTCCCTTGCCTGCGTGC+CGG | + | chr3_3:66297457-66297476 | Msa0465820:CDS | 60.0% | |
| TCAGTAGCTGAGTCGGCCCA+AGG | + | chr3_3:66297655-66297674 | Msa0465820:intron | 60.0% | |
| CAGTAGCTGAGTCGGCCCAA+GGG | + | chr3_3:66297656-66297675 | Msa0465820:intron | 60.0% | |
| GGAGCTGATGCTGTCTCCCA+TGG | + | chr3_3:66298339-66298358 | Msa0465820:CDS | 60.0% | |
| TTGTGGCTCCATGGAGGGAG+TGG | + | chr3_3:66298521-66298540 | Msa0465820:CDS | 60.0% | |
| TGTGGCTCCATGGAGGGAGT+GGG | + | chr3_3:66298522-66298541 | Msa0465820:CDS | 60.0% | |
| ! | GGCTCGTTTGGAGCATCCTC+TGG | - | chr3_3:66298889-66298908 | None:intergenic | 60.0% |
| GGCAGAACCGGTGATGCAGC+AGG | - | chr3_3:66296436-66296455 | None:intergenic | 65.0% | |
| !! | GCTGCATCACCGGTTCTGCC+AGG | + | chr3_3:66296436-66296455 | Msa0465820:CDS | 65.0% |
| CGGTTGTTGTCCCCTGGCTG+AGG | + | chr3_3:66297033-66297052 | Msa0465820:CDS | 65.0% | |
| ! | TTGCACCGGCACGCAGGCAA+GGG | - | chr3_3:66297465-66297484 | None:intergenic | 65.0% |
| ! | ATTGCACCGGCACGCAGGCA+AGG | - | chr3_3:66297466-66297485 | None:intergenic | 65.0% |
| ! | AGATGGGCTTGGTCCCTGCC+TGG | - | chr3_3:66297848-66297867 | None:intergenic | 65.0% |
| GCTGAGTCGGCCCAAGGGCA+AGG | + | chr3_3:66297661-66297680 | Msa0465820:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 66296065 | 66299868 | 66296065 | ID=Msa0465820;Name=Msa0465820 |
| chr3_3 | mRNA | 66296065 | 66299868 | 66296065 | ID=Msa0465820-mRNA-1;Parent=Msa0465820;Name=Msa0465820-mRNA-1;_AED=0.28;_eAED=0.28;_QI=114|1|1|1|1|1|10|102|479 |
| chr3_3 | exon | 66296065 | 66296251 | 66296065 | ID=Msa0465820-mRNA-1:exon:15014;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66296429 | 66296481 | 66296429 | ID=Msa0465820-mRNA-1:exon:15015;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66296646 | 66296688 | 66296646 | ID=Msa0465820-mRNA-1:exon:15016;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66296919 | 66297054 | 66296919 | ID=Msa0465820-mRNA-1:exon:15017;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66297147 | 66297195 | 66297147 | ID=Msa0465820-mRNA-1:exon:15018;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66297358 | 66297540 | 66297358 | ID=Msa0465820-mRNA-1:exon:15019;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66298312 | 66298386 | 66298312 | ID=Msa0465820-mRNA-1:exon:15020;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66298475 | 66298660 | 66298475 | ID=Msa0465820-mRNA-1:exon:15021;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66298823 | 66298911 | 66298823 | ID=Msa0465820-mRNA-1:exon:15022;Parent=Msa0465820-mRNA-1 |
| chr3_3 | exon | 66299214 | 66299868 | 66299214 | ID=Msa0465820-mRNA-1:exon:15023;Parent=Msa0465820-mRNA-1 |
| chr3_3 | five_prime_UTR | 66296065 | 66296178 | 66296065 | ID=Msa0465820-mRNA-1:five_prime_utr;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66296179 | 66296251 | 66296179 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66296429 | 66296481 | 66296429 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66296646 | 66296688 | 66296646 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66296919 | 66297054 | 66296919 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66297147 | 66297195 | 66297147 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66297358 | 66297540 | 66297358 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66298312 | 66298386 | 66298312 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66298475 | 66298660 | 66298475 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66298823 | 66298911 | 66298823 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | CDS | 66299214 | 66299766 | 66299214 | ID=Msa0465820-mRNA-1:cds;Parent=Msa0465820-mRNA-1 |
| chr3_3 | three_prime_UTR | 66299767 | 66299868 | 66299767 | ID=Msa0465820-mRNA-1:three_prime_utr;Parent=Msa0465820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
