AlfalfaGEDB | Msa0372300

M. sativa cultivar zhongmu-4 / Msa0372300

KEGG: -
GO: -
PFAM: PF12906.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372300	XP_013461156.1	95.588	476	7	1	1	462	1	476	0.0	931

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372300	A0A072VAG8	95.588	476	7	1	1	462	1	476	0.0	931

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017670	Msa0372300	0.824036	1.003014e-53	-8.615850e-47
Msa0030700	Msa0372300	0.839508	1.519861e-57	-8.615850e-47
Msa0078120	Msa0372300	0.833977	3.911582e-56	-8.615850e-47
Msa0098040	Msa0372300	0.831153	1.961646e-55	-8.615850e-47
Msa0105410	Msa0372300	0.805598	1.235581e-49	-8.615850e-47
Msa0123800	Msa0372300	0.818850	1.580505e-52	-8.615850e-47
Msa0152850	Msa0372300	0.824715	6.946039e-54	-8.615850e-47
Msa0168310	Msa0372300	0.803065	4.163774e-49	-8.615850e-47
Msa0220400	Msa0372300	-0.825781	3.887560e-54	-8.615850e-47
Msa0235290	Msa0372300	0.814360	1.603036e-51	-8.615850e-47

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372300	MtrunA17_Chr3g0120281	95.588	476	7	1	1	462	1	476	0.0	931
Msa0372300	MtrunA17_Chr4g0029221	44.780	431	198	9	45	454	95	506	2.75e-108	330
Msa0372300	MtrunA17_Chr1g0181371	39.277	415	200	12	67	454	97	486	1.12e-87	276
Msa0372300	MtrunA17_Chr2g0326551	40.967	393	195	11	71	441	89	466	2.47e-82	263
Msa0372300	MtrunA17_Chr2g0286611	34.515	423	212	15	25	424	24	404	1.56e-57	195
Msa0372300	MtrunA17_Chr7g0246251	32.883	222	94	5	256	437	1	207	1.53e-28	112
Msa0372300	MtrunA17_Chr7g0246271	37.427	171	77	5	238	392	45	201	6.08e-27	107
Msa0372300	MtrunA17_Chr7g0240961	41.304	92	41	3	214	294	80	169	2.92e-12	66.2

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372300	AT5G60580.1	48.446	386	159	10	55	422	84	447	6.59e-104	318
Msa0372300	AT5G60580.3	48.446	386	159	10	55	422	84	447	6.59e-104	318
Msa0372300	AT5G60580.4	47.583	393	159	11	55	422	84	454	4.46e-101	311
Msa0372300	AT5G60580.2	47.583	393	159	11	55	422	84	454	4.46e-101	311
Msa0372300	AT3G09760.1	40.420	381	184	11	76	435	115	473	9.33e-82	261
Msa0372300	AT5G03180.1	38.083	386	185	14	76	437	97	452	3.89e-76	246
Msa0372300	AT5G03180.4	37.887	388	187	14	76	437	62	421	8.92e-76	244
Msa0372300	AT5G03180.2	37.113	388	190	13	76	437	97	456	1.74e-75	244
Msa0372300	AT3G06330.1	34.889	407	211	10	33	424	48	415	3.02e-58	198
Msa0372300	AT3G06330.4	41.111	270	132	4	171	426	50	306	3.60e-57	192

Showing 1 to 10 of 19 entries

Previous1 2Next

Find 110 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTATGCCGAACAACAGT+CGG	0.564365	3_1:-70684432	None:intergenic
AAGATTGGCATTCTAGAGTG+TGG	0.608275	3_1:+70686999	Msa0372300:three_prime_UTR
AATAGAATATATGCGCAAAC+AGG	0.461916	3_1:-70686585	None:intergenic
AATGAAATGGCGAGAGCACG+TGG	0.562922	3_1:-70685840	None:intergenic
ACAGGATGACAAATGCGAAC+TGG	0.485665	3_1:-70686567	None:intergenic
ACCAAGACTGTGCAGTAAAG+TGG	0.528389	3_1:+70684322	Msa0372300:CDS
ACCACTTTACTGCACAGTCT+TGG	0.510134	3_1:-70684323	None:intergenic
ACTTGAAATATAATAGGAAA+TGG	0.409263	3_1:-70682322	None:intergenic
ACTTTGGTAGAATGTGGCCT+TGG	0.449976	3_1:-70683212	None:intergenic
AGAATGCAGACATATACTCT+AGG	0.607758	3_1:+70687067	Msa0372300:three_prime_UTR

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAAGAAAGAAGCAAAAG+GGG	-	chr3_1:70682491-70682510	None:intergenic	30.0%
TTATATCATCTTCTACCCTA+TGG	-	chr3_1:70682590-70682609	None:intergenic	30.0%
ATTTGTAGAGATGAAAGACT+AGG	-	chr3_1:70683101-70683120	None:intergenic	30.0%
ATAATAAGCCTTCAACTTCA+AGG	+	chr3_1:70683357-70683376	Msa0372300:CDS	30.0%
TTATGCTGTTCTCATAGTAA+TGG	+	chr3_1:70683518-70683537	Msa0372300:intron	30.0%
ATCTTCAAATAAGCTTGTCA+TGG	-	chr3_1:70684039-70684058	None:intergenic	30.0%
GTAAAGTGGTTTAGTATCAA+AGG	+	chr3_1:70684336-70684355	Msa0372300:CDS	30.0%
TCTAATATGTAAGTTTGACG+AGG	-	chr3_1:70684545-70684564	None:intergenic	30.0%
TTCGCTTTGCTTTGATTATA+AGG	+	chr3_1:70684669-70684688	Msa0372300:intron	30.0%
TATAATTAGAGAAGGCAGTT+GGG	-	chr3_1:70685535-70685554	None:intergenic	30.0%

Showing 1 to 10 of 307 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	70682321	70687139	70682321	ID=Msa0372300;Name=Msa0372300
chr3_1	mRNA	70682321	70687139	70682321	ID=Msa0372300-mRNA-1;Parent=Msa0372300;Name=Msa0372300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=77\|0.85\|0.87\|1\|0.57\|0.62\|8\|235\|462
chr3_1	exon	70682321	70682472	70682321	ID=Msa0372300-mRNA-1:exon:15405;Parent=Msa0372300-mRNA-1
chr3_1	exon	70683089	70683511	70683089	ID=Msa0372300-mRNA-1:exon:15406;Parent=Msa0372300-mRNA-1
chr3_1	exon	70683617	70683791	70683617	ID=Msa0372300-mRNA-1:exon:15407;Parent=Msa0372300-mRNA-1
chr3_1	exon	70684193	70684490	70684193	ID=Msa0372300-mRNA-1:exon:15408;Parent=Msa0372300-mRNA-1
chr3_1	exon	70685568	70685598	70685568	ID=Msa0372300-mRNA-1:exon:15409;Parent=Msa0372300-mRNA-1
chr3_1	exon	70685825	70685915	70685825	ID=Msa0372300-mRNA-1:exon:15410;Parent=Msa0372300-mRNA-1
chr3_1	exon	70686533	70686612	70686533	ID=Msa0372300-mRNA-1:exon:15411;Parent=Msa0372300-mRNA-1
chr3_1	exon	70686689	70687139	70686689	ID=Msa0372300-mRNA-1:exon:15412;Parent=Msa0372300-mRNA-1
chr3_1	five_prime_UTR	70682321	70682397	70682321	ID=Msa0372300-mRNA-1:five_prime_utr;Parent=Msa0372300-mRNA-1
chr3_1	CDS	70682398	70682472	70682398	ID=Msa0372300-mRNA-1:cds;Parent=Msa0372300-mRNA-1
chr3_1	CDS	70683089	70683511	70683089	ID=Msa0372300-mRNA-1:cds;Parent=Msa0372300-mRNA-1
chr3_1	CDS	70683617	70683791	70683617	ID=Msa0372300-mRNA-1:cds;Parent=Msa0372300-mRNA-1
chr3_1	CDS	70684193	70684490	70684193	ID=Msa0372300-mRNA-1:cds;Parent=Msa0372300-mRNA-1
chr3_1	CDS	70685568	70685598	70685568	ID=Msa0372300-mRNA-1:cds;Parent=Msa0372300-mRNA-1
chr3_1	CDS	70685825	70685915	70685825	ID=Msa0372300-mRNA-1:cds;Parent=Msa0372300-mRNA-1
chr3_1	CDS	70686533	70686612	70686533	ID=Msa0372300-mRNA-1:cds;Parent=Msa0372300-mRNA-1
chr3_1	CDS	70686689	70686904	70686689	ID=Msa0372300-mRNA-1:cds;Parent=Msa0372300-mRNA-1
chr3_1	three_prime_UTR	70686905	70687139	70686905	ID=Msa0372300-mRNA-1:three_prime_utr;Parent=Msa0372300-mRNA-1

Gene Sequence

>Msa0372300

ATGGAGAAGGAAGGTGTTGAACTTCAAACTGATGCAGTTCCAATGATGTCAGATTCTTCTCTTCTTCATCATCAGTCCAGAAGGCCTAGTCTTTCATCTCTACAAATACCAACAAGGACACTAGAAAGTGCATTATCATCTTCTACCAAGACAGATGGTCCTACATTATCAAGTCCAGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACCAAAGTCAAGTCCTCTATGAAAAATTTACTTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCAGAAGATTCTGAAAAGAGAGTTTTGATTGTTTCTGATACTTTATCATCAGATAATGGTCCTTTGGATAATAAGCCTTCAACTTCAAGGTCTCATTCACTTAATAAGATTCTGTTCCCTTCATCGAGTAAAGCGGCGCATTCGTTACCGGTTACTCCAATTGCTAATTCAGGTGCAGAGAATGTACATGGAAGACATGTAGAGGGTGGTTCTGATTCAAATAAATCGAAAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTAATGTCAAAGCCGCTAATTTAAGACCTGCAACAGATTCTAGGCGTCTGGTTCGTGTAATTTCAGCAAGACCACAGCCAGCAACTACTGATGGTGTTTCAACCCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCCGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGGGGAGATACTCTTAGGATGGACTGCAGTTGCAAAGGTGAGCTTGCACTTGCACACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTCTGCAAGCAGGATGTCCGGAATCTTCCAGTAACACTCTTGAAAATTTCTAGTCCGCCGACTGTTGTTCGGCATACGTTGAATGCATCACAACAGAGAGCAGTAACTAATTACAGGATCTGGCAGGATGTACCAGTACTTGTCTTGGTTTCAGATTTGGGCCCACGTGCTCTCGCCATTTCATTGCCTTTCTCCTGCATTTTAGGTCTCCTTTCATCTATCATTGCTTCAACCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTCGCATTTGTCATCCTGTTTGCGCATATATTCTATTCCATACTTAATGTGAGTGCGGTTTTCTCGGTTCTTCTTTCAACATTCACTGGATTTGGGATTGCAATCAGCATGAATTCTCTCCTAATGGAATATATCAGATGGGAAACAAATAGGCAGATTCGATCTTCTAATCAACATATTATTTCGAGTCAGCAGCAGCAAGAAACTCAGAGACAACCACATCAACTGCAAAGGATGCAGCAAGAGCAGCACCAATGA

Protein sequence

>Msa0372300

MEKEGVELQTDAVPMMSDSSLLHHQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMKNLLSDRSFRTKTCSEDSEKRVLIVSDTLSSDNGPLDNKPSTSRSHSLNKILFPSSSKAAHSLPVTPIANSGAENVHGRHVEGGSDSNKSKVNKHMTRSFSVPVNVKAANLRPATDSRRLVRVISARPQPATTDGVSTRSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVRHTLNASQQRAVTNYRIWQDVPVLVLVSDLGPRALAISLPFSCILGLLSSIIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVSAVFSVLLSTFTGFGIAISMNSLLMEYIRWETNRQIRSSNQHIISSQQQQETQRQPHQLQRMQQEQHQ*