Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418450 | XP_003602086.1 | 97.495 | 479 | 10 | 1 | 1 | 479 | 1 | 477 | 0.0 | 961 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418450 | sp|Q9SZX3|ASSY_ARATH | 75.658 | 456 | 97 | 3 | 36 | 477 | 37 | 492 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418450 | G7J524 | 97.495 | 479 | 10 | 1 | 1 | 479 | 1 | 477 | 0.0 | 961 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0146930 | Msa0418450 | 0.802927 | 4.446835e-49 | -8.615850e-47 |
| Msa0235290 | Msa0418450 | 0.819089 | 1.394807e-52 | -8.615850e-47 |
| Msa0365210 | Msa0418450 | 0.804266 | 2.346401e-49 | -8.615850e-47 |
| Msa0418450 | Msa0465820 | 0.944262 | 2.693551e-103 | -8.615850e-47 |
| Msa0418450 | Msa0596840 | 0.807457 | 5.008158e-50 | -8.615850e-47 |
| Msa0418450 | Msa0657710 | 0.814162 | 1.773093e-51 | -8.615850e-47 |
| Msa0418450 | Msa0657720 | 0.810545 | 1.093000e-50 | -8.615850e-47 |
| Msa0418450 | Msa0702790 | 0.802489 | 5.476203e-49 | -8.615850e-47 |
| Msa0418450 | Msa0702800 | 0.804098 | 2.542048e-49 | -8.615850e-47 |
| Msa0418450 | Msa0795750 | 0.800709 | 1.269055e-48 | -8.615850e-47 |
| Msa0418450 | Msa0828950 | 0.803294 | 3.733577e-49 | -8.615850e-47 |
| Msa0418450 | Msa0828960 | 0.807050 | 6.108791e-50 | -8.615850e-47 |
| Msa0418450 | Msa0972680 | 0.805885 | 1.075414e-49 | -8.615850e-47 |
| Msa0418450 | Msa1106590 | 0.800371 | 1.487294e-48 | -8.615850e-47 |
| Msa0418450 | Msa1421850 | 0.987047 | 7.213679e-169 | -8.615850e-47 |
| Msa0284800 | Msa0418450 | 0.810842 | 9.427950e-51 | -8.615850e-47 |
| Msa0313900 | Msa0418450 | 0.802786 | 4.755814e-49 | -8.615850e-47 |
| Msa0330520 | Msa0418450 | 0.807500 | 4.902750e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418450 | MtrunA17_Chr3g0116191 | 97.495 | 479 | 10 | 1 | 1 | 479 | 1 | 477 | 0.0 | 961 |
| Msa0418450 | MtrunA17_Chr5g0418151 | 78.423 | 482 | 99 | 4 | 1 | 479 | 1 | 480 | 0.0 | 800 |
| Msa0418450 | MtrunA17_Chr4g0057681 | 77.547 | 481 | 103 | 3 | 1 | 479 | 1 | 478 | 0.0 | 792 |
| Msa0418450 | MtrunA17_Chr3g0116211 | 92.105 | 38 | 3 | 0 | 228 | 265 | 5 | 42 | 3.25e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0418450 | AT4G24830.1 | 75.658 | 456 | 97 | 3 | 36 | 477 | 37 | 492 | 0.0 | 736 |
| Msa0418450 | AT4G24830.2 | 68.421 | 456 | 86 | 4 | 36 | 477 | 37 | 448 | 0.0 | 643 |
Find 133 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGTTTATAAAGCTTTA+TGG | 0.195100 | 3_2:+66203998 | Msa0418450:CDS |
| GAGACTTTCTCCAGGAAATT+TGG | 0.219965 | 3_2:+66203562 | Msa0418450:CDS |
| CATTTAAATGTTGCTTTGTT+TGG | 0.232185 | 3_2:+66204057 | Msa0418450:exon |
| GGCTCGTTTGGAGCATCCTC+TGG | 0.264292 | 3_2:-66203183 | None:intergenic |
| GCAGCACCAAAACTTCTTCT+TGG | 0.269528 | 3_2:-66200948 | None:intergenic |
| CTCTTCCCGTTCACTGATAC+TGG | 0.283687 | 3_2:-66203542 | None:intergenic |
| TAAATTGAATAAGGTTGTTC+TGG | 0.285220 | 3_2:+66201282 | Msa0418450:CDS |
| TCCAGCAAATGAACCTAAAA+AGG | 0.289546 | 3_2:+66203137 | Msa0418450:CDS |
| AATTGTACCTTTGCAATTAC+AGG | 0.294100 | 3_2:-66201822 | None:intergenic |
| TATAATACCTCTTGCATGTT+TGG | 0.299208 | 3_2:-66200534 | None:intergenic |
| AAGAAGGTTGCTGGACTAAA+AGG | 0.307828 | 3_2:+66201259 | Msa0418450:CDS |
| GTTCCTGTCCCTACTATATA+TGG | 0.308253 | 3_2:-66202914 | None:intergenic |
| TCCAAACAACCATAATAAAA+AGG | 0.314770 | 3_2:+66200412 | Msa0418450:five_prime_UTR |
| AGAGTCCTTATAGTTTATAT+AGG | 0.334609 | 3_2:+66203924 | Msa0418450:CDS |
| CATGCTTACTCTGGCTCGTT+TGG | 0.336131 | 3_2:-66203195 | None:intergenic |
| AGCTCAGCAACCAAATTTCC+TGG | 0.338037 | 3_2:-66203572 | None:intergenic |
| GACAATGAAGGGTGATGTTT+TGG | 0.341023 | 3_2:+66203110 | Msa0418450:intron |
| CTTGTTCTTGACAATGTTTG+TGG | 0.349316 | 3_2:+66204102 | Msa0418450:three_prime_UTR |
| TCTTCCCTATATAAACTATA+AGG | 0.355120 | 3_2:-66203929 | None:intergenic |
| ATTTGAAGGAGGAATTTGTT+AGG | 0.362363 | 3_2:+66201724 | Msa0418450:CDS |
| TGGAGGGAGTGGGATATTAC+AGG | 0.373658 | 3_2:+66202829 | Msa0418450:CDS |
| GTAGGAGCAATAGCAATAAC+TGG | 0.378943 | 3_2:-66200512 | None:intergenic |
| GTTTGCTTCACAGCTGATCT+AGG | 0.379181 | 3_2:+66201465 | Msa0418450:CDS |
| TCTGAGACCAAGAAGGTTGC+TGG | 0.380668 | 3_2:+66201250 | Msa0418450:CDS |
| ACTAAAAGGTAAATTGAATA+AGG | 0.382723 | 3_2:+66201273 | Msa0418450:CDS |
| GTGAGTTTGAAACTGTATAA+AGG | 0.393785 | 3_2:+66203878 | Msa0418450:CDS |
| TTGAGTCCAAGAAGAAGTTT+TGG | 0.398524 | 3_2:+66200942 | Msa0418450:CDS |
| GAGTCCTTATAGTTTATATA+GGG | 0.398664 | 3_2:+66203925 | Msa0418450:CDS |
| GGCACCTCTTTGAATGATAA+AGG | 0.401550 | 3_2:-66200760 | None:intergenic |
| CGAATCGATGGATTCATTCA+TGG | 0.403729 | 3_2:+66203826 | Msa0418450:CDS |
| TTATATTTCAGAGAGAACTA+TGG | 0.433222 | 3_2:+66201432 | Msa0418450:intron |
| CTTCACTGCAGCAAGAGACT+TGG | 0.434941 | 3_2:+66203703 | Msa0418450:CDS |
| GTTGCTGAGCTGAATGAGAT+AGG | 0.447227 | 3_2:+66203584 | Msa0418450:CDS |
| TGGAGCCACAACATTTAACT+TGG | 0.448067 | 3_2:-66202806 | None:intergenic |
| AAGGCGTTGCCTGGCAGAAC+CGG | 0.451413 | 3_2:-66200741 | None:intergenic |
| GCTGTCTCCCATGGTTGTAC+AGG | 0.452794 | 3_2:+66202645 | Msa0418450:CDS |
| GTAGAGATTGGATTTGAGTC+AGG | 0.455723 | 3_2:+66203515 | Msa0418450:CDS |
| TTGGTTGAAGACCGTATTGT+AGG | 0.457847 | 3_2:+66203635 | Msa0418450:CDS |
| AAGATCTCACAGACTACAAC+AGG | 0.459666 | 3_2:+66203851 | Msa0418450:CDS |
| TTTGAAGGAGGAATTTGTTA+GGG | 0.460026 | 3_2:+66201725 | Msa0418450:CDS |
| GGCAGAACCGGTGATGCAGC+AGG | 0.464683 | 3_2:-66200729 | None:intergenic |
| ATCATGGCTCTGATCCTCAT+TGG | 0.465937 | 3_2:-66204025 | None:intergenic |
| TGTCACAGATATGTAGAGAT+TGG | 0.471518 | 3_2:+66203503 | Msa0418450:intron |
| AGCATCAGCTCCAACTTCAT+TGG | 0.473132 | 3_2:-66202625 | None:intergenic |
| ATAGGTGGAAGGCATGGAAT+AGG | 0.474520 | 3_2:+66203602 | Msa0418450:CDS |
| TTAAATGCCTTGTTCCATCA+TGG | 0.476647 | 3_2:-66204041 | None:intergenic |
| TTTGCAGAGTTAGTGTATGC+TGG | 0.481427 | 3_2:+66203782 | Msa0418450:CDS |
| GCATTCCAGTATCAGTGAAC+GGG | 0.482377 | 3_2:+66203537 | Msa0418450:CDS |
| GCTGCATCACCGGTTCTGCC+AGG | 0.483785 | 3_2:+66200732 | Msa0418450:CDS |
| TCCTTTCCCTGTACAACCAT+GGG | 0.485988 | 3_2:-66202652 | None:intergenic |
| TTGTGGCTCCATGGAGGGAG+TGG | 0.488608 | 3_2:+66202818 | Msa0418450:CDS |
| ATAGTAGGGACAGGAACCTT+TGG | 0.489226 | 3_2:+66202920 | Msa0418450:CDS |
| AAAGGTAGTGCTTCTGTGAC+GGG | 0.492018 | 3_2:+66203896 | Msa0418450:CDS |
| TACAGGGAAAGGAAATGATC+AGG | 0.493714 | 3_2:+66202662 | Msa0418450:CDS |
| TGATCCACTTCGCGAATCGA+TGG | 0.495410 | 3_2:+66203814 | Msa0418450:CDS |
| ACACATCGGTTGTTGTCCCC+TGG | 0.498273 | 3_2:+66201323 | Msa0418450:CDS |
| AATAAATGATGTGAAGTGAT+TGG | 0.502780 | 3_2:+66204144 | Msa0418450:three_prime_UTR |
| GTATTCCCTTGCCTGCGTGC+AGG | 0.504172 | 3_2:+66201753 | Msa0418450:CDS |
| AGAAACAGTAGCATCTCTAG+AGG | 0.506795 | 3_2:+66200388 | Msa0418450:five_prime_UTR |
| TGAATGATAAAGGCGTTGCC+TGG | 0.508431 | 3_2:-66200750 | None:intergenic |
| TAGAGCACCTGCTGCATCAC+CGG | 0.510676 | 3_2:+66200722 | Msa0418450:intron |
| AGTTAAATGTTGTGGCTCCA+TGG | 0.510694 | 3_2:+66202809 | Msa0418450:CDS |
| GAATCCATCGATTCGCGAAG+TGG | 0.511909 | 3_2:-66203818 | None:intergenic |
| AGTTAGTGTATGCTGGAAGA+TGG | 0.513144 | 3_2:+66203789 | Msa0418450:CDS |
| GTTAGTCGTGAAGGATTTGA+AGG | 0.514713 | 3_2:+66201710 | Msa0418450:CDS |
| ATTGCACCTGCACGCAGGCA+AGG | 0.515767 | 3_2:-66201759 | None:intergenic |
| AATATGCATATACCTCAGCC+AGG | 0.516620 | 3_2:-66201341 | None:intergenic |
| TTGCACCTGCACGCAGGCAA+GGG | 0.517987 | 3_2:-66201758 | None:intergenic |
| GCTCGTTTGGAGCATCCTCT+GGG | 0.518543 | 3_2:-66203182 | None:intergenic |
| TACAATCATGCTGATGCTGT+TGG | 0.521896 | 3_2:+66203980 | Msa0418450:CDS |
| TGGAATAGGCCGTGTCGACT+TGG | 0.524552 | 3_2:+66203616 | Msa0418450:CDS |
| ATTGGAAGGTTTAGAAGAGA+AGG | 0.525282 | 3_2:+66201665 | Msa0418450:CDS |
| GTTGTTCTGGCTTATAGTGG+TGG | 0.525983 | 3_2:+66201295 | Msa0418450:CDS |
| GTGGATATTGCCAATGAAGT+TGG | 0.528679 | 3_2:+66202615 | Msa0418450:CDS |
| ATACCTCTTGCATGTTTGGT+AGG | 0.530313 | 3_2:-66200530 | None:intergenic |
| AAGGTTGTTCTGGCTTATAG+TGG | 0.530508 | 3_2:+66201292 | Msa0418450:CDS |
| GTAATATCCCACTCCCTCCA+TGG | 0.530801 | 3_2:-66202826 | None:intergenic |
| GGAGCTGATGCTGTCTCCCA+TGG | 0.531705 | 3_2:+66202636 | Msa0418450:CDS |
| GACTAACTGAGAAGCTCCGC+TGG | 0.532858 | 3_2:-66201694 | None:intergenic |
| TATGAGAGGAAGTATTTGCT+CGG | 0.533964 | 3_2:+66201783 | Msa0418450:CDS |
| ACAATCATGCTGATGCTGTT+GGG | 0.534657 | 3_2:+66203981 | Msa0418450:CDS |
| CGGTTGTTGTCCCCTGGCTG+AGG | 0.535155 | 3_2:+66201329 | Msa0418450:CDS |
| TTCCTTTCCCTGTACAACCA+TGG | 0.535229 | 3_2:-66202653 | None:intergenic |
| TCCCATGGTTGTACAGGGAA+AGG | 0.539361 | 3_2:+66202651 | Msa0418450:CDS |
| AATCCATATATAGTAGGGAC+AGG | 0.540052 | 3_2:+66202911 | Msa0418450:CDS |
| AGCTTCTCAGTTAGTCGTGA+AGG | 0.542860 | 3_2:+66201701 | Msa0418450:CDS |
| CGAGGAGTTTACGAAACTCC+AGG | 0.546528 | 3_2:+66203668 | Msa0418450:CDS |
| AGTCGTGAAGGATTTGAAGG+AGG | 0.547776 | 3_2:+66201713 | Msa0418450:CDS |
| TAAAGGTAGTGCTTCTGTGA+CGG | 0.549158 | 3_2:+66203895 | Msa0418450:CDS |
| GATATTTCTTCATTTGAGAG+TGG | 0.551295 | 3_2:+66203950 | Msa0418450:CDS |
| GGCTCTTCATGCCTACAATA+CGG | 0.561976 | 3_2:-66203646 | None:intergenic |
| GTGAAGAGAATGGTGCCACC+TGG | 0.566636 | 3_2:-66203686 | None:intergenic |
| GGCATTCCAGTATCAGTGAA+CGG | 0.567431 | 3_2:+66203536 | Msa0418450:CDS |
| CTGTCTCCCATGGTTGTACA+GGG | 0.569616 | 3_2:+66202646 | Msa0418450:CDS |
| AATGAGGATCAGAGCCATGA+TGG | 0.575339 | 3_2:+66204027 | Msa0418450:CDS |
| CTGGAGTTTCGTAAACTCCT+CGG | 0.575914 | 3_2:-66203667 | None:intergenic |
| GAATCCCAAGTTAAATGTTG+TGG | 0.576942 | 3_2:+66202801 | Msa0418450:CDS |
| AGCTTTATGGTCTTCCAATG+AGG | 0.578462 | 3_2:+66204011 | Msa0418450:CDS |
| CCTCATGAGTTATGTGCCAA+AGG | 0.582533 | 3_2:-66202936 | None:intergenic |
| AACGGGAAGAGACTTTCTCC+AGG | 0.583209 | 3_2:+66203554 | Msa0418450:CDS |
| GGAGCCACAACATTTAACTT+GGG | 0.583839 | 3_2:-66202805 | None:intergenic |
| CATAAATTGCACCTGCACGC+AGG | 0.585164 | 3_2:-66201764 | None:intergenic |
| TGCTAAGAAGCATAACGTAC+CGG | 0.586709 | 3_2:+66202873 | Msa0418450:CDS |
| AAATGTTGTGGCTCCATGGA+GGG | 0.588551 | 3_2:+66202813 | Msa0418450:CDS |
| AGCTCGCCCTGTAATTGCAA+AGG | 0.595419 | 3_2:+66201815 | Msa0418450:CDS |
| ATTGTACCTTTGCAATTACA+GGG | 0.595573 | 3_2:-66201821 | None:intergenic |
| AATGAGATAGGTGGAAGGCA+TGG | 0.596201 | 3_2:+66203596 | Msa0418450:CDS |
| AGAGATTTCTGAGACCAAGA+AGG | 0.598640 | 3_2:+66201243 | Msa0418450:CDS |
| TCTTGCTGCAGTGAAGAGAA+TGG | 0.602817 | 3_2:-66203696 | None:intergenic |
| ATCAGAGCCATGATGGAACA+AGG | 0.603309 | 3_2:+66204034 | Msa0418450:CDS |
| GAAACAGTAGCATCTCTAGA+GGG | 0.606612 | 3_2:+66200389 | Msa0418450:five_prime_UTR |
| TAGGAGCAATAGCAATAACT+GGG | 0.610995 | 3_2:-66200511 | None:intergenic |
| ACTGACTTGACAGGCTATGG+TGG | 0.612505 | 3_2:+66202596 | Msa0418450:intron |
| AACGCCTTTATCATTCAAAG+AGG | 0.614121 | 3_2:+66200756 | Msa0418450:CDS |
| GTAGTGCTTCTGTGACGGGT+CGG | 0.618058 | 3_2:+66203900 | Msa0418450:CDS |
| TGTGGCTCCATGGAGGGAGT+GGG | 0.626032 | 3_2:+66202819 | Msa0418450:CDS |
| GCTCCTACCAAACATGCAAG+AGG | 0.634689 | 3_2:+66200527 | Msa0418450:CDS |
| GGTGCTGCAAGTAAACCTCA+AGG | 0.648225 | 3_2:+66200963 | Msa0418450:CDS |
| AGCTGAATGAGATAGGTGGA+AGG | 0.657500 | 3_2:+66203591 | Msa0418450:CDS |
| ATATGCATATACCTCAGCCA+GGG | 0.663707 | 3_2:-66201340 | None:intergenic |
| GAAGAGAAGGCAAAAGCCAG+CGG | 0.667966 | 3_2:+66201678 | Msa0418450:CDS |
| GGTCTTCAACCAAGTCGACA+CGG | 0.670749 | 3_2:-66203625 | None:intergenic |
| ATTGTAGGCATGAAGAGCCG+AGG | 0.671284 | 3_2:+66203650 | Msa0418450:CDS |
| TAGTGGTGGCTTAGACACAT+CGG | 0.675543 | 3_2:+66201309 | Msa0418450:CDS |
| GTGCAGGTGCAATTTATGAG+AGG | 0.680391 | 3_2:+66201769 | Msa0418450:CDS |
| CCTTTGGCACATAACTCATG+AGG | 0.680674 | 3_2:+66202936 | Msa0418450:CDS |
| TAAATGTTGTGGCTCCATGG+AGG | 0.686850 | 3_2:+66202812 | Msa0418450:CDS |
| GGAGGGAGTGGGATATTACA+GGG | 0.688013 | 3_2:+66202830 | Msa0418450:CDS |
| TATGCATATACCTCAGCCAG+GGG | 0.712359 | 3_2:-66201339 | None:intergenic |
| GCTGAGCTGAATGAGATAGG+TGG | 0.717992 | 3_2:+66203587 | Msa0418450:CDS |
| AGGAGCAATAGCAATAACTG+GGG | 0.751488 | 3_2:-66200510 | None:intergenic |
| CATGTTGACTGCAGACCCAG+AGG | 0.770433 | 3_2:+66203167 | Msa0418450:CDS |
| GGAGTTTACGAAACTCCAGG+TGG | 0.771741 | 3_2:+66203671 | Msa0418450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATAGATATCAAAA+TGG | - | chr3_2:66202307-66202326 | None:intergenic | 10.0% |
| !! | ATGTATTATTAATTACTATT+AGG | + | chr3_2:66202686-66202705 | Msa0418450:intron | 10.0% |
| !! | TGTTATATTTATAATTGTTA+AGG | + | chr3_2:66202750-66202769 | Msa0418450:intron | 10.0% |
| !!! | AATGTTTTAATTTGTATTAA+TGG | - | chr3_2:66203431-66203450 | None:intergenic | 10.0% |
| !! | AAATACTAAAATTCAAACAA+TGG | - | chr3_2:66200827-66200846 | None:intergenic | 15.0% |
| !! | TATTTATAATTGTTAAGGTT+CGG | + | chr3_2:66202755-66202774 | Msa0418450:intron | 15.0% |
| !! | ATATTCTGCAAAAACTAATA+TGG | + | chr3_2:66200457-66200476 | Msa0418450:exon | 20.0% |
| !!! | CAATTTTCTCAAATGATTAT+TGG | - | chr3_2:66201076-66201095 | None:intergenic | 20.0% |
| !!! | TTTAAGTTTAATGTCTCTAA+CGG | + | chr3_2:66201171-66201190 | Msa0418450:intron | 20.0% |
| !! | ACTAAAAGGTAAATTGAATA+AGG | + | chr3_2:66201273-66201292 | Msa0418450:CDS | 20.0% |
| !! | TAAATTGTGAGAATATGAAA+AGG | - | chr3_2:66201380-66201399 | None:intergenic | 20.0% |
| !! | AGACTAATTGTCATATTTAT+GGG | - | chr3_2:66201510-66201529 | None:intergenic | 20.0% |
| !!! | TAACAAATGCAAATTTTCTT+AGG | + | chr3_2:66201632-66201651 | Msa0418450:intron | 20.0% |
| !!! | AACAAATGCAAATTTTCTTA+GGG | + | chr3_2:66201633-66201652 | Msa0418450:intron | 20.0% |
| !!! | TTTTATAGATATCAAAATGG+AGG | - | chr3_2:66202304-66202323 | None:intergenic | 20.0% |
| !! | GATTCTTGTAAAATATGAAA+AGG | - | chr3_2:66202437-66202456 | None:intergenic | 20.0% |
| !! | GAAAATAGAAATGTGAAATT+TGG | - | chr3_2:66202491-66202510 | None:intergenic | 20.0% |
| !! | AAATAATTGGCATGATTAAT+TGG | - | chr3_2:66202720-66202739 | None:intergenic | 20.0% |
| !! | CAAAAAATCCATATATAGTA+GGG | + | chr3_2:66202906-66202925 | Msa0418450:CDS | 20.0% |
| !!! | TATAGTCATGTTTTTTAAAG+AGG | + | chr3_2:66203235-66203254 | Msa0418450:intron | 20.0% |
| !!! | TTAATTTGTATTAATGGTTG+TGG | - | chr3_2:66203425-66203444 | None:intergenic | 20.0% |
| ! | TCCAAACAACCATAATAAAA+AGG | + | chr3_2:66200412-66200431 | Msa0418450:five_prime_UTR | 25.0% |
| !! | ACCTTTTTATTATGGTTGTT+TGG | - | chr3_2:66200416-66200435 | None:intergenic | 25.0% |
| ! | AAACAACCATAATAAAAAGG+TGG | + | chr3_2:66200415-66200434 | Msa0418450:five_prime_UTR | 25.0% |
| ! | AAAAAATCATAGATAGAGCT+AGG | - | chr3_2:66200575-66200594 | None:intergenic | 25.0% |
| ! | AAACATAGTAAACAACAGTT+AGG | - | chr3_2:66200694-66200713 | None:intergenic | 25.0% |
| !!! | GCATGTTTGTGTATTTTTAA+GGG | - | chr3_2:66200784-66200803 | None:intergenic | 25.0% |
| !!! | TGCATGTTTGTGTATTTTTA+AGG | - | chr3_2:66200785-66200804 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTTTTGCATGTTT+TGG | + | chr3_2:66200899-66200918 | Msa0418450:intron | 25.0% |
| ! | TAAATTGAATAAGGTTGTTC+TGG | + | chr3_2:66201282-66201301 | Msa0418450:CDS | 25.0% |
| ! | TTATATTTCAGAGAGAACTA+TGG | + | chr3_2:66201432-66201451 | Msa0418450:intron | 25.0% |
| ! | GAGACTAATTGTCATATTTA+TGG | - | chr3_2:66201511-66201530 | None:intergenic | 25.0% |
| !! | ACAAATGCAAATTTTCTTAG+GGG | + | chr3_2:66201634-66201653 | Msa0418450:intron | 25.0% |
| ! | AAAACAATCACAAAGCATAA+GGG | - | chr3_2:66201896-66201915 | None:intergenic | 25.0% |
| ! | AAAAACAATCACAAAGCATA+AGG | - | chr3_2:66201897-66201916 | None:intergenic | 25.0% |
| !! | CTCTACAAAATTGACTTATA+AGG | - | chr3_2:66202107-66202126 | None:intergenic | 25.0% |
| ! | CTCATAATTAGTTCATTCTA+AGG | + | chr3_2:66202347-66202366 | Msa0418450:intron | 25.0% |
| !! | ATATGAAAAGGTATACTAAG+AGG | - | chr3_2:66202425-66202444 | None:intergenic | 25.0% |
| ! | ACACGTTAGAAGAAAATAAT+TGG | - | chr3_2:66202733-66202752 | None:intergenic | 25.0% |
| !!! | TATATGGATTTTTTGGTTAC+AGG | - | chr3_2:66202901-66202920 | None:intergenic | 25.0% |
| !!! | CCTACTATATATGGATTTTT+TGG | - | chr3_2:66202908-66202927 | None:intergenic | 25.0% |
| ! | CCAAAAAATCCATATATAGT+AGG | + | chr3_2:66202905-66202924 | Msa0418450:CDS | 25.0% |
| ! | CAAATCATAAAGCATAGTAA+TGG | - | chr3_2:66203011-66203030 | None:intergenic | 25.0% |
| !! | TTTGAACGTGATTTTAAATG+AGG | - | chr3_2:66203054-66203073 | None:intergenic | 25.0% |
| !! | AACATGTACATATCCTTTTT+AGG | - | chr3_2:66203153-66203172 | None:intergenic | 25.0% |
| ! | ATATTTGAATGCGATTATCA+AGG | + | chr3_2:66203293-66203312 | Msa0418450:intron | 25.0% |
| ! | AGAGTCCTTATAGTTTATAT+AGG | + | chr3_2:66203924-66203943 | Msa0418450:CDS | 25.0% |
| ! | GAGTCCTTATAGTTTATATA+GGG | + | chr3_2:66203925-66203944 | Msa0418450:CDS | 25.0% |
| ! | TCTTCCCTATATAAACTATA+AGG | - | chr3_2:66203932-66203951 | None:intergenic | 25.0% |
| !!! | CATTTAAATGTTGCTTTGTT+TGG | + | chr3_2:66204057-66204076 | Msa0418450:exon | 25.0% |
| !! | TTGTGGAACTTTTATTATTG+TGG | + | chr3_2:66204119-66204138 | Msa0418450:three_prime_UTR | 25.0% |
| !! | TGTGGAACTTTTATTATTGT+GGG | + | chr3_2:66204120-66204139 | Msa0418450:three_prime_UTR | 25.0% |
| ! | AATAAATGATGTGAAGTGAT+TGG | + | chr3_2:66204144-66204163 | Msa0418450:three_prime_UTR | 25.0% |
| TATAATACCTCTTGCATGTT+TGG | - | chr3_2:66200537-66200556 | None:intergenic | 30.0% | |
| ATAGTAAACAACAGTTAGGA+GGG | - | chr3_2:66200690-66200709 | None:intergenic | 30.0% | |
| !!! | TGGATGTTTTATTTGTCTGA+TGG | + | chr3_2:66200877-66200896 | Msa0418450:intron | 30.0% |
| AACATAACACTGAACATATC+TGG | - | chr3_2:66201136-66201155 | None:intergenic | 30.0% | |
| ! | CACTTTAGAAACTGAATTGA+CGG | + | chr3_2:66201577-66201596 | Msa0418450:intron | 30.0% |
| TACTTTAATTGCTGCATGTT+TGG | + | chr3_2:66201608-66201627 | Msa0418450:intron | 30.0% | |
| ! | CAAATGCAAATTTTCTTAGG+GGG | + | chr3_2:66201635-66201654 | Msa0418450:intron | 30.0% |
| ! | ATTTGAAGGAGGAATTTGTT+AGG | + | chr3_2:66201724-66201743 | Msa0418450:CDS | 30.0% |
| !! | TTTGAAGGAGGAATTTGTTA+GGG | + | chr3_2:66201725-66201744 | Msa0418450:CDS | 30.0% |
| ATTGTACCTTTGCAATTACA+GGG | - | chr3_2:66201824-66201843 | None:intergenic | 30.0% | |
| AATTGTACCTTTGCAATTAC+AGG | - | chr3_2:66201825-66201844 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCAGTAGCTGAGT+CGG | + | chr3_2:66201944-66201963 | Msa0418450:intron | 30.0% |
| CAATTAAAGCAAAGTTTCAC+TGG | - | chr3_2:66202228-66202247 | None:intergenic | 30.0% | |
| !! | TGCTTTATGATTTGTTGTCA+CGG | + | chr3_2:66203017-66203036 | Msa0418450:intron | 30.0% |
| TTTCCAATATGTGACAATGA+AGG | + | chr3_2:66203098-66203117 | Msa0418450:intron | 30.0% | |
| TTCCAATATGTGACAATGAA+GGG | + | chr3_2:66203099-66203118 | Msa0418450:intron | 30.0% | |
| TTTGATATCACTAAGAAGCA+CGG | - | chr3_2:66203389-66203408 | None:intergenic | 30.0% | |
| ! | GTTTAGTTTCACTACTTACT+TGG | + | chr3_2:66203474-66203493 | Msa0418450:intron | 30.0% |
| ! | GTGAGTTTGAAACTGTATAA+AGG | + | chr3_2:66203878-66203897 | Msa0418450:CDS | 30.0% |
| GATATTTCTTCATTTGAGAG+TGG | + | chr3_2:66203950-66203969 | Msa0418450:CDS | 30.0% | |
| GTTGGGTTTATAAAGCTTTA+TGG | + | chr3_2:66203998-66204017 | Msa0418450:CDS | 30.0% | |
| ! | CACTCACCACCTTTTTATTA+TGG | - | chr3_2:66200424-66200443 | None:intergenic | 35.0% |
| TAGGAGCAATAGCAATAACT+GGG | - | chr3_2:66200514-66200533 | None:intergenic | 35.0% | |
| CATAGTAAACAACAGTTAGG+AGG | - | chr3_2:66200691-66200710 | None:intergenic | 35.0% | |
| AACGCCTTTATCATTCAAAG+AGG | + | chr3_2:66200756-66200775 | Msa0418450:CDS | 35.0% | |
| AATACACAAACATGCATGCA+TGG | + | chr3_2:66200789-66200808 | Msa0418450:intron | 35.0% | |
| !! | TGATATGCATGTGCTTTTTG+TGG | + | chr3_2:66200857-66200876 | Msa0418450:intron | 35.0% |
| ! | TTGAGTCCAAGAAGAAGTTT+TGG | + | chr3_2:66200942-66200961 | Msa0418450:CDS | 35.0% |
| TGGGCAGATTATAACATACT+TGG | - | chr3_2:66201491-66201510 | None:intergenic | 35.0% | |
| ATTGGAAGGTTTAGAAGAGA+AGG | + | chr3_2:66201665-66201684 | Msa0418450:CDS | 35.0% | |
| !! | TATGAGAGGAAGTATTTGCT+CGG | + | chr3_2:66201783-66201802 | Msa0418450:CDS | 35.0% |
| CTGCAATATGAGACTCTTAA+CGG | - | chr3_2:66202044-66202063 | None:intergenic | 35.0% | |
| AGAGTTATTGTTCATGTTCC+AGG | + | chr3_2:66202123-66202142 | Msa0418450:intron | 35.0% | |
| CTAATACCATCTTAGCAGAT+GGG | - | chr3_2:66202160-66202179 | None:intergenic | 35.0% | |
| TCTAATACCATCTTAGCAGA+TGG | - | chr3_2:66202161-66202180 | None:intergenic | 35.0% | |
| GTATTTACAAGACCTGTTGT+TGG | + | chr3_2:66202181-66202200 | Msa0418450:intron | 35.0% | |
| GAGGTTCTTAGAATTTGAGT+TGG | - | chr3_2:66202285-66202304 | None:intergenic | 35.0% | |
| TTTAGATCCTACCTTTCCTT+AGG | + | chr3_2:66202381-66202400 | Msa0418450:intron | 35.0% | |
| GTATACTAAGAGGTAACACA+TGG | - | chr3_2:66202415-66202434 | None:intergenic | 35.0% | |
| ATGCAATACCAGTAAAGATC+CGG | - | chr3_2:66202548-66202567 | None:intergenic | 35.0% | |
| GAATCCCAAGTTAAATGTTG+TGG | + | chr3_2:66202801-66202820 | Msa0418450:CDS | 35.0% | |
| !!! | GATTTTTTGGTTACAGGAAC+CGG | - | chr3_2:66202895-66202914 | None:intergenic | 35.0% |
| AATCCATATATAGTAGGGAC+AGG | + | chr3_2:66202911-66202930 | Msa0418450:CDS | 35.0% | |
| TCCAGCAAATGAACCTAAAA+AGG | + | chr3_2:66203137-66203156 | Msa0418450:CDS | 35.0% | |
| !!! | TCCTTTTTAGGTTCATTTGC+TGG | - | chr3_2:66203141-66203160 | None:intergenic | 35.0% |
| CATTAACAACATGCTTACTC+TGG | - | chr3_2:66203207-66203226 | None:intergenic | 35.0% | |
| TTAAAGAGGCCCATAAGTTA+TGG | + | chr3_2:66203249-66203268 | Msa0418450:intron | 35.0% | |
| TAAAGAGGCCCATAAGTTAT+GGG | + | chr3_2:66203250-66203269 | Msa0418450:intron | 35.0% | |
| TATGACTAATGATGCCTCAA+TGG | - | chr3_2:66203276-66203295 | None:intergenic | 35.0% | |
| TGTCACAGATATGTAGAGAT+TGG | + | chr3_2:66203503-66203522 | Msa0418450:intron | 35.0% | |
| ! | TTAAATGCCTTGTTCCATCA+TGG | - | chr3_2:66204044-66204063 | None:intergenic | 35.0% |
| CTTGTTCTTGACAATGTTTG+TGG | + | chr3_2:66204102-66204121 | Msa0418450:three_prime_UTR | 35.0% | |
| AGAAACAGTAGCATCTCTAG+AGG | + | chr3_2:66200388-66200407 | Msa0418450:five_prime_UTR | 40.0% | |
| GAAACAGTAGCATCTCTAGA+GGG | + | chr3_2:66200389-66200408 | Msa0418450:five_prime_UTR | 40.0% | |
| AGGAGCAATAGCAATAACTG+GGG | - | chr3_2:66200513-66200532 | None:intergenic | 40.0% | |
| GTAGGAGCAATAGCAATAAC+TGG | - | chr3_2:66200515-66200534 | None:intergenic | 40.0% | |
| ATACCTCTTGCATGTTTGGT+AGG | - | chr3_2:66200533-66200552 | None:intergenic | 40.0% | |
| GGCACCTCTTTGAATGATAA+AGG | - | chr3_2:66200763-66200782 | None:intergenic | 40.0% | |
| AACCTCAAGGTGAGATTGTT+TGG | + | chr3_2:66200976-66200995 | Msa0418450:intron | 40.0% | |
| TGGTGTATGACACTAACACA+TGG | - | chr3_2:66201116-66201135 | None:intergenic | 40.0% | |
| !! | AGAGATTTCTGAGACCAAGA+AGG | + | chr3_2:66201243-66201262 | Msa0418450:CDS | 40.0% |
| ! | TTTTAGTCCAGCAACCTTCT+TGG | - | chr3_2:66201260-66201279 | None:intergenic | 40.0% |
| AAGAAGGTTGCTGGACTAAA+AGG | + | chr3_2:66201259-66201278 | Msa0418450:CDS | 40.0% | |
| !! | AAGGTTGTTCTGGCTTATAG+TGG | + | chr3_2:66201292-66201311 | Msa0418450:CDS | 40.0% |
| ATATGCATATACCTCAGCCA+GGG | - | chr3_2:66201343-66201362 | None:intergenic | 40.0% | |
| AATATGCATATACCTCAGCC+AGG | - | chr3_2:66201344-66201363 | None:intergenic | 40.0% | |
| GTTAGTCGTGAAGGATTTGA+AGG | + | chr3_2:66201710-66201729 | Msa0418450:CDS | 40.0% | |
| ! | GCAAAGGTACAATTCTGCTT+TGG | + | chr3_2:66201831-66201850 | Msa0418450:intron | 40.0% |
| AGCTATGTAGAAGTTGAGTG+GGG | - | chr3_2:66202016-66202035 | None:intergenic | 40.0% | |
| GAGCTATGTAGAAGTTGAGT+GGG | - | chr3_2:66202017-66202036 | None:intergenic | 40.0% | |
| TGAGCTATGTAGAAGTTGAG+TGG | - | chr3_2:66202018-66202037 | None:intergenic | 40.0% | |
| CAATATGAGACTCTTAACGG+AGG | - | chr3_2:66202041-66202060 | None:intergenic | 40.0% | |
| CGTTAAGAGTCTCATATTGC+AGG | + | chr3_2:66202042-66202061 | Msa0418450:intron | 40.0% | |
| TTATTGTTCATGTTCCAGGC+AGG | + | chr3_2:66202127-66202146 | Msa0418450:intron | 40.0% | |
| TATTGTTCATGTTCCAGGCA+GGG | + | chr3_2:66202128-66202147 | Msa0418450:intron | 40.0% | |
| CACTGGAGAGTGAACTATTT+GGG | - | chr3_2:66202211-66202230 | None:intergenic | 40.0% | |
| TCACTGGAGAGTGAACTATT+TGG | - | chr3_2:66202212-66202231 | None:intergenic | 40.0% | |
| CTCAACCCTACAAAACCATA+TGG | - | chr3_2:66202256-66202275 | None:intergenic | 40.0% | |
| !!! | ATGGTTTTGTAGGGTTGAGT+TGG | + | chr3_2:66202257-66202276 | Msa0418450:intron | 40.0% |
| ! | GAAAGGTAGGATCTAAAGCT+AGG | - | chr3_2:66202378-66202397 | None:intergenic | 40.0% |
| ACACGGATGTTGAGAACAAA+TGG | - | chr3_2:66202516-66202535 | None:intergenic | 40.0% | |
| !! | TTGATGTCTACTGACTTGAC+AGG | + | chr3_2:66202587-66202606 | Msa0418450:intron | 40.0% |
| GTGGATATTGCCAATGAAGT+TGG | + | chr3_2:66202615-66202634 | Msa0418450:CDS | 40.0% | |
| TACAGGGAAAGGAAATGATC+AGG | + | chr3_2:66202662-66202681 | Msa0418450:CDS | 40.0% | |
| CTTGGGATTCAGAGCAAAAA+AGG | - | chr3_2:66202791-66202810 | None:intergenic | 40.0% | |
| ! | GGAGCCACAACATTTAACTT+GGG | - | chr3_2:66202808-66202827 | None:intergenic | 40.0% |
| TGGAGCCACAACATTTAACT+TGG | - | chr3_2:66202809-66202828 | None:intergenic | 40.0% | |
| AGTTAAATGTTGTGGCTCCA+TGG | + | chr3_2:66202809-66202828 | Msa0418450:CDS | 40.0% | |
| ! | TGCTAAGAAGCATAACGTAC+CGG | + | chr3_2:66202873-66202892 | Msa0418450:CDS | 40.0% |
| GTTCCTGTCCCTACTATATA+TGG | - | chr3_2:66202917-66202936 | None:intergenic | 40.0% | |
| CACCCTTCATTGTCACATAT+TGG | - | chr3_2:66203104-66203123 | None:intergenic | 40.0% | |
| ! | GACAATGAAGGGTGATGTTT+TGG | + | chr3_2:66203110-66203129 | Msa0418450:intron | 40.0% |
| CTCAATGGCCCATAACTTAT+GGG | - | chr3_2:66203261-66203280 | None:intergenic | 40.0% | |
| GATTATCAAGGATCGCAACA+TGG | + | chr3_2:66203305-66203324 | Msa0418450:intron | 40.0% | |
| GTAGAGATTGGATTTGAGTC+AGG | + | chr3_2:66203515-66203534 | Msa0418450:CDS | 40.0% | |
| GAGACTTTCTCCAGGAAATT+TGG | + | chr3_2:66203562-66203581 | Msa0418450:CDS | 40.0% | |
| TTGGTTGAAGACCGTATTGT+AGG | + | chr3_2:66203635-66203654 | Msa0418450:CDS | 40.0% | |
| TTTGCAGAGTTAGTGTATGC+TGG | + | chr3_2:66203782-66203801 | Msa0418450:CDS | 40.0% | |
| AGTTAGTGTATGCTGGAAGA+TGG | + | chr3_2:66203789-66203808 | Msa0418450:CDS | 40.0% | |
| ! | CGAATCGATGGATTCATTCA+TGG | + | chr3_2:66203826-66203845 | Msa0418450:CDS | 40.0% |
| AAGATCTCACAGACTACAAC+AGG | + | chr3_2:66203851-66203870 | Msa0418450:CDS | 40.0% | |
| TAAAGGTAGTGCTTCTGTGA+CGG | + | chr3_2:66203895-66203914 | Msa0418450:CDS | 40.0% | |
| TACAATCATGCTGATGCTGT+TGG | + | chr3_2:66203980-66203999 | Msa0418450:CDS | 40.0% | |
| ACAATCATGCTGATGCTGTT+GGG | + | chr3_2:66203981-66204000 | Msa0418450:CDS | 40.0% | |
| ! | AGCTTTATGGTCTTCCAATG+AGG | + | chr3_2:66204011-66204030 | Msa0418450:CDS | 40.0% |
| ! | GAGGGTGCAGATAGCAAAAT+TGG | - | chr3_2:66200672-66200691 | None:intergenic | 45.0% |
| !! | TGAATGATAAAGGCGTTGCC+TGG | - | chr3_2:66200753-66200772 | None:intergenic | 45.0% |
| GCAGCACCAAAACTTCTTCT+TGG | - | chr3_2:66200951-66200970 | None:intergenic | 45.0% | |
| AGCCAAACAATCTCACCTTG+AGG | - | chr3_2:66200981-66201000 | None:intergenic | 45.0% | |
| ! | TGAAGTACCAACACAGACAC+TGG | + | chr3_2:66201028-66201047 | Msa0418450:intron | 45.0% |
| !! | GTTGTTCTGGCTTATAGTGG+TGG | + | chr3_2:66201295-66201314 | Msa0418450:CDS | 45.0% |
| TAGTGGTGGCTTAGACACAT+CGG | + | chr3_2:66201309-66201328 | Msa0418450:CDS | 45.0% | |
| TATGCATATACCTCAGCCAG+GGG | - | chr3_2:66201342-66201361 | None:intergenic | 45.0% | |
| GTTTGCTTCACAGCTGATCT+AGG | + | chr3_2:66201465-66201484 | Msa0418450:CDS | 45.0% | |
| TTCTTAGGGGGCAAGTGAAT+TGG | + | chr3_2:66201647-66201666 | Msa0418450:intron | 45.0% | |
| AGCTTCTCAGTTAGTCGTGA+AGG | + | chr3_2:66201701-66201720 | Msa0418450:CDS | 45.0% | |
| AGTCGTGAAGGATTTGAAGG+AGG | + | chr3_2:66201713-66201732 | Msa0418450:CDS | 45.0% | |
| GTGCAGGTGCAATTTATGAG+AGG | + | chr3_2:66201769-66201788 | Msa0418450:CDS | 45.0% | |
| GTCTGTATGACCTTACCCTT+GGG | - | chr3_2:66201970-66201989 | None:intergenic | 45.0% | |
| TGTCTGTATGACCTTACCCT+TGG | - | chr3_2:66201971-66201990 | None:intergenic | 45.0% | |
| ATGTAGAAGTTGAGTGGGGT+GGG | - | chr3_2:66202012-66202031 | None:intergenic | 45.0% | |
| TATGTAGAAGTTGAGTGGGG+TGG | - | chr3_2:66202013-66202032 | None:intergenic | 45.0% | |
| GCAGGAGATCTAGTCTGAAA+AGG | + | chr3_2:66202060-66202079 | Msa0418450:intron | 45.0% | |
| TATTTGGGAAGGCCAACAAC+AGG | - | chr3_2:66202196-66202215 | None:intergenic | 45.0% | |
| GGAGAGTGAACTATTTGGGA+AGG | - | chr3_2:66202207-66202226 | None:intergenic | 45.0% | |
| GCTTTAATTGCAGCGCCATA+TGG | + | chr3_2:66202238-66202257 | Msa0418450:intron | 45.0% | |
| !!! | CAGCGCCATATGGTTTTGTA+GGG | + | chr3_2:66202248-66202267 | Msa0418450:intron | 45.0% |
| ! | GTAGGATCTAAAGCTAGGTG+AGG | - | chr3_2:66202373-66202392 | None:intergenic | 45.0% |
| ACATCCGTGTAACCTTGTAC+CGG | + | chr3_2:66202526-66202545 | Msa0418450:intron | 45.0% | |
| AGATCCGGTACAAGGTTACA+CGG | - | chr3_2:66202533-66202552 | None:intergenic | 45.0% | |
| ACCTTGTACCGGATCTTTAC+TGG | + | chr3_2:66202537-66202556 | Msa0418450:intron | 45.0% | |
| ACCAGTAAAGATCCGGTACA+AGG | - | chr3_2:66202541-66202560 | None:intergenic | 45.0% | |
| !! | TCTACTGACTTGACAGGCTA+TGG | + | chr3_2:66202593-66202612 | Msa0418450:intron | 45.0% |
| AGCATCAGCTCCAACTTCAT+TGG | - | chr3_2:66202628-66202647 | None:intergenic | 45.0% | |
| TCCTTTCCCTGTACAACCAT+GGG | - | chr3_2:66202655-66202674 | None:intergenic | 45.0% | |
| TTCCTTTCCCTGTACAACCA+TGG | - | chr3_2:66202656-66202675 | None:intergenic | 45.0% | |
| TAAATGTTGTGGCTCCATGG+AGG | + | chr3_2:66202812-66202831 | Msa0418450:CDS | 45.0% | |
| AAATGTTGTGGCTCCATGGA+GGG | + | chr3_2:66202813-66202832 | Msa0418450:CDS | 45.0% | |
| ATAGTAGGGACAGGAACCTT+TGG | + | chr3_2:66202920-66202939 | Msa0418450:CDS | 45.0% | |
| CCTCATGAGTTATGTGCCAA+AGG | - | chr3_2:66202939-66202958 | None:intergenic | 45.0% | |
| CCTTTGGCACATAACTCATG+AGG | + | chr3_2:66202936-66202955 | Msa0418450:CDS | 45.0% | |
| TGGCACATAACTCATGAGGT+AGG | + | chr3_2:66202940-66202959 | Msa0418450:intron | 45.0% | |
| CCTCAATGGCCCATAACTTA+TGG | - | chr3_2:66203262-66203281 | None:intergenic | 45.0% | |
| CCATAAGTTATGGGCCATTG+AGG | + | chr3_2:66203259-66203278 | Msa0418450:intron | 45.0% | |
| GGCATTCCAGTATCAGTGAA+CGG | + | chr3_2:66203536-66203555 | Msa0418450:CDS | 45.0% | |
| GCATTCCAGTATCAGTGAAC+GGG | + | chr3_2:66203537-66203556 | Msa0418450:CDS | 45.0% | |
| AGCTCAGCAACCAAATTTCC+TGG | - | chr3_2:66203575-66203594 | None:intergenic | 45.0% | |
| GTTGCTGAGCTGAATGAGAT+AGG | + | chr3_2:66203584-66203603 | Msa0418450:CDS | 45.0% | |
| AGCTGAATGAGATAGGTGGA+AGG | + | chr3_2:66203591-66203610 | Msa0418450:CDS | 45.0% | |
| AATGAGATAGGTGGAAGGCA+TGG | + | chr3_2:66203596-66203615 | Msa0418450:CDS | 45.0% | |
| ! | ATAGGTGGAAGGCATGGAAT+AGG | + | chr3_2:66203602-66203621 | Msa0418450:CDS | 45.0% |
| GGCTCTTCATGCCTACAATA+CGG | - | chr3_2:66203649-66203668 | None:intergenic | 45.0% | |
| CTGGAGTTTCGTAAACTCCT+CGG | - | chr3_2:66203670-66203689 | None:intergenic | 45.0% | |
| TCTTGCTGCAGTGAAGAGAA+TGG | - | chr3_2:66203699-66203718 | None:intergenic | 45.0% | |
| AAAGGTAGTGCTTCTGTGAC+GGG | + | chr3_2:66203896-66203915 | Msa0418450:CDS | 45.0% | |
| !! | ATCATGGCTCTGATCCTCAT+TGG | - | chr3_2:66204028-66204047 | None:intergenic | 45.0% |
| AATGAGGATCAGAGCCATGA+TGG | + | chr3_2:66204027-66204046 | Msa0418450:CDS | 45.0% | |
| ! | ATCAGAGCCATGATGGAACA+AGG | + | chr3_2:66204034-66204053 | Msa0418450:CDS | 45.0% |
| GCTCCTACCAAACATGCAAG+AGG | + | chr3_2:66200527-66200546 | Msa0418450:CDS | 50.0% | |
| ! | GGTGCTGCAAGTAAACCTCA+AGG | + | chr3_2:66200963-66200982 | Msa0418450:CDS | 50.0% |
| ! | TCTGAGACCAAGAAGGTTGC+TGG | + | chr3_2:66201250-66201269 | Msa0418450:CDS | 50.0% |
| TAGGGGGCAAGTGAATTGGA+AGG | + | chr3_2:66201651-66201670 | Msa0418450:intron | 50.0% | |
| GAAGAGAAGGCAAAAGCCAG+CGG | + | chr3_2:66201678-66201697 | Msa0418450:CDS | 50.0% | |
| CATAAATTGCACCTGCACGC+AGG | - | chr3_2:66201767-66201786 | None:intergenic | 50.0% | |
| AGCTCGCCCTGTAATTGCAA+AGG | + | chr3_2:66201815-66201834 | Msa0418450:CDS | 50.0% | |
| ACCAAGCCCATCTGCTAAGA+TGG | + | chr3_2:66202151-66202170 | Msa0418450:intron | 50.0% | |
| ! | ACCATCTTAGCAGATGGGCT+TGG | - | chr3_2:66202155-66202174 | None:intergenic | 50.0% |
| !!! | GCAGCGCCATATGGTTTTGT+AGG | + | chr3_2:66202247-66202266 | Msa0418450:intron | 50.0% |
| GATCCTACCTTTCCTTAGGC+AGG | + | chr3_2:66202385-66202404 | Msa0418450:intron | 50.0% | |
| TAGCCTGCCTAAGGAAAGGT+AGG | - | chr3_2:66202391-66202410 | None:intergenic | 50.0% | |
| TGGATAGCCTGCCTAAGGAA+AGG | - | chr3_2:66202395-66202414 | None:intergenic | 50.0% | |
| ACACATGGATAGCCTGCCTA+AGG | - | chr3_2:66202400-66202419 | None:intergenic | 50.0% | |
| !! | ACTGACTTGACAGGCTATGG+TGG | + | chr3_2:66202596-66202615 | Msa0418450:intron | 50.0% |
| CTGTCTCCCATGGTTGTACA+GGG | + | chr3_2:66202646-66202665 | Msa0418450:CDS | 50.0% | |
| TCCCATGGTTGTACAGGGAA+AGG | + | chr3_2:66202651-66202670 | Msa0418450:CDS | 50.0% | |
| GTAATATCCCACTCCCTCCA+TGG | - | chr3_2:66202829-66202848 | None:intergenic | 50.0% | |
| TGGAGGGAGTGGGATATTAC+AGG | + | chr3_2:66202829-66202848 | Msa0418450:CDS | 50.0% | |
| GGAGGGAGTGGGATATTACA+GGG | + | chr3_2:66202830-66202849 | Msa0418450:CDS | 50.0% | |
| ! | CATGCTTACTCTGGCTCGTT+TGG | - | chr3_2:66203198-66203217 | None:intergenic | 50.0% |
| CAACCAGCCTTAACCGTAAC+AGG | + | chr3_2:66203331-66203350 | Msa0418450:intron | 50.0% | |
| CCTTAATCGCGGTCCTGTTA+CGG | - | chr3_2:66203347-66203366 | None:intergenic | 50.0% | |
| AGCTGATGCAGCCTTAATCG+CGG | - | chr3_2:66203358-66203377 | None:intergenic | 50.0% | |
| CTCTTCCCGTTCACTGATAC+TGG | - | chr3_2:66203545-66203564 | None:intergenic | 50.0% | |
| AACGGGAAGAGACTTTCTCC+AGG | + | chr3_2:66203554-66203573 | Msa0418450:CDS | 50.0% | |
| GCTGAGCTGAATGAGATAGG+TGG | + | chr3_2:66203587-66203606 | Msa0418450:CDS | 50.0% | |
| GGTCTTCAACCAAGTCGACA+CGG | - | chr3_2:66203628-66203647 | None:intergenic | 50.0% | |
| ATTGTAGGCATGAAGAGCCG+AGG | + | chr3_2:66203650-66203669 | Msa0418450:CDS | 50.0% | |
| CGAGGAGTTTACGAAACTCC+AGG | + | chr3_2:66203668-66203687 | Msa0418450:CDS | 50.0% | |
| GGAGTTTACGAAACTCCAGG+TGG | + | chr3_2:66203671-66203690 | Msa0418450:CDS | 50.0% | |
| CTTCACTGCAGCAAGAGACT+TGG | + | chr3_2:66203703-66203722 | Msa0418450:CDS | 50.0% | |
| TGATCCACTTCGCGAATCGA+TGG | + | chr3_2:66203814-66203833 | Msa0418450:CDS | 50.0% | |
| !! | GAATCCATCGATTCGCGAAG+TGG | - | chr3_2:66203821-66203840 | None:intergenic | 50.0% |
| ! | TAGAGCACCTGCTGCATCAC+CGG | + | chr3_2:66200722-66200741 | Msa0418450:intron | 55.0% |
| GTCGTGTCCAGTGTCTGTGT+TGG | - | chr3_2:66201038-66201057 | None:intergenic | 55.0% | |
| ! | ACACATCGGTTGTTGTCCCC+TGG | + | chr3_2:66201323-66201342 | Msa0418450:CDS | 55.0% |
| GACTAACTGAGAAGCTCCGC+TGG | - | chr3_2:66201697-66201716 | None:intergenic | 55.0% | |
| !! | AGTTGAGTGGGGTGGGTTAG+AGG | - | chr3_2:66202005-66202024 | None:intergenic | 55.0% |
| GCTGTCTCCCATGGTTGTAC+AGG | + | chr3_2:66202645-66202664 | Msa0418450:CDS | 55.0% | |
| ! | CATGTTGACTGCAGACCCAG+AGG | + | chr3_2:66203167-66203186 | Msa0418450:CDS | 55.0% |
| ! | GCTCGTTTGGAGCATCCTCT+GGG | - | chr3_2:66203185-66203204 | None:intergenic | 55.0% |
| GGTCCTGTTACGGTTAAGGC+TGG | - | chr3_2:66203337-66203356 | None:intergenic | 55.0% | |
| TCGCGGTCCTGTTACGGTTA+AGG | - | chr3_2:66203341-66203360 | None:intergenic | 55.0% | |
| CCGTAACAGGACCGCGATTA+AGG | + | chr3_2:66203344-66203363 | Msa0418450:intron | 55.0% | |
| !! | TGGAATAGGCCGTGTCGACT+TGG | + | chr3_2:66203616-66203635 | Msa0418450:CDS | 55.0% |
| !! | GTGAAGAGAATGGTGCCACC+TGG | - | chr3_2:66203689-66203708 | None:intergenic | 55.0% |
| !! | GTAGTGCTTCTGTGACGGGT+CGG | + | chr3_2:66203900-66203919 | Msa0418450:CDS | 55.0% |
| !! | AAGGCGTTGCCTGGCAGAAC+CGG | - | chr3_2:66200744-66200763 | None:intergenic | 60.0% |
| GTATTCCCTTGCCTGCGTGC+AGG | + | chr3_2:66201753-66201772 | Msa0418450:CDS | 60.0% | |
| TTGCACCTGCACGCAGGCAA+GGG | - | chr3_2:66201761-66201780 | None:intergenic | 60.0% | |
| ATTGCACCTGCACGCAGGCA+AGG | - | chr3_2:66201762-66201781 | None:intergenic | 60.0% | |
| TCAGTAGCTGAGTCGGCCCA+AGG | + | chr3_2:66201951-66201970 | Msa0418450:intron | 60.0% | |
| CAGTAGCTGAGTCGGCCCAA+GGG | + | chr3_2:66201952-66201971 | Msa0418450:intron | 60.0% | |
| GGAGCTGATGCTGTCTCCCA+TGG | + | chr3_2:66202636-66202655 | Msa0418450:CDS | 60.0% | |
| TTGTGGCTCCATGGAGGGAG+TGG | + | chr3_2:66202818-66202837 | Msa0418450:CDS | 60.0% | |
| TGTGGCTCCATGGAGGGAGT+GGG | + | chr3_2:66202819-66202838 | Msa0418450:CDS | 60.0% | |
| ! | GGCTCGTTTGGAGCATCCTC+TGG | - | chr3_2:66203186-66203205 | None:intergenic | 60.0% |
| GGCAGAACCGGTGATGCAGC+AGG | - | chr3_2:66200732-66200751 | None:intergenic | 65.0% | |
| !! | GCTGCATCACCGGTTCTGCC+AGG | + | chr3_2:66200732-66200751 | Msa0418450:CDS | 65.0% |
| CGGTTGTTGTCCCCTGGCTG+AGG | + | chr3_2:66201329-66201348 | Msa0418450:CDS | 65.0% | |
| GCTGAGTCGGCCCAAGGGTA+AGG | + | chr3_2:66201957-66201976 | Msa0418450:intron | 65.0% | |
| ! | AGATGGGCTTGGTCCCTGCC+TGG | - | chr3_2:66202144-66202163 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 66200362 | 66204167 | 66200362 | ID=Msa0418450;Name=Msa0418450 |
| chr3_2 | mRNA | 66200362 | 66204167 | 66200362 | ID=Msa0418450-mRNA-1;Parent=Msa0418450;Name=Msa0418450-mRNA-1;_AED=0.25;_eAED=0.25;_QI=114|1|1|1|1|1|10|104|479 |
| chr3_2 | exon | 66200362 | 66200548 | 66200362 | ID=Msa0418450-mRNA-1:exon:15078;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66200725 | 66200777 | 66200725 | ID=Msa0418450-mRNA-1:exon:15079;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66200942 | 66200984 | 66200942 | ID=Msa0418450-mRNA-1:exon:15080;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66201215 | 66201350 | 66201215 | ID=Msa0418450-mRNA-1:exon:15081;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66201443 | 66201491 | 66201443 | ID=Msa0418450-mRNA-1:exon:15082;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66201654 | 66201836 | 66201654 | ID=Msa0418450-mRNA-1:exon:15083;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66202609 | 66202683 | 66202609 | ID=Msa0418450-mRNA-1:exon:15084;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66202772 | 66202957 | 66202772 | ID=Msa0418450-mRNA-1:exon:15085;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66203120 | 66203208 | 66203120 | ID=Msa0418450-mRNA-1:exon:15086;Parent=Msa0418450-mRNA-1 |
| chr3_2 | exon | 66203511 | 66204167 | 66203511 | ID=Msa0418450-mRNA-1:exon:15087;Parent=Msa0418450-mRNA-1 |
| chr3_2 | five_prime_UTR | 66200362 | 66200475 | 66200362 | ID=Msa0418450-mRNA-1:five_prime_utr;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66200476 | 66200548 | 66200476 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66200725 | 66200777 | 66200725 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66200942 | 66200984 | 66200942 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66201215 | 66201350 | 66201215 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66201443 | 66201491 | 66201443 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66201654 | 66201836 | 66201654 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66202609 | 66202683 | 66202609 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66202772 | 66202957 | 66202772 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66203120 | 66203208 | 66203120 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | CDS | 66203511 | 66204063 | 66203511 | ID=Msa0418450-mRNA-1:cds;Parent=Msa0418450-mRNA-1 |
| chr3_2 | three_prime_UTR | 66204064 | 66204167 | 66204064 | ID=Msa0418450-mRNA-1:three_prime_utr;Parent=Msa0418450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
