Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466930 | RHN69041.1 | 98.444 | 514 | 2 | 3 | 1 | 511 | 1 | 511 | 0.0 | 1031 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466930 | sp|P52417|GLGS2_VICFA | 95.517 | 513 | 17 | 3 | 4 | 511 | 1 | 512 | 0.0 | 954 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466930 | A0A396IWK0 | 98.444 | 514 | 2 | 3 | 1 | 511 | 1 | 511 | 0.0 | 1031 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073820 | Msa0466930 | 0.800459 | 1.426946e-48 | -8.615850e-47 |
| Msa0229320 | Msa0466930 | 0.803892 | 2.805535e-49 | -8.615850e-47 |
| Msa0372090 | Msa0466930 | 0.856684 | 2.724084e-62 | -8.615850e-47 |
| Msa0374070 | Msa0466930 | 0.848703 | 5.177064e-60 | -8.615850e-47 |
| Msa0420700 | Msa0466930 | 0.852806 | 3.624951e-61 | -8.615850e-47 |
| Msa0423250 | Msa0466930 | 0.848021 | 7.989510e-60 | -8.615850e-47 |
| Msa0428510 | Msa0466930 | -0.822483 | 2.312055e-53 | -8.615850e-47 |
| Msa0466730 | Msa0466930 | 0.863399 | 2.559085e-64 | -8.615850e-47 |
| Msa0466930 | Msa0469390 | 0.858370 | 8.629898e-63 | -8.615850e-47 |
| Msa0466930 | Msa0515090 | 0.853825 | 1.849719e-61 | -8.615850e-47 |
| Msa0466930 | Msa0805940 | 0.807270 | 5.485699e-50 | -8.615850e-47 |
| Msa0466930 | Msa0843690 | 0.807090 | 5.989303e-50 | -8.615850e-47 |
| Msa0466930 | Msa1129560 | 0.823247 | 1.535147e-53 | -8.615850e-47 |
| Msa0466930 | Msa1129720 | 0.829423 | 5.190395e-55 | -8.615850e-47 |
| Msa0466930 | Msa1408770 | 0.804740 | 1.868145e-49 | -8.615850e-47 |
| Msa0298940 | Msa0466930 | 0.807801 | 4.231664e-50 | -8.615850e-47 |
| Msa0298970 | Msa0466930 | 0.807119 | 5.905326e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466930 | MtrunA17_Chr3g0120471 | 98.444 | 514 | 2 | 3 | 1 | 511 | 1 | 511 | 0.0 | 1031 |
| Msa0466930 | MtrunA17_Chr5g0447341 | 89.515 | 515 | 50 | 2 | 1 | 511 | 1 | 515 | 0.0 | 906 |
| Msa0466930 | MtrunA17_Chr4g0074531 | 53.861 | 505 | 205 | 9 | 27 | 511 | 25 | 521 | 0.0 | 536 |
| Msa0466930 | MtrunA17_Chr7g0271011 | 56.823 | 447 | 173 | 10 | 82 | 511 | 93 | 536 | 1.01e-180 | 518 |
| Msa0466930 | MtrunA17_Chr3g0141761 | 55.195 | 462 | 183 | 7 | 58 | 511 | 85 | 530 | 1.21e-179 | 515 |
| Msa0466930 | MtrunA17_Chr4g0035171 | 50.207 | 482 | 222 | 8 | 45 | 511 | 50 | 528 | 1.82e-167 | 484 |
| Msa0466930 | MtrunA17_Chr0c30g0494071 | 45.598 | 443 | 174 | 13 | 83 | 511 | 26 | 415 | 7.22e-117 | 350 |
| Msa0466930 | MtrunA17_Chr3g0144741 | 60.241 | 249 | 93 | 4 | 82 | 325 | 84 | 331 | 7.18e-95 | 292 |
| Msa0466930 | MtrunA17_Chr3g0144731 | 50.000 | 152 | 73 | 1 | 363 | 511 | 10 | 161 | 6.14e-47 | 160 |
| Msa0466930 | MtrunA17_Chr4g0077071 | 88.750 | 80 | 6 | 1 | 346 | 422 | 2 | 81 | 2.27e-42 | 145 |
| Msa0466930 | MtrunA17_Chr6g0454161 | 87.273 | 55 | 7 | 0 | 415 | 469 | 121 | 175 | 2.40e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466930 | AT5G48300.1 | 86.260 | 524 | 55 | 6 | 1 | 511 | 1 | 520 | 0.0 | 887 |
| Msa0466930 | AT5G19220.1 | 52.724 | 514 | 224 | 9 | 14 | 511 | 12 | 522 | 0.0 | 538 |
| Msa0466930 | AT1G27680.1 | 57.306 | 438 | 177 | 5 | 82 | 511 | 83 | 518 | 0.0 | 525 |
| Msa0466930 | AT4G39210.2 | 50.647 | 464 | 209 | 7 | 65 | 511 | 61 | 521 | 5.91e-166 | 480 |
| Msa0466930 | AT4G39210.1 | 50.647 | 464 | 209 | 7 | 65 | 511 | 61 | 521 | 5.91e-166 | 480 |
| Msa0466930 | AT2G21590.2 | 52.252 | 444 | 198 | 7 | 76 | 511 | 86 | 523 | 1.41e-163 | 474 |
| Msa0466930 | AT2G21590.3 | 52.252 | 444 | 198 | 7 | 76 | 511 | 86 | 523 | 1.41e-163 | 474 |
| Msa0466930 | AT2G21590.5 | 52.252 | 444 | 198 | 7 | 76 | 511 | 86 | 523 | 1.41e-163 | 474 |
| Msa0466930 | AT2G21590.4 | 52.252 | 444 | 198 | 7 | 76 | 511 | 86 | 523 | 1.41e-163 | 474 |
| Msa0466930 | AT2G21590.7 | 52.252 | 444 | 198 | 7 | 76 | 511 | 86 | 523 | 1.41e-163 | 474 |
| Msa0466930 | AT2G21590.1 | 52.252 | 444 | 198 | 7 | 76 | 511 | 86 | 523 | 1.41e-163 | 474 |
| Msa0466930 | AT2G21590.6 | 52.252 | 444 | 198 | 7 | 76 | 511 | 86 | 523 | 1.41e-163 | 474 |
| Msa0466930 | AT1G05610.1 | 45.148 | 474 | 238 | 7 | 43 | 511 | 20 | 476 | 1.65e-141 | 416 |
| Msa0466930 | AT1G05610.2 | 45.378 | 476 | 240 | 7 | 43 | 511 | 20 | 482 | 2.75e-141 | 416 |
Find 135 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGTTGATACTACTATTT+TGG | 0.118247 | 3_3:+68050250 | Msa0466930:intron |
| ATGCGGTGAGGCAATATTTA+TGG | 0.227198 | 3_3:+68049904 | Msa0466930:CDS |
| TAATGTGATTTGCTTCTTCT+AGG | 0.233733 | 3_3:+68051982 | Msa0466930:three_prime_UTR |
| TATTGAGGACACATTGTTAA+TGG | 0.236148 | 3_3:+68051075 | Msa0466930:CDS |
| CTTATTTATACGATGGATAC+TGG | 0.239223 | 3_3:+68050552 | Msa0466930:CDS |
| GCTTTCAACTGTTCTCCTTT+TGG | 0.240994 | 3_3:-68050134 | None:intergenic |
| AATGCCTTATATTGCTAGTA+TGG | 0.245338 | 3_3:+68050298 | Msa0466930:CDS |
| TTTCTGGTGCACGTTATATT+TGG | 0.248459 | 3_3:+68051765 | Msa0466930:three_prime_UTR |
| GGCTTTCTATAATGCAAATC+TGG | 0.253113 | 3_3:+68050595 | Msa0466930:CDS |
| ACACCTTCCAGCAGTGAAAA+TGG | 0.265690 | 3_3:-68051713 | None:intergenic |
| CTGTTTAGGCAGTTGCTAAC+AGG | 0.290907 | 3_3:-68049605 | None:intergenic |
| GATATCACTGACAGTGTTAT+TGG | 0.317250 | 3_3:+68050823 | Msa0466930:CDS |
| TTCCTGGTGCAAACGACTTC+GGG | 0.322270 | 3_3:+68050372 | Msa0466930:CDS |
| CTTATTACCTGGAACCAGTT+TGG | 0.329824 | 3_3:-68049773 | None:intergenic |
| TTAGAATACTTAGTTCTTGC+TGG | 0.342172 | 3_3:+68049948 | Msa0466930:CDS |
| ATTGAGGACACATTGTTAAT+GGG | 0.348660 | 3_3:+68051076 | Msa0466930:CDS |
| ATTCCTGGTGCAACCGAACT+TGG | 0.354432 | 3_3:+68050404 | Msa0466930:CDS |
| TGAGAATCCAAACTGGTTCC+AGG | 0.364521 | 3_3:+68049766 | Msa0466930:CDS |
| ATTGACAAGAATGCTAGAAT+TGG | 0.372887 | 3_3:+68051304 | Msa0466930:CDS |
| TTTGCCCGCTTCTTGGTCAA+TGG | 0.378602 | 3_3:-68049539 | None:intergenic |
| CTGCTCCGCGACAAGTTTCC+TGG | 0.384999 | 3_3:+68050356 | Msa0466930:CDS |
| GGCAGTGTTCCGATTGGTAT+TGG | 0.386912 | 3_3:+68051253 | Msa0466930:CDS |
| TCTTTGATATGTTACTGTTT+AGG | 0.387072 | 3_3:-68049619 | None:intergenic |
| ACCTCGAAAAGCCATCTATA+TGG | 0.387393 | 3_3:+68048335 | Msa0466930:exon |
| ATACCCATACTAGCAATATA+AGG | 0.403964 | 3_3:-68050302 | None:intergenic |
| CACCTTCCAGCAGTGAAAAT+GGG | 0.408003 | 3_3:-68051712 | None:intergenic |
| GCAAGAATTCTCATATCAAA+AGG | 0.408139 | 3_3:+68051275 | Msa0466930:CDS |
| AGAAGAAGAAGAGAAAACTA+TGG | 0.408222 | 3_3:+68048495 | Msa0466930:CDS |
| TCAATTCAGCATCCTTGAAC+AGG | 0.414585 | 3_3:+68049660 | Msa0466930:CDS |
| ATGATGTAAATTTAATTATC+CGG | 0.421165 | 3_3:+68051826 | Msa0466930:three_prime_UTR |
| TTCGGGAGTGAAGTTATTCC+TGG | 0.424087 | 3_3:+68050389 | Msa0466930:CDS |
| AGCCATCTATATGGCTTCAA+TGG | 0.429672 | 3_3:+68048344 | Msa0466930:exon |
| TGGAACCAGTTTGGATTCTC+AGG | 0.429926 | 3_3:-68049764 | None:intergenic |
| TCTTACTCTCATCCCAAGTT+CGG | 0.430739 | 3_3:-68050417 | None:intergenic |
| GAAGCACGTGCCACTGCATT+CGG | 0.431857 | 3_3:+68050062 | Msa0466930:CDS |
| TCAGCATCAAGCATCTTAGA+TGG | 0.434595 | 3_3:-68050802 | None:intergenic |
| CAACTAACTCTGCTAGCATC+TGG | 0.445818 | 3_3:-68048585 | None:intergenic |
| GCCCTTCATTGTTTCTCCCA+AGG | 0.449571 | 3_3:+68048524 | Msa0466930:CDS |
| GTGCTTGGTATTATACTTGG+AGG | 0.450420 | 3_3:+68049494 | Msa0466930:CDS |
| TACCGAGGTTGGGTGTAGAT+TGG | 0.453915 | 3_3:-68050772 | None:intergenic |
| AGCCATTGAAGCCATATAGA+TGG | 0.460362 | 3_3:-68048346 | None:intergenic |
| AGTGTGCTTGGTATTATACT+TGG | 0.461794 | 3_3:+68049491 | Msa0466930:CDS |
| GCAAAACCAGCTGTTCCTCT+TGG | 0.462674 | 3_3:+68049557 | Msa0466930:CDS |
| CATAATCCATTCGATACAAA+TGG | 0.464442 | 3_3:-68049974 | None:intergenic |
| TTTCCTGGTGCAAACGACTT+CGG | 0.467233 | 3_3:+68050371 | Msa0466930:CDS |
| CTCCCGAAGTCGTTTGCACC+AGG | 0.468057 | 3_3:-68050374 | None:intergenic |
| ACATTAAGTTACCTAAAATC+TGG | 0.468640 | 3_3:-68050638 | None:intergenic |
| TTTGTAGTTTATTATCAAAA+GGG | 0.474274 | 3_3:+68051894 | Msa0466930:three_prime_UTR |
| TGCTTGGTATTATACTTGGA+GGG | 0.476032 | 3_3:+68049495 | Msa0466930:CDS |
| TTCCTCTTGGAGCAAACTAT+AGG | 0.479293 | 3_3:+68049570 | Msa0466930:CDS |
| TCTTCTTCTTGCTGAAACTG+TGG | 0.479646 | 3_3:-68048481 | None:intergenic |
| TCTAATGAAGATTGATGAAG+AGG | 0.482467 | 3_3:+68050085 | Msa0466930:CDS |
| AGTTACCTAAAATCTGGTAC+TGG | 0.484700 | 3_3:-68050632 | None:intergenic |
| AGTTGAAATAGAAAAGAAAA+AGG | 0.486377 | 3_3:-68052015 | None:intergenic |
| AAAATTCATCATTCTGTCGT+TGG | 0.491625 | 3_3:+68051022 | Msa0466930:CDS |
| ATGGAGGCAAATACCGAGGT+TGG | 0.492596 | 3_3:-68050783 | None:intergenic |
| TATAGAGTAGAAGACTCTTT+CGG | 0.496006 | 3_3:+68051798 | Msa0466930:three_prime_UTR |
| TTGGAATCAGAAACAGCCTT+GGG | 0.500304 | 3_3:-68048540 | None:intergenic |
| TTTGCTCCAAGAGGAACAGC+TGG | 0.502679 | 3_3:-68049563 | None:intergenic |
| TGGGATTGTCACAGTAATCA+AGG | 0.507999 | 3_3:+68051614 | Msa0466930:CDS |
| GTGGCACGTGCTTCATCCAT+TGG | 0.509798 | 3_3:-68050053 | None:intergenic |
| ACGGGACAAGTGCCTGTTCA+AGG | 0.513295 | 3_3:-68049672 | None:intergenic |
| TGCTGCAGACAGATGCTGAT+AGG | 0.514976 | 3_3:+68051212 | Msa0466930:intron |
| GCTTGGTATTATACTTGGAG+GGG | 0.521975 | 3_3:+68049496 | Msa0466930:CDS |
| TGGAGGCAAATACCGAGGTT+GGG | 0.523382 | 3_3:-68050782 | None:intergenic |
| TTATCCATTGACCAAGAAGC+GGG | 0.524482 | 3_3:+68049535 | Msa0466930:CDS |
| ATCCCAAGTTCGGTTGCACC+AGG | 0.525786 | 3_3:-68050407 | None:intergenic |
| CTTGGTATTATACTTGGAGG+GGG | 0.527339 | 3_3:+68049497 | Msa0466930:CDS |
| GAATTTGCCGAGAAGCCAAA+AGG | 0.527957 | 3_3:+68050119 | Msa0466930:CDS |
| GAGATTTATACAAGCACATA+GGG | 0.529017 | 3_3:+68049998 | Msa0466930:CDS |
| GTAGTTTATTATCAAAAGGG+TGG | 0.529105 | 3_3:+68051897 | Msa0466930:three_prime_UTR |
| GTGTCTTTGAAAGTTGCAAA+AGG | 0.530776 | 3_3:-68052059 | None:intergenic |
| CAAGAATTCTCATATCAAAA+GGG | 0.532293 | 3_3:+68051276 | Msa0466930:CDS |
| TTCCTGGTGCAACCGAACTT+GGG | 0.535911 | 3_3:+68050405 | Msa0466930:CDS |
| CAATGGATAAAGACGCGTCC+CGG | 0.540169 | 3_3:-68049522 | None:intergenic |
| AGAGATTTATACAAGCACAT+AGG | 0.540805 | 3_3:+68049997 | Msa0466930:CDS |
| AGAGTCCTGAGAATCCAAAC+TGG | 0.541444 | 3_3:+68049759 | Msa0466930:CDS |
| GAAGATGAGGAAGAAGAAGA+AGG | 0.545219 | 3_3:-68048390 | None:intergenic |
| GCTTTCTATAATGCAAATCT+GGG | 0.546112 | 3_3:+68050596 | Msa0466930:CDS |
| GTGCAAGCTTATTTATACGA+TGG | 0.548370 | 3_3:+68050545 | Msa0466930:CDS |
| CCATGTTGCTCGCATATGCA+CGG | 0.549892 | 3_3:-68049691 | None:intergenic |
| TGTTTAGGCAGTTGCTAACA+GGG | 0.550516 | 3_3:-68049604 | None:intergenic |
| CGTGCATATGCGAGCAACAT+GGG | 0.553230 | 3_3:+68049692 | Msa0466930:CDS |
| ATCAGAAGGTGCAATTATTG+AGG | 0.553577 | 3_3:+68051060 | Msa0466930:CDS |
| TTTAGATGATGAAGAAGATG+AGG | 0.554142 | 3_3:-68048403 | None:intergenic |
| ATCCATTGGCAATGCAGCAA+CGG | 0.557333 | 3_3:-68050039 | None:intergenic |
| CACCGTTGCTGCATTGCCAA+TGG | 0.558190 | 3_3:+68050037 | Msa0466930:CDS |
| GAACAGCTCTGCTTCCGCGT+TGG | 0.559497 | 3_3:+68051741 | Msa0466930:three_prime_UTR |
| GAATGAGAGGTTACGTGCAA+TGG | 0.561185 | 3_3:-68048427 | None:intergenic |
| TTTGGAATCAGAAACAGCCT+TGG | 0.565050 | 3_3:-68048541 | None:intergenic |
| ATGCCTTATATTGCTAGTAT+GGG | 0.567877 | 3_3:+68050299 | Msa0466930:CDS |
| TTATTTATACGATGGATACT+GGG | 0.571162 | 3_3:+68050553 | Msa0466930:CDS |
| AGCCTTGGGAGAAACAATGA+AGG | 0.573342 | 3_3:-68048526 | None:intergenic |
| CAATGTGCAAGAAGCTGCAA+GGG | 0.577474 | 3_3:+68051566 | Msa0466930:CDS |
| GAATTCTTGCCAATACCAAT+CGG | 0.579260 | 3_3:-68051262 | None:intergenic |
| GGTGCACGTTATATTTGGCT+CGG | 0.579501 | 3_3:+68051770 | Msa0466930:three_prime_UTR |
| TTGAGGACACATTGTTAATG+GGG | 0.585614 | 3_3:+68051077 | Msa0466930:CDS |
| GGAAGACATCGGTACAATTG+AGG | 0.587153 | 3_3:+68050574 | Msa0466930:CDS |
| ACAATGTGCAAGAAGCTGCA+AGG | 0.590355 | 3_3:+68051565 | Msa0466930:CDS |
| TGGTGACCATTTGTATCGAA+TGG | 0.590390 | 3_3:+68049968 | Msa0466930:CDS |
| CATGTTGCTCGCATATGCAC+GGG | 0.591727 | 3_3:-68049690 | None:intergenic |
| AGCCTATAGTTTGCTCCAAG+AGG | 0.591774 | 3_3:-68049572 | None:intergenic |
| ATGGCTTCAATGGCTTCGAT+CGG | 0.602135 | 3_3:+68048354 | Msa0466930:CDS |
| CTGCGATCTTGCATATCAGA+AGG | 0.603808 | 3_3:+68051046 | Msa0466930:CDS |
| ACCTTCCAGCAGTGAAAATG+GGG | 0.614673 | 3_3:-68051711 | None:intergenic |
| GCTAAAGGCAGTGTTCCGAT+TGG | 0.615135 | 3_3:+68051247 | Msa0466930:CDS |
| CTAATGAAGATTGATGAAGA+GGG | 0.625579 | 3_3:+68050086 | Msa0466930:CDS |
| GAGGAAATAGTATACTAGAG+AGG | 0.626379 | 3_3:-68051672 | None:intergenic |
| TGCAGACAGATGCTGATAGG+AGG | 0.629052 | 3_3:+68051215 | Msa0466930:intron |
| CCGTGCATATGCGAGCAACA+TGG | 0.631421 | 3_3:+68049691 | Msa0466930:CDS |
| GGGTGTTGCACAGCAGCAAG+AGG | 0.633107 | 3_3:-68051691 | None:intergenic |
| TTTATCCATTGACCAAGAAG+CGG | 0.635327 | 3_3:+68049534 | Msa0466930:CDS |
| TCTCGATGACGAGAGAGCAA+AGG | 0.636235 | 3_3:+68050274 | Msa0466930:CDS |
| CTCCAATCTACACCCAACCT+CGG | 0.638794 | 3_3:+68050770 | Msa0466930:CDS |
| ACTGACAGTGTTATTGGTGA+AGG | 0.639826 | 3_3:+68050829 | Msa0466930:CDS |
| CTTTAGATGACAGTTCCACT+CGG | 0.643445 | 3_3:-68051648 | None:intergenic |
| TAGAATTGGAGACGATGTGA+AGG | 0.652530 | 3_3:+68051318 | Msa0466930:CDS |
| GCCTTGGGAGAAACAATGAA+GGG | 0.652631 | 3_3:-68048525 | None:intergenic |
| ATTACAGGGAACTGCAGATG+CGG | 0.654738 | 3_3:+68049887 | Msa0466930:intron |
| TGAGGACACATTGTTAATGG+GGG | 0.655322 | 3_3:+68051078 | Msa0466930:CDS |
| CTTCATTAGACCGAATGCAG+TGG | 0.656858 | 3_3:-68050072 | None:intergenic |
| TTCACTTCATCACAGCTCTG+TGG | 0.657603 | 3_3:+68048447 | Msa0466930:CDS |
| GCATCAAGCATCTTAGATGG+AGG | 0.658896 | 3_3:-68050799 | None:intergenic |
| GAAGCTGCAAGGGAAACTGA+AGG | 0.667346 | 3_3:+68051576 | Msa0466930:CDS |
| TAATGAAGATTGATGAAGAG+GGG | 0.674324 | 3_3:+68050087 | Msa0466930:CDS |
| CAAACAAAGAAATCAATGTG+TGG | 0.677196 | 3_3:-68048254 | None:intergenic |
| AGGGAACTGCAGATGCGGTG+AGG | 0.678286 | 3_3:+68049892 | Msa0466930:intron |
| TTGCACCAGGAAACTTGTCG+CGG | 0.680161 | 3_3:-68050361 | None:intergenic |
| GATGGATACTGGGAAGACAT+CGG | 0.689450 | 3_3:+68050563 | Msa0466930:CDS |
| GCATATGCGAGCAACATGGG+TGG | 0.694220 | 3_3:+68049695 | Msa0466930:CDS |
| AAGGATGCATTGATTCCGAG+TGG | 0.694244 | 3_3:+68051633 | Msa0466930:CDS |
| GCTGTGATGAAGTGAATGAG+AGG | 0.714707 | 3_3:-68048440 | None:intergenic |
| ATGCTGAATTGAATTGTGTG+AGG | 0.733174 | 3_3:-68049649 | None:intergenic |
| TTAGATGGAGGCAAATACCG+AGG | 0.735785 | 3_3:-68050787 | None:intergenic |
| CGTGCACCAGAAAACCAACG+CGG | 0.814333 | 3_3:-68051755 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTCTCAAATTATTAT+CGG | - | chr3_3:68049093-68049112 | None:intergenic | 15.0% |
| !! | CAAAAAAAGAACATATTATA+TGG | - | chr3_3:68050173-68050192 | None:intergenic | 15.0% |
| !! | ATATTTAATCAAAGTTTACA+TGG | + | chr3_3:68051487-68051506 | Msa0466930:intron | 15.0% |
| !! | ATGATGTAAATTTAATTATC+CGG | + | chr3_3:68051826-68051845 | Msa0466930:three_prime_UTR | 15.0% |
| !!! | TTTTGTAGTTTATTATCAAA+AGG | + | chr3_3:68051893-68051912 | Msa0466930:three_prime_UTR | 15.0% |
| !! | TTTGTAGTTTATTATCAAAA+GGG | + | chr3_3:68051894-68051913 | Msa0466930:three_prime_UTR | 15.0% |
| !!! | TAATTTGAGTTTGTTGATAA+TGG | + | chr3_3:68048748-68048767 | Msa0466930:intron | 20.0% |
| !!! | AATTTGAGTTTGTTGATAAT+GGG | + | chr3_3:68048749-68048768 | Msa0466930:intron | 20.0% |
| !!! | TTGATATTGTAGTTTGTTTT+TGG | + | chr3_3:68048777-68048796 | Msa0466930:intron | 20.0% |
| !!! | TGATATTGTAGTTTGTTTTT+GGG | + | chr3_3:68048778-68048797 | Msa0466930:intron | 20.0% |
| !!! | GATGAATTTTTGACATAAAA+TGG | + | chr3_3:68048830-68048849 | Msa0466930:intron | 20.0% |
| !!! | TTTATTTGAGTTTTTGTATG+TGG | + | chr3_3:68048899-68048918 | Msa0466930:intron | 20.0% |
| !! | TAATAGTTCTTACTTTGTAT+TGG | - | chr3_3:68049357-68049376 | None:intergenic | 20.0% |
| !! | TTAGGAACTATATTTGAATT+TGG | + | chr3_3:68049421-68049440 | Msa0466930:intron | 20.0% |
| !! | AACTATATTTGAATTTGGTA+GGG | + | chr3_3:68049426-68049445 | Msa0466930:intron | 20.0% |
| !!! | GTAATGTAATGATTTTATGA+TGG | + | chr3_3:68049461-68049480 | Msa0466930:intron | 20.0% |
| !! | AACAACAGAAAACATATATA+AGG | - | chr3_3:68049802-68049821 | None:intergenic | 20.0% |
| !!! | TGTTATGACTTTTTTGTATT+AGG | + | chr3_3:68050232-68050251 | Msa0466930:intron | 20.0% |
| !!! | AGGGAAAAATATGAATTTTT+TGG | - | chr3_3:68050878-68050897 | None:intergenic | 20.0% |
| !! | ACAAATTTGTACATATTTCT+TGG | + | chr3_3:68050920-68050939 | Msa0466930:intron | 20.0% |
| !!! | AAGGTTATTTCATAAAAAGT+GGG | + | chr3_3:68051595-68051614 | Msa0466930:CDS | 20.0% |
| !! | AGTTGAAATAGAAAAGAAAA+AGG | - | chr3_3:68052018-68052037 | None:intergenic | 20.0% |
| ! | AAGTCACAAAACAAAAGTAA+AGG | - | chr3_3:68048616-68048635 | None:intergenic | 25.0% |
| !!! | TTTCTCAATGTTTTAGCAAT+TGG | + | chr3_3:68048718-68048737 | Msa0466930:intron | 25.0% |
| !!! | TTCTCAATGTTTTAGCAATT+GGG | + | chr3_3:68048719-68048738 | Msa0466930:intron | 25.0% |
| !! | ATGTTACGTGTTTTATGTAT+TGG | + | chr3_3:68048871-68048890 | Msa0466930:intron | 25.0% |
| !! | TGTTACGTGTTTTATGTATT+GGG | + | chr3_3:68048872-68048891 | Msa0466930:intron | 25.0% |
| ! | TTGACATTATCAATCATATG+AGG | - | chr3_3:68048976-68048995 | None:intergenic | 25.0% |
| ! | ACTATCACACTAATTTGAAA+TGG | + | chr3_3:68049018-68049037 | Msa0466930:intron | 25.0% |
| ! | GAACTATATTTGAATTTGGT+AGG | + | chr3_3:68049425-68049444 | Msa0466930:intron | 25.0% |
| ! | ACTATATTTGAATTTGGTAG+GGG | + | chr3_3:68049427-68049446 | Msa0466930:intron | 25.0% |
| ! | TCTTTGATATGTTACTGTTT+AGG | - | chr3_3:68049622-68049641 | None:intergenic | 25.0% |
| !!! | TTAGGTTGATACTACTATTT+TGG | + | chr3_3:68050250-68050269 | Msa0466930:intron | 25.0% |
| !!! | TAGGTTGATACTACTATTTT+GGG | + | chr3_3:68050251-68050270 | Msa0466930:intron | 25.0% |
| ! | TTATTTATACGATGGATACT+GGG | + | chr3_3:68050553-68050572 | Msa0466930:CDS | 25.0% |
| ! | ACATTAAGTTACCTAAAATC+TGG | - | chr3_3:68050641-68050660 | None:intergenic | 25.0% |
| !!! | GATTTTAGGTAACTTAATGT+TGG | + | chr3_3:68050641-68050660 | Msa0466930:intron | 25.0% |
| ! | CAGTAGGATGAATAAATAAA+AGG | - | chr3_3:68050667-68050686 | None:intergenic | 25.0% |
| ! | GTTAAAATAAAACAGACAGT+AGG | - | chr3_3:68050683-68050702 | None:intergenic | 25.0% |
| ! | AACAAACATTAAACATAAGC+TGG | - | chr3_3:68050717-68050736 | None:intergenic | 25.0% |
| ! | AGCTTATGTTTAATGTTTGT+TGG | + | chr3_3:68050716-68050735 | Msa0466930:intron | 25.0% |
| ! | GCTTATGTTTAATGTTTGTT+GGG | + | chr3_3:68050717-68050736 | Msa0466930:intron | 25.0% |
| ! | GGAACAAAATATTGAAAACA+AGG | - | chr3_3:68050992-68051011 | None:intergenic | 25.0% |
| !!! | TTCAATATTGGTTTTCTGAT+TGG | + | chr3_3:68051187-68051206 | Msa0466930:intron | 25.0% |
| ! | CAAGAATTCTCATATCAAAA+GGG | + | chr3_3:68051276-68051295 | Msa0466930:CDS | 25.0% |
| !! | GAAGGTTATTTCATAAAAAG+TGG | + | chr3_3:68051594-68051613 | Msa0466930:CDS | 25.0% |
| CAAACAAAGAAATCAATGTG+TGG | - | chr3_3:68048257-68048276 | None:intergenic | 30.0% | |
| TTTAGATGATGAAGAAGATG+AGG | - | chr3_3:68048406-68048425 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAGAAAACTA+TGG | + | chr3_3:68048495-68048514 | Msa0466930:CDS | 30.0% | |
| TAGTGAGAGATAGAGAAAAT+GGG | + | chr3_3:68048657-68048676 | Msa0466930:intron | 30.0% | |
| !!! | GTTTGTTTTTGGGTTTCTTA+AGG | + | chr3_3:68048788-68048807 | Msa0466930:intron | 30.0% |
| TTTCTTAAGGTAGATCAGAT+TGG | + | chr3_3:68048801-68048820 | Msa0466930:intron | 30.0% | |
| !! | TTTGAGTTTTTGTATGTGGT+TGG | + | chr3_3:68048903-68048922 | Msa0466930:intron | 30.0% |
| AGTGCAAATAATGTCATGAT+TGG | - | chr3_3:68049001-68049020 | None:intergenic | 30.0% | |
| TCTCAAATTATTATCGGTGT+CGG | - | chr3_3:68049087-68049106 | None:intergenic | 30.0% | |
| CATATATATCAATGTCGTGA+AGG | + | chr3_3:68049129-68049148 | Msa0466930:intron | 30.0% | |
| ! | TGCATTTTGAATATGAAGCA+AGG | - | chr3_3:68049208-68049227 | None:intergenic | 30.0% |
| ATTCACGCAATATTATCATG+TGG | + | chr3_3:68049295-68049314 | Msa0466930:intron | 30.0% | |
| TTCACGCAATATTATCATGT+GGG | + | chr3_3:68049296-68049315 | Msa0466930:intron | 30.0% | |
| ATATAAGGTTGCTTATTACC+TGG | - | chr3_3:68049787-68049806 | None:intergenic | 30.0% | |
| TTTATTGCTATGATCACTTG+TGG | + | chr3_3:68049826-68049845 | Msa0466930:intron | 30.0% | |
| TTGAATGCTTTCACTATTAC+AGG | + | chr3_3:68049872-68049891 | Msa0466930:intron | 30.0% | |
| TGAATGCTTTCACTATTACA+GGG | + | chr3_3:68049873-68049892 | Msa0466930:intron | 30.0% | |
| ! | TTAGAATACTTAGTTCTTGC+TGG | + | chr3_3:68049948-68049967 | Msa0466930:CDS | 30.0% |
| CATAATCCATTCGATACAAA+TGG | - | chr3_3:68049977-68049996 | None:intergenic | 30.0% | |
| AGAGATTTATACAAGCACAT+AGG | + | chr3_3:68049997-68050016 | Msa0466930:CDS | 30.0% | |
| GAGATTTATACAAGCACATA+GGG | + | chr3_3:68049998-68050017 | Msa0466930:CDS | 30.0% | |
| TCTAATGAAGATTGATGAAG+AGG | + | chr3_3:68050085-68050104 | Msa0466930:CDS | 30.0% | |
| CTAATGAAGATTGATGAAGA+GGG | + | chr3_3:68050086-68050105 | Msa0466930:CDS | 30.0% | |
| TAATGAAGATTGATGAAGAG+GGG | + | chr3_3:68050087-68050106 | Msa0466930:CDS | 30.0% | |
| AATGCCTTATATTGCTAGTA+TGG | + | chr3_3:68050298-68050317 | Msa0466930:CDS | 30.0% | |
| ATGCCTTATATTGCTAGTAT+GGG | + | chr3_3:68050299-68050318 | Msa0466930:CDS | 30.0% | |
| ATACCCATACTAGCAATATA+AGG | - | chr3_3:68050305-68050324 | None:intergenic | 30.0% | |
| CTTTGTATTGAACAGATAGA+AGG | - | chr3_3:68050446-68050465 | None:intergenic | 30.0% | |
| CTTATTTATACGATGGATAC+TGG | + | chr3_3:68050552-68050571 | Msa0466930:CDS | 30.0% | |
| GCTTTCTATAATGCAAATCT+GGG | + | chr3_3:68050596-68050615 | Msa0466930:CDS | 30.0% | |
| ! | TTTAATGTTTGTTGGGACAT+TGG | + | chr3_3:68050724-68050743 | Msa0466930:intron | 30.0% |
| AAAATTCATCATTCTGTCGT+TGG | + | chr3_3:68051022-68051041 | Msa0466930:CDS | 30.0% | |
| TATTGAGGACACATTGTTAA+TGG | + | chr3_3:68051075-68051094 | Msa0466930:CDS | 30.0% | |
| ATTGAGGACACATTGTTAAT+GGG | + | chr3_3:68051076-68051095 | Msa0466930:CDS | 30.0% | |
| TGTCATATTGTGACGTTAAT+AGG | + | chr3_3:68051133-68051152 | Msa0466930:intron | 30.0% | |
| !! | GGAAGTACTAACTTCAATAT+TGG | + | chr3_3:68051175-68051194 | Msa0466930:intron | 30.0% |
| GCAAGAATTCTCATATCAAA+AGG | + | chr3_3:68051275-68051294 | Msa0466930:CDS | 30.0% | |
| ATTGACAAGAATGCTAGAAT+TGG | + | chr3_3:68051304-68051323 | Msa0466930:CDS | 30.0% | |
| TATAGAGTAGAAGACTCTTT+CGG | + | chr3_3:68051798-68051817 | Msa0466930:three_prime_UTR | 30.0% | |
| !! | CTAAGAAGCTTTTATTTGAC+CGG | - | chr3_3:68051848-68051867 | None:intergenic | 30.0% |
| GTAGTTTATTATCAAAAGGG+TGG | + | chr3_3:68051897-68051916 | Msa0466930:three_prime_UTR | 30.0% | |
| !! | TAATGTGATTTGCTTCTTCT+AGG | + | chr3_3:68051982-68052001 | Msa0466930:three_prime_UTR | 30.0% |
| ! | AAGACAAGTCTGTGAGTTTT+TGG | - | chr3_3:68048562-68048581 | None:intergenic | 35.0% |
| GTAGTGAGAGATAGAGAAAA+TGG | + | chr3_3:68048656-68048675 | Msa0466930:intron | 35.0% | |
| AGTGAGAGATAGAGAAAATG+GGG | + | chr3_3:68048658-68048677 | Msa0466930:intron | 35.0% | |
| TGGTCAAAATCTATGAAGCA+CGG | + | chr3_3:68049038-68049057 | Msa0466930:intron | 35.0% | |
| ACTCAATTGCACAAACAATG+AGG | - | chr3_3:68049244-68049263 | None:intergenic | 35.0% | |
| !!! | AACCCTGCATTTTTTGTGTT+AGG | + | chr3_3:68049390-68049409 | Msa0466930:intron | 35.0% |
| TGCCTAACACAAAAAATGCA+GGG | - | chr3_3:68049395-68049414 | None:intergenic | 35.0% | |
| ATGCCTAACACAAAAAATGC+AGG | - | chr3_3:68049396-68049415 | None:intergenic | 35.0% | |
| TTGTGTTAGGCATGTTTGTT+AGG | + | chr3_3:68049403-68049422 | Msa0466930:intron | 35.0% | |
| AGTGTGCTTGGTATTATACT+TGG | + | chr3_3:68049491-68049510 | Msa0466930:CDS | 35.0% | |
| TGCTTGGTATTATACTTGGA+GGG | + | chr3_3:68049495-68049514 | Msa0466930:CDS | 35.0% | |
| TTTATCCATTGACCAAGAAG+CGG | + | chr3_3:68049534-68049553 | Msa0466930:CDS | 35.0% | |
| ATGCTGAATTGAATTGTGTG+AGG | - | chr3_3:68049652-68049671 | None:intergenic | 35.0% | |
| ATGGGTGGTTACAAAAATGA+AGG | + | chr3_3:68049710-68049729 | Msa0466930:CDS | 35.0% | |
| CAAAAATGAAGGTTTCGTTG+AGG | + | chr3_3:68049721-68049740 | Msa0466930:CDS | 35.0% | |
| ! | GCAATATTTATGGCTTTTCG+AGG | + | chr3_3:68049914-68049933 | Msa0466930:CDS | 35.0% |
| AGTTGAAAGCTATGAAAGTG+AGG | + | chr3_3:68050147-68050166 | Msa0466930:intron | 35.0% | |
| GTGCAAGCTTATTTATACGA+TGG | + | chr3_3:68050545-68050564 | Msa0466930:CDS | 35.0% | |
| GGCTTTCTATAATGCAAATC+TGG | + | chr3_3:68050595-68050614 | Msa0466930:CDS | 35.0% | |
| !!! | AAAATCTGGTACTGGCTTTT+TGG | - | chr3_3:68050627-68050646 | None:intergenic | 35.0% |
| ! | AAAAGCCAGTACCAGATTTT+AGG | + | chr3_3:68050627-68050646 | Msa0466930:CDS | 35.0% |
| AGTTACCTAAAATCTGGTAC+TGG | - | chr3_3:68050635-68050654 | None:intergenic | 35.0% | |
| ACATAAGCTGGCTGTTATTA+TGG | - | chr3_3:68050705-68050724 | None:intergenic | 35.0% | |
| GATATCACTGACAGTGTTAT+TGG | + | chr3_3:68050823-68050842 | Msa0466930:CDS | 35.0% | |
| TGGTGAAGGATGTGTAATTA+AGG | + | chr3_3:68050843-68050862 | Msa0466930:intron | 35.0% | |
| ATACTAGTAACGATGGAGTA+GGG | - | chr3_3:68050897-68050916 | None:intergenic | 35.0% | |
| ! | TGATGAATTTTGCAGTTCTG+TGG | - | chr3_3:68051013-68051032 | None:intergenic | 35.0% |
| ! | ATCAGAAGGTGCAATTATTG+AGG | + | chr3_3:68051060-68051079 | Msa0466930:CDS | 35.0% |
| TTGAGGACACATTGTTAATG+GGG | + | chr3_3:68051077-68051096 | Msa0466930:CDS | 35.0% | |
| !! | GGAATTGACTTTAGTTTGAC+TGG | + | chr3_3:68051154-68051173 | Msa0466930:intron | 35.0% |
| GAATTCTTGCCAATACCAAT+CGG | - | chr3_3:68051265-68051284 | None:intergenic | 35.0% | |
| GAGGAAATAGTATACTAGAG+AGG | - | chr3_3:68051675-68051694 | None:intergenic | 35.0% | |
| ! | TTTCTGGTGCACGTTATATT+TGG | + | chr3_3:68051765-68051784 | Msa0466930:three_prime_UTR | 35.0% |
| ACCTCGAAAAGCCATCTATA+TGG | + | chr3_3:68048335-68048354 | Msa0466930:exon | 40.0% | |
| AGCCATCTATATGGCTTCAA+TGG | + | chr3_3:68048344-68048363 | Msa0466930:exon | 40.0% | |
| AGCCATTGAAGCCATATAGA+TGG | - | chr3_3:68048349-68048368 | None:intergenic | 40.0% | |
| GAAGATGAGGAAGAAGAAGA+AGG | - | chr3_3:68048393-68048412 | None:intergenic | 40.0% | |
| TCTTCTTCTTGCTGAAACTG+TGG | - | chr3_3:68048484-68048503 | None:intergenic | 40.0% | |
| TTGGAATCAGAAACAGCCTT+GGG | - | chr3_3:68048543-68048562 | None:intergenic | 40.0% | |
| ! | TTTGGAATCAGAAACAGCCT+TGG | - | chr3_3:68048544-68048563 | None:intergenic | 40.0% |
| ! | TATCAATGTCGTGAAGGTGT+CGG | + | chr3_3:68049135-68049154 | Msa0466930:intron | 40.0% |
| TATGAAGCAAGGACATTCCT+TGG | - | chr3_3:68049197-68049216 | None:intergenic | 40.0% | |
| ! | CAATATTATCATGTGGGCTG+TGG | + | chr3_3:68049302-68049321 | Msa0466930:intron | 40.0% |
| GTGCTTGGTATTATACTTGG+AGG | + | chr3_3:68049494-68049513 | Msa0466930:CDS | 40.0% | |
| GCTTGGTATTATACTTGGAG+GGG | + | chr3_3:68049496-68049515 | Msa0466930:CDS | 40.0% | |
| CTTGGTATTATACTTGGAGG+GGG | + | chr3_3:68049497-68049516 | Msa0466930:CDS | 40.0% | |
| TTATCCATTGACCAAGAAGC+GGG | + | chr3_3:68049535-68049554 | Msa0466930:CDS | 40.0% | |
| TTCCTCTTGGAGCAAACTAT+AGG | + | chr3_3:68049570-68049589 | Msa0466930:CDS | 40.0% | |
| TGTTTAGGCAGTTGCTAACA+GGG | - | chr3_3:68049607-68049626 | None:intergenic | 40.0% | |
| TCAATTCAGCATCCTTGAAC+AGG | + | chr3_3:68049660-68049679 | Msa0466930:CDS | 40.0% | |
| CTTATTACCTGGAACCAGTT+TGG | - | chr3_3:68049776-68049795 | None:intergenic | 40.0% | |
| ATGCGGTGAGGCAATATTTA+TGG | + | chr3_3:68049904-68049923 | Msa0466930:CDS | 40.0% | |
| TGGTGACCATTTGTATCGAA+TGG | + | chr3_3:68049968-68049987 | Msa0466930:CDS | 40.0% | |
| ! | GCTTTCAACTGTTCTCCTTT+TGG | - | chr3_3:68050137-68050156 | None:intergenic | 40.0% |
| TCTTACTCTCATCCCAAGTT+CGG | - | chr3_3:68050420-68050439 | None:intergenic | 40.0% | |
| ACGTATTTGCGAATCTGCTT+AGG | + | chr3_3:68050523-68050542 | Msa0466930:intron | 40.0% | |
| TCAGCATCAAGCATCTTAGA+TGG | - | chr3_3:68050805-68050824 | None:intergenic | 40.0% | |
| ! | ACTGACAGTGTTATTGGTGA+AGG | + | chr3_3:68050829-68050848 | Msa0466930:CDS | 40.0% |
| CATACTAGTAACGATGGAGT+AGG | - | chr3_3:68050898-68050917 | None:intergenic | 40.0% | |
| CTACTCCATCGTTACTAGTA+TGG | + | chr3_3:68050896-68050915 | Msa0466930:intron | 40.0% | |
| TTGTGCCATACTAGTAACGA+TGG | - | chr3_3:68050904-68050923 | None:intergenic | 40.0% | |
| TGAGGACACATTGTTAATGG+GGG | + | chr3_3:68051078-68051097 | Msa0466930:CDS | 40.0% | |
| AATGGGGGCAGATTATTATG+AGG | + | chr3_3:68051093-68051112 | Msa0466930:CDS | 40.0% | |
| ! | AGATGCTGATAGGAGGTTTT+TGG | + | chr3_3:68051222-68051241 | Msa0466930:CDS | 40.0% |
| TAGAATTGGAGACGATGTGA+AGG | + | chr3_3:68051318-68051337 | Msa0466930:CDS | 40.0% | |
| AGAGAACAATGCACTTAGAC+AGG | - | chr3_3:68051393-68051412 | None:intergenic | 40.0% | |
| CATGAATGTGGAGCAAGATA+TGG | - | chr3_3:68051423-68051442 | None:intergenic | 40.0% | |
| TGGGATTGTCACAGTAATCA+AGG | + | chr3_3:68051614-68051633 | Msa0466930:CDS | 40.0% | |
| CTTTAGATGACAGTTCCACT+CGG | - | chr3_3:68051651-68051670 | None:intergenic | 40.0% | |
| ! | GCCATATAGATGGCTTTTCG+AGG | - | chr3_3:68048339-68048358 | None:intergenic | 45.0% |
| ATGGCTTCAATGGCTTCGAT+CGG | + | chr3_3:68048354-68048373 | Msa0466930:CDS | 45.0% | |
| GAATGAGAGGTTACGTGCAA+TGG | - | chr3_3:68048430-68048449 | None:intergenic | 45.0% | |
| GCTGTGATGAAGTGAATGAG+AGG | - | chr3_3:68048443-68048462 | None:intergenic | 45.0% | |
| TTCACTTCATCACAGCTCTG+TGG | + | chr3_3:68048447-68048466 | Msa0466930:CDS | 45.0% | |
| GCCTTGGGAGAAACAATGAA+GGG | - | chr3_3:68048528-68048547 | None:intergenic | 45.0% | |
| AGCCTTGGGAGAAACAATGA+AGG | - | chr3_3:68048529-68048548 | None:intergenic | 45.0% | |
| CAACTAACTCTGCTAGCATC+TGG | - | chr3_3:68048588-68048607 | None:intergenic | 45.0% | |
| GCAAGGACATTCCTTGGATT+AGG | - | chr3_3:68049191-68049210 | None:intergenic | 45.0% | |
| ! | GATGGTTTTCAGAGTGTGCT+TGG | + | chr3_3:68049479-68049498 | Msa0466930:intron | 45.0% |
| !! | AGCCTATAGTTTGCTCCAAG+AGG | - | chr3_3:68049575-68049594 | None:intergenic | 45.0% |
| CTGTTTAGGCAGTTGCTAAC+AGG | - | chr3_3:68049608-68049627 | None:intergenic | 45.0% | |
| AGAGTCCTGAGAATCCAAAC+TGG | + | chr3_3:68049759-68049778 | Msa0466930:CDS | 45.0% | |
| TGGAACCAGTTTGGATTCTC+AGG | - | chr3_3:68049767-68049786 | None:intergenic | 45.0% | |
| ! | TGAGAATCCAAACTGGTTCC+AGG | + | chr3_3:68049766-68049785 | Msa0466930:CDS | 45.0% |
| ATTACAGGGAACTGCAGATG+CGG | + | chr3_3:68049887-68049906 | Msa0466930:intron | 45.0% | |
| ATCCATTGGCAATGCAGCAA+CGG | - | chr3_3:68050042-68050061 | None:intergenic | 45.0% | |
| CTTCATTAGACCGAATGCAG+TGG | - | chr3_3:68050075-68050094 | None:intergenic | 45.0% | |
| GAATTTGCCGAGAAGCCAAA+AGG | + | chr3_3:68050119-68050138 | Msa0466930:CDS | 45.0% | |
| !!! | CTGTTCTCCTTTTGGCTTCT+CGG | - | chr3_3:68050129-68050148 | None:intergenic | 45.0% |
| TTTCCTGGTGCAAACGACTT+CGG | + | chr3_3:68050371-68050390 | Msa0466930:CDS | 45.0% | |
| TTCGGGAGTGAAGTTATTCC+TGG | + | chr3_3:68050389-68050408 | Msa0466930:CDS | 45.0% | |
| GATGGATACTGGGAAGACAT+CGG | + | chr3_3:68050563-68050582 | Msa0466930:CDS | 45.0% | |
| GGAAGACATCGGTACAATTG+AGG | + | chr3_3:68050574-68050593 | Msa0466930:CDS | 45.0% | |
| TTAGATGGAGGCAAATACCG+AGG | - | chr3_3:68050790-68050809 | None:intergenic | 45.0% | |
| GCATCAAGCATCTTAGATGG+AGG | - | chr3_3:68050802-68050821 | None:intergenic | 45.0% | |
| CTGCGATCTTGCATATCAGA+AGG | + | chr3_3:68051046-68051065 | Msa0466930:CDS | 45.0% | |
| !!! | AGGAGGTTTTTGGCTGCTAA+AGG | + | chr3_3:68051232-68051251 | Msa0466930:CDS | 45.0% |
| ATCTTGCTCCACATTCATGC+TGG | + | chr3_3:68051424-68051443 | Msa0466930:intron | 45.0% | |
| TCACTCTTCCAGCATGAATG+TGG | - | chr3_3:68051435-68051454 | None:intergenic | 45.0% | |
| ACATTCATGCTGGAAGAGTG+AGG | + | chr3_3:68051434-68051453 | Msa0466930:intron | 45.0% | |
| CATTCATGCTGGAAGAGTGA+GGG | + | chr3_3:68051435-68051454 | Msa0466930:intron | 45.0% | |
| ACAATGTGCAAGAAGCTGCA+AGG | + | chr3_3:68051565-68051584 | Msa0466930:CDS | 45.0% | |
| CAATGTGCAAGAAGCTGCAA+GGG | + | chr3_3:68051566-68051585 | Msa0466930:CDS | 45.0% | |
| !! | AAGGATGCATTGATTCCGAG+TGG | + | chr3_3:68051633-68051652 | Msa0466930:CDS | 45.0% |
| ACCTTCCAGCAGTGAAAATG+GGG | - | chr3_3:68051714-68051733 | None:intergenic | 45.0% | |
| CACCTTCCAGCAGTGAAAAT+GGG | - | chr3_3:68051715-68051734 | None:intergenic | 45.0% | |
| ACACCTTCCAGCAGTGAAAA+TGG | - | chr3_3:68051716-68051735 | None:intergenic | 45.0% | |
| GGTGCACGTTATATTTGGCT+CGG | + | chr3_3:68051770-68051789 | Msa0466930:three_prime_UTR | 45.0% | |
| ! | GCCCTTCATTGTTTCTCCCA+AGG | + | chr3_3:68048524-68048543 | Msa0466930:CDS | 50.0% |
| GATTAGGTGTGTCCCTGTGT+CGG | - | chr3_3:68049175-68049194 | None:intergenic | 50.0% | |
| ACAGGGACACACCTAATCCA+AGG | + | chr3_3:68049177-68049196 | Msa0466930:intron | 50.0% | |
| ! | ATTATACTTGGAGGGGGTGC+CGG | + | chr3_3:68049503-68049522 | Msa0466930:CDS | 50.0% |
| CAATGGATAAAGACGCGTCC+CGG | - | chr3_3:68049525-68049544 | None:intergenic | 50.0% | |
| TTTGCCCGCTTCTTGGTCAA+TGG | - | chr3_3:68049542-68049561 | None:intergenic | 50.0% | |
| GCAAAACCAGCTGTTCCTCT+TGG | + | chr3_3:68049557-68049576 | Msa0466930:CDS | 50.0% | |
| TTTGCTCCAAGAGGAACAGC+TGG | - | chr3_3:68049566-68049585 | None:intergenic | 50.0% | |
| CATGTTGCTCGCATATGCAC+GGG | - | chr3_3:68049693-68049712 | None:intergenic | 50.0% | |
| CCATGTTGCTCGCATATGCA+CGG | - | chr3_3:68049694-68049713 | None:intergenic | 50.0% | |
| CGTGCATATGCGAGCAACAT+GGG | + | chr3_3:68049692-68049711 | Msa0466930:CDS | 50.0% | |
| TCTCGATGACGAGAGAGCAA+AGG | + | chr3_3:68050274-68050293 | Msa0466930:CDS | 50.0% | |
| TTGCACCAGGAAACTTGTCG+CGG | - | chr3_3:68050364-68050383 | None:intergenic | 50.0% | |
| TTCCTGGTGCAAACGACTTC+GGG | + | chr3_3:68050372-68050391 | Msa0466930:CDS | 50.0% | |
| ATTCCTGGTGCAACCGAACT+TGG | + | chr3_3:68050404-68050423 | Msa0466930:CDS | 50.0% | |
| TTCCTGGTGCAACCGAACTT+GGG | + | chr3_3:68050405-68050424 | Msa0466930:CDS | 50.0% | |
| CTCCAATCTACACCCAACCT+CGG | + | chr3_3:68050770-68050789 | Msa0466930:CDS | 50.0% | |
| TACCGAGGTTGGGTGTAGAT+TGG | - | chr3_3:68050775-68050794 | None:intergenic | 50.0% | |
| TGGAGGCAAATACCGAGGTT+GGG | - | chr3_3:68050785-68050804 | None:intergenic | 50.0% | |
| ATGGAGGCAAATACCGAGGT+TGG | - | chr3_3:68050786-68050805 | None:intergenic | 50.0% | |
| TGCTGCAGACAGATGCTGAT+AGG | + | chr3_3:68051212-68051231 | Msa0466930:intron | 50.0% | |
| TGCAGACAGATGCTGATAGG+AGG | + | chr3_3:68051215-68051234 | Msa0466930:intron | 50.0% | |
| GCTAAAGGCAGTGTTCCGAT+TGG | + | chr3_3:68051247-68051266 | Msa0466930:CDS | 50.0% | |
| GGCAGTGTTCCGATTGGTAT+TGG | + | chr3_3:68051253-68051272 | Msa0466930:CDS | 50.0% | |
| TGCTGGAAGAGTGAGGGAAA+TGG | + | chr3_3:68051441-68051460 | Msa0466930:intron | 50.0% | |
| GCTGGAAGAGTGAGGGAAAT+GGG | + | chr3_3:68051442-68051461 | Msa0466930:intron | 50.0% | |
| CTGGAAGAGTGAGGGAAATG+GGG | + | chr3_3:68051443-68051462 | Msa0466930:intron | 50.0% | |
| TGGAAGAGTGAGGGAAATGG+GGG | + | chr3_3:68051444-68051463 | Msa0466930:intron | 50.0% | |
| GAAGCTGCAAGGGAAACTGA+AGG | + | chr3_3:68051576-68051595 | Msa0466930:CDS | 50.0% | |
| ! | CAACACCCCATTTTCACTGC+TGG | + | chr3_3:68051706-68051725 | Msa0466930:three_prime_UTR | 50.0% |
| ! | ACCCCATTTTCACTGCTGGA+AGG | + | chr3_3:68051710-68051729 | Msa0466930:three_prime_UTR | 50.0% |
| ! | GTGGGCTGTGGCTGTTAGAT+TGG | + | chr3_3:68049314-68049333 | Msa0466930:intron | 55.0% |
| !! | TTATACTTGGAGGGGGTGCC+GGG | + | chr3_3:68049504-68049523 | Msa0466930:CDS | 55.0% |
| !!! | AGCTGGTTTTGCCCGCTTCT+TGG | - | chr3_3:68049549-68049568 | None:intergenic | 55.0% |
| ACGGGACAAGTGCCTGTTCA+AGG | - | chr3_3:68049675-68049694 | None:intergenic | 55.0% | |
| CCGTGCATATGCGAGCAACA+TGG | + | chr3_3:68049691-68049710 | Msa0466930:CDS | 55.0% | |
| GCATATGCGAGCAACATGGG+TGG | + | chr3_3:68049695-68049714 | Msa0466930:CDS | 55.0% | |
| CACCGTTGCTGCATTGCCAA+TGG | + | chr3_3:68050037-68050056 | Msa0466930:CDS | 55.0% | |
| GTGGCACGTGCTTCATCCAT+TGG | - | chr3_3:68050056-68050075 | None:intergenic | 55.0% | |
| ! | GAAGCACGTGCCACTGCATT+CGG | + | chr3_3:68050062-68050081 | Msa0466930:CDS | 55.0% |
| ATCCCAAGTTCGGTTGCACC+AGG | - | chr3_3:68050410-68050429 | None:intergenic | 55.0% | |
| !!! | CTGCTTCCGCGTTGGTTTTC+TGG | + | chr3_3:68051749-68051768 | Msa0466930:three_prime_UTR | 55.0% |
| CGTGCACCAGAAAACCAACG+CGG | - | chr3_3:68051758-68051777 | None:intergenic | 55.0% | |
| ACTGACGCGTGTCCGACACA+GGG | + | chr3_3:68049160-68049179 | Msa0466930:intron | 60.0% | |
| AGGGAACTGCAGATGCGGTG+AGG | + | chr3_3:68049892-68049911 | Msa0466930:intron | 60.0% | |
| CTGCTCCGCGACAAGTTTCC+TGG | + | chr3_3:68050356-68050375 | Msa0466930:CDS | 60.0% | |
| CTCCCGAAGTCGTTTGCACC+AGG | - | chr3_3:68050377-68050396 | None:intergenic | 60.0% | |
| ! | GGGTGTTGCACAGCAGCAAG+AGG | - | chr3_3:68051694-68051713 | None:intergenic | 60.0% |
| GAACAGCTCTGCTTCCGCGT+TGG | + | chr3_3:68051741-68051760 | Msa0466930:three_prime_UTR | 60.0% | |
| CACTGACGCGTGTCCGACAC+AGG | + | chr3_3:68049159-68049178 | Msa0466930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 68048247 | 68052080 | 68048247 | ID=Msa0466930;Name=Msa0466930 |
| chr3_3 | mRNA | 68048247 | 68052080 | 68048247 | ID=Msa0466930-mRNA-1;Parent=Msa0466930;Name=Msa0466930-mRNA-1;_AED=0.08;_eAED=0.08;_QI=107|0.87|0.88|1|1|1|9|412|511 |
| chr3_3 | exon | 68048247 | 68048599 | 68048247 | ID=Msa0466930-mRNA-1:exon:15677;Parent=Msa0466930-mRNA-1 |
| chr3_3 | exon | 68049491 | 68049787 | 68049491 | ID=Msa0466930-mRNA-1:exon:15678;Parent=Msa0466930-mRNA-1 |
| chr3_3 | exon | 68049894 | 68050163 | 68049894 | ID=Msa0466930-mRNA-1:exon:15679;Parent=Msa0466930-mRNA-1 |
| chr3_3 | exon | 68050254 | 68050433 | 68050254 | ID=Msa0466930-mRNA-1:exon:15680;Parent=Msa0466930-mRNA-1 |
| chr3_3 | exon | 68050545 | 68050648 | 68050545 | ID=Msa0466930-mRNA-1:exon:15681;Parent=Msa0466930-mRNA-1 |
| chr3_3 | exon | 68050753 | 68050855 | 68050753 | ID=Msa0466930-mRNA-1:exon:15682;Parent=Msa0466930-mRNA-1 |
| chr3_3 | exon | 68051016 | 68051114 | 68051016 | ID=Msa0466930-mRNA-1:exon:15683;Parent=Msa0466930-mRNA-1 |
| chr3_3 | exon | 68051220 | 68051339 | 68051220 | ID=Msa0466930-mRNA-1:exon:15684;Parent=Msa0466930-mRNA-1 |
| chr3_3 | exon | 68051552 | 68052080 | 68051552 | ID=Msa0466930-mRNA-1:exon:15685;Parent=Msa0466930-mRNA-1 |
| chr3_3 | five_prime_UTR | 68048247 | 68048353 | 68048247 | ID=Msa0466930-mRNA-1:five_prime_utr;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68048354 | 68048599 | 68048354 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68049491 | 68049787 | 68049491 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68049894 | 68050163 | 68049894 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68050254 | 68050433 | 68050254 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68050545 | 68050648 | 68050545 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68050753 | 68050855 | 68050753 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68051016 | 68051114 | 68051016 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68051220 | 68051339 | 68051220 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | CDS | 68051552 | 68051668 | 68051552 | ID=Msa0466930-mRNA-1:cds;Parent=Msa0466930-mRNA-1 |
| chr3_3 | three_prime_UTR | 68051669 | 68052080 | 68051669 | ID=Msa0466930-mRNA-1:three_prime_utr;Parent=Msa0466930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
