Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420700 | RHN69041.1 | 98.635 | 513 | 2 | 3 | 1 | 510 | 1 | 511 | 0.0 | 1031 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420700 | sp|P52417|GLGS2_VICFA | 95.508 | 512 | 18 | 2 | 4 | 510 | 1 | 512 | 0.0 | 956 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420700 | A0A396IWK0 | 98.635 | 513 | 2 | 3 | 1 | 510 | 1 | 511 | 0.0 | 1031 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031720 | Msa0420700 | 0.800374 | 1.485430e-48 | -8.615850e-47 |
| Msa0032120 | Msa0420700 | 0.820522 | 6.560031e-53 | -8.615850e-47 |
| Msa0032400 | Msa0420700 | 0.807212 | 5.642955e-50 | -8.615850e-47 |
| Msa0073820 | Msa0420700 | 0.818354 | 2.048404e-52 | -8.615850e-47 |
| Msa0171780 | Msa0420700 | 0.817870 | 2.635052e-52 | -8.615850e-47 |
| Msa0171930 | Msa0420700 | 0.813408 | 2.599156e-51 | -8.615850e-47 |
| Msa0185550 | Msa0420700 | 0.824074 | 9.828591e-54 | -8.615850e-47 |
| Msa0185700 | Msa0420700 | 0.819071 | 1.407544e-52 | -8.615850e-47 |
| Msa0207000 | Msa0420700 | 0.814209 | 1.731289e-51 | -8.615850e-47 |
| Msa0230400 | Msa0420700 | 0.817088 | 3.952665e-52 | -8.615850e-47 |
| Msa0372090 | Msa0420700 | 0.834734 | 2.525277e-56 | -8.615850e-47 |
| Msa0374070 | Msa0420700 | 0.882200 | 1.271025e-70 | -8.615850e-47 |
| Msa0378340 | Msa0420700 | 0.810049 | 1.398461e-50 | -8.615850e-47 |
| Msa0380420 | Msa0420700 | 0.844366 | 7.902684e-59 | -8.615850e-47 |
| Msa0420700 | Msa0423250 | 0.881969 | 1.542666e-70 | -8.615850e-47 |
| Msa0420700 | Msa0427690 | 0.806437 | 8.231501e-50 | -8.615850e-47 |
| Msa0420700 | Msa0466730 | 0.877918 | 4.271770e-69 | -8.615850e-47 |
| Msa0420700 | Msa0466930 | 0.852806 | 3.624951e-61 | -8.615850e-47 |
| Msa0420700 | Msa0469390 | 0.877432 | 6.313484e-69 | -8.615850e-47 |
| Msa0420700 | Msa0476150 | 0.816536 | 5.257071e-52 | -8.615850e-47 |
| Msa0420700 | Msa0515090 | 0.845403 | 4.150949e-59 | -8.615850e-47 |
| Msa0420700 | Msa0518520 | 0.807478 | 4.956434e-50 | -8.615850e-47 |
| Msa0420700 | Msa0524120 | 0.802081 | 6.643201e-49 | -8.615850e-47 |
| Msa0420700 | Msa0546840 | 0.803944 | 2.737062e-49 | -8.615850e-47 |
| Msa0420700 | Msa0576420 | 0.800363 | 1.492462e-48 | -8.615850e-47 |
| Msa0420700 | Msa0619330 | 0.802033 | 6.796856e-49 | -8.615850e-47 |
| Msa0420700 | Msa0681890 | 0.814176 | 1.760111e-51 | -8.615850e-47 |
| Msa0420700 | Msa0703760 | 0.804334 | 2.270503e-49 | -8.615850e-47 |
| Msa0420700 | Msa0709480 | 0.808711 | 2.707836e-50 | -8.615850e-47 |
| Msa0420700 | Msa0720840 | 0.814209 | 1.731289e-51 | -8.615850e-47 |
| Msa0420700 | Msa0803920 | 0.826375 | 2.807696e-54 | -8.615850e-47 |
| Msa0420700 | Msa0805940 | 0.823715 | 1.193024e-53 | -8.615850e-47 |
| Msa0420700 | Msa0841970 | 0.809411 | 1.917184e-50 | -8.615850e-47 |
| Msa0420700 | Msa0843690 | 0.826842 | 2.172444e-54 | -8.615850e-47 |
| Msa0420700 | Msa1020710 | 0.808188 | 3.501296e-50 | -8.615850e-47 |
| Msa0420700 | Msa1028460 | 0.813813 | 2.116399e-51 | -8.615850e-47 |
| Msa0420700 | Msa1073840 | 0.812292 | 4.563510e-51 | -8.615850e-47 |
| Msa0420700 | Msa1084490 | 0.817862 | 2.645425e-52 | -8.615850e-47 |
| Msa0420700 | Msa1099030 | 0.819066 | 1.411263e-52 | -8.615850e-47 |
| Msa0420700 | Msa1106560 | 0.810161 | 1.322890e-50 | -8.615850e-47 |
| Msa0420700 | Msa1125780 | 0.809333 | 1.992584e-50 | -8.615850e-47 |
| Msa0420700 | Msa1125950 | 0.809602 | 1.745141e-50 | -8.615850e-47 |
| Msa0420700 | Msa1129560 | 0.814291 | 1.660466e-51 | -8.615850e-47 |
| Msa0420700 | Msa1129720 | 0.834323 | 3.202989e-56 | -8.615850e-47 |
| Msa0420700 | Msa1166180 | 0.801401 | 9.161298e-49 | -8.615850e-47 |
| Msa0420700 | Msa1171340 | 0.805892 | 1.071595e-49 | -8.615850e-47 |
| Msa0420700 | Msa1176690 | 0.831025 | 2.109059e-55 | -8.615850e-47 |
| Msa0420700 | Msa1208980 | 0.800425 | 1.450318e-48 | -8.615850e-47 |
| Msa0420700 | Msa1261360 | 0.800448 | 1.434723e-48 | -8.615850e-47 |
| Msa0420700 | Msa1280120 | 0.816074 | 6.669634e-52 | -8.615850e-47 |
| Msa0420700 | Msa1283770 | 0.807786 | 4.263082e-50 | -8.615850e-47 |
| Msa0420700 | Msa1284030 | 0.810362 | 1.197300e-50 | -8.615850e-47 |
| Msa0420700 | Msa1303720 | 0.811464 | 6.909320e-51 | -8.615850e-47 |
| Msa0420700 | Msa1309240 | 0.817424 | 3.322111e-52 | -8.615850e-47 |
| Msa0420700 | Msa1323060 | 0.813933 | 1.991133e-51 | -8.615850e-47 |
| Msa0420700 | Msa1354040 | 0.811427 | 7.038555e-51 | -8.615850e-47 |
| Msa0420700 | Msa1375630 | 0.842821 | 2.045944e-58 | -8.615850e-47 |
| Msa0420700 | Msa1376530 | 0.845786 | 3.268422e-59 | -8.615850e-47 |
| Msa0420700 | Msa1398480 | 0.811744 | 6.006883e-51 | -8.615850e-47 |
| Msa0420700 | Msa1442030 | 0.819663 | 1.031696e-52 | -8.615850e-47 |
| Msa0246690 | Msa0420700 | 0.801162 | 1.025387e-48 | -8.615850e-47 |
| Msa0274780 | Msa0420700 | 0.811448 | 6.964597e-51 | -8.615850e-47 |
| Msa0289890 | Msa0420700 | 0.801532 | 8.612261e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420700 | MtrunA17_Chr3g0120471 | 98.635 | 513 | 2 | 3 | 1 | 510 | 1 | 511 | 0.0 | 1031 |
| Msa0420700 | MtrunA17_Chr5g0447341 | 89.515 | 515 | 49 | 3 | 1 | 510 | 1 | 515 | 0.0 | 902 |
| Msa0420700 | MtrunA17_Chr4g0074531 | 53.968 | 504 | 205 | 9 | 27 | 510 | 25 | 521 | 0.0 | 536 |
| Msa0420700 | MtrunA17_Chr7g0271011 | 51.336 | 524 | 220 | 13 | 11 | 510 | 24 | 536 | 0.0 | 518 |
| Msa0420700 | MtrunA17_Chr3g0141761 | 55.388 | 464 | 179 | 9 | 57 | 510 | 85 | 530 | 1.16e-179 | 515 |
| Msa0420700 | MtrunA17_Chr4g0035171 | 50.415 | 482 | 220 | 9 | 45 | 510 | 50 | 528 | 6.06e-167 | 482 |
| Msa0420700 | MtrunA17_Chr0c30g0494071 | 45.598 | 443 | 174 | 13 | 82 | 510 | 26 | 415 | 6.91e-117 | 350 |
| Msa0420700 | MtrunA17_Chr3g0144741 | 60.241 | 249 | 93 | 4 | 81 | 324 | 84 | 331 | 6.75e-95 | 292 |
| Msa0420700 | MtrunA17_Chr3g0144731 | 50.000 | 152 | 73 | 1 | 362 | 510 | 10 | 161 | 5.66e-47 | 160 |
| Msa0420700 | MtrunA17_Chr4g0077071 | 88.750 | 80 | 6 | 1 | 345 | 421 | 2 | 81 | 2.16e-42 | 145 |
| Msa0420700 | MtrunA17_Chr6g0454161 | 87.273 | 55 | 7 | 0 | 414 | 468 | 121 | 175 | 2.36e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420700 | AT5G48300.1 | 86.731 | 520 | 59 | 5 | 1 | 510 | 1 | 520 | 0.0 | 887 |
| Msa0420700 | AT5G19220.1 | 52.724 | 514 | 223 | 9 | 14 | 510 | 12 | 522 | 0.0 | 540 |
| Msa0420700 | AT1G27680.1 | 57.306 | 438 | 177 | 5 | 81 | 510 | 83 | 518 | 0.0 | 525 |
| Msa0420700 | AT4G39210.2 | 49.275 | 483 | 223 | 8 | 45 | 510 | 44 | 521 | 2.17e-166 | 481 |
| Msa0420700 | AT4G39210.1 | 49.275 | 483 | 223 | 8 | 45 | 510 | 44 | 521 | 2.17e-166 | 481 |
| Msa0420700 | AT2G21590.2 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0420700 | AT2G21590.3 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0420700 | AT2G21590.5 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0420700 | AT2G21590.4 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0420700 | AT2G21590.7 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0420700 | AT2G21590.1 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0420700 | AT2G21590.6 | 47.438 | 527 | 241 | 10 | 14 | 510 | 3 | 523 | 8.52e-164 | 474 |
| Msa0420700 | AT1G05610.2 | 45.940 | 468 | 233 | 7 | 50 | 510 | 28 | 482 | 2.21e-141 | 416 |
| Msa0420700 | AT1G05610.1 | 45.708 | 466 | 231 | 7 | 50 | 510 | 28 | 476 | 2.23e-141 | 416 |
Find 136 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGTTGATACTACTATTT+TGG | 0.118247 | 3_2:+69426708 | Msa0420700:intron |
| ATGCGGTGAGGCAATATTTA+TGG | 0.227198 | 3_2:+69426367 | Msa0420700:CDS |
| TAATGTGATTTGCTTCTTCT+AGG | 0.233733 | 3_2:+69428441 | Msa0420700:three_prime_UTR |
| TATTGAGGACACATTGTTAA+TGG | 0.236148 | 3_2:+69427533 | Msa0420700:CDS |
| CTTATTTATACGATGGATAC+TGG | 0.239223 | 3_2:+69427010 | Msa0420700:CDS |
| GCTTTCAACTGTTCTCCTTT+TGG | 0.240994 | 3_2:-69426597 | None:intergenic |
| AATGCCTTATATTGCTAGTA+TGG | 0.245338 | 3_2:+69426756 | Msa0420700:CDS |
| TTTCTGGTGCACGTTATATT+TGG | 0.248459 | 3_2:+69428224 | Msa0420700:three_prime_UTR |
| GGCTTTCTATAATGCAAATC+TGG | 0.253113 | 3_2:+69427053 | Msa0420700:CDS |
| ACACATTCCAGCAGTGAAAA+TGG | 0.258756 | 3_2:-69428172 | None:intergenic |
| CTGTTTAGGCAGTTGCTAAC+AGG | 0.290907 | 3_2:-69426068 | None:intergenic |
| TTCCTGGTGCAAACGACTTC+GGG | 0.322270 | 3_2:+69426830 | Msa0420700:CDS |
| CTTATTACCTGGAACCAGTT+TGG | 0.329824 | 3_2:-69426236 | None:intergenic |
| TTAGAATACTTAGTTCTTGC+TGG | 0.342172 | 3_2:+69426411 | Msa0420700:CDS |
| GATATCACTGACAGTGTTAT+TGG | 0.346869 | 3_2:+69427281 | Msa0420700:CDS |
| ATTGAGGACACATTGTTAAT+GGG | 0.348660 | 3_2:+69427534 | Msa0420700:CDS |
| ATTCCTGGTGCAACCGAACT+TGG | 0.354432 | 3_2:+69426862 | Msa0420700:CDS |
| TGAGAATCCAAACTGGTTCC+AGG | 0.364521 | 3_2:+69426229 | Msa0420700:CDS |
| ATTGACAAGAATGCTAGAAT+TGG | 0.372887 | 3_2:+69427762 | Msa0420700:CDS |
| TTTGCCCGCTTCTTGGTCAA+TGG | 0.378602 | 3_2:-69426002 | None:intergenic |
| CTGCTCCGCGACAAGTTTCC+TGG | 0.384999 | 3_2:+69426814 | Msa0420700:CDS |
| GGCAGTGTTCCGATTGGTAT+TGG | 0.386912 | 3_2:+69427711 | Msa0420700:CDS |
| TCTTTGATATGTTACTGTTT+AGG | 0.387072 | 3_2:-69426082 | None:intergenic |
| ACCTCGAAAAGCCATCTATA+TGG | 0.387393 | 3_2:+69424801 | Msa0420700:exon |
| CACATTCCAGCAGTGAAAAT+GGG | 0.394809 | 3_2:-69428171 | None:intergenic |
| AATAACACTGTCAGTGATAT+CGG | 0.401987 | 3_2:-69427279 | None:intergenic |
| ATACCCATACTAGCAATATA+AGG | 0.403964 | 3_2:-69426760 | None:intergenic |
| GCAAGAATTCTCATATCAAA+AGG | 0.408139 | 3_2:+69427733 | Msa0420700:CDS |
| TCAATTCAGCATCCTTGAAC+AGG | 0.414585 | 3_2:+69426123 | Msa0420700:CDS |
| ATGATGTAAATTTAATTATC+CGG | 0.421165 | 3_2:+69428285 | Msa0420700:three_prime_UTR |
| TTCGGGAGTGAAGTTATTCC+TGG | 0.424087 | 3_2:+69426847 | Msa0420700:CDS |
| AGCCATCTATATGGCTTCAA+TGG | 0.429672 | 3_2:+69424810 | Msa0420700:exon |
| TGGAACCAGTTTGGATTCTC+AGG | 0.429926 | 3_2:-69426227 | None:intergenic |
| TCTTACTCTCATCCCAAGTT+CGG | 0.430739 | 3_2:-69426875 | None:intergenic |
| GAAGCACGTGCCACTGCATT+CGG | 0.431857 | 3_2:+69426525 | Msa0420700:CDS |
| GCAAGAAGAAGAGAAAACTA+TGG | 0.442679 | 3_2:+69424958 | Msa0420700:CDS |
| TCGGCATCAAGCATCTTAGA+TGG | 0.445226 | 3_2:-69427260 | None:intergenic |
| CAACTAACTCTGCTAGCATC+TGG | 0.445818 | 3_2:-69425048 | None:intergenic |
| GCCCTTCATTGTTTCTCCCA+AGG | 0.449571 | 3_2:+69424987 | Msa0420700:CDS |
| GTGCTTGGTATTATACTTGG+AGG | 0.450420 | 3_2:+69425957 | Msa0420700:CDS |
| TACCGAGGTTGGGTGTAGAT+TGG | 0.453915 | 3_2:-69427230 | None:intergenic |
| AGCCATTGAAGCCATATAGA+TGG | 0.460362 | 3_2:-69424812 | None:intergenic |
| AGTGTGCTTGGTATTATACT+TGG | 0.461794 | 3_2:+69425954 | Msa0420700:CDS |
| GCAAAACCAGCTGTTCCTCT+TGG | 0.462674 | 3_2:+69426020 | Msa0420700:CDS |
| CATAATCCATTCGATACAAA+TGG | 0.464442 | 3_2:-69426437 | None:intergenic |
| TTTCCTGGTGCAAACGACTT+CGG | 0.467233 | 3_2:+69426829 | Msa0420700:CDS |
| CTCCCGAAGTCGTTTGCACC+AGG | 0.468057 | 3_2:-69426832 | None:intergenic |
| ACATTAAGTTACCTAAAATC+TGG | 0.468640 | 3_2:-69427096 | None:intergenic |
| TTTGTAGTTTATTATCAAAA+GGG | 0.474274 | 3_2:+69428353 | Msa0420700:three_prime_UTR |
| TGCTTGGTATTATACTTGGA+GGG | 0.476032 | 3_2:+69425958 | Msa0420700:CDS |
| TTCCTCTTGGAGCAAACTAT+AGG | 0.479293 | 3_2:+69426033 | Msa0420700:CDS |
| TCTAATGAAGATTGATGAAG+AGG | 0.482467 | 3_2:+69426548 | Msa0420700:CDS |
| AGTTACCTAAAATCTGGTAC+TGG | 0.484700 | 3_2:-69427090 | None:intergenic |
| AGTTGAAATAGAAAAGAAAA+AGG | 0.486377 | 3_2:-69428474 | None:intergenic |
| TCTTCTTCTTGCTGAAACTG+TGG | 0.487806 | 3_2:-69424947 | None:intergenic |
| ATGGAGGCAAATACCGAGGT+TGG | 0.492596 | 3_2:-69427241 | None:intergenic |
| AAAATTCATCATTCTGTCGT+TGG | 0.493813 | 3_2:+69427480 | Msa0420700:CDS |
| TATAGAGTAGAAGACTCTTT+CGG | 0.496006 | 3_2:+69428257 | Msa0420700:three_prime_UTR |
| TTGGAATCAGAAACAGCCTT+GGG | 0.500304 | 3_2:-69425003 | None:intergenic |
| TTTGCTCCAAGAGGAACAGC+TGG | 0.502679 | 3_2:-69426026 | None:intergenic |
| TGGGATTGTCACAGTAATCA+AGG | 0.507999 | 3_2:+69428073 | Msa0420700:CDS |
| GTGGCACGTGCTTCATCCAT+TGG | 0.509798 | 3_2:-69426516 | None:intergenic |
| ACGGGACAAGTGCCTGTTCA+AGG | 0.513295 | 3_2:-69426135 | None:intergenic |
| TGCTGCAGACAGATGCTGAT+AGG | 0.514976 | 3_2:+69427670 | Msa0420700:intron |
| GCTTGGTATTATACTTGGAG+GGG | 0.521975 | 3_2:+69425959 | Msa0420700:CDS |
| TGGAGGCAAATACCGAGGTT+GGG | 0.523382 | 3_2:-69427240 | None:intergenic |
| TTATCCATTGACCAAGAAGC+GGG | 0.524482 | 3_2:+69425998 | Msa0420700:CDS |
| ATCCCAAGTTCGGTTGCACC+AGG | 0.525786 | 3_2:-69426865 | None:intergenic |
| CTTGGTATTATACTTGGAGG+GGG | 0.527339 | 3_2:+69425960 | Msa0420700:CDS |
| GAATTTGCCGAGAAGCCAAA+AGG | 0.527957 | 3_2:+69426582 | Msa0420700:CDS |
| GAGATTTATACAAGCACATA+GGG | 0.529017 | 3_2:+69426461 | Msa0420700:CDS |
| GTAGTTTATTATCAAAAGGG+TGG | 0.529105 | 3_2:+69428356 | Msa0420700:three_prime_UTR |
| GTGTCTTTGAAAGTTGCAAA+AGG | 0.530776 | 3_2:-69428518 | None:intergenic |
| CAAGAATTCTCATATCAAAA+GGG | 0.532293 | 3_2:+69427734 | Msa0420700:CDS |
| TTCCTGGTGCAACCGAACTT+GGG | 0.535911 | 3_2:+69426863 | Msa0420700:CDS |
| CAATGGATAAAGACGCGTCC+CGG | 0.540169 | 3_2:-69425985 | None:intergenic |
| AGAGATTTATACAAGCACAT+AGG | 0.540805 | 3_2:+69426460 | Msa0420700:CDS |
| AGAGTCCTGAGAATCCAAAC+TGG | 0.541444 | 3_2:+69426222 | Msa0420700:CDS |
| GAAGATGAGGAAGAAGAAGA+AGG | 0.545219 | 3_2:-69424856 | None:intergenic |
| GCTTTCTATAATGCAAATCT+GGG | 0.546112 | 3_2:+69427054 | Msa0420700:CDS |
| GTGCAAGCTTATTTATACGA+TGG | 0.548370 | 3_2:+69427003 | Msa0420700:CDS |
| CCATGTTGCTCGCATATGCA+CGG | 0.549892 | 3_2:-69426154 | None:intergenic |
| TGTTTAGGCAGTTGCTAACA+GGG | 0.550516 | 3_2:-69426067 | None:intergenic |
| CGTGCATATGCGAGCAACAT+GGG | 0.553230 | 3_2:+69426155 | Msa0420700:CDS |
| ATCAGAAGGTGCAATTATTG+AGG | 0.553577 | 3_2:+69427518 | Msa0420700:CDS |
| TTTAGATGATGAAGAAGATG+AGG | 0.554142 | 3_2:-69424869 | None:intergenic |
| ATCCATTGGCAATGCAGCAA+CGG | 0.557333 | 3_2:-69426502 | None:intergenic |
| CACCGTTGCTGCATTGCCAA+TGG | 0.558190 | 3_2:+69426500 | Msa0420700:CDS |
| GAACAGCTCTGCTTCCGCGT+TGG | 0.559497 | 3_2:+69428200 | Msa0420700:three_prime_UTR |
| TTTGGAATCAGAAACAGCCT+TGG | 0.565050 | 3_2:-69425004 | None:intergenic |
| ATGCCTTATATTGCTAGTAT+GGG | 0.567877 | 3_2:+69426757 | Msa0420700:CDS |
| TTATTTATACGATGGATACT+GGG | 0.571162 | 3_2:+69427011 | Msa0420700:CDS |
| AGCCTTGGGAGAAACAATGA+AGG | 0.573342 | 3_2:-69424989 | None:intergenic |
| CAATGTGCAAGAAGCTGCAA+GGG | 0.577474 | 3_2:+69428025 | Msa0420700:CDS |
| GAATTCTTGCCAATACCAAT+CGG | 0.579260 | 3_2:-69427720 | None:intergenic |
| GGTGCACGTTATATTTGGCT+CGG | 0.579501 | 3_2:+69428229 | Msa0420700:three_prime_UTR |
| TTGAGGACACATTGTTAATG+GGG | 0.585614 | 3_2:+69427535 | Msa0420700:CDS |
| GGAAGACATCGGTACAATTG+AGG | 0.587153 | 3_2:+69427032 | Msa0420700:CDS |
| ACAATGTGCAAGAAGCTGCA+AGG | 0.590355 | 3_2:+69428024 | Msa0420700:CDS |
| TGGTGACCATTTGTATCGAA+TGG | 0.590390 | 3_2:+69426431 | Msa0420700:CDS |
| CATGTTGCTCGCATATGCAC+GGG | 0.591727 | 3_2:-69426153 | None:intergenic |
| AGCCTATAGTTTGCTCCAAG+AGG | 0.591774 | 3_2:-69426035 | None:intergenic |
| CTGCGATCTTGCATATCAGA+AGG | 0.601789 | 3_2:+69427504 | Msa0420700:CDS |
| ATGGCTTCAATGGCTTCGAT+CGG | 0.602135 | 3_2:+69424820 | Msa0420700:CDS |
| GAATGAGAGGTTGCGTGCAA+TGG | 0.614906 | 3_2:-69424893 | None:intergenic |
| GCTAAAGGCAGTGTTCCGAT+TGG | 0.615135 | 3_2:+69427705 | Msa0420700:CDS |
| CTAATGAAGATTGATGAAGA+GGG | 0.625579 | 3_2:+69426549 | Msa0420700:CDS |
| GAGGAAATAGTATACTAGAG+AGG | 0.626379 | 3_2:-69428131 | None:intergenic |
| TGCAGACAGATGCTGATAGG+AGG | 0.629052 | 3_2:+69427673 | Msa0420700:intron |
| CCGTGCATATGCGAGCAACA+TGG | 0.631421 | 3_2:+69426154 | Msa0420700:CDS |
| GGGTGTTGCACAGCAGCAAG+AGG | 0.633107 | 3_2:-69428150 | None:intergenic |
| ACATTCCAGCAGTGAAAATG+GGG | 0.634162 | 3_2:-69428170 | None:intergenic |
| TTTATCCATTGACCAAGAAG+CGG | 0.635327 | 3_2:+69425997 | Msa0420700:CDS |
| TCTCGATGACGAGAGAGCAA+AGG | 0.636235 | 3_2:+69426732 | Msa0420700:CDS |
| CTCCAATCTACACCCAACCT+CGG | 0.638794 | 3_2:+69427228 | Msa0420700:CDS |
| ACTGACAGTGTTATTGGTGA+AGG | 0.639826 | 3_2:+69427287 | Msa0420700:CDS |
| CTTTAGATGACAGTTCCACT+CGG | 0.643445 | 3_2:-69428107 | None:intergenic |
| TAGAATTGGAGACGATGTGA+AGG | 0.652530 | 3_2:+69427776 | Msa0420700:CDS |
| GCCTTGGGAGAAACAATGAA+GGG | 0.652631 | 3_2:-69424988 | None:intergenic |
| ATTACAGGGAACTGCAGATG+CGG | 0.654738 | 3_2:+69426350 | Msa0420700:intron |
| TGAGGACACATTGTTAATGG+GGG | 0.655322 | 3_2:+69427536 | Msa0420700:CDS |
| CTTCATTAGACCGAATGCAG+TGG | 0.656858 | 3_2:-69426535 | None:intergenic |
| TTCACTTCATCACAGCTCTG+TGG | 0.657603 | 3_2:+69424913 | Msa0420700:CDS |
| GCATCAAGCATCTTAGATGG+AGG | 0.658896 | 3_2:-69427257 | None:intergenic |
| GAAGCTGCAAGGGAAACTGA+AGG | 0.667346 | 3_2:+69428035 | Msa0420700:CDS |
| TAATGAAGATTGATGAAGAG+GGG | 0.674324 | 3_2:+69426550 | Msa0420700:CDS |
| CAAACAAAGAAATCAATGTG+TGG | 0.677196 | 3_2:-69424720 | None:intergenic |
| AGGGAACTGCAGATGCGGTG+AGG | 0.678286 | 3_2:+69426355 | Msa0420700:intron |
| TTGCACCAGGAAACTTGTCG+CGG | 0.680161 | 3_2:-69426819 | None:intergenic |
| GATGGATACTGGGAAGACAT+CGG | 0.689450 | 3_2:+69427021 | Msa0420700:CDS |
| GCATATGCGAGCAACATGGG+TGG | 0.694220 | 3_2:+69426158 | Msa0420700:CDS |
| AAGGATGCATTGATTCCGAG+TGG | 0.694244 | 3_2:+69428092 | Msa0420700:CDS |
| GCTGTGATGAAGTGAATGAG+AGG | 0.715121 | 3_2:-69424906 | None:intergenic |
| ATGCTGAATTGAATTGTGTG+AGG | 0.733174 | 3_2:-69426112 | None:intergenic |
| TTAGATGGAGGCAAATACCG+AGG | 0.735785 | 3_2:-69427245 | None:intergenic |
| CGTGCACCAGAAAACCAACG+CGG | 0.814333 | 3_2:-69428214 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTAATCAAAGTTTAAA+TGG | + | chr3_2:69427946-69427965 | Msa0420700:intron | 10.0% |
| !!! | TGATTTTCTCAAATTATTAT+CGG | - | chr3_2:69425556-69425575 | None:intergenic | 15.0% |
| !! | CAAAAAAAGAACATATTATA+TGG | - | chr3_2:69426636-69426655 | None:intergenic | 15.0% |
| !! | ATGATGTAAATTTAATTATC+CGG | + | chr3_2:69428285-69428304 | Msa0420700:three_prime_UTR | 15.0% |
| !!! | TTTTGTAGTTTATTATCAAA+AGG | + | chr3_2:69428352-69428371 | Msa0420700:three_prime_UTR | 15.0% |
| !! | TTTGTAGTTTATTATCAAAA+GGG | + | chr3_2:69428353-69428372 | Msa0420700:three_prime_UTR | 15.0% |
| !!! | TAATTTGAGTTTGTTGATAA+TGG | + | chr3_2:69425211-69425230 | Msa0420700:intron | 20.0% |
| !!! | AATTTGAGTTTGTTGATAAT+GGG | + | chr3_2:69425212-69425231 | Msa0420700:intron | 20.0% |
| !!! | TTGATATTGTAGTTTGTTTT+TGG | + | chr3_2:69425240-69425259 | Msa0420700:intron | 20.0% |
| !!! | TGATATTGTAGTTTGTTTTT+GGG | + | chr3_2:69425241-69425260 | Msa0420700:intron | 20.0% |
| !!! | GATGAATTTTTGACATAAAA+TGG | + | chr3_2:69425293-69425312 | Msa0420700:intron | 20.0% |
| !!! | TTTATTTGAGTTTTTGTATG+TGG | + | chr3_2:69425362-69425381 | Msa0420700:intron | 20.0% |
| !! | ACTATCACACTAATTTAAAA+TGG | + | chr3_2:69425481-69425500 | Msa0420700:intron | 20.0% |
| !! | TTAGGAACTATATTTGAATT+TGG | + | chr3_2:69425884-69425903 | Msa0420700:intron | 20.0% |
| !! | AACTATATTTGAATTTGGTA+GGG | + | chr3_2:69425889-69425908 | Msa0420700:intron | 20.0% |
| !!! | GTAATGTAATGATTTTATGA+TGG | + | chr3_2:69425924-69425943 | Msa0420700:intron | 20.0% |
| !! | AACAACAGAAAACATATATA+AGG | - | chr3_2:69426265-69426284 | None:intergenic | 20.0% |
| !!! | AGTTATGACTTTTTTGTATT+AGG | + | chr3_2:69426690-69426709 | Msa0420700:intron | 20.0% |
| !!! | AGGGAAAAATATGAATTTTT+TGG | - | chr3_2:69427336-69427355 | None:intergenic | 20.0% |
| !! | ACAAATTTGTACATATTTCT+TGG | + | chr3_2:69427378-69427397 | Msa0420700:intron | 20.0% |
| !!! | AAGGTTATTTCATAAAAAGT+GGG | + | chr3_2:69428054-69428073 | Msa0420700:CDS | 20.0% |
| !! | AGTTGAAATAGAAAAGAAAA+AGG | - | chr3_2:69428477-69428496 | None:intergenic | 20.0% |
| !!! | TTTCTCAATGTTTTAGCAAT+TGG | + | chr3_2:69425181-69425200 | Msa0420700:intron | 25.0% |
| !!! | TTCTCAATGTTTTAGCAATT+GGG | + | chr3_2:69425182-69425201 | Msa0420700:intron | 25.0% |
| !!! | AATTCATCATTTTTCCAATC+TGG | - | chr3_2:69425281-69425300 | None:intergenic | 25.0% |
| !! | ATGTTACGTGTTTTATGTAT+TGG | + | chr3_2:69425334-69425353 | Msa0420700:intron | 25.0% |
| !! | TGTTACGTGTTTTATGTATT+GGG | + | chr3_2:69425335-69425354 | Msa0420700:intron | 25.0% |
| ! | TTGACATTATCAATCATATG+AGG | - | chr3_2:69425439-69425458 | None:intergenic | 25.0% |
| ! | ATTCACACAATATTATCATG+TGG | + | chr3_2:69425758-69425777 | Msa0420700:intron | 25.0% |
| ! | TTCACACAATATTATCATGT+GGG | + | chr3_2:69425759-69425778 | Msa0420700:intron | 25.0% |
| ! | TAATAGTTCTTGCTTTGTAT+TGG | - | chr3_2:69425820-69425839 | None:intergenic | 25.0% |
| ! | GAACTATATTTGAATTTGGT+AGG | + | chr3_2:69425888-69425907 | Msa0420700:intron | 25.0% |
| ! | ACTATATTTGAATTTGGTAG+GGG | + | chr3_2:69425890-69425909 | Msa0420700:intron | 25.0% |
| ! | TCTTTGATATGTTACTGTTT+AGG | - | chr3_2:69426085-69426104 | None:intergenic | 25.0% |
| !!! | TTAGGTTGATACTACTATTT+TGG | + | chr3_2:69426708-69426727 | Msa0420700:intron | 25.0% |
| !!! | TAGGTTGATACTACTATTTT+GGG | + | chr3_2:69426709-69426728 | Msa0420700:intron | 25.0% |
| ! | TTATTTATACGATGGATACT+GGG | + | chr3_2:69427011-69427030 | Msa0420700:CDS | 25.0% |
| ! | ACATTAAGTTACCTAAAATC+TGG | - | chr3_2:69427099-69427118 | None:intergenic | 25.0% |
| !!! | GATTTTAGGTAACTTAATGT+TGG | + | chr3_2:69427099-69427118 | Msa0420700:intron | 25.0% |
| ! | CAGTAGGATGAATAAATAAA+AGG | - | chr3_2:69427125-69427144 | None:intergenic | 25.0% |
| ! | GTTAAAATAAAACAGACAGT+AGG | - | chr3_2:69427141-69427160 | None:intergenic | 25.0% |
| ! | AACAAACATTAAACATAAGC+TGG | - | chr3_2:69427175-69427194 | None:intergenic | 25.0% |
| ! | AGCTTATGTTTAATGTTTGT+TGG | + | chr3_2:69427174-69427193 | Msa0420700:intron | 25.0% |
| ! | GCTTATGTTTAATGTTTGTT+GGG | + | chr3_2:69427175-69427194 | Msa0420700:intron | 25.0% |
| ! | GGAACAAAATATTGAAAACA+AGG | - | chr3_2:69427450-69427469 | None:intergenic | 25.0% |
| !!! | TTCAATATTGGTTTTCTGAT+TGG | + | chr3_2:69427645-69427664 | Msa0420700:intron | 25.0% |
| ! | CAAGAATTCTCATATCAAAA+GGG | + | chr3_2:69427734-69427753 | Msa0420700:CDS | 25.0% |
| !! | GAAGGTTATTTCATAAAAAG+TGG | + | chr3_2:69428053-69428072 | Msa0420700:CDS | 25.0% |
| CAAACAAAGAAATCAATGTG+TGG | - | chr3_2:69424723-69424742 | None:intergenic | 30.0% | |
| TTTAGATGATGAAGAAGATG+AGG | - | chr3_2:69424872-69424891 | None:intergenic | 30.0% | |
| TAGTGAGAGATAGAGAAAAT+GGG | + | chr3_2:69425120-69425139 | Msa0420700:intron | 30.0% | |
| !!! | GTTTGTTTTTGGGTTTCTTA+AGG | + | chr3_2:69425251-69425270 | Msa0420700:intron | 30.0% |
| !! | TTTGAGTTTTTGTATGTGGT+TGG | + | chr3_2:69425366-69425385 | Msa0420700:intron | 30.0% |
| AGTGCAAATAATGTCATGAT+TGG | - | chr3_2:69425464-69425483 | None:intergenic | 30.0% | |
| TCTCAAATTATTATCGGTGT+CGG | - | chr3_2:69425550-69425569 | None:intergenic | 30.0% | |
| ! | TGCATTTTGAATATGAAGCA+AGG | - | chr3_2:69425671-69425690 | None:intergenic | 30.0% |
| ATATAAGGTTGCTTATTACC+TGG | - | chr3_2:69426250-69426269 | None:intergenic | 30.0% | |
| TTTATTGCTATGATCACTTG+TGG | + | chr3_2:69426289-69426308 | Msa0420700:intron | 30.0% | |
| TTGAATGCTTTCACTATTAC+AGG | + | chr3_2:69426335-69426354 | Msa0420700:intron | 30.0% | |
| TGAATGCTTTCACTATTACA+GGG | + | chr3_2:69426336-69426355 | Msa0420700:intron | 30.0% | |
| ! | TTAGAATACTTAGTTCTTGC+TGG | + | chr3_2:69426411-69426430 | Msa0420700:CDS | 30.0% |
| CATAATCCATTCGATACAAA+TGG | - | chr3_2:69426440-69426459 | None:intergenic | 30.0% | |
| AGAGATTTATACAAGCACAT+AGG | + | chr3_2:69426460-69426479 | Msa0420700:CDS | 30.0% | |
| GAGATTTATACAAGCACATA+GGG | + | chr3_2:69426461-69426480 | Msa0420700:CDS | 30.0% | |
| TCTAATGAAGATTGATGAAG+AGG | + | chr3_2:69426548-69426567 | Msa0420700:CDS | 30.0% | |
| CTAATGAAGATTGATGAAGA+GGG | + | chr3_2:69426549-69426568 | Msa0420700:CDS | 30.0% | |
| TAATGAAGATTGATGAAGAG+GGG | + | chr3_2:69426550-69426569 | Msa0420700:CDS | 30.0% | |
| AATGCCTTATATTGCTAGTA+TGG | + | chr3_2:69426756-69426775 | Msa0420700:CDS | 30.0% | |
| ATGCCTTATATTGCTAGTAT+GGG | + | chr3_2:69426757-69426776 | Msa0420700:CDS | 30.0% | |
| ATACCCATACTAGCAATATA+AGG | - | chr3_2:69426763-69426782 | None:intergenic | 30.0% | |
| CTTTGTATTGAACAGATAGA+AGG | - | chr3_2:69426904-69426923 | None:intergenic | 30.0% | |
| CTTATTTATACGATGGATAC+TGG | + | chr3_2:69427010-69427029 | Msa0420700:CDS | 30.0% | |
| GCTTTCTATAATGCAAATCT+GGG | + | chr3_2:69427054-69427073 | Msa0420700:CDS | 30.0% | |
| ! | TTTAATGTTTGTTGGGACAT+TGG | + | chr3_2:69427182-69427201 | Msa0420700:intron | 30.0% |
| AATAACACTGTCAGTGATAT+CGG | - | chr3_2:69427282-69427301 | None:intergenic | 30.0% | |
| AAAATTCATCATTCTGTCGT+TGG | + | chr3_2:69427480-69427499 | Msa0420700:CDS | 30.0% | |
| TATTGAGGACACATTGTTAA+TGG | + | chr3_2:69427533-69427552 | Msa0420700:CDS | 30.0% | |
| ATTGAGGACACATTGTTAAT+GGG | + | chr3_2:69427534-69427553 | Msa0420700:CDS | 30.0% | |
| TGTCATATTGTGACGTTAAT+AGG | + | chr3_2:69427591-69427610 | Msa0420700:intron | 30.0% | |
| !! | GGAAGTACTAACTTCAATAT+TGG | + | chr3_2:69427633-69427652 | Msa0420700:intron | 30.0% |
| GCAAGAATTCTCATATCAAA+AGG | + | chr3_2:69427733-69427752 | Msa0420700:CDS | 30.0% | |
| ATTGACAAGAATGCTAGAAT+TGG | + | chr3_2:69427762-69427781 | Msa0420700:CDS | 30.0% | |
| TATAGAGTAGAAGACTCTTT+CGG | + | chr3_2:69428257-69428276 | Msa0420700:three_prime_UTR | 30.0% | |
| !! | CTAAGAAGCTTTTATTTGAC+CGG | - | chr3_2:69428307-69428326 | None:intergenic | 30.0% |
| GTAGTTTATTATCAAAAGGG+TGG | + | chr3_2:69428356-69428375 | Msa0420700:three_prime_UTR | 30.0% | |
| !! | TAATGTGATTTGCTTCTTCT+AGG | + | chr3_2:69428441-69428460 | Msa0420700:three_prime_UTR | 30.0% |
| GCAAGAAGAAGAGAAAACTA+TGG | + | chr3_2:69424958-69424977 | Msa0420700:CDS | 35.0% | |
| ! | AAGACAAGTCTGTGAGTTTT+TGG | - | chr3_2:69425025-69425044 | None:intergenic | 35.0% |
| GTAGTGAGAGATAGAGAAAA+TGG | + | chr3_2:69425119-69425138 | Msa0420700:intron | 35.0% | |
| AGTGAGAGATAGAGAAAATG+GGG | + | chr3_2:69425121-69425140 | Msa0420700:intron | 35.0% | |
| TTTCTTAAGGTAGACCAGAT+TGG | + | chr3_2:69425264-69425283 | Msa0420700:intron | 35.0% | |
| TGGTCAAAATCTATGAAGCA+CGG | + | chr3_2:69425501-69425520 | Msa0420700:intron | 35.0% | |
| CATATATGTCAATGTCGTGA+AGG | + | chr3_2:69425592-69425611 | Msa0420700:intron | 35.0% | |
| ACTCAATTGCACAAACAATG+AGG | - | chr3_2:69425707-69425726 | None:intergenic | 35.0% | |
| !!! | AACCCTGCATTTTTTGTGTT+AGG | + | chr3_2:69425853-69425872 | Msa0420700:intron | 35.0% |
| TGCCTAACACAAAAAATGCA+GGG | - | chr3_2:69425858-69425877 | None:intergenic | 35.0% | |
| ATGCCTAACACAAAAAATGC+AGG | - | chr3_2:69425859-69425878 | None:intergenic | 35.0% | |
| TTGTGTTAGGCATGTTTGTT+AGG | + | chr3_2:69425866-69425885 | Msa0420700:intron | 35.0% | |
| AGTGTGCTTGGTATTATACT+TGG | + | chr3_2:69425954-69425973 | Msa0420700:CDS | 35.0% | |
| TGCTTGGTATTATACTTGGA+GGG | + | chr3_2:69425958-69425977 | Msa0420700:CDS | 35.0% | |
| TTTATCCATTGACCAAGAAG+CGG | + | chr3_2:69425997-69426016 | Msa0420700:CDS | 35.0% | |
| ATGCTGAATTGAATTGTGTG+AGG | - | chr3_2:69426115-69426134 | None:intergenic | 35.0% | |
| ATGGGTGGTTACAAAAATGA+AGG | + | chr3_2:69426173-69426192 | Msa0420700:CDS | 35.0% | |
| CAAAAATGAAGGTTTCGTTG+AGG | + | chr3_2:69426184-69426203 | Msa0420700:CDS | 35.0% | |
| ! | GCAATATTTATGGCTTTTCG+AGG | + | chr3_2:69426377-69426396 | Msa0420700:CDS | 35.0% |
| AGTTGAAAGCTATGAAAGTG+AGG | + | chr3_2:69426610-69426629 | Msa0420700:intron | 35.0% | |
| GTGCAAGCTTATTTATACGA+TGG | + | chr3_2:69427003-69427022 | Msa0420700:CDS | 35.0% | |
| GGCTTTCTATAATGCAAATC+TGG | + | chr3_2:69427053-69427072 | Msa0420700:CDS | 35.0% | |
| !!! | AAAATCTGGTACTGGCTTTT+TGG | - | chr3_2:69427085-69427104 | None:intergenic | 35.0% |
| ! | AAAAGCCAGTACCAGATTTT+AGG | + | chr3_2:69427085-69427104 | Msa0420700:CDS | 35.0% |
| AGTTACCTAAAATCTGGTAC+TGG | - | chr3_2:69427093-69427112 | None:intergenic | 35.0% | |
| ACATAAGCTGGCTGTTATTA+TGG | - | chr3_2:69427163-69427182 | None:intergenic | 35.0% | |
| GATATCACTGACAGTGTTAT+TGG | + | chr3_2:69427281-69427300 | Msa0420700:CDS | 35.0% | |
| TGGTGAAGGATGTGTAATTA+AGG | + | chr3_2:69427301-69427320 | Msa0420700:intron | 35.0% | |
| ATACTAGTAACGATGGAGTA+GGG | - | chr3_2:69427355-69427374 | None:intergenic | 35.0% | |
| ! | TGATGAATTTTGCAGTTCTG+TGG | - | chr3_2:69427471-69427490 | None:intergenic | 35.0% |
| ! | ATCAGAAGGTGCAATTATTG+AGG | + | chr3_2:69427518-69427537 | Msa0420700:CDS | 35.0% |
| TTGAGGACACATTGTTAATG+GGG | + | chr3_2:69427535-69427554 | Msa0420700:CDS | 35.0% | |
| !! | GGAATTGACTTTAGTTTGAC+TGG | + | chr3_2:69427612-69427631 | Msa0420700:intron | 35.0% |
| GAATTCTTGCCAATACCAAT+CGG | - | chr3_2:69427723-69427742 | None:intergenic | 35.0% | |
| GAGGAAATAGTATACTAGAG+AGG | - | chr3_2:69428134-69428153 | None:intergenic | 35.0% | |
| ! | TTTCTGGTGCACGTTATATT+TGG | + | chr3_2:69428224-69428243 | Msa0420700:three_prime_UTR | 35.0% |
| ACCTCGAAAAGCCATCTATA+TGG | + | chr3_2:69424801-69424820 | Msa0420700:exon | 40.0% | |
| AGCCATCTATATGGCTTCAA+TGG | + | chr3_2:69424810-69424829 | Msa0420700:exon | 40.0% | |
| AGCCATTGAAGCCATATAGA+TGG | - | chr3_2:69424815-69424834 | None:intergenic | 40.0% | |
| GAAGATGAGGAAGAAGAAGA+AGG | - | chr3_2:69424859-69424878 | None:intergenic | 40.0% | |
| TCTTCTTCTTGCTGAAACTG+TGG | - | chr3_2:69424950-69424969 | None:intergenic | 40.0% | |
| TTGGAATCAGAAACAGCCTT+GGG | - | chr3_2:69425006-69425025 | None:intergenic | 40.0% | |
| ! | TTTGGAATCAGAAACAGCCT+TGG | - | chr3_2:69425007-69425026 | None:intergenic | 40.0% |
| TATGAAGCAAGGACATTCCT+TGG | - | chr3_2:69425660-69425679 | None:intergenic | 40.0% | |
| ! | CAATATTATCATGTGGGCTG+TGG | + | chr3_2:69425765-69425784 | Msa0420700:intron | 40.0% |
| GTGCTTGGTATTATACTTGG+AGG | + | chr3_2:69425957-69425976 | Msa0420700:CDS | 40.0% | |
| GCTTGGTATTATACTTGGAG+GGG | + | chr3_2:69425959-69425978 | Msa0420700:CDS | 40.0% | |
| CTTGGTATTATACTTGGAGG+GGG | + | chr3_2:69425960-69425979 | Msa0420700:CDS | 40.0% | |
| TTATCCATTGACCAAGAAGC+GGG | + | chr3_2:69425998-69426017 | Msa0420700:CDS | 40.0% | |
| TTCCTCTTGGAGCAAACTAT+AGG | + | chr3_2:69426033-69426052 | Msa0420700:CDS | 40.0% | |
| TGTTTAGGCAGTTGCTAACA+GGG | - | chr3_2:69426070-69426089 | None:intergenic | 40.0% | |
| TCAATTCAGCATCCTTGAAC+AGG | + | chr3_2:69426123-69426142 | Msa0420700:CDS | 40.0% | |
| CTTATTACCTGGAACCAGTT+TGG | - | chr3_2:69426239-69426258 | None:intergenic | 40.0% | |
| ATGCGGTGAGGCAATATTTA+TGG | + | chr3_2:69426367-69426386 | Msa0420700:CDS | 40.0% | |
| TGGTGACCATTTGTATCGAA+TGG | + | chr3_2:69426431-69426450 | Msa0420700:CDS | 40.0% | |
| ! | GCTTTCAACTGTTCTCCTTT+TGG | - | chr3_2:69426600-69426619 | None:intergenic | 40.0% |
| TCTTACTCTCATCCCAAGTT+CGG | - | chr3_2:69426878-69426897 | None:intergenic | 40.0% | |
| ACGTATTTGCGAATCTGCTT+AGG | + | chr3_2:69426981-69427000 | Msa0420700:intron | 40.0% | |
| ! | ACTGACAGTGTTATTGGTGA+AGG | + | chr3_2:69427287-69427306 | Msa0420700:CDS | 40.0% |
| CATACTAGTAACGATGGAGT+AGG | - | chr3_2:69427356-69427375 | None:intergenic | 40.0% | |
| CTACTCCATCGTTACTAGTA+TGG | + | chr3_2:69427354-69427373 | Msa0420700:intron | 40.0% | |
| TTGTGCCATACTAGTAACGA+TGG | - | chr3_2:69427362-69427381 | None:intergenic | 40.0% | |
| TGAGGACACATTGTTAATGG+GGG | + | chr3_2:69427536-69427555 | Msa0420700:CDS | 40.0% | |
| AATGGGGGCAGATTATTATG+AGG | + | chr3_2:69427551-69427570 | Msa0420700:CDS | 40.0% | |
| ! | AGATGCTGATAGGAGGTTTT+TGG | + | chr3_2:69427680-69427699 | Msa0420700:CDS | 40.0% |
| TAGAATTGGAGACGATGTGA+AGG | + | chr3_2:69427776-69427795 | Msa0420700:CDS | 40.0% | |
| AGAGAACAATGCACTTAGAC+AGG | - | chr3_2:69427852-69427871 | None:intergenic | 40.0% | |
| CATGAATGTGGAGCAAGATA+TGG | - | chr3_2:69427882-69427901 | None:intergenic | 40.0% | |
| TGGGATTGTCACAGTAATCA+AGG | + | chr3_2:69428073-69428092 | Msa0420700:CDS | 40.0% | |
| CTTTAGATGACAGTTCCACT+CGG | - | chr3_2:69428110-69428129 | None:intergenic | 40.0% | |
| ACATTCCAGCAGTGAAAATG+GGG | - | chr3_2:69428173-69428192 | None:intergenic | 40.0% | |
| CACATTCCAGCAGTGAAAAT+GGG | - | chr3_2:69428174-69428193 | None:intergenic | 40.0% | |
| ACACATTCCAGCAGTGAAAA+TGG | - | chr3_2:69428175-69428194 | None:intergenic | 40.0% | |
| ! | GCCATATAGATGGCTTTTCG+AGG | - | chr3_2:69424805-69424824 | None:intergenic | 45.0% |
| ATGGCTTCAATGGCTTCGAT+CGG | + | chr3_2:69424820-69424839 | Msa0420700:CDS | 45.0% | |
| GCTGTGATGAAGTGAATGAG+AGG | - | chr3_2:69424909-69424928 | None:intergenic | 45.0% | |
| TTCACTTCATCACAGCTCTG+TGG | + | chr3_2:69424913-69424932 | Msa0420700:CDS | 45.0% | |
| GCCTTGGGAGAAACAATGAA+GGG | - | chr3_2:69424991-69425010 | None:intergenic | 45.0% | |
| AGCCTTGGGAGAAACAATGA+AGG | - | chr3_2:69424992-69425011 | None:intergenic | 45.0% | |
| CAACTAACTCTGCTAGCATC+TGG | - | chr3_2:69425051-69425070 | None:intergenic | 45.0% | |
| ! | TGTCAATGTCGTGAAGGTGT+CGG | + | chr3_2:69425598-69425617 | Msa0420700:intron | 45.0% |
| GCAAGGACATTCCTTGGATT+AGG | - | chr3_2:69425654-69425673 | None:intergenic | 45.0% | |
| ! | GATGGTTTTCAGAGTGTGCT+TGG | + | chr3_2:69425942-69425961 | Msa0420700:intron | 45.0% |
| !! | AGCCTATAGTTTGCTCCAAG+AGG | - | chr3_2:69426038-69426057 | None:intergenic | 45.0% |
| CTGTTTAGGCAGTTGCTAAC+AGG | - | chr3_2:69426071-69426090 | None:intergenic | 45.0% | |
| AGAGTCCTGAGAATCCAAAC+TGG | + | chr3_2:69426222-69426241 | Msa0420700:CDS | 45.0% | |
| TGGAACCAGTTTGGATTCTC+AGG | - | chr3_2:69426230-69426249 | None:intergenic | 45.0% | |
| ! | TGAGAATCCAAACTGGTTCC+AGG | + | chr3_2:69426229-69426248 | Msa0420700:CDS | 45.0% |
| ATTACAGGGAACTGCAGATG+CGG | + | chr3_2:69426350-69426369 | Msa0420700:intron | 45.0% | |
| ATCCATTGGCAATGCAGCAA+CGG | - | chr3_2:69426505-69426524 | None:intergenic | 45.0% | |
| CTTCATTAGACCGAATGCAG+TGG | - | chr3_2:69426538-69426557 | None:intergenic | 45.0% | |
| GAATTTGCCGAGAAGCCAAA+AGG | + | chr3_2:69426582-69426601 | Msa0420700:CDS | 45.0% | |
| !!! | CTGTTCTCCTTTTGGCTTCT+CGG | - | chr3_2:69426592-69426611 | None:intergenic | 45.0% |
| TTTCCTGGTGCAAACGACTT+CGG | + | chr3_2:69426829-69426848 | Msa0420700:CDS | 45.0% | |
| TTCGGGAGTGAAGTTATTCC+TGG | + | chr3_2:69426847-69426866 | Msa0420700:CDS | 45.0% | |
| GATGGATACTGGGAAGACAT+CGG | + | chr3_2:69427021-69427040 | Msa0420700:CDS | 45.0% | |
| GGAAGACATCGGTACAATTG+AGG | + | chr3_2:69427032-69427051 | Msa0420700:CDS | 45.0% | |
| TTAGATGGAGGCAAATACCG+AGG | - | chr3_2:69427248-69427267 | None:intergenic | 45.0% | |
| GCATCAAGCATCTTAGATGG+AGG | - | chr3_2:69427260-69427279 | None:intergenic | 45.0% | |
| TCGGCATCAAGCATCTTAGA+TGG | - | chr3_2:69427263-69427282 | None:intergenic | 45.0% | |
| CTGCGATCTTGCATATCAGA+AGG | + | chr3_2:69427504-69427523 | Msa0420700:CDS | 45.0% | |
| !!! | AGGAGGTTTTTGGCTGCTAA+AGG | + | chr3_2:69427690-69427709 | Msa0420700:CDS | 45.0% |
| ATCTTGCTCCACATTCATGC+TGG | + | chr3_2:69427883-69427902 | Msa0420700:intron | 45.0% | |
| TCACTCTTCCAGCATGAATG+TGG | - | chr3_2:69427894-69427913 | None:intergenic | 45.0% | |
| ACATTCATGCTGGAAGAGTG+AGG | + | chr3_2:69427893-69427912 | Msa0420700:intron | 45.0% | |
| CATTCATGCTGGAAGAGTGA+GGG | + | chr3_2:69427894-69427913 | Msa0420700:intron | 45.0% | |
| ACAATGTGCAAGAAGCTGCA+AGG | + | chr3_2:69428024-69428043 | Msa0420700:CDS | 45.0% | |
| CAATGTGCAAGAAGCTGCAA+GGG | + | chr3_2:69428025-69428044 | Msa0420700:CDS | 45.0% | |
| !! | AAGGATGCATTGATTCCGAG+TGG | + | chr3_2:69428092-69428111 | Msa0420700:CDS | 45.0% |
| GGTGCACGTTATATTTGGCT+CGG | + | chr3_2:69428229-69428248 | Msa0420700:three_prime_UTR | 45.0% | |
| GAATGAGAGGTTGCGTGCAA+TGG | - | chr3_2:69424896-69424915 | None:intergenic | 50.0% | |
| ! | GCCCTTCATTGTTTCTCCCA+AGG | + | chr3_2:69424987-69425006 | Msa0420700:CDS | 50.0% |
| GATTAGGTGTGTCCCTGTGT+CGG | - | chr3_2:69425638-69425657 | None:intergenic | 50.0% | |
| ACAGGGACACACCTAATCCA+AGG | + | chr3_2:69425640-69425659 | Msa0420700:intron | 50.0% | |
| ! | ATTATACTTGGAGGGGGTGC+CGG | + | chr3_2:69425966-69425985 | Msa0420700:CDS | 50.0% |
| CAATGGATAAAGACGCGTCC+CGG | - | chr3_2:69425988-69426007 | None:intergenic | 50.0% | |
| TTTGCCCGCTTCTTGGTCAA+TGG | - | chr3_2:69426005-69426024 | None:intergenic | 50.0% | |
| GCAAAACCAGCTGTTCCTCT+TGG | + | chr3_2:69426020-69426039 | Msa0420700:CDS | 50.0% | |
| TTTGCTCCAAGAGGAACAGC+TGG | - | chr3_2:69426029-69426048 | None:intergenic | 50.0% | |
| CATGTTGCTCGCATATGCAC+GGG | - | chr3_2:69426156-69426175 | None:intergenic | 50.0% | |
| CCATGTTGCTCGCATATGCA+CGG | - | chr3_2:69426157-69426176 | None:intergenic | 50.0% | |
| CGTGCATATGCGAGCAACAT+GGG | + | chr3_2:69426155-69426174 | Msa0420700:CDS | 50.0% | |
| TCTCGATGACGAGAGAGCAA+AGG | + | chr3_2:69426732-69426751 | Msa0420700:CDS | 50.0% | |
| TTGCACCAGGAAACTTGTCG+CGG | - | chr3_2:69426822-69426841 | None:intergenic | 50.0% | |
| TTCCTGGTGCAAACGACTTC+GGG | + | chr3_2:69426830-69426849 | Msa0420700:CDS | 50.0% | |
| ATTCCTGGTGCAACCGAACT+TGG | + | chr3_2:69426862-69426881 | Msa0420700:CDS | 50.0% | |
| TTCCTGGTGCAACCGAACTT+GGG | + | chr3_2:69426863-69426882 | Msa0420700:CDS | 50.0% | |
| CTCCAATCTACACCCAACCT+CGG | + | chr3_2:69427228-69427247 | Msa0420700:CDS | 50.0% | |
| TACCGAGGTTGGGTGTAGAT+TGG | - | chr3_2:69427233-69427252 | None:intergenic | 50.0% | |
| TGGAGGCAAATACCGAGGTT+GGG | - | chr3_2:69427243-69427262 | None:intergenic | 50.0% | |
| ATGGAGGCAAATACCGAGGT+TGG | - | chr3_2:69427244-69427263 | None:intergenic | 50.0% | |
| TGCTGCAGACAGATGCTGAT+AGG | + | chr3_2:69427670-69427689 | Msa0420700:intron | 50.0% | |
| TGCAGACAGATGCTGATAGG+AGG | + | chr3_2:69427673-69427692 | Msa0420700:intron | 50.0% | |
| GCTAAAGGCAGTGTTCCGAT+TGG | + | chr3_2:69427705-69427724 | Msa0420700:CDS | 50.0% | |
| GGCAGTGTTCCGATTGGTAT+TGG | + | chr3_2:69427711-69427730 | Msa0420700:CDS | 50.0% | |
| TGCTGGAAGAGTGAGGGAAA+TGG | + | chr3_2:69427900-69427919 | Msa0420700:intron | 50.0% | |
| GCTGGAAGAGTGAGGGAAAT+GGG | + | chr3_2:69427901-69427920 | Msa0420700:intron | 50.0% | |
| CTGGAAGAGTGAGGGAAATG+GGG | + | chr3_2:69427902-69427921 | Msa0420700:intron | 50.0% | |
| TGGAAGAGTGAGGGAAATGG+GGG | + | chr3_2:69427903-69427922 | Msa0420700:intron | 50.0% | |
| GAAGCTGCAAGGGAAACTGA+AGG | + | chr3_2:69428035-69428054 | Msa0420700:CDS | 50.0% | |
| ! | CAACACCCCATTTTCACTGC+TGG | + | chr3_2:69428165-69428184 | Msa0420700:three_prime_UTR | 50.0% |
| ! | GTGGGCTGTGGCTGTTAGAT+TGG | + | chr3_2:69425777-69425796 | Msa0420700:intron | 55.0% |
| !! | TTATACTTGGAGGGGGTGCC+GGG | + | chr3_2:69425967-69425986 | Msa0420700:CDS | 55.0% |
| !!! | AGCTGGTTTTGCCCGCTTCT+TGG | - | chr3_2:69426012-69426031 | None:intergenic | 55.0% |
| ACGGGACAAGTGCCTGTTCA+AGG | - | chr3_2:69426138-69426157 | None:intergenic | 55.0% | |
| CCGTGCATATGCGAGCAACA+TGG | + | chr3_2:69426154-69426173 | Msa0420700:CDS | 55.0% | |
| GCATATGCGAGCAACATGGG+TGG | + | chr3_2:69426158-69426177 | Msa0420700:CDS | 55.0% | |
| CACCGTTGCTGCATTGCCAA+TGG | + | chr3_2:69426500-69426519 | Msa0420700:CDS | 55.0% | |
| GTGGCACGTGCTTCATCCAT+TGG | - | chr3_2:69426519-69426538 | None:intergenic | 55.0% | |
| ! | GAAGCACGTGCCACTGCATT+CGG | + | chr3_2:69426525-69426544 | Msa0420700:CDS | 55.0% |
| ATCCCAAGTTCGGTTGCACC+AGG | - | chr3_2:69426868-69426887 | None:intergenic | 55.0% | |
| !!! | CTGCTTCCGCGTTGGTTTTC+TGG | + | chr3_2:69428208-69428227 | Msa0420700:three_prime_UTR | 55.0% |
| CGTGCACCAGAAAACCAACG+CGG | - | chr3_2:69428217-69428236 | None:intergenic | 55.0% | |
| ACTGACGCGTGTCCGACACA+GGG | + | chr3_2:69425623-69425642 | Msa0420700:intron | 60.0% | |
| AGGGAACTGCAGATGCGGTG+AGG | + | chr3_2:69426355-69426374 | Msa0420700:intron | 60.0% | |
| CTGCTCCGCGACAAGTTTCC+TGG | + | chr3_2:69426814-69426833 | Msa0420700:CDS | 60.0% | |
| CTCCCGAAGTCGTTTGCACC+AGG | - | chr3_2:69426835-69426854 | None:intergenic | 60.0% | |
| ! | GGGTGTTGCACAGCAGCAAG+AGG | - | chr3_2:69428153-69428172 | None:intergenic | 60.0% |
| GAACAGCTCTGCTTCCGCGT+TGG | + | chr3_2:69428200-69428219 | Msa0420700:three_prime_UTR | 60.0% | |
| CACTGACGCGTGTCCGACAC+AGG | + | chr3_2:69425622-69425641 | Msa0420700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 69424713 | 69428539 | 69424713 | ID=Msa0420700;Name=Msa0420700 |
| chr3_2 | mRNA | 69424713 | 69428539 | 69424713 | ID=Msa0420700-mRNA-1;Parent=Msa0420700;Name=Msa0420700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=107|0.87|0.88|1|1|1|9|412|510 |
| chr3_2 | exon | 69424713 | 69425062 | 69424713 | ID=Msa0420700-mRNA-1:exon:16477;Parent=Msa0420700-mRNA-1 |
| chr3_2 | exon | 69425954 | 69426250 | 69425954 | ID=Msa0420700-mRNA-1:exon:16478;Parent=Msa0420700-mRNA-1 |
| chr3_2 | exon | 69426357 | 69426626 | 69426357 | ID=Msa0420700-mRNA-1:exon:16479;Parent=Msa0420700-mRNA-1 |
| chr3_2 | exon | 69426712 | 69426891 | 69426712 | ID=Msa0420700-mRNA-1:exon:16480;Parent=Msa0420700-mRNA-1 |
| chr3_2 | exon | 69427003 | 69427106 | 69427003 | ID=Msa0420700-mRNA-1:exon:16481;Parent=Msa0420700-mRNA-1 |
| chr3_2 | exon | 69427211 | 69427313 | 69427211 | ID=Msa0420700-mRNA-1:exon:16482;Parent=Msa0420700-mRNA-1 |
| chr3_2 | exon | 69427474 | 69427572 | 69427474 | ID=Msa0420700-mRNA-1:exon:16483;Parent=Msa0420700-mRNA-1 |
| chr3_2 | exon | 69427678 | 69427797 | 69427678 | ID=Msa0420700-mRNA-1:exon:16484;Parent=Msa0420700-mRNA-1 |
| chr3_2 | exon | 69428011 | 69428539 | 69428011 | ID=Msa0420700-mRNA-1:exon:16485;Parent=Msa0420700-mRNA-1 |
| chr3_2 | five_prime_UTR | 69424713 | 69424819 | 69424713 | ID=Msa0420700-mRNA-1:five_prime_utr;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69424820 | 69425062 | 69424820 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69425954 | 69426250 | 69425954 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69426357 | 69426626 | 69426357 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69426712 | 69426891 | 69426712 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69427003 | 69427106 | 69427003 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69427211 | 69427313 | 69427211 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69427474 | 69427572 | 69427474 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69427678 | 69427797 | 69427678 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | CDS | 69428011 | 69428127 | 69428011 | ID=Msa0420700-mRNA-1:cds;Parent=Msa0420700-mRNA-1 |
| chr3_2 | three_prime_UTR | 69428128 | 69428539 | 69428128 | ID=Msa0420700-mRNA-1:three_prime_utr;Parent=Msa0420700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
