AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423250 MtrunA17_Chr3g0123991 98.596 570 8 0 1 570 1 570 0.0 1182
Msa0423250 MtrunA17_Chr5g0430381 77.878 556 123 0 1 556 1 556 0.0 938
Msa0423250 MtrunA17_Chr3g0105311 74.517 569 142 2 1 566 1 569 0.0 913
Msa0423250 MtrunA17_Chr5g0429171 77.083 48 11 0 509 556 30 77 7.74e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423250 AT5G10240.1 85.199 554 82 0 1 554 1 554 0.0 1021
Msa0423250 AT5G65010.1 85.455 550 80 0 1 550 1 550 0.0 1018
Msa0423250 AT5G65010.2 85.299 551 80 1 1 550 1 551 0.0 1015
Msa0423250 AT5G10240.2 84.657 554 84 1 1 554 1 553 0.0 1010
Msa0423250 AT3G47340.1 75.221 565 139 1 1 565 1 564 0.0 934
Msa0423250 AT3G47340.2 76.378 508 120 0 1 508 1 508 0.0 856
Msa0423250 AT3G47340.3 77.218 417 95 0 1 417 1 417 0.0 714
Msa0423250 AT3G47340.4 77.483 302 68 0 116 417 1 302 0.0 520

Find 154 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTACCCCTCTTTATT+TGG 0.114873 3_2:-72992166 Msa0423250:CDS
CAGCAGGCTAATAATATTTA+TGG 0.142182 3_2:-72988136 Msa0423250:three_prime_UTR
CCAAGCCGAAGTTGATTTAT+TGG 0.156555 3_2:+72989482 None:intergenic
CCAAGTACAACCATGCTTTA+AGG 0.164598 3_2:-72988172 Msa0423250:three_prime_UTR
ATACAAACCTTTGGCAAATA+TGG 0.166150 3_2:+72988993 None:intergenic
GTTCTATGGCATTAGGTTAA+TGG 0.192017 3_2:-72992468 Msa0423250:intron
TTCTCTATCCTTTCAATATC+AGG 0.209485 3_2:+72989053 None:intergenic
GAAGGTTCAGATGAAATATT+TGG 0.221785 3_2:-72989731 Msa0423250:CDS
CAAATCATTGGGAGTGAAAA+TGG 0.232355 3_2:-72989765 Msa0423250:CDS
TTGGACTGATGGGCAAATTT+AGG 0.235413 3_2:+72988068 None:intergenic
TACCCCTCTTTATTTGGGTT+GGG 0.252968 3_2:-72992160 Msa0423250:CDS
GGCATTACCCCTCTTTATTT+GGG 0.262355 3_2:-72992165 Msa0423250:CDS
TTCTATGGCATTAGGTTAAT+GGG 0.266561 3_2:-72992467 Msa0423250:intron
CTTCCTTGTTAGGCGCCTTA+TGG 0.267987 3_2:+72989693 None:intergenic
GCTATTGTGGACCCTACTTC+TGG 0.276442 3_2:-72992633 Msa0423250:CDS
TGATGAAGCTCTTCCTTGTT+AGG 0.297491 3_2:+72989683 None:intergenic
TGCAGTGGCCAATAGATATT+TGG 0.298358 3_2:-72990239 Msa0423250:CDS
TTCGATGATGCGAGCGCGTT+TGG 0.303802 3_2:+72992740 None:intergenic
ATTGCTGCTCGTGATGCTAT+TGG 0.320060 3_2:-72992186 Msa0423250:CDS
TGTGATTAGTATGAAGAATA+TGG 0.322666 3_2:-72992279 Msa0423250:intron
CAATAAATCAACTTCGGCTT+GGG 0.326748 3_2:-72989481 Msa0423250:CDS
TATCGATCCGGAGTGGAAAA+TGG 0.332343 3_2:-72989403 Msa0423250:intron
CGAACTTCATTTCACAGTTC+AGG 0.340310 3_2:-72989988 Msa0423250:intron
CCTTAAAGCATGGTTGTACT+TGG 0.352664 3_2:+72988172 None:intergenic
AAATGTATATATCTGACTTC+GGG 0.353875 3_2:-72988262 Msa0423250:three_prime_UTR
TTACCCCTCTTTATTTGGGT+TGG 0.360345 3_2:-72992161 Msa0423250:CDS
GCATATATATTCCAGCAAAC+AGG 0.371801 3_2:-72991216 Msa0423250:CDS
CAATCCAGCATGGTCTTTAG+AGG 0.380651 3_2:+72988290 None:intergenic
AGAGGCACGTGTACCGTTCT+TGG 0.383283 3_2:-72989454 Msa0423250:CDS
ACCCCTCTTTATTTGGGTTG+GGG 0.385041 3_2:-72992159 Msa0423250:CDS
TAAAACTACTGAAGAGAGTT+GGG 0.386734 3_2:-72988216 Msa0423250:three_prime_UTR
TGTTCTGTTGTCCGGAGGAC+TGG 0.389790 3_2:-72990278 Msa0423250:CDS
CCCTTTGGTGTTCTGTTGTC+CGG 0.394985 3_2:-72990286 Msa0423250:CDS
TTACATCATATGTTTCAATA+TGG 0.407697 3_2:+72989834 None:intergenic
CCCTATCGATCTGAGTTAAA+CGG 0.412160 3_2:-72992916 None:intergenic
CCTTCAGGTCGTGCCGCGCT+TGG 0.420882 3_2:-72988376 Msa0423250:CDS
GCTGCCAGGTCAACAGTTCC+AGG 0.421132 3_2:-72988469 Msa0423250:CDS
TACTTTCTGCATTGGTATAG+AGG 0.424643 3_2:-72990176 Msa0423250:intron
CAGTTGGATTGATGGTTTGA+AGG 0.424749 3_2:-72988848 Msa0423250:CDS
GTCGGATACAGTTGGATTGA+TGG 0.430598 3_2:-72988856 Msa0423250:CDS
GTTGGATCATAGCGTGTTGA+TGG 0.432444 3_2:+72990999 None:intergenic
AGTATCAGCCAAATATCTAT+TGG 0.434666 3_2:+72990231 None:intergenic
TCTTTAGAGGGATCCATTGT+CGG 0.443265 3_2:+72988303 None:intergenic
TATTGAAAGGATAGAGAAAT+GGG 0.451135 3_2:-72989048 Msa0423250:CDS
CATGCCACACTAGGGCCTCC+TGG 0.457389 3_2:+72988451 None:intergenic
ATATTGAAAGGATAGAGAAA+TGG 0.459884 3_2:-72989049 Msa0423250:CDS
TATTTGGGTTGGGGCCATGA+TGG 0.462409 3_2:-72992150 Msa0423250:intron
TACTGCAAAAGCTGTGGAAT+GGG 0.464980 3_2:-72988425 Msa0423250:CDS
AGGTTACCTGTATTTCCATA+AGG 0.465018 3_2:-72989708 Msa0423250:CDS
TACTGTCAAAAGTACACAGT+TGG 0.468294 3_2:+72992850 None:intergenic
AAATCTCATCAATTTCGAAC+TGG 0.470336 3_2:-72992408 Msa0423250:CDS
GCAGTACTGCATGCCACACT+AGG 0.471392 3_2:+72988442 None:intergenic
TAGGCGCCTTATGGAAATAC+AGG 0.475864 3_2:+72989702 None:intergenic
AGAAGAGTTTGTTGATATGC+TGG 0.476984 3_2:-72992256 Msa0423250:CDS
AAAGAGGTAGCAAATTATCT+TGG 0.479356 3_2:-72990023 Msa0423250:CDS
AAAATGTATATATCTGACTT+CGG 0.479389 3_2:-72988263 Msa0423250:three_prime_UTR
AAGTTGATTTATTGGCTCTC+AGG 0.481018 3_2:+72989490 None:intergenic
CTCGTCACTTGTTGCTGCAG+TGG 0.482865 3_2:-72990254 Msa0423250:CDS
CAATGCAAACCACTCCAATC+AGG 0.489191 3_2:+72992690 None:intergenic
ATAAAACTACTGAAGAGAGT+TGG 0.489833 3_2:-72988217 Msa0423250:three_prime_UTR
TACTGACACTGCCCGTCAGT+GGG 0.497561 3_2:-72990212 Msa0423250:CDS
CTTTAGAGGGATCCATTGTC+GGG 0.500502 3_2:+72988304 None:intergenic
AGAGGTTGATCTCCAGAAGT+AGG 0.500746 3_2:+72992621 None:intergenic
GATACGTACGGTGACAATAA+CGG 0.505224 3_2:+72992581 None:intergenic
CATTTCAACAGGGTGCTGCC+AGG 0.506834 3_2:-72988483 Msa0423250:intron
CCAATAAATCAACTTCGGCT+TGG 0.506921 3_2:-72989482 Msa0423250:CDS
GTGCGGAATCTTAGCAGTGT+TGG 0.507911 3_2:-72992784 Msa0423250:CDS
TGCGGAATCTTAGCAGTGTT+GGG 0.508911 3_2:-72992783 Msa0423250:CDS
CAGTTACATACTTTCTGCAT+TGG 0.510357 3_2:-72990184 Msa0423250:CDS
AACTTCGGCTTGGGGTATAG+AGG 0.510802 3_2:-72989472 Msa0423250:CDS
TCATCAACGTCTTGCTATTG+TGG 0.511777 3_2:-72992646 Msa0423250:CDS
ACTGTCAAAAGTACACAGTT+GGG 0.513941 3_2:+72992851 None:intergenic
CACTGCCATGGATATCGATC+CGG 0.514410 3_2:-72989415 Msa0423250:CDS
TGCGACATAGAGGACCTGAT+TGG 0.528704 3_2:-72992704 Msa0423250:CDS
GTCTTGTCATAGTTGTAAAG+AGG 0.529718 3_2:+72992603 None:intergenic
GGAGTGAAAATGGTTCTGTC+TGG 0.532933 3_2:-72989755 Msa0423250:CDS
TTTCTGGACATAAGAAACAT+TGG 0.539930 3_2:+72989791 None:intergenic
GCCTCCTGGAACTGTTGACC+TGG 0.540604 3_2:+72988465 None:intergenic
GGTTCAGATGAAATATTTGG+AGG 0.542536 3_2:-72989728 Msa0423250:CDS
AGCTGCATGAACACCAAGCG+CGG 0.545486 3_2:+72988363 None:intergenic
ATAAATTCTTTATCCAAGAA+CGG 0.547808 3_2:+72989441 None:intergenic
TGGCCCCAACCCAAATAAAG+AGG 0.550694 3_2:+72992156 None:intergenic
AAGTGACGAGTCCAGTCCTC+CGG 0.552950 3_2:+72990267 None:intergenic
GATCCCTCTAAAGACCATGC+TGG 0.556208 3_2:-72988294 Msa0423250:exon
AAACACTCCTACCACAAAAG+AGG 0.557038 3_2:-72988682 Msa0423250:CDS
AAAATAAAAGAGCCCGACAA+TGG 0.557915 3_2:-72988316 Msa0423250:CDS
GAGGTTGATCTCCAGAAGTA+GGG 0.558161 3_2:+72992622 None:intergenic
TGTTCATGCAGCTGCATACA+AGG 0.562587 3_2:-72988353 Msa0423250:CDS
AACACTCCTACCACAAAAGA+GGG 0.564176 3_2:-72988681 Msa0423250:CDS
CCAAGCGCGGCACGACCTGA+AGG 0.564595 3_2:+72988376 None:intergenic
TTTGCGTGAGGCCTTTGAGA+GGG 0.566242 3_2:-72990973 Msa0423250:intron
ATGATGACTGATGTACCCTT+TGG 0.566933 3_2:-72990301 Msa0423250:CDS
GGCCCCAACCCAAATAAAGA+GGG 0.568153 3_2:+72992157 None:intergenic
ACAAAGCGCATTGGACTGAT+GGG 0.569774 3_2:+72988058 None:intergenic
AGTTTGTTGATATGCTGGAT+GGG 0.570850 3_2:-72992251 Msa0423250:CDS
AATCTTAGCAGTGTTGGGTG+TGG 0.573813 3_2:-72992778 Msa0423250:CDS
AGAATTTATCAACACTGCCA+TGG 0.574909 3_2:-72989427 Msa0423250:CDS
TTGCTGGAATATATATGCCC+TGG 0.575185 3_2:+72991221 None:intergenic
AAGGCCTCACGCAAAACCGT+TGG 0.575646 3_2:+72990981 None:intergenic
TAACTGTGATCCCCACTGAC+GGG 0.578963 3_2:+72990201 None:intergenic
GCGGCAGCCACATACCATCA+TGG 0.580966 3_2:+72992136 None:intergenic
AGTTCTAAAACCTTAAAGCA+TGG 0.581950 3_2:+72988162 None:intergenic
CCGGACAACAGAACACCAAA+GGG 0.583577 3_2:+72990286 None:intergenic
AGATAAAGCCTGATATTGAA+AGG 0.584487 3_2:-72989061 Msa0423250:CDS
CATATATATTCCAGCAAACA+GGG 0.584924 3_2:-72991215 Msa0423250:intron
GGATTTGAGAGCCGCAAAAG+AGG 0.588975 3_2:-72990039 Msa0423250:CDS
ATACTGACACTGCCCGTCAG+TGG 0.589598 3_2:-72990213 Msa0423250:CDS
GCGATGGTGTCGGATACAGT+TGG 0.589745 3_2:-72988864 Msa0423250:CDS
TTTCCATAAGGCGCCTAACA+AGG 0.590033 3_2:-72989696 Msa0423250:CDS
CAAAAGAGGGATACCACTAC+AGG 0.590975 3_2:-72988668 Msa0423250:CDS
GAGAGCCAATAAATCAACTT+CGG 0.592271 3_2:-72989487 Msa0423250:CDS
AATAAATCAACTTCGGCTTG+GGG 0.592392 3_2:-72989480 Msa0423250:CDS
GAGTTTGTTGATATGCTGGA+TGG 0.592504 3_2:-72992252 Msa0423250:CDS
GTAACTGTGATCCCCACTGA+CGG 0.594247 3_2:+72990200 None:intergenic
TTGCAGGAGGATTAAGAAGG+TGG 0.595137 3_2:-72991052 Msa0423250:intron
GGAAGGTATAGATGCACTTG+AGG 0.595941 3_2:-72989867 Msa0423250:CDS
ATCAACACGCTATGATCCAA+CGG 0.596803 3_2:-72990997 Msa0423250:CDS
GCATCATCGAATTGTCTCGC+AGG 0.596887 3_2:-72992728 Msa0423250:CDS
TCTCGCAGGTTGCGACATAG+AGG 0.597101 3_2:-72992714 Msa0423250:CDS
CCACTCCGGATCGATATCCA+TGG 0.600070 3_2:+72989410 None:intergenic
TGAGAATCCATATTTGCCAA+AGG 0.602556 3_2:-72989000 Msa0423250:intron
AATCCAGCATGGTCTTTAGA+GGG 0.604010 3_2:+72988291 None:intergenic
AAAATGGTTCTGTCTGGAGA+AGG 0.606208 3_2:-72989749 Msa0423250:CDS
GGAATAGCTAACCCTCTCAA+AGG 0.609261 3_2:+72990962 None:intergenic
TCCGGACAACAGAACACCAA+AGG 0.611807 3_2:+72990285 None:intergenic
GTACTGCAAAAGCTGTGGAA+TGG 0.613846 3_2:-72988426 Msa0423250:CDS
GAACAGTTCAGCGATGGTGT+CGG 0.616755 3_2:-72988874 Msa0423250:CDS
GCACATATTGTACAGGCAGA+AGG 0.619788 3_2:-72988896 Msa0423250:CDS
TCTTTGCAGGAGGATTAAGA+AGG 0.620740 3_2:-72991055 Msa0423250:intron
CAGTACTGCATGCCACACTA+GGG 0.621411 3_2:+72988443 None:intergenic
CAGAAGGAACAGTTCAGCGA+TGG 0.621633 3_2:-72988880 Msa0423250:CDS
CAAGCGCGGCACGACCTGAA+GGG 0.622971 3_2:+72988377 None:intergenic
TTATCAGATATACTAAAAGG+TGG 0.626788 3_2:-72988106 Msa0423250:three_prime_UTR
TTTGGTGTTCTGTTGTCCGG+AGG 0.633191 3_2:-72990283 Msa0423250:CDS
GAGTTAAACGGAGCTAAACA+AGG 0.634851 3_2:-72992904 Msa0423250:five_prime_UTR
TCTATGGCATTAGGTTAATG+GGG 0.644846 3_2:-72992466 Msa0423250:intron
TTGTTGGCAGCCGTCATGTG+CGG 0.647753 3_2:-72992801 Msa0423250:exon
CATAGAGGACCTGATTGGAG+TGG 0.648591 3_2:-72992699 Msa0423250:CDS
AAAACTACTGAAGAGAGTTG+GGG 0.650442 3_2:-72988215 Msa0423250:three_prime_UTR
AGTTCCAGGAGGCCCTAGTG+TGG 0.651099 3_2:-72988455 Msa0423250:CDS
CTGGAATATATATGCCCTGG+AGG 0.658198 3_2:+72991224 None:intergenic
CTGTGGAATGGGATGCAGCA+TGG 0.665004 3_2:-72988414 Msa0423250:CDS
TAGCAAGACGTTGATGAGCG+AGG 0.666348 3_2:+72992652 None:intergenic
TGCTAAGATTCCGCACATGA+CGG 0.669260 3_2:+72992791 None:intergenic
CCATGGATATCGATCCGGAG+TGG 0.674824 3_2:-72989410 Msa0423250:CDS
GCCCCAACCCAAATAAAGAG+GGG 0.687236 3_2:+72992158 None:intergenic
GAACTGTGAAATGAAGTTCG+TGG 0.696854 3_2:+72989991 None:intergenic
GCCAGGTCAACAGTTCCAGG+AGG 0.705953 3_2:-72988466 Msa0423250:CDS
ATGCAGTACTGCAAAAGCTG+TGG 0.707096 3_2:-72988431 Msa0423250:CDS
ATTTGCTCTGAGAACCATGG+TGG 0.708717 3_2:+72991023 None:intergenic
GGAATTTGCTCTGAGAACCA+TGG 0.723639 3_2:+72991020 None:intergenic
ACTGACACTGCCCGTCAGTG+GGG 0.727167 3_2:-72990211 Msa0423250:CDS
GAAGGTGGTACAATCCACCA+TGG 0.728627 3_2:-72991037 Msa0423250:CDS
CTGTGAAATGAAGTTCGTGG+TGG 0.746248 3_2:+72989994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTTATTCAAAAAAAAAA+GGG + chr3_2:72989282-72989301 None:intergenic 10.0%
!! TCAATTTATTCAAAAAAAAA+AGG + chr3_2:72989283-72989302 None:intergenic 10.0%
!! AATAATTACATAAAAATATG+GGG + chr3_2:72991365-72991384 None:intergenic 10.0%
!! TGAATTAGATATATCATTTA+TGG - chr3_2:72989647-72989666 Msa0423250:intron 15.0%
!!! AATTATGGTATATTACTTTT+CGG + chr3_2:72991331-72991350 None:intergenic 15.0%
!!! AATTTATTTTACAAGAAAAC+TGG + chr3_2:72991777-72991796 None:intergenic 15.0%
!!! TTCATGTTCAAATTTAAAAT+TGG + chr3_2:72992423-72992442 None:intergenic 15.0%
!! TAAAAAACATCAATCAGATT+TGG - chr3_2:72988150-72988169 Msa0423250:three_prime_UTR 20.0%
!! AAAAATGTTACAATAAGAAG+CGG + chr3_2:72988865-72988884 None:intergenic 20.0%
!! ACAGTTTAAAAAAATTACAC+AGG + chr3_2:72989032-72989051 None:intergenic 20.0%
!! TTCAAAGTCATACATTTAAT+TGG - chr3_2:72989104-72989123 Msa0423250:intron 20.0%
!!! TGAAGCTACAAATTTTATAT+AGG + chr3_2:72989196-72989215 None:intergenic 20.0%
!! ACATATCTGTATAAACATTA+AGG - chr3_2:72989414-72989433 Msa0423250:CDS 20.0%
!! TTAGATATATCATTTATGGA+AGG - chr3_2:72989651-72989670 Msa0423250:intron 20.0%
!! TAGATATATCATTTATGGAA+GGG - chr3_2:72989652-72989671 Msa0423250:intron 20.0%
!! TTATAGACAAAATAAAAGTG+AGG + chr3_2:72990357-72990376 None:intergenic 20.0%
!! TTTACGTATAATTTCTCAAA+AGG + chr3_2:72990462-72990481 None:intergenic 20.0%
!! TAACCAAGAAAAAGTTAAAA+AGG + chr3_2:72990625-72990644 None:intergenic 20.0%
!! CATATAACTACTATTACTTA+TGG + chr3_2:72990879-72990898 None:intergenic 20.0%
!! TTACATCATATGTTTCAATA+TGG + chr3_2:72991148-72991167 None:intergenic 20.0%
!! ATAAATTCTTTATCCAAGAA+CGG + chr3_2:72991541-72991560 None:intergenic 20.0%
!! TTGTAAAATAAATTTGTCTG+TGG - chr3_2:72991783-72991802 Msa0423250:intron 20.0%
!! TATCAAGTATATAATGTCAA+TGG + chr3_2:72992224-72992243 None:intergenic 20.0%
!! GACATTATATACTTGATAAA+TGG - chr3_2:72992226-72992245 Msa0423250:CDS 20.0%
!!! TTCAAATTTAAAATTGGTCA+AGG + chr3_2:72992417-72992436 None:intergenic 20.0%
!! AAAATGTATATATCTGACTT+CGG - chr3_2:72992716-72992735 Msa0423250:CDS 20.0%
!!! CTTTTATCAGATATACTAAA+AGG - chr3_2:72992870-72992889 Msa0423250:five_prime_UTR 20.0%
! TGTGATTAGTATGAAGAATA+TGG - chr3_2:72988700-72988719 Msa0423250:CDS 25.0%
!! GCTTTAAATTGCACAATAAA+TGG + chr3_2:72988934-72988953 None:intergenic 25.0%
! TACATTTCCTTGAAAAAACT+AGG + chr3_2:72989486-72989505 None:intergenic 25.0%
!! AGGCATTAATCTTTTACATT+CGG - chr3_2:72989546-72989565 Msa0423250:intron 25.0%
! TAAAGAGTTGTCTATACATT+TGG - chr3_2:72989595-72989614 Msa0423250:intron 25.0%
! TACATTTGGTTATGTATTCA+TGG - chr3_2:72989609-72989628 Msa0423250:intron 25.0%
!!! ATTATTTTGCAGGATCAATA+TGG - chr3_2:72989678-72989697 Msa0423250:CDS 25.0%
!! AATTTATATCTTTTCCTCCA+GGG - chr3_2:72989741-72989760 Msa0423250:CDS 25.0%
! TTTACAAGAGTAACCATAAT+CGG + chr3_2:72989817-72989836 None:intergenic 25.0%
! AGTAAAATTTAGACAGTAGA+AGG + chr3_2:72989861-72989880 None:intergenic 25.0%
! CAAACGATGAAATAATTCAA+TGG + chr3_2:72990051-72990070 None:intergenic 25.0%
! ATATCATTTGCAACAAACTT+AGG - chr3_2:72990376-72990395 Msa0423250:intron 25.0%
!!! CATCCTTTTTAACTTTTTCT+TGG - chr3_2:72990619-72990638 Msa0423250:intron 25.0%
! AAGGTAAAATGGTAGATAAA+GGG + chr3_2:72991028-72991047 None:intergenic 25.0%
!! TTCTATTTTCGCTATATATC+AGG - chr3_2:72991091-72991110 Msa0423250:intron 25.0%
! TCCAGAAAAATCAAATCATT+GGG - chr3_2:72991203-72991222 Msa0423250:intron 25.0%
! ACACCAAAAACTTGAATAAA+CGG + chr3_2:72991426-72991445 None:intergenic 25.0%
! TTGTAACTTTACTTCTTTCT+TGG - chr3_2:72991601-72991620 Msa0423250:intron 25.0%
! AATTTGTCGTTAATTTCATG+AGG + chr3_2:72991894-72991913 None:intergenic 25.0%
! ATATTGAAAGGATAGAGAAA+TGG - chr3_2:72991930-72991949 Msa0423250:intron 25.0%
! TATTGAAAGGATAGAGAAAT+GGG - chr3_2:72991931-72991950 Msa0423250:intron 25.0%
!!! TTTTGAGAAGTTATTTCCAA+AGG - chr3_2:72992339-72992358 Msa0423250:intron 25.0%
! AAATGTATATATCTGACTTC+GGG - chr3_2:72992717-72992736 Msa0423250:CDS 25.0%
! TTATCAGATATACTAAAAGG+TGG - chr3_2:72992873-72992892 Msa0423250:five_prime_UTR 25.0%
!!! ATCAGATTTGGTTTTGTTGT+TGG - chr3_2:72988162-72988181 Msa0423250:three_prime_UTR 30.0%
GATAGAAGATAAGATACGTA+CGG + chr3_2:72988413-72988432 None:intergenic 30.0%
! TTGTCACATTTTCTGTTCTA+TGG - chr3_2:72988497-72988516 Msa0423250:intron 30.0%
! ATTTTCTGTTCTATGGCATT+AGG - chr3_2:72988504-72988523 Msa0423250:intron 30.0%
TTCTATGGCATTAGGTTAAT+GGG - chr3_2:72988512-72988531 Msa0423250:intron 30.0%
!!! GTTTCTGTCTCAATTTTTTG+TGG + chr3_2:72988549-72988568 None:intergenic 30.0%
AAATCTCATCAATTTCGAAC+TGG - chr3_2:72988571-72988590 Msa0423250:intron 30.0%
! TCTTGTAAGTGTTTTCTAGA+AGG - chr3_2:72988618-72988637 Msa0423250:intron 30.0%
AATAAATGGTTCAATTCGAG+CGG + chr3_2:72988920-72988939 None:intergenic 30.0%
AATCATCTGACAATCACAAT+TGG + chr3_2:72989058-72989077 None:intergenic 30.0%
TGTTTATACAGATATGTAGC+AGG + chr3_2:72989411-72989430 None:intergenic 30.0%
!!! AACATGTCCTAGTTTTTTCA+AGG - chr3_2:72989476-72989495 Msa0423250:CDS 30.0%
! CAATTTATATCTTTTCCTCC+AGG - chr3_2:72989740-72989759 Msa0423250:CDS 30.0%
CATATATATTCCAGCAAACA+GGG - chr3_2:72989764-72989783 Msa0423250:CDS 30.0%
!!! ATTATTTTTACCCTGTTTGC+TGG + chr3_2:72989777-72989796 None:intergenic 30.0%
!!! CTCGTTATTTTTTCCGATTA+TGG - chr3_2:72989801-72989820 Msa0423250:CDS 30.0%
AGTAGAAGGAGAAAAACAAA+TGG + chr3_2:72989847-72989866 None:intergenic 30.0%
TGTAAGTGTGTATCTTATCT+TGG + chr3_2:72989884-72989903 None:intergenic 30.0%
AATAATTCAATGGATGAGAC+AGG + chr3_2:72990041-72990060 None:intergenic 30.0%
CACAAAATGTTGTCAAATAG+CGG - chr3_2:72990185-72990204 Msa0423250:CDS 30.0%
AATTCCAATCATGAGCTTAT+GGG + chr3_2:72990487-72990506 None:intergenic 30.0%
AAATTCCAATCATGAGCTTA+TGG + chr3_2:72990488-72990507 None:intergenic 30.0%
ATAAGCTCATGATTGGAATT+TGG - chr3_2:72990487-72990506 Msa0423250:intron 30.0%
CTTAGTATCAACTACATCAA+AGG + chr3_2:72990584-72990603 None:intergenic 30.0%
AGTATCAGCCAAATATCTAT+TGG + chr3_2:72990751-72990770 None:intergenic 30.0%
!!! ATAATTTGCTACCTCTTTTG+CGG + chr3_2:72990954-72990973 None:intergenic 30.0%
AAAGAGGTAGCAAATTATCT+TGG - chr3_2:72990956-72990975 Msa0423250:intron 30.0%
CAAGGTAAAATGGTAGATAA+AGG + chr3_2:72991029-72991048 None:intergenic 30.0%
! ATTTTCGCTATATATCAGGA+AGG - chr3_2:72991095-72991114 Msa0423250:intron 30.0%
TTTCTGGACATAAGAAACAT+TGG + chr3_2:72991191-72991210 None:intergenic 30.0%
GTCCAGAAAAATCAAATCAT+TGG - chr3_2:72991202-72991221 Msa0423250:intron 30.0%
!! TCCCAATGATTTGATTTTTC+TGG + chr3_2:72991207-72991226 None:intergenic 30.0%
GAAGGTTCAGATGAAATATT+TGG - chr3_2:72991248-72991267 Msa0423250:CDS 30.0%
!! TACCCGTTTATTCAAGTTTT+TGG - chr3_2:72991420-72991439 Msa0423250:intron 30.0%
CACCAAAAACTTGAATAAAC+GGG + chr3_2:72991425-72991444 None:intergenic 30.0%
AGATAAAGCCTGATATTGAA+AGG - chr3_2:72991918-72991937 Msa0423250:intron 30.0%
TTCTCTATCCTTTCAATATC+AGG + chr3_2:72991929-72991948 None:intergenic 30.0%
ATACAAACCTTTGGCAAATA+TGG + chr3_2:72991989-72992008 None:intergenic 30.0%
AGTTGATTGATACAAACCTT+TGG + chr3_2:72991998-72992017 None:intergenic 30.0%
!! TTTTTCAGCACATATTGTAC+AGG - chr3_2:72992076-72992095 Msa0423250:intron 30.0%
TATATACTTGATAAATGGCC+AGG - chr3_2:72992231-72992250 Msa0423250:CDS 30.0%
AAGACTATACAATTCACCTT+TGG + chr3_2:72992358-72992377 None:intergenic 30.0%
ATGAACCATTTCATTTCAAC+AGG - chr3_2:72992485-72992504 Msa0423250:intron 30.0%
TGAACCATTTCATTTCAACA+GGG - chr3_2:72992486-72992505 Msa0423250:intron 30.0%
!!! CATTTTAAAACAATCCAGCA+TGG + chr3_2:72992702-72992721 None:intergenic 30.0%
ATAAAACTACTGAAGAGAGT+TGG - chr3_2:72992762-72992781 Msa0423250:CDS 30.0%
TAAAACTACTGAAGAGAGTT+GGG - chr3_2:72992763-72992782 Msa0423250:CDS 30.0%
!! AGTTCTAAAACCTTAAAGCA+TGG + chr3_2:72992820-72992839 None:intergenic 30.0%
CAGCAGGCTAATAATATTTA+TGG - chr3_2:72992843-72992862 Msa0423250:five_prime_UTR 30.0%
! ACTGTCAAAAGTACACAGTT+GGG + chr3_2:72988131-72988150 None:intergenic 35.0%
! TACTGTCAAAAGTACACAGT+TGG + chr3_2:72988132-72988151 None:intergenic 35.0%
GTCTTGTCATAGTTGTAAAG+AGG + chr3_2:72988379-72988398 None:intergenic 35.0%
GTTCTATGGCATTAGGTTAA+TGG - chr3_2:72988511-72988530 Msa0423250:intron 35.0%
TCTATGGCATTAGGTTAATG+GGG - chr3_2:72988513-72988532 Msa0423250:intron 35.0%
!! AGAAGAGTTTGTTGATATGC+TGG - chr3_2:72988723-72988742 Msa0423250:CDS 35.0%
!! AGTTTGTTGATATGCTGGAT+GGG - chr3_2:72988728-72988747 Msa0423250:CDS 35.0%
TCCATGTGCTATGCAATTAA+GGG + chr3_2:72989315-72989334 None:intergenic 35.0%
ATCCATGTGCTATGCAATTA+AGG + chr3_2:72989316-72989335 None:intergenic 35.0%
! TTCCTCTACATTAGAAGCAT+CGG + chr3_2:72989458-72989477 None:intergenic 35.0%
GCATATATATTCCAGCAAAC+AGG - chr3_2:72989763-72989782 Msa0423250:CDS 35.0%
CAAAGACAGCAAAGTTTAAC+AGG + chr3_2:72989910-72989929 None:intergenic 35.0%
! TTAAACTTTGCTGTCTTTGC+AGG - chr3_2:72989911-72989930 Msa0423250:intron 35.0%
!! GAGGATGCTTTAAAATTCCA+GGG + chr3_2:72990338-72990357 None:intergenic 35.0%
!! TGAGGATGCTTTAAAATTCC+AGG + chr3_2:72990339-72990358 None:intergenic 35.0%
GAGTGTTATGTCATAACTAG+AGG - chr3_2:72990398-72990417 Msa0423250:intron 35.0%
! AGGCATTAAGTTGCATTTCA+TGG + chr3_2:72990442-72990461 None:intergenic 35.0%
AATTCCCATAAGCTCATGAT+TGG - chr3_2:72990480-72990499 Msa0423250:intron 35.0%
GCTGATTACTATGTTCTAGT+TGG - chr3_2:72990511-72990530 Msa0423250:intron 35.0%
GTTATACTGTGATATCATGC+AGG - chr3_2:72990641-72990660 Msa0423250:intron 35.0%
CAGTTACATACTTTCTGCAT+TGG - chr3_2:72990795-72990814 Msa0423250:intron 35.0%
! TACTTTCTGCATTGGTATAG+AGG - chr3_2:72990803-72990822 Msa0423250:intron 35.0%
!! ACAGCTCATTTTAACCATGA+GGG + chr3_2:72990840-72990859 None:intergenic 35.0%
!! TACAGCTCATTTTAACCATG+AGG + chr3_2:72990841-72990860 None:intergenic 35.0%
! ACTTAATTTTCCCCCATTCA+GGG - chr3_2:72990911-72990930 Msa0423250:intron 35.0%
ATAAAAATCTCGTCTGCTCA+AGG + chr3_2:72991047-72991066 None:intergenic 35.0%
! GATTTTTATTGCTAGCTCGA+AGG - chr3_2:72991058-72991077 Msa0423250:intron 35.0%
CAAATCATTGGGAGTGAAAA+TGG - chr3_2:72991214-72991233 Msa0423250:intron 35.0%
GGTTCAGATGAAATATTTGG+AGG - chr3_2:72991251-72991270 Msa0423250:CDS 35.0%
AGGTTACCTGTATTTCCATA+AGG - chr3_2:72991271-72991290 Msa0423250:CDS 35.0%
! ATAAACGGGTAAAAGTACAC+AGG + chr3_2:72991411-72991430 None:intergenic 35.0%
!! AAGTTGATTTATTGGCTCTC+AGG + chr3_2:72991492-72991511 None:intergenic 35.0%
GAGAGCCAATAAATCAACTT+CGG - chr3_2:72991492-72991511 Msa0423250:intron 35.0%
CAATAAATCAACTTCGGCTT+GGG - chr3_2:72991498-72991517 Msa0423250:intron 35.0%
! AATAAATCAACTTCGGCTTG+GGG - chr3_2:72991499-72991518 Msa0423250:intron 35.0%
AGAATTTATCAACACTGCCA+TGG - chr3_2:72991552-72991571 Msa0423250:intron 35.0%
! TACAATACCATTTTCCACTC+CGG + chr3_2:72991586-72991605 None:intergenic 35.0%
CTATAGGCTGTCTTATGATT+GGG - chr3_2:72991657-72991676 Msa0423250:intron 35.0%
CAATGTTCAATCAACAATGC+AGG + chr3_2:72991686-72991705 None:intergenic 35.0%
TGAGAATCCATATTTGCCAA+AGG - chr3_2:72991979-72991998 Msa0423250:intron 35.0%
GTTATTCAGTTCAATGTCAC+AGG + chr3_2:72992185-72992204 None:intergenic 35.0%
!! GTTTTCAGGGTAAACAAAGT+TGG + chr3_2:72992281-72992300 None:intergenic 35.0%
TCTCAAAAATTGTCCTGTAG+TGG + chr3_2:72992327-72992346 None:intergenic 35.0%
TGGTCAAGGTTATGATGAAA+AGG + chr3_2:72992403-72992422 None:intergenic 35.0%
AAAATAAAAGAGCCCGACAA+TGG - chr3_2:72992663-72992682 Msa0423250:CDS 35.0%
AAAACTACTGAAGAGAGTTG+GGG - chr3_2:72992764-72992783 Msa0423250:CDS 35.0%
GAGTTAAACGGAGCTAAACA+AGG - chr3_2:72988075-72988094 Msa0423250:three_prime_UTR 40.0%
!! TCATCAACGTCTTGCTATTG+TGG - chr3_2:72988333-72988352 Msa0423250:CDS 40.0%
GATACGTACGGTGACAATAA+CGG + chr3_2:72988401-72988420 None:intergenic 40.0%
!! GAGTTTGTTGATATGCTGGA+TGG - chr3_2:72988727-72988746 Msa0423250:CDS 40.0%
TGGCATTACCCCTCTTTATT+TGG - chr3_2:72988813-72988832 Msa0423250:intron 40.0%
! GGCATTACCCCTCTTTATTT+GGG - chr3_2:72988814-72988833 Msa0423250:intron 40.0%
! TTACCCCTCTTTATTTGGGT+TGG - chr3_2:72988818-72988837 Msa0423250:intron 40.0%
! TACCCCTCTTTATTTGGGTT+GGG - chr3_2:72988819-72988838 Msa0423250:intron 40.0%
!! CCAAAATGCATCTCTGGAAT+TGG + chr3_2:72988956-72988975 None:intergenic 40.0%
! CCAATTCCAGAGATGCATTT+TGG - chr3_2:72988953-72988972 Msa0423250:intron 40.0%
ACATGTCCAAAATGCATCTC+TGG + chr3_2:72988962-72988981 None:intergenic 40.0%
ACCCTTAATTGCATAGCACA+TGG - chr3_2:72989311-72989330 Msa0423250:intron 40.0%
TAATGCCTGTGTATGCTAGA+GGG + chr3_2:72989534-72989553 None:intergenic 40.0%
TTAATGCCTGTGTATGCTAG+AGG + chr3_2:72989535-72989554 None:intergenic 40.0%
! TTCGGCAGTTGCATGATTTT+AGG - chr3_2:72989564-72989583 Msa0423250:intron 40.0%
TTGCTGGAATATATATGCCC+TGG + chr3_2:72989761-72989780 None:intergenic 40.0%
TCTTTGCAGGAGGATTAAGA+AGG - chr3_2:72989924-72989943 Msa0423250:intron 40.0%
ATCAACACGCTATGATCCAA+CGG - chr3_2:72989982-72990001 Msa0423250:intron 40.0%
TTAGAATGTCCAGTTCTGCT+TGG - chr3_2:72990075-72990094 Msa0423250:intron 40.0%
ATAACAACACCAAGCAGAAC+TGG + chr3_2:72990087-72990106 None:intergenic 40.0%
!! TGCTTGGTGTTGTTATGTAG+TGG - chr3_2:72990091-72990110 Msa0423250:intron 40.0%
GTGCTGTCAATTATGGAATG+CGG + chr3_2:72990265-72990284 None:intergenic 40.0%
CATTCCATAATTGACAGCAC+TGG - chr3_2:72990265-72990284 Msa0423250:CDS 40.0%
AGAACCAGTGCTGTCAATTA+TGG + chr3_2:72990272-72990291 None:intergenic 40.0%
! AGACTATTTTCAACTCTCCC+TGG - chr3_2:72990318-72990337 Msa0423250:CDS 40.0%
ATGATGACTGATGTACCCTT+TGG - chr3_2:72990678-72990697 Msa0423250:intron 40.0%
TGCAGTGGCCAATAGATATT+TGG - chr3_2:72990740-72990759 Msa0423250:intron 40.0%
! GACTTAATTTTCCCCCATTC+AGG - chr3_2:72990910-72990929 Msa0423250:intron 40.0%
GAACTGTGAAATGAAGTTCG+TGG + chr3_2:72990991-72991010 None:intergenic 40.0%
CGAACTTCATTTCACAGTTC+AGG - chr3_2:72990991-72991010 Msa0423250:CDS 40.0%
! AAAATGGTTCTGTCTGGAGA+AGG - chr3_2:72991230-72991249 Msa0423250:CDS 40.0%
TGATGAAGCTCTTCCTTGTT+AGG + chr3_2:72991299-72991318 None:intergenic 40.0%
GGGGATAAGCACAAGAATTA+TGG + chr3_2:72991346-72991365 None:intergenic 40.0%
! CCAAGCCGAAGTTGATTTAT+TGG + chr3_2:72991500-72991519 None:intergenic 40.0%
CCAATAAATCAACTTCGGCT+TGG - chr3_2:72991497-72991516 Msa0423250:intron 40.0%
GCTATAGGCTGTCTTATGAT+TGG - chr3_2:72991656-72991675 Msa0423250:intron 40.0%
TGCTTGTTCGTATGTCTTGA+AGG - chr3_2:72992027-72992046 Msa0423250:intron 40.0%
! CAGTTGGATTGATGGTTTGA+AGG - chr3_2:72992131-72992150 Msa0423250:intron 40.0%
GATCATGCTAACGAACAAGT+AGG - chr3_2:72992153-72992172 Msa0423250:CDS 40.0%
!!! TTGTGGTAGGAGTGTTTTCA+GGG + chr3_2:72992294-72992313 None:intergenic 40.0%
!!! TTTGTGGTAGGAGTGTTTTC+AGG + chr3_2:72992295-72992314 None:intergenic 40.0%
AAACACTCCTACCACAAAAG+AGG - chr3_2:72992297-72992316 Msa0423250:intron 40.0%
AACACTCCTACCACAAAAGA+GGG - chr3_2:72992298-72992317 Msa0423250:intron 40.0%
TCATGCATAGTCAAGTGGTT+TGG + chr3_2:72992469-72992488 None:intergenic 40.0%
ATGGTTCATGCATAGTCAAG+TGG + chr3_2:72992474-72992493 None:intergenic 40.0%
AGCACCCTGTTGAAATGAAA+TGG + chr3_2:72992493-72992512 None:intergenic 40.0%
TACTGCAAAAGCTGTGGAAT+GGG - chr3_2:72992554-72992573 Msa0423250:intron 40.0%
! TCTTTAGAGGGATCCATTGT+CGG + chr3_2:72992679-72992698 None:intergenic 40.0%
AATCCAGCATGGTCTTTAGA+GGG + chr3_2:72992691-72992710 None:intergenic 40.0%
CCTTAAAGCATGGTTGTACT+TGG + chr3_2:72992810-72992829 None:intergenic 40.0%
CCAAGTACAACCATGCTTTA+AGG - chr3_2:72992807-72992826 Msa0423250:exon 40.0%
TGCTAAGATTCCGCACATGA+CGG + chr3_2:72988191-72988210 None:intergenic 45.0%
TGCGGAATCTTAGCAGTGTT+GGG - chr3_2:72988196-72988215 Msa0423250:three_prime_UTR 45.0%
! AATCTTAGCAGTGTTGGGTG+TGG - chr3_2:72988201-72988220 Msa0423250:three_prime_UTR 45.0%
CAATGCAAACCACTCCAATC+AGG + chr3_2:72988292-72988311 None:intergenic 45.0%
! GAGGTTGATCTCCAGAAGTA+GGG + chr3_2:72988360-72988379 None:intergenic 45.0%
! AGAGGTTGATCTCCAGAAGT+AGG + chr3_2:72988361-72988380 None:intergenic 45.0%
ATTGCTGCTCGTGATGCTAT+TGG - chr3_2:72988793-72988812 Msa0423250:intron 45.0%
!! ACCCCTCTTTATTTGGGTTG+GGG - chr3_2:72988820-72988839 Msa0423250:intron 45.0%
!! CGTTTTAACCTCAACCTCGT+TGG - chr3_2:72988886-72988905 Msa0423250:CDS 45.0%
TGCCGATGCTTCTAATGTAG+AGG - chr3_2:72989453-72989472 Msa0423250:CDS 45.0%
AATGCCTGTGTATGCTAGAG+GGG + chr3_2:72989533-72989552 None:intergenic 45.0%
!! GGAAGGGCTGATTATTTTGC+AGG - chr3_2:72989668-72989687 Msa0423250:CDS 45.0%
CTGGAATATATATGCCCTGG+AGG + chr3_2:72989758-72989777 None:intergenic 45.0%
! AACTTTGCTGTCTTTGCAGG+AGG - chr3_2:72989914-72989933 Msa0423250:intron 45.0%
TTGCAGGAGGATTAAGAAGG+TGG - chr3_2:72989927-72989946 Msa0423250:intron 45.0%
!! ATTTGCTCTGAGAACCATGG+TGG + chr3_2:72989959-72989978 None:intergenic 45.0%
!! GGAATTTGCTCTGAGAACCA+TGG + chr3_2:72989962-72989981 None:intergenic 45.0%
GTTGGATCATAGCGTGTTGA+TGG + chr3_2:72989983-72990002 None:intergenic 45.0%
GGAATAGCTAACCCTCTCAA+AGG + chr3_2:72990020-72990039 None:intergenic 45.0%
! GCTATGCCACTGTTTTGTAG+CGG - chr3_2:72990217-72990236 Msa0423250:CDS 45.0%
CGAATTCCGCTACAAAACAG+TGG + chr3_2:72990226-72990245 None:intergenic 45.0%
! TCTGCATTGGTATAGAGGTC+TGG - chr3_2:72990808-72990827 Msa0423250:intron 45.0%
! TCTTTTGCGGCTCTCAAATC+CGG + chr3_2:72990941-72990960 None:intergenic 45.0%
CTGTGAAATGAAGTTCGTGG+TGG + chr3_2:72990988-72991007 None:intergenic 45.0%
CTCGTCTGCTCAAGGTAAAA+TGG + chr3_2:72991039-72991058 None:intergenic 45.0%
! GGAAGGTATAGATGCACTTG+AGG - chr3_2:72991112-72991131 Msa0423250:intron 45.0%
! GGAGTGAAAATGGTTCTGTC+TGG - chr3_2:72991224-72991243 Msa0423250:CDS 45.0%
TAGGCGCCTTATGGAAATAC+AGG + chr3_2:72991280-72991299 None:intergenic 45.0%
! TTTCCATAAGGCGCCTAACA+AGG - chr3_2:72991283-72991302 Msa0423250:CDS 45.0%
TATCGATCCGGAGTGGAAAA+TGG - chr3_2:72991576-72991595 Msa0423250:intron 45.0%
ATCTCGTCATGCAGCATAAG+AGG - chr3_2:72991629-72991648 Msa0423250:intron 45.0%
AGCATAAGAGGCTGAGCTAT+AGG - chr3_2:72991641-72991660 Msa0423250:intron 45.0%
GCACATATTGTACAGGCAGA+AGG - chr3_2:72992083-72992102 Msa0423250:intron 45.0%
GTCGGATACAGTTGGATTGA+TGG - chr3_2:72992123-72992142 Msa0423250:intron 45.0%
! TGGTATCCCTCTTTTGTGGT+AGG + chr3_2:72992307-72992326 None:intergenic 45.0%
! GTAGTGGTATCCCTCTTTTG+TGG + chr3_2:72992311-72992330 None:intergenic 45.0%
CAAAAGAGGGATACCACTAC+AGG - chr3_2:72992311-72992330 Msa0423250:intron 45.0%
ATGCAGTACTGCAAAAGCTG+TGG - chr3_2:72992548-72992567 Msa0423250:intron 45.0%
GTACTGCAAAAGCTGTGGAA+TGG - chr3_2:72992553-72992572 Msa0423250:intron 45.0%
TGCAGCATGGTCCAAAAATC+TGG - chr3_2:72992578-72992597 Msa0423250:intron 45.0%
TCCAAAAATCTGGACCCTTC+AGG - chr3_2:72992588-72992607 Msa0423250:intron 45.0%
! ACCTGAAGGGTCCAGATTTT+TGG + chr3_2:72992592-72992611 None:intergenic 45.0%
TGTTCATGCAGCTGCATACA+AGG - chr3_2:72992626-72992645 Msa0423250:CDS 45.0%
! CTTTAGAGGGATCCATTGTC+GGG + chr3_2:72992678-72992697 None:intergenic 45.0%
CAATCCAGCATGGTCTTTAG+AGG + chr3_2:72992692-72992711 None:intergenic 45.0%
!!! AGGTTTTAGAACTTCGCAGC+AGG - chr3_2:72992827-72992846 Msa0423250:five_prime_UTR 45.0%
!! TAATAATTACATAAAAATAT+GGG + chr3_2:72991366-72991385 None:intergenic 5.0%
!! ATAATAATTACATAAAAATA+TGG + chr3_2:72991367-72991386 None:intergenic 5.0%
GTGCGGAATCTTAGCAGTGT+TGG - chr3_2:72988195-72988214 Msa0423250:three_prime_UTR 50.0%
GCATCATCGAATTGTCTCGC+AGG - chr3_2:72988251-72988270 Msa0423250:three_prime_UTR 50.0%
TGCGACATAGAGGACCTGAT+TGG - chr3_2:72988275-72988294 Msa0423250:three_prime_UTR 50.0%
CATAGAGGACCTGATTGGAG+TGG - chr3_2:72988280-72988299 Msa0423250:three_prime_UTR 50.0%
! TAGCAAGACGTTGATGAGCG+AGG + chr3_2:72988330-72988349 None:intergenic 50.0%
GCTATTGTGGACCCTACTTC+TGG - chr3_2:72988346-72988365 Msa0423250:CDS 50.0%
GCCCCAACCCAAATAAAGAG+GGG + chr3_2:72988824-72988843 None:intergenic 50.0%
GGCCCCAACCCAAATAAAGA+GGG + chr3_2:72988825-72988844 None:intergenic 50.0%
TGGCCCCAACCCAAATAAAG+AGG + chr3_2:72988826-72988845 None:intergenic 50.0%
!! TATTTGGGTTGGGGCCATGA+TGG - chr3_2:72988829-72988848 Msa0423250:intron 50.0%
CTTAGACACCAACGAGGTTG+AGG + chr3_2:72988897-72988916 None:intergenic 50.0%
ATGCCTGTGTATGCTAGAGG+GGG + chr3_2:72989532-72989551 None:intergenic 50.0%
GAAGGTGGTACAATCCACCA+TGG - chr3_2:72989942-72989961 Msa0423250:intron 50.0%
! TGATCCAACGGTTTTGCGTG+AGG - chr3_2:72989994-72990013 Msa0423250:CDS 50.0%
! TTTTGCGTGAGGCCTTTGAG+AGG - chr3_2:72990005-72990024 Msa0423250:CDS 50.0%
! TTTGCGTGAGGCCTTTGAGA+GGG - chr3_2:72990006-72990025 Msa0423250:CDS 50.0%
CTGTGATATCATGCAGGCTG+TGG - chr3_2:72990647-72990666 Msa0423250:intron 50.0%
CCGGACAACAGAACACCAAA+GGG + chr3_2:72990696-72990715 None:intergenic 50.0%
!! CCCTTTGGTGTTCTGTTGTC+CGG - chr3_2:72990693-72990712 Msa0423250:intron 50.0%
TCCGGACAACAGAACACCAA+AGG + chr3_2:72990697-72990716 None:intergenic 50.0%
!! TTTGGTGTTCTGTTGTCCGG+AGG - chr3_2:72990696-72990715 Msa0423250:intron 50.0%
TAACTGTGATCCCCACTGAC+GGG + chr3_2:72990781-72990800 None:intergenic 50.0%
GTAACTGTGATCCCCACTGA+CGG + chr3_2:72990782-72990801 None:intergenic 50.0%
AGGTCTGGACTATTCCCTCA+TGG - chr3_2:72990823-72990842 Msa0423250:intron 50.0%
AAATCCGGAGAGCCCTGAAT+GGG + chr3_2:72990926-72990945 None:intergenic 50.0%
GGATTTGAGAGCCGCAAAAG+AGG - chr3_2:72990940-72990959 Msa0423250:intron 50.0%
CTTCCTTGTTAGGCGCCTTA+TGG + chr3_2:72991289-72991308 None:intergenic 50.0%
!! AACTTCGGCTTGGGGTATAG+AGG - chr3_2:72991507-72991526 Msa0423250:intron 50.0%
CACTGCCATGGATATCGATC+CGG - chr3_2:72991564-72991583 Msa0423250:intron 50.0%
CAGAAGGAACAGTTCAGCGA+TGG - chr3_2:72992099-72992118 Msa0423250:intron 50.0%
GAACAGTTCAGCGATGGTGT+CGG - chr3_2:72992105-72992124 Msa0423250:intron 50.0%
CAGTACTGCATGCCACACTA+GGG + chr3_2:72992539-72992558 None:intergenic 50.0%
! GATCCCTCTAAAGACCATGC+TGG - chr3_2:72992685-72992704 Msa0423250:CDS 50.0%
TTGTTGGCAGCCGTCATGTG+CGG - chr3_2:72988178-72988197 Msa0423250:three_prime_UTR 55.0%
TTCGATGATGCGAGCGCGTT+TGG + chr3_2:72988242-72988261 None:intergenic 55.0%
TCTCGCAGGTTGCGACATAG+AGG - chr3_2:72988265-72988284 Msa0423250:three_prime_UTR 55.0%
GTTGGGGCCATGATGGTATG+TGG - chr3_2:72988836-72988855 Msa0423250:CDS 55.0%
TGCCTGTGTATGCTAGAGGG+GGG + chr3_2:72989531-72989550 None:intergenic 55.0%
AAGGCCTCACGCAAAACCGT+TGG + chr3_2:72990001-72990020 None:intergenic 55.0%
TGTTCTGTTGTCCGGAGGAC+TGG - chr3_2:72990701-72990720 Msa0423250:intron 55.0%
AAGTGACGAGTCCAGTCCTC+CGG + chr3_2:72990715-72990734 None:intergenic 55.0%
! CTCGTCACTTGTTGCTGCAG+TGG - chr3_2:72990725-72990744 Msa0423250:intron 55.0%
ATACTGACACTGCCCGTCAG+TGG - chr3_2:72990766-72990785 Msa0423250:intron 55.0%
TACTGACACTGCCCGTCAGT+GGG - chr3_2:72990767-72990786 Msa0423250:intron 55.0%
AATCCGGAGAGCCCTGAATG+GGG + chr3_2:72990925-72990944 None:intergenic 55.0%
CAAATCCGGAGAGCCCTGAA+TGG + chr3_2:72990927-72990946 None:intergenic 55.0%
! AGAGGCACGTGTACCGTTCT+TGG - chr3_2:72991525-72991544 Msa0423250:intron 55.0%
CCACTCCGGATCGATATCCA+TGG + chr3_2:72991572-72991591 None:intergenic 55.0%
CCATGGATATCGATCCGGAG+TGG - chr3_2:72991569-72991588 Msa0423250:intron 55.0%
! GCGATGGTGTCGGATACAGT+TGG - chr3_2:72992115-72992134 Msa0423250:intron 55.0%
TCAGCATTGCGTCTGTGACC+TGG + chr3_2:72992252-72992271 None:intergenic 55.0%
!! CATTTCAACAGGGTGCTGCC+AGG - chr3_2:72992496-72992515 Msa0423250:intron 55.0%
GCAGTACTGCATGCCACACT+AGG + chr3_2:72992540-72992559 None:intergenic 55.0%
CTGTGGAATGGGATGCAGCA+TGG - chr3_2:72992565-72992584 Msa0423250:intron 55.0%
AGCTGCATGAACACCAAGCG+CGG + chr3_2:72992619-72992638 None:intergenic 55.0%
GCGGCAGCCACATACCATCA+TGG + chr3_2:72988846-72988865 None:intergenic 60.0%
GAGCGGCTTAGACACCAACG+AGG + chr3_2:72988903-72988922 None:intergenic 60.0%
TCCCCCCCTCTAGCATACAC+AGG - chr3_2:72989526-72989545 Msa0423250:intron 60.0%
GCCTGTGTATGCTAGAGGGG+GGG + chr3_2:72989530-72989549 None:intergenic 60.0%
ACTGACACTGCCCGTCAGTG+GGG - chr3_2:72990768-72990787 Msa0423250:intron 60.0%
TTCCCCCATTCAGGGCTCTC+CGG - chr3_2:72990919-72990938 Msa0423250:intron 60.0%
ATCCGGAGAGCCCTGAATGG+GGG + chr3_2:72990924-72990943 None:intergenic 60.0%
GCTGCCAGGTCAACAGTTCC+AGG - chr3_2:72992510-72992529 Msa0423250:intron 60.0%
GCCAGGTCAACAGTTCCAGG+AGG - chr3_2:72992513-72992532 Msa0423250:intron 60.0%
GCCTCCTGGAACTGTTGACC+TGG + chr3_2:72992517-72992536 None:intergenic 60.0%
AGTTCCAGGAGGCCCTAGTG+TGG - chr3_2:72992524-72992543 Msa0423250:intron 60.0%
CATGCCACACTAGGGCCTCC+TGG + chr3_2:72992531-72992550 None:intergenic 65.0%
CAAGCGCGGCACGACCTGAA+GGG + chr3_2:72992605-72992624 None:intergenic 65.0%
CCAAGCGCGGCACGACCTGA+AGG + chr3_2:72992606-72992625 None:intergenic 70.0%
CCTTCAGGTCGTGCCGCGCT+TGG - chr3_2:72992603-72992622 Msa0423250:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 72988073 72992928 72988073 ID=Msa0423250;Name=Msa0423250
chr3_2 mRNA 72988073 72992928 72988073 ID=Msa0423250-mRNA-1;Parent=Msa0423250;Name=Msa0423250-mRNA-1;_AED=0.12;_eAED=0.12;_QI=120|1|1|1|1|1|13|233|570
chr3_2 exon 72988073 72988494 72988073 ID=Msa0423250-mRNA-1:exon:18168;Parent=Msa0423250-mRNA-1
chr3_2 exon 72988641 72988748 72988641 ID=Msa0423250-mRNA-1:exon:18167;Parent=Msa0423250-mRNA-1
chr3_2 exon 72988831 72988917 72988831 ID=Msa0423250-mRNA-1:exon:18166;Parent=Msa0423250-mRNA-1
chr3_2 exon 72989001 72989081 72989001 ID=Msa0423250-mRNA-1:exon:18165;Parent=Msa0423250-mRNA-1
chr3_2 exon 72989404 72989538 72989404 ID=Msa0423250-mRNA-1:exon:18164;Parent=Msa0423250-mRNA-1
chr3_2 exon 72989667 72989888 72989667 ID=Msa0423250-mRNA-1:exon:18163;Parent=Msa0423250-mRNA-1
chr3_2 exon 72989989 72990069 72989989 ID=Msa0423250-mRNA-1:exon:18162;Parent=Msa0423250-mRNA-1
chr3_2 exon 72990177 72990338 72990177 ID=Msa0423250-mRNA-1:exon:18161;Parent=Msa0423250-mRNA-1
chr3_2 exon 72990974 72991068 72990974 ID=Msa0423250-mRNA-1:exon:18160;Parent=Msa0423250-mRNA-1
chr3_2 exon 72991216 72991311 72991216 ID=Msa0423250-mRNA-1:exon:18159;Parent=Msa0423250-mRNA-1
chr3_2 exon 72992151 72992292 72992151 ID=Msa0423250-mRNA-1:exon:18158;Parent=Msa0423250-mRNA-1
chr3_2 exon 72992380 72992475 72992380 ID=Msa0423250-mRNA-1:exon:18157;Parent=Msa0423250-mRNA-1
chr3_2 exon 72992590 72992928 72992590 ID=Msa0423250-mRNA-1:exon:18156;Parent=Msa0423250-mRNA-1
chr3_2 five_prime_UTR 72992809 72992928 72992809 ID=Msa0423250-mRNA-1:five_prime_utr;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72992590 72992808 72992590 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72992380 72992475 72992380 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72992151 72992292 72992151 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72991216 72991311 72991216 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72990974 72991068 72990974 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72990177 72990338 72990177 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72989989 72990069 72989989 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72989667 72989888 72989667 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72989404 72989538 72989404 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72989001 72989081 72989001 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72988831 72988917 72988831 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72988641 72988748 72988641 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 CDS 72988306 72988494 72988306 ID=Msa0423250-mRNA-1:cds;Parent=Msa0423250-mRNA-1
chr3_2 three_prime_UTR 72988073 72988305 72988073 ID=Msa0423250-mRNA-1:three_prime_utr;Parent=Msa0423250-mRNA-1
Gene Sequence

>Msa0423250

ATGTGCGGAATCTTAGCAGTGTTGGGTGTGGTCGACAATTCTCAGTCCAAACGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGACATAGAGGACCTGATTGGAGTGGTTTGCATTGTCATCAAGATTGTTACCTCGCTCATCAACGTCTTGCTATTGTGGACCCTACTTCTGGAGATCAACCTCTTTACAACTATGACAAGACCGTTATTGTCACCGTTAATGGGGAGATATACAACCACAAAAAATTGAGACAGAAACTGAAATCTCATCAATTTCGAACTGGTAGTGATTGTGAAGTCATTGCTCATCTTTATGAAGAATATGGAGAAGAGTTTGTTGATATGCTGGATGGGATGTTCTCATTTGTGCTTCTTGATACTAGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGTTGGGGCCATGATGGATCAATATGGTTTGCGTCTGAAATGAAAGCGCTGATTGATGATTGTGAGCAATTTATATCTTTTCCTCCAGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTCTCAGAGCAAATTCCATCAACACGCTATGATCCAACGGTTTTGCGTGAGGCCTTTGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGTGTTCTGTTGTCCGGAGGACTGGACTCGTCACTTGTTGCTGCAGTGGCCAATAGATATTTGGCTGATACTGACACTGCCCGTCAGTGGGGATCACAGTTACATACTTTCTGCATTGGTATAGAGGGCTCTCCGGATTTGAGAGCCGCAAAAGAGGTAGCAAATTATCTTGGCACTTGCCACCACGAACTTCATTTCACAGTTCAGGAAGGTATAGATGCACTTGAGGAAGTCATTTACCATATTGAAACATATGATGTAACGACTGTCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAATCATTGGGAGTGAAAATGGTTCTGTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTCCATAAGGCGCCTAACAAGGAAGAGCTTCATCAAGAAACATGCCGAAAAATTAAAGCACTTCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCGGCTTGGGGTATAGAGGCACGTGTACCGTTCTTGGATAAAGAATTTATCAACACTGCCATGGATATCGATCCGGAGTGGAAAATGATAAAGCCTGATATTGAAAGGATAGAGAAATGGGTATTGCGCAATGCATTTGATGATGATGAGAATCCATATTTGCCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGCGATGGTGTCGGATACAGTTGGATTGATGGTTTGAAGGATCATGCTAACGAACAAGTCACAGACGCAATGCTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCTACCACAAAAGAGGGATACCACTACAGGACAATTTTTGAGAAGTTATTTCCAAAGGGTGCTGCCAGGTCAACAGTTCCAGGAGGCCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTGGACCCTTCAGGTCGTGCCGCGCTTGGTGTTCATGCAGCTGCATACAAGGATGCAGTAGATATCAAAATAAAAGAGCCCGACAATGGATCCCTCTAA

Protein sequence

>Msa0423250

MCGILAVLGVVDNSQSKRARIIELSRRLRHRGPDWSGLHCHQDCYLAHQRLAIVDPTSGDQPLYNYDKTVIVTVNGEIYNHKKLRQKLKSHQFRTGSDCEVIAHLYEEYGEEFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALIDDCEQFISFPPGHIYSSKQGGLRRWYNPPWFSEQIPSTRYDPTVLREAFERAVVKRMMTDVPFGVLLSGGLDSSLVAAVANRYLADTDTARQWGSQLHTFCIGIEGSPDLRAAKEVANYLGTCHHELHFTVQEGIDALEEVIYHIETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHQETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFINTAMDIDPEWKMIKPDIERIEKWVLRNAFDDDENPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANEQVTDAMLKHANFVYPENTPTTKEGYHYRTIFEKLFPKGAARSTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHAAAYKDAVDIKIKEPDNGSL*