AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1408770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408770 MtrunA17_Chr8g0337231 90.794 315 28 1 1 314 1 315 0.0 574
Msa1408770 MtrunA17_Chr8g0337241 83.333 282 44 2 35 316 2 280 2.44e-165 461
Msa1408770 MtrunA17_Chr6g0457691 42.347 196 104 4 119 313 538 725 3.84e-42 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408770 AT5G17660.1 65.306 245 77 3 75 316 69 308 3.47e-120 348
Msa1408770 AT5G24840.1 28.512 242 128 11 99 313 23 246 5.95e-12 65.1

Find 85 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTGTAATTTA+AGG 0.065136 tig0023416:+27720 Msa1408770:three_prime_UTR
ACCTAAAGTGAGAAATTATT+TGG 0.126545 tig0023416:+26393 Msa1408770:CDS
CTTGCAGTTAGTTTCAATTT+TGG 0.187587 tig0023416:+26776 Msa1408770:CDS
CCCAAATAATTTCTCACTTT+AGG 0.263184 tig0023416:-26394 None:intergenic
TCAATCACATCTGTTTCTTT+TGG 0.300643 tig0023416:-27509 None:intergenic
GGTCTTGTTCAGCTGTTACT+TGG 0.321900 tig0023416:-24358 None:intergenic
TAAGCAACCCTATGGGGATT+AGG 0.326313 tig0023416:+27430 Msa1408770:CDS
ATTATTTGGGATTGGAAATA+CGG 0.335361 tig0023416:+26407 Msa1408770:CDS
CTGCCACTCATGGTGGATAT+TGG 0.351376 tig0023416:+25797 Msa1408770:CDS
TTGAAGAGAAAGAGGGGAAA+TGG 0.356944 tig0023416:+24163 Msa1408770:exon
TCACTGTCACACAATATAGA+AGG 0.376117 tig0023416:-27396 None:intergenic
ACCAACTGCTTGAAAGAAAT+AGG 0.378434 tig0023416:-26735 None:intergenic
CGTCACAAGAAGTTAGTATA+TGG 0.384046 tig0023416:+24227 Msa1408770:CDS
AGAAAAGTATGCATTCTCTT+AGG 0.387543 tig0023416:+27624 Msa1408770:three_prime_UTR
TTTGTCAAATTTCAGGATAT+GGG 0.389407 tig0023416:+24522 Msa1408770:intron
TACAGAGAAAGAAGAACTTA+AGG 0.390216 tig0023416:-24574 None:intergenic
AGTGAGAAATTATTTGGGAT+TGG 0.396847 tig0023416:+26399 Msa1408770:CDS
GTTGTGACTTATGTTGTTGT+TGG 0.400793 tig0023416:-24379 None:intergenic
CCTAAAGTGAGAAATTATTT+GGG 0.400944 tig0023416:+26394 Msa1408770:CDS
GAAGAAGAGAGAGGACGAAA+GGG 0.402215 tig0023416:-24296 None:intergenic
GTGCATCAACTTCATCAAAC+TGG 0.411217 tig0023416:-27350 None:intergenic
GTCTTGTTCAGCTGTTACTT+GGG 0.430566 tig0023416:-24357 None:intergenic
TGAAGAGAAAGAGGGGAAAT+GGG 0.430964 tig0023416:+24164 Msa1408770:exon
TGGTGAAGCGTGCTGAGTTA+TGG 0.441715 tig0023416:+26563 Msa1408770:CDS
ATTGTAGATAATTTATCTCC+TGG 0.443117 tig0023416:+27148 Msa1408770:CDS
ACCTATTTCTTTCAAGCAGT+TGG 0.457053 tig0023416:+26734 Msa1408770:CDS
GGTGAAGCGTGCTGAGTTAT+GGG 0.461581 tig0023416:+26564 Msa1408770:CDS
TCCACCATGAGTGGCAGAGC+AGG 0.463070 tig0023416:-25791 None:intergenic
AGCTGTTACTTGGGAAATAG+AGG 0.464400 tig0023416:-24348 None:intergenic
AGAAGAAGAGAGAGGACGAA+AGG 0.467431 tig0023416:-24297 None:intergenic
TTGTAGATAATTTATCTCCT+GGG 0.470027 tig0023416:+27149 Msa1408770:CDS
TTCCAGTCTGGTACTGGTGC+AGG 0.472779 tig0023416:-25752 None:intergenic
ACAGAGAAAGAAGAACTTAA+GGG 0.478265 tig0023416:-24573 None:intergenic
GGGATTGGAAATACGGCAAA+GGG 0.483148 tig0023416:+26414 Msa1408770:CDS
AGACCCTGCTCTGCCACTCA+TGG 0.484179 tig0023416:+25787 Msa1408770:CDS
ACCTGGTTCCAGTCTGGTAC+TGG 0.484249 tig0023416:-25758 None:intergenic
ATGGTTATTAAGCAACCCTA+TGG 0.492202 tig0023416:+27422 Msa1408770:CDS
CTCTCGGTCCTAATCCCCAT+AGG 0.493796 tig0023416:-27438 None:intergenic
TGAGTTATGGGTAAAAGATC+TGG 0.497316 tig0023416:+26576 Msa1408770:CDS
GAAACTAACTGCAAGGGTCC+AGG 0.506605 tig0023416:-26768 None:intergenic
GCAAACACCTGGTTCCAGTC+TGG 0.508336 tig0023416:-25764 None:intergenic
TTCTGCATGAATCTCTCTCT+CGG 0.516639 tig0023416:-27454 None:intergenic
GAAATAGAGGAAGAGGAGAG+TGG 0.516991 tig0023416:-24335 None:intergenic
TACTTGGGAAATAGAGGAAG+AGG 0.521735 tig0023416:-24342 None:intergenic
ATAAAATGTCTGCAATGGAC+AGG 0.522666 tig0023416:-27553 None:intergenic
GCAGTGGTAGGTTTCTTATG+TGG 0.523016 tig0023416:+26356 Msa1408770:CDS
CAGTTGGTAGAATCATATCC+TGG 0.532880 tig0023416:+26750 Msa1408770:CDS
TGGTTATTAAGCAACCCTAT+GGG 0.534053 tig0023416:+27423 Msa1408770:CDS
TGGGTTATTGCTGTGGAGGT+TGG 0.534304 tig0023416:+24183 Msa1408770:CDS
CTCCTGCACCAGTACCAGAC+TGG 0.539916 tig0023416:+25750 Msa1408770:CDS
CGGTGGGGTTGAAGAGAAAG+AGG 0.544282 tig0023416:+24155 None:intergenic
GGTGAAAATGAGAGTGAGAG+TGG 0.548892 tig0023416:-24275 None:intergenic
ACTCAATCTCTCTAACAACT+TGG 0.549026 tig0023416:+24439 Msa1408770:CDS
CAAAATTGAAACTAACTGCA+AGG 0.551890 tig0023416:-26775 None:intergenic
ATGGGTAAAAGATCTGGCTC+TGG 0.555239 tig0023416:+26582 Msa1408770:CDS
ACACTATAAAATGTCTGCAA+TGG 0.555855 tig0023416:-27558 None:intergenic
TGTAGATAATTTATCTCCTG+GGG 0.562130 tig0023416:+27150 Msa1408770:CDS
AAATAATGACAGGCAGTGGT+AGG 0.578508 tig0023416:+26344 Msa1408770:intron
TGGGATTGGAAATACGGCAA+AGG 0.583272 tig0023416:+26413 Msa1408770:CDS
GAGCAGGGTCTGCAAACACC+TGG 0.584261 tig0023416:-25775 None:intergenic
GGGGAAATGGGTTATTGCTG+TGG 0.588504 tig0023416:+24176 Msa1408770:exon
GAAATGGGTTATTGCTGTGG+AGG 0.594719 tig0023416:+24179 Msa1408770:exon
CATTCTCTTAGGATGCCTAC+CGG 0.595714 tig0023416:+27635 Msa1408770:three_prime_UTR
CACTGTCACACAATATAGAA+GGG 0.596542 tig0023416:-27395 None:intergenic
TCTCGGTCCTAATCCCCATA+GGG 0.597669 tig0023416:-27437 None:intergenic
ACCAGTACCAGACTGGAACC+AGG 0.600428 tig0023416:+25757 Msa1408770:CDS
ATATGTTCAACATCAACCAC+AGG 0.611589 tig0023416:+27601 Msa1408770:three_prime_UTR
CTCATGGTGGATATTGGATG+TGG 0.615858 tig0023416:+25803 Msa1408770:CDS
TTCATGCAGAATTCGAAGGA+GGG 0.618770 tig0023416:+27466 Msa1408770:CDS
GAGATTCATGCAGAATTCGA+AGG 0.619717 tig0023416:+27462 Msa1408770:CDS
AAAATTGAAACTAACTGCAA+GGG 0.620397 tig0023416:-26774 None:intergenic
CCCTGCTCTGCCACTCATGG+TGG 0.621197 tig0023416:+25790 Msa1408770:CDS
AAGGAGGGAAAATCTATCGA+AGG 0.623652 tig0023416:+27481 Msa1408770:CDS
CCACCATGAGTGGCAGAGCA+GGG 0.630245 tig0023416:-25790 None:intergenic
ATTCATGCAGAATTCGAAGG+AGG 0.630607 tig0023416:+27465 Msa1408770:CDS
GGTTATTAAGCAACCCTATG+GGG 0.641395 tig0023416:+27424 Msa1408770:CDS
ACAGTCTGATGTGGTTGAAG+TGG 0.648166 tig0023416:+27311 Msa1408770:CDS
CATCCAATATCCACCATGAG+TGG 0.650715 tig0023416:-25800 None:intergenic
GGTATTTGTACAGTCTGATG+TGG 0.665592 tig0023416:+27302 Msa1408770:intron
TCTACAATAGCACCAACCAA+AGG 0.670279 tig0023416:-27133 None:intergenic
GGTGGGGTTGAAGAGAAAGA+GGG 0.671119 tig0023416:+24156 None:intergenic
TCTATATTGTGTGACAGTGA+AGG 0.673502 tig0023416:+27399 Msa1408770:CDS
TATTGTGTGACAGTGAAGGA+TGG 0.681117 tig0023416:+27403 Msa1408770:CDS
GTAGATAATTTATCTCCTGG+GGG 0.693547 tig0023416:+27151 Msa1408770:CDS
GTGGGGTTGAAGAGAAAGAG+GGG 0.718218 tig0023416:+24157 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAAATGATATTTTTAT+AGG + tig0023416:25058-25077 Msa1408770:intron 10.0%
!!! TAATATTTTCAGTTTAAAGT+GGG - tig0023416:24488-24507 None:intergenic 15.0%
!!! ATAATATTTTCAGTTTAAAG+TGG - tig0023416:24489-24508 None:intergenic 15.0%
!! AATAAGAATAAACTACTAAA+GGG - tig0023416:24637-24656 None:intergenic 15.0%
!! TATAAAACAGTTTAATACAA+TGG + tig0023416:24687-24706 Msa1408770:intron 15.0%
!!! TATCATTTTTTTGTTTGTTT+TGG - tig0023416:25051-25070 None:intergenic 15.0%
!! AACATATAACTTATAATGAA+TGG - tig0023416:25102-25121 None:intergenic 15.0%
!! TTCATTATAAGTTATATGTT+AGG + tig0023416:25102-25121 Msa1408770:intron 15.0%
!! AAAACGTAAAATAAACATAA+GGG - tig0023416:25129-25148 None:intergenic 15.0%
!! TAAAACGTAAAATAAACATA+AGG - tig0023416:25130-25149 None:intergenic 15.0%
!!! ACTTGAACATTTTAAATATA+GGG - tig0023416:25161-25180 None:intergenic 15.0%
!!! AACTTGAACATTTTAAATAT+AGG - tig0023416:25162-25181 None:intergenic 15.0%
!!! TATATTTAAAATGTTCAAGT+TGG + tig0023416:25161-25180 Msa1408770:intron 15.0%
!!! TGGTTAAAATGTATATTTTT+TGG + tig0023416:25482-25501 Msa1408770:intron 15.0%
!! CTTGATATATAACATATTTA+TGG + tig0023416:27194-27213 Msa1408770:intron 15.0%
!! CAATATTTAGATAAAAATAC+CGG - tig0023416:27657-27676 None:intergenic 15.0%
!! ATAAGAATAAACTACTAAAG+GGG - tig0023416:24636-24655 None:intergenic 20.0%
!! GAATAAGAATAAACTACTAA+AGG - tig0023416:24638-24657 None:intergenic 20.0%
!! ACACCATTAATCAATTATAA+CGG - tig0023416:24784-24803 None:intergenic 20.0%
!! ATTAAACCTTATTCATTGTA+TGG + tig0023416:24834-24853 Msa1408770:intron 20.0%
!! ATTTAACCATACAATGAATA+AGG - tig0023416:24843-24862 None:intergenic 20.0%
!! ACAAAATTCGAGATAATTAA+AGG - tig0023416:24878-24897 None:intergenic 20.0%
!! CAAAATTACATGCTTTAATA+GGG - tig0023416:24958-24977 None:intergenic 20.0%
!! ACAAAATTACATGCTTTAAT+AGG - tig0023416:24959-24978 None:intergenic 20.0%
!! TAATTTGAAAGACTGATAAA+TGG + tig0023416:24978-24997 Msa1408770:intron 20.0%
!! AATTTGAAAGACTGATAAAT+GGG + tig0023416:24979-24998 Msa1408770:intron 20.0%
!!! AAGAAAATGTAACTTTTCTA+GGG + tig0023416:25018-25037 Msa1408770:intron 20.0%
!!! GTTTATTTTACGTTTTAAGT+CGG + tig0023416:25133-25152 Msa1408770:intron 20.0%
!!! CTTGAACATTTTAAATATAG+GGG - tig0023416:25160-25179 None:intergenic 20.0%
!!! TTAGAACCTTTTTAAACATA+GGG + tig0023416:25383-25402 Msa1408770:intron 20.0%
!!! CCTTTTATATAATATAGTGA+AGG - tig0023416:25459-25478 None:intergenic 20.0%
!! CCTTCACTATATTATATAAA+AGG + tig0023416:25456-25475 Msa1408770:intron 20.0%
!! CTATATTATATAAAAGGTTG+TGG + tig0023416:25462-25481 Msa1408770:intron 20.0%
!! GTTATCAAACTATATATATG+TGG - tig0023416:25531-25550 None:intergenic 20.0%
!!! ATCTCAATTTCATTGATAAT+TGG + tig0023416:25828-25847 Msa1408770:intron 20.0%
!!! ACTTTGATTATAAGATGTTT+TGG - tig0023416:26012-26031 None:intergenic 20.0%
!! TGCTGAATATTTAAATTTGT+GGG - tig0023416:26891-26910 None:intergenic 20.0%
!! AATTTAAATATTCAGCACAT+TGG + tig0023416:26894-26913 Msa1408770:intron 20.0%
!!! TTTTCTACTTTTTCTTATAG+TGG + tig0023416:27679-27698 Msa1408770:three_prime_UTR 20.0%
!!! CTGTTTTTTTGTCAAATTTC+AGG + tig0023416:24515-24534 Msa1408770:intron 25.0%
!! TTTTGTCAAATTTCAGGATA+TGG + tig0023416:24521-24540 Msa1408770:intron 25.0%
! TTTGTCAAATTTCAGGATAT+GGG + tig0023416:24522-24541 Msa1408770:intron 25.0%
! GAATTGGTATATGTAAAGAA+AGG - tig0023416:24604-24623 None:intergenic 25.0%
!!! ACAGTTTAATTTTGATACAC+TGG + tig0023416:24661-24680 Msa1408770:intron 25.0%
!! TCTAAAGTCAAACATTAGAT+TGG - tig0023416:24723-24742 None:intergenic 25.0%
!! CAAGAAAATGTAACTTTTCT+AGG + tig0023416:25017-25036 Msa1408770:intron 25.0%
!!! AATGATATTTTTATAGGAGC+TGG + tig0023416:25064-25083 Msa1408770:intron 25.0%
! AGAGTTAACTCAAAATTTGA+CGG - tig0023416:25225-25244 None:intergenic 25.0%
!! GTTAGAACCTTTTTAAACAT+AGG + tig0023416:25382-25401 Msa1408770:intron 25.0%
!! TAGAACCTTTTTAAACATAG+GGG + tig0023416:25384-25403 Msa1408770:intron 25.0%
! TGATTAGATACTAGTGTAAA+AGG - tig0023416:25566-25585 None:intergenic 25.0%
!!! CATTTTTTCACACCAATTTT+AGG + tig0023416:25594-25613 Msa1408770:intron 25.0%
! CAATATACCATTCCTAAAAT+TGG - tig0023416:25609-25628 None:intergenic 25.0%
! TTAGGAATGGTATATTGATA+AGG + tig0023416:25612-25631 Msa1408770:intron 25.0%
! ATAAACAAACCAGACATAAT+AGG + tig0023416:25643-25662 Msa1408770:intron 25.0%
! TTGGTTCAATAAAACAGAAA+GGG - tig0023416:25993-26012 None:intergenic 25.0%
!! TTTGGTTCAATAAAACAGAA+AGG - tig0023416:25994-26013 None:intergenic 25.0%
!! TGTTGTTTGAAAATAATGAC+AGG + tig0023416:26334-26353 Msa1408770:intron 25.0%
! ACCTAAAGTGAGAAATTATT+TGG + tig0023416:26393-26412 Msa1408770:CDS 25.0%
! CCTAAAGTGAGAAATTATTT+GGG + tig0023416:26394-26413 Msa1408770:CDS 25.0%
!! ATTATTTGGGATTGGAAATA+CGG + tig0023416:26407-26426 Msa1408770:CDS 25.0%
! GAAATCAAAATTTACTGGAA+GGG - tig0023416:26463-26482 None:intergenic 25.0%
! AGAAATCAAAATTTACTGGA+AGG - tig0023416:26464-26483 None:intergenic 25.0%
! GATGAGAAATCAAAATTTAC+TGG - tig0023416:26468-26487 None:intergenic 25.0%
!! TGGCATCTAAATAAAGTTTT+CGG - tig0023416:26626-26645 None:intergenic 25.0%
! TATGTGTGTGTAATTTACTT+TGG - tig0023416:26646-26665 None:intergenic 25.0%
! AAAATTGAAACTAACTGCAA+GGG - tig0023416:26777-26796 None:intergenic 25.0%
!! AAAGCACTAAAAAGAGAAAT+TGG + tig0023416:26811-26830 Msa1408770:intron 25.0%
! AAGCACTAAAAAGAGAAATT+GGG + tig0023416:26812-26831 Msa1408770:intron 25.0%
! GTGCTGAATATTTAAATTTG+TGG - tig0023416:26892-26911 None:intergenic 25.0%
! AACTATAAATAAAACACCCT+TGG - tig0023416:27035-27054 None:intergenic 25.0%
!!! GATGTTTTTTCTTGAAATGA+GGG - tig0023416:27090-27109 None:intergenic 25.0%
!!! TGATGTTTTTTCTTGAAATG+AGG - tig0023416:27091-27110 None:intergenic 25.0%
! ATTGTAGATAATTTATCTCC+TGG + tig0023416:27148-27167 Msa1408770:CDS 25.0%
! TTGTAGATAATTTATCTCCT+GGG + tig0023416:27149-27168 Msa1408770:CDS 25.0%
! ATTTAGATAAAAATACCGGT+AGG - tig0023416:27653-27672 None:intergenic 25.0%
! TTTCAGTTTAAAGTGGGAAT+TGG - tig0023416:24482-24501 None:intergenic 30.0%
ACAGAGAAAGAAGAACTTAA+GGG - tig0023416:24576-24595 None:intergenic 30.0%
TACAGAGAAAGAAGAACTTA+AGG - tig0023416:24577-24596 None:intergenic 30.0%
AAAGGGGAAAACAATTGAAT+TGG - tig0023416:24620-24639 None:intergenic 30.0%
CCATTAATCAATTATAACGG+TGG - tig0023416:24781-24800 None:intergenic 30.0%
CCACCGTTATAATTGATTAA+TGG + tig0023416:24778-24797 Msa1408770:intron 30.0%
GTAAAAAATCTTTACACCGA+CGG + tig0023416:24802-24821 Msa1408770:intron 30.0%
! TGAAGAAATTTTGCTGACAT+TGG - tig0023416:25199-25218 None:intergenic 30.0%
! AGAACCTTTTTAAACATAGG+GGG + tig0023416:25385-25404 Msa1408770:intron 30.0%
TGAAACCTAAAATAGAGGTA+AGG + tig0023416:25414-25433 Msa1408770:intron 30.0%
GAAACCTAAAATAGAGGTAA+GGG + tig0023416:25415-25434 Msa1408770:intron 30.0%
TGAAGGCTAAATTGTATGTT+TGG - tig0023416:25442-25461 None:intergenic 30.0%
!! TTTCACACCAATTTTAGGAA+TGG + tig0023416:25599-25618 Msa1408770:intron 30.0%
!! TTATGTCTGGTTTGTTTATC+CGG - tig0023416:25642-25661 None:intergenic 30.0%
AAAGAAATGCCTATTATGTC+TGG - tig0023416:25655-25674 None:intergenic 30.0%
TAATCATTAGACGAAAGCAA+GGG - tig0023416:25716-25735 None:intergenic 30.0%
ATAATCATTAGACGAAAGCA+AGG - tig0023416:25717-25736 None:intergenic 30.0%
ATGCATTTGTTCTTGATTGT+TGG + tig0023416:25868-25887 Msa1408770:intron 30.0%
TTAGCCTACATGTTATTGAT+TGG + tig0023416:25893-25912 Msa1408770:intron 30.0%
AATGCCAATCAATAACATGT+AGG - tig0023416:25900-25919 None:intergenic 30.0%
! TACATGTTATTGATTGGCAT+TGG + tig0023416:25899-25918 Msa1408770:intron 30.0%
ATTATCAACTTCCACATAGA+TGG - tig0023416:25939-25958 None:intergenic 30.0%
TATAACAATGTCGACAATTG+TGG - tig0023416:26247-26266 None:intergenic 30.0%
CCCAAATAATTTCTCACTTT+AGG - tig0023416:26397-26416 None:intergenic 30.0%
! AGTGAGAAATTATTTGGGAT+TGG + tig0023416:26399-26418 Msa1408770:CDS 30.0%
! TTTGATTTCTCATCCAGTTA+TGG + tig0023416:26474-26493 Msa1408770:intron 30.0%
CAAAATTGAAACTAACTGCA+AGG - tig0023416:26778-26797 None:intergenic 30.0%
!! CTTGCAGTTAGTTTCAATTT+TGG + tig0023416:26776-26795 Msa1408770:CDS 30.0%
TTAAATATTCAGCACATTGG+TGG + tig0023416:26897-26916 Msa1408770:intron 30.0%
! AAAAGCAAAGCAGATTTTGA+CGG + tig0023416:26946-26965 Msa1408770:intron 30.0%
TGTAGATAATTTATCTCCTG+GGG + tig0023416:27150-27169 Msa1408770:CDS 30.0%
GGCATGAAATATCACTAAAA+GGG - tig0023416:27230-27249 None:intergenic 30.0%
AGGCATGAAATATCACTAAA+AGG - tig0023416:27231-27250 None:intergenic 30.0%
!! TCAATCACATCTGTTTCTTT+TGG - tig0023416:27512-27531 None:intergenic 30.0%
ACACTATAAAATGTCTGCAA+TGG - tig0023416:27561-27580 None:intergenic 30.0%
! AGAAAAGTATGCATTCTCTT+AGG + tig0023416:27624-27643 Msa1408770:three_prime_UTR 30.0%
CGTCACAAGAAGTTAGTATA+TGG + tig0023416:24227-24246 Msa1408770:CDS 35.0%
GTTGTGACTTATGTTGTTGT+TGG - tig0023416:24382-24401 None:intergenic 35.0%
ACTCAATCTCTCTAACAACT+TGG + tig0023416:24439-24458 Msa1408770:CDS 35.0%
GTTTAATTCATATACGCCGT+CGG - tig0023416:24821-24840 None:intergenic 35.0%
TGGCTTGAAACCTAAAATAG+AGG + tig0023416:25409-25428 Msa1408770:intron 35.0%
GGTATATTGATAAGGAGAAC+CGG + tig0023416:25620-25639 Msa1408770:intron 35.0%
CATAAACAATGAAAGGCAGA+AGG - tig0023416:25686-25705 None:intergenic 35.0%
TCTGCCTTTCATTGTTTATG+AGG + tig0023416:25686-25705 Msa1408770:intron 35.0%
CTGCCTTTCATTGTTTATGA+GGG + tig0023416:25687-25706 Msa1408770:intron 35.0%
TGCCTTTCATTGTTTATGAG+GGG + tig0023416:25688-25707 Msa1408770:intron 35.0%
!! TTATTGATTGGCATTGGCAT+TGG + tig0023416:25905-25924 Msa1408770:intron 35.0%
! AACTCTTTTACCCTAACATC+AGG + tig0023416:26049-26068 Msa1408770:intron 35.0%
TTTACCACATCCTGATGTTA+GGG - tig0023416:26062-26081 None:intergenic 35.0%
ATTTACCACATCCTGATGTT+AGG - tig0023416:26063-26082 None:intergenic 35.0%
! CGTAGTGGAATTTGAATCAA+TGG + tig0023416:26114-26133 Msa1408770:intron 35.0%
!! TACAAAGCGTTGTCAAATAG+AGG + tig0023416:26159-26178 Msa1408770:intron 35.0%
! TTGTGGATTGAGGAAAATAG+CGG - tig0023416:26230-26249 None:intergenic 35.0%
TTGAAAATAATGACAGGCAG+TGG + tig0023416:26340-26359 Msa1408770:intron 35.0%
TAAGCTGAATGTACCATAAC+TGG - tig0023416:26490-26509 None:intergenic 35.0%
TGAGTTATGGGTAAAAGATC+TGG + tig0023416:26576-26595 Msa1408770:CDS 35.0%
! ACCTATTTCTTTCAAGCAGT+TGG + tig0023416:26734-26753 Msa1408770:CDS 35.0%
ACCAACTGCTTGAAAGAAAT+AGG - tig0023416:26738-26757 None:intergenic 35.0%
! GGCTACATTGTTGTTACTTA+AGG + tig0023416:27001-27020 Msa1408770:intron 35.0%
TACTTAAGGTTTGACATCCA+AGG + tig0023416:27015-27034 Msa1408770:intron 35.0%
ACTTAAGGTTTGACATCCAA+GGG + tig0023416:27016-27035 Msa1408770:intron 35.0%
TAGTTAATGATTTCCCTCAC+CGG + tig0023416:27050-27069 Msa1408770:intron 35.0%
! TTTTTCTTGAAATGAGGGTC+TGG - tig0023416:27085-27104 None:intergenic 35.0%
GTAGATAATTTATCTCCTGG+GGG + tig0023416:27151-27170 Msa1408770:CDS 35.0%
AATCTCTTAAGTATTCTCGC+AGG - tig0023416:27251-27270 None:intergenic 35.0%
TGAAAAAGACAACCACAAGA+GGG - tig0023416:27280-27299 None:intergenic 35.0%
CACTGTCACACAATATAGAA+GGG - tig0023416:27398-27417 None:intergenic 35.0%
TCACTGTCACACAATATAGA+AGG - tig0023416:27399-27418 None:intergenic 35.0%
TCTATATTGTGTGACAGTGA+AGG + tig0023416:27399-27418 Msa1408770:CDS 35.0%
ATGGTTATTAAGCAACCCTA+TGG + tig0023416:27422-27441 Msa1408770:CDS 35.0%
TGGTTATTAAGCAACCCTAT+GGG + tig0023416:27423-27442 Msa1408770:CDS 35.0%
ATAAAATGTCTGCAATGGAC+AGG - tig0023416:27556-27575 None:intergenic 35.0%
ATATGTTCAACATCAACCAC+AGG + tig0023416:27601-27620 Msa1408770:three_prime_UTR 35.0%
TTGAAGAGAAAGAGGGGAAA+TGG + tig0023416:24163-24182 Msa1408770:exon 40.0%
TGAAGAGAAAGAGGGGAAAT+GGG + tig0023416:24164-24183 Msa1408770:exon 40.0%
GAAGAAGAAGAAGAAGAGAG+AGG - tig0023416:24308-24327 None:intergenic 40.0%
TACTTGGGAAATAGAGGAAG+AGG - tig0023416:24345-24364 None:intergenic 40.0%
! AGCTGTTACTTGGGAAATAG+AGG - tig0023416:24351-24370 None:intergenic 40.0%
! GTCTTGTTCAGCTGTTACTT+GGG - tig0023416:24360-24379 None:intergenic 40.0%
! TGCTGACATTGGTTACGTAA+GGG - tig0023416:25188-25207 None:intergenic 40.0%
! TTGCTGACATTGGTTACGTA+AGG - tig0023416:25189-25208 None:intergenic 40.0%
! TGGTCCCTTACCTCTATTTT+AGG - tig0023416:25422-25441 None:intergenic 40.0%
GCCTTTCATTGTTTATGAGG+GGG + tig0023416:25689-25708 Msa1408770:intron 40.0%
ACCCCCTCATAAACAATGAA+AGG - tig0023416:25693-25712 None:intergenic 40.0%
TTTACCCTAACATCAGGATG+TGG + tig0023416:26055-26074 Msa1408770:intron 40.0%
TCAGGATGTGGTAAATGAGT+AGG + tig0023416:26067-26086 Msa1408770:intron 40.0%
AAATAGCAGCTATAGCGTAG+TGG + tig0023416:26099-26118 Msa1408770:intron 40.0%
!! AAAGCGTTGTCAAATAGAGG+CGG + tig0023416:26162-26181 Msa1408770:intron 40.0%
! ATGTCGACAATTGTGGATTG+AGG - tig0023416:26240-26259 None:intergenic 40.0%
!! GAGTAAGTGTGCTGTTTATC+AGG - tig0023416:26301-26320 None:intergenic 40.0%
AAATAATGACAGGCAGTGGT+AGG + tig0023416:26344-26363 Msa1408770:intron 40.0%
ACTTTGATTCCATGTGCAGA+TGG + tig0023416:26543-26562 Msa1408770:intron 40.0%
!! CAGTTGGTAGAATCATATCC+TGG + tig0023416:26750-26769 Msa1408770:CDS 40.0%
! TCACTGTCCTAATGGTTTGT+TGG + tig0023416:26837-26856 Msa1408770:intron 40.0%
AATCCAGCCAACAAACCATT+AGG - tig0023416:26847-26866 None:intergenic 40.0%
!! AATGGTTTGTTGGCTGGATT+TGG + tig0023416:26847-26866 Msa1408770:intron 40.0%
ATTTGTGGGATTGTGACTAC+AGG - tig0023416:26877-26896 None:intergenic 40.0%
! AAGAGTTTTGCAGAAGCCTT+TGG + tig0023416:27117-27136 Msa1408770:CDS 40.0%
TCTACAATAGCACCAACCAA+AGG - tig0023416:27136-27155 None:intergenic 40.0%
! GAGATTCATTTTCCCTCTTG+TGG + tig0023416:27265-27284 Msa1408770:intron 40.0%
GTGAAAAAGACAACCACAAG+AGG - tig0023416:27281-27300 None:intergenic 40.0%
!! CTTGTGGTTGTCTTTTTCAC+AGG + tig0023416:27281-27300 Msa1408770:intron 40.0%
GGTATTTGTACAGTCTGATG+TGG + tig0023416:27302-27321 Msa1408770:intron 40.0%
GTGCATCAACTTCATCAAAC+TGG - tig0023416:27353-27372 None:intergenic 40.0%
TATTGTGTGACAGTGAAGGA+TGG + tig0023416:27403-27422 Msa1408770:CDS 40.0%
GGTTATTAAGCAACCCTATG+GGG + tig0023416:27424-27443 Msa1408770:CDS 40.0%
TTCTGCATGAATCTCTCTCT+CGG - tig0023416:27457-27476 None:intergenic 40.0%
GAGATTCATGCAGAATTCGA+AGG + tig0023416:27462-27481 Msa1408770:CDS 40.0%
ATTCATGCAGAATTCGAAGG+AGG + tig0023416:27465-27484 Msa1408770:CDS 40.0%
TTCATGCAGAATTCGAAGGA+GGG + tig0023416:27466-27485 Msa1408770:CDS 40.0%
AAGGAGGGAAAATCTATCGA+AGG + tig0023416:27481-27500 Msa1408770:CDS 40.0%
! GAATGCATACTTTTCTCCTG+TGG - tig0023416:27620-27639 None:intergenic 40.0%
!! GAAATGGGTTATTGCTGTGG+AGG + tig0023416:24179-24198 Msa1408770:exon 45.0%
GGTGAAAATGAGAGTGAGAG+TGG - tig0023416:24278-24297 None:intergenic 45.0%
GAAGAAGAGAGAGGACGAAA+GGG - tig0023416:24299-24318 None:intergenic 45.0%
AGAAGAAGAGAGAGGACGAA+AGG - tig0023416:24300-24319 None:intergenic 45.0%
GAAATAGAGGAAGAGGAGAG+TGG - tig0023416:24338-24357 None:intergenic 45.0%
!! GGTCTTGTTCAGCTGTTACT+TGG - tig0023416:24361-24380 None:intergenic 45.0%
ACGCACATGGATGACTTATG+GGG - tig0023416:25270-25289 None:intergenic 45.0%
GACGCACATGGATGACTTAT+GGG - tig0023416:25271-25290 None:intergenic 45.0%
AGACGCACATGGATGACTTA+TGG - tig0023416:25272-25291 None:intergenic 45.0%
GTGTTTAACAGAGACGCACA+TGG - tig0023416:25283-25302 None:intergenic 45.0%
CCAGCCCCCTATGTTTAAAA+AGG - tig0023416:25392-25411 None:intergenic 45.0%
! CCTTTTTAAACATAGGGGGC+TGG + tig0023416:25389-25408 Msa1408770:intron 45.0%
CATCCAATATCCACCATGAG+TGG - tig0023416:25803-25822 None:intergenic 45.0%
!! CTCATGGTGGATATTGGATG+TGG + tig0023416:25803-25822 Msa1408770:CDS 45.0%
! TGGCTTGGATACCATCTATG+TGG + tig0023416:25925-25944 Msa1408770:intron 45.0%
GCAGTGGTAGGTTTCTTATG+TGG + tig0023416:26356-26375 Msa1408770:CDS 45.0%
TGGGATTGGAAATACGGCAA+AGG + tig0023416:26413-26432 Msa1408770:CDS 45.0%
GGGATTGGAAATACGGCAAA+GGG + tig0023416:26414-26433 Msa1408770:CDS 45.0%
TGGAAATACGGCAAAGGGTA+AGG + tig0023416:26419-26438 Msa1408770:intron 45.0%
! ATGGGTAAAAGATCTGGCTC+TGG + tig0023416:26582-26601 Msa1408770:CDS 45.0%
!! ATTGGGTGTCACTGTCCTAA+TGG + tig0023416:26829-26848 Msa1408770:intron 45.0%
!! TGTCCTAATGGTTTGTTGGC+TGG + tig0023416:26841-26860 Msa1408770:intron 45.0%
! GTTTTGCAGAAGCCTTTGGT+TGG + tig0023416:27121-27140 Msa1408770:CDS 45.0%
TAATTTATCTCCTGGGGGAC+AGG + tig0023416:27156-27175 Msa1408770:CDS 45.0%
AGAAAATATACCTGTCCCCC+AGG - tig0023416:27169-27188 None:intergenic 45.0%
ACAGTCTGATGTGGTTGAAG+TGG + tig0023416:27311-27330 Msa1408770:CDS 45.0%
TAAGCAACCCTATGGGGATT+AGG + tig0023416:27430-27449 Msa1408770:CDS 45.0%
CATTCTCTTAGGATGCCTAC+CGG + tig0023416:27635-27654 Msa1408770:three_prime_UTR 45.0%
!! ATTTATTTATTTGTAATTTA+AGG + tig0023416:27720-27739 Msa1408770:three_prime_UTR 5.0%
!! GGGGAAATGGGTTATTGCTG+TGG + tig0023416:24176-24195 Msa1408770:exon 50.0%
TGGGTTATTGCTGTGGAGGT+TGG + tig0023416:24183-24202 Msa1408770:CDS 50.0%
! CTCTGTCTAGAATGTCCACG+TGG + tig0023416:25241-25260 Msa1408770:intron 50.0%
CGCACATGGATGACTTATGG+GGG - tig0023416:25269-25288 None:intergenic 50.0%
GTGCGTCTCTGTTAAACACG+TGG + tig0023416:25284-25303 Msa1408770:intron 50.0%
!! CTGCCACTCATGGTGGATAT+TGG + tig0023416:25797-25816 Msa1408770:CDS 50.0%
!! GATTGGCATTGGCATTGGCT+TGG + tig0023416:25910-25929 Msa1408770:intron 50.0%
TGGTGAAGCGTGCTGAGTTA+TGG + tig0023416:26563-26582 Msa1408770:CDS 50.0%
GGTGAAGCGTGCTGAGTTAT+GGG + tig0023416:26564-26583 Msa1408770:CDS 50.0%
GAAACTAACTGCAAGGGTCC+AGG - tig0023416:26771-26790 None:intergenic 50.0%
GACTGCAGGCGATCACTTAT+TGG + tig0023416:26980-26999 Msa1408770:intron 50.0%
TCTCGGTCCTAATCCCCATA+GGG - tig0023416:27440-27459 None:intergenic 50.0%
!! TTCCAGTCTGGTACTGGTGC+AGG - tig0023416:25755-25774 None:intergenic 55.0%
ACCAGTACCAGACTGGAACC+AGG + tig0023416:25757-25776 Msa1408770:CDS 55.0%
ACCTGGTTCCAGTCTGGTAC+TGG - tig0023416:25761-25780 None:intergenic 55.0%
GCAAACACCTGGTTCCAGTC+TGG - tig0023416:25767-25786 None:intergenic 55.0%
CACGCTTCACCATCTGCACA+TGG - tig0023416:26555-26574 None:intergenic 55.0%
CTCTCGGTCCTAATCCCCAT+AGG - tig0023416:27441-27460 None:intergenic 55.0%
!! TGACTTATGGGGGTGCCACG+TGG - tig0023416:25259-25278 None:intergenic 60.0%
CTCCTGCACCAGTACCAGAC+TGG + tig0023416:25750-25769 Msa1408770:CDS 60.0%
GAGCAGGGTCTGCAAACACC+TGG - tig0023416:25778-25797 None:intergenic 60.0%
AGACCCTGCTCTGCCACTCA+TGG + tig0023416:25787-25806 Msa1408770:CDS 60.0%
CCACCATGAGTGGCAGAGCA+GGG - tig0023416:25793-25812 None:intergenic 60.0%
TCCACCATGAGTGGCAGAGC+AGG - tig0023416:25794-25813 None:intergenic 60.0%
CTGGACACTGCATCCGGTGA+GGG - tig0023416:27066-27085 None:intergenic 60.0%
TCTGGACACTGCATCCGGTG+AGG - tig0023416:27067-27086 None:intergenic 60.0%
GAGGGTCTGGACACTGCATC+CGG - tig0023416:27072-27091 None:intergenic 60.0%
CCCTGCTCTGCCACTCATGG+TGG + tig0023416:25790-25809 Msa1408770:CDS 65.0%
CGGCGTGAGACTGTGACTGC+AGG + tig0023416:26966-26985 Msa1408770:intron 65.0%
Chromosome Type Strat End Strand Name
tig0023416 gene 24162 27761 24162 ID=Msa1408770;Name=Msa1408770
tig0023416 mRNA 24162 27761 24162 ID=Msa1408770-mRNA-1;Parent=Msa1408770;Name=Msa1408770-mRNA-1;_AED=0.41;_eAED=0.41;_QI=20|1|1|1|1|1|8|234|316
tig0023416 exon 24162 24460 24162 ID=Msa1408770-mRNA-1:exon:25692;Parent=Msa1408770-mRNA-1
tig0023416 exon 24537 24593 24537 ID=Msa1408770-mRNA-1:exon:25693;Parent=Msa1408770-mRNA-1
tig0023416 exon 25749 25824 25749 ID=Msa1408770-mRNA-1:exon:25694;Parent=Msa1408770-mRNA-1
tig0023416 exon 26356 26435 26356 ID=Msa1408770-mRNA-1:exon:25695;Parent=Msa1408770-mRNA-1
tig0023416 exon 26562 26611 26562 ID=Msa1408770-mRNA-1:exon:25696;Parent=Msa1408770-mRNA-1
tig0023416 exon 26713 26797 26713 ID=Msa1408770-mRNA-1:exon:25697;Parent=Msa1408770-mRNA-1
tig0023416 exon 27079 27177 27079 ID=Msa1408770-mRNA-1:exon:25698;Parent=Msa1408770-mRNA-1
tig0023416 exon 27303 27761 27303 ID=Msa1408770-mRNA-1:exon:25699;Parent=Msa1408770-mRNA-1
tig0023416 five_prime_UTR 24162 24181 24162 ID=Msa1408770-mRNA-1:five_prime_utr;Parent=Msa1408770-mRNA-1
tig0023416 CDS 24182 24460 24182 ID=Msa1408770-mRNA-1:cds;Parent=Msa1408770-mRNA-1
tig0023416 CDS 24537 24593 24537 ID=Msa1408770-mRNA-1:cds;Parent=Msa1408770-mRNA-1
tig0023416 CDS 25749 25824 25749 ID=Msa1408770-mRNA-1:cds;Parent=Msa1408770-mRNA-1
tig0023416 CDS 26356 26435 26356 ID=Msa1408770-mRNA-1:cds;Parent=Msa1408770-mRNA-1
tig0023416 CDS 26562 26611 26562 ID=Msa1408770-mRNA-1:cds;Parent=Msa1408770-mRNA-1
tig0023416 CDS 26713 26797 26713 ID=Msa1408770-mRNA-1:cds;Parent=Msa1408770-mRNA-1
tig0023416 CDS 27079 27177 27079 ID=Msa1408770-mRNA-1:cds;Parent=Msa1408770-mRNA-1
tig0023416 CDS 27303 27527 27303 ID=Msa1408770-mRNA-1:cds;Parent=Msa1408770-mRNA-1
tig0023416 three_prime_UTR 27528 27761 27528 ID=Msa1408770-mRNA-1:three_prime_utr;Parent=Msa1408770-mRNA-1
Gene Sequence

>Msa1408770

ATGGGTTATTGCTGTGGAGGTTGGCGTATATTACAGATACAGAGTCGTCACAAGAAGTTAGTATATGGCATTGATACTGCTTTAGTAATGTTACCACTCTCACTCTCATTTTCACCCTTTCGTCCTCTCTCTTCTTCTTCTTCTTCTTCTCTTCCACTCTCCTCTTCCTCTATTTCCCAAGTAACAGCTGAACAAGACCAACAACAACATAAGTCACAACGAAAAAGCTCACAACTTGTCGCATTAGAATATGCTGAACTCAATCTCTCTAACAACTTGGATATGGGTCATGTCAGAATCAGACAACATGTCAATCCCTTAAGTTCTTCTTTCTCTACTCCTGCACCAGTACCAGACTGGAACCAGGTGTTTGCAGACCCTGCTCTGCCACTCATGGTGGATATTGGATGTGGCAGTGGTAGGTTTCTTATGTGGCTTGCAAAAAGAACACCTAAAGTGAGAAATTATTTGGGATTGGAAATACGGCAAAGGATGGTGAAGCGTGCTGAGTTATGGGTAAAAGATCTGGCTCTGGATAACATACATTTCTTGTTTGCAAATGCACCTATTTCTTTCAAGCAGTTGGTAGAATCATATCCTGGACCCTTGCAGTTAGTTTCAATTTTGTGTCCAGACCCTCATTTCAAGAAAAAACATCATAAAAGAAGAGTTTTGCAGAAGCCTTTGGTTGGTGCTATTGTAGATAATTTATCTCCTGGGGGACAGGTATTTGTACAGTCTGATGTGGTTGAAGTGGCACTTGACATGAAAAACCAGTTTGATGAAGTTGATGCACTTAGTCACACAGATGCTTTGAACCCTTCTATATTGTGTGACAGTGAAGGATGGTTATTAAGCAACCCTATGGGGATTAGGACCGAGAGAGAGATTCATGCAGAATTCGAAGGAGGGAAAATCTATCGAAGGTTGTACCAAAAGAAACAGATGTGA

Protein sequence

>Msa1408770

MGYCCGGWRILQIQSRHKKLVYGIDTALVMLPLSLSFSPFRPLSSSSSSSLPLSSSSISQVTAEQDQQQHKSQRKSSQLVALEYAELNLSNNLDMGHVRIRQHVNPLSSSFSTPAPVPDWNQVFADPALPLMVDIGCGSGRFLMWLAKRTPKVRNYLGLEIRQRMVKRAELWVKDLALDNIHFLFANAPISFKQLVESYPGPLQLVSILCPDPHFKKKHHKRRVLQKPLVGAIVDNLSPGGQVFVQSDVVEVALDMKNQFDEVDALSHTDALNPSILCDSEGWLLSNPMGIRTEREIHAEFEGGKIYRRLYQKKQM*