AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469390 MtrunA17_Chr3g0123991 98.596 570 8 0 1 570 1 570 0.0 1182
Msa0469390 MtrunA17_Chr5g0430381 77.878 556 123 0 1 556 1 556 0.0 938
Msa0469390 MtrunA17_Chr3g0105311 74.517 569 142 2 1 566 1 569 0.0 913
Msa0469390 MtrunA17_Chr5g0429171 77.083 48 11 0 509 556 30 77 7.74e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469390 AT5G10240.1 85.199 554 82 0 1 554 1 554 0.0 1021
Msa0469390 AT5G65010.1 85.455 550 80 0 1 550 1 550 0.0 1018
Msa0469390 AT5G65010.2 85.299 551 80 1 1 550 1 551 0.0 1015
Msa0469390 AT5G10240.2 84.657 554 84 1 1 554 1 553 0.0 1010
Msa0469390 AT3G47340.1 75.221 565 139 1 1 565 1 564 0.0 934
Msa0469390 AT3G47340.2 76.378 508 120 0 1 508 1 508 0.0 856
Msa0469390 AT3G47340.3 77.218 417 95 0 1 417 1 417 0.0 714
Msa0469390 AT3G47340.4 77.483 302 68 0 116 417 1 302 0.0 520

Find 154 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTACCCCTCTTTATT+TGG 0.114873 3_3:+71230480 Msa0469390:CDS
CAGCAGGCTAATAATATTTA+TGG 0.142182 3_3:+71234515 Msa0469390:three_prime_UTR
CCAAGCCGAAGTTGATTTAT+TGG 0.156555 3_3:-71233169 None:intergenic
CCAAGTACAACCATGCTTTA+AGG 0.164598 3_3:+71234479 Msa0469390:three_prime_UTR
ATACAAACCTTTGGCAAATA+TGG 0.166150 3_3:-71233658 None:intergenic
TTCTCTATCCTTTCAATATC+AGG 0.209485 3_3:-71233598 None:intergenic
GAAGGTTCAGATGAAATATT+TGG 0.221785 3_3:+71232920 Msa0469390:CDS
CAAATCATTGGGAGTGAAAA+TGG 0.232355 3_3:+71232886 Msa0469390:CDS
TTGGACTGATGGGCAAATTT+AGG 0.235413 3_3:-71234583 None:intergenic
TACCCCTCTTTATTTGGGTT+GGG 0.252968 3_3:+71230486 Msa0469390:CDS
GGCATTACCCCTCTTTATTT+GGG 0.262355 3_3:+71230481 Msa0469390:CDS
CTTCCTTGTTAGGCGCCTTA+TGG 0.267987 3_3:-71232958 None:intergenic
TTCTATGGCGTTAGGTTAAT+GGG 0.271922 3_3:+71230179 Msa0469390:intron
GTTCTATGGCGTTAGGTTAA+TGG 0.276233 3_3:+71230178 Msa0469390:intron
GCTATTGTGGACCCTACTTC+TGG 0.276442 3_3:+71230014 Msa0469390:CDS
TGATGAAGCTCTTCCTTGTT+AGG 0.297491 3_3:-71232968 None:intergenic
TGCAGTGGCCAATAGATATT+TGG 0.298358 3_3:+71232412 Msa0469390:CDS
TTCGATGATGCGAGCGCGTT+TGG 0.303802 3_3:-71229907 None:intergenic
ATTGCTGCTCGTGATGCTAT+TGG 0.320060 3_3:+71230460 Msa0469390:CDS
TGTGATTAGTATGAAGAATA+TGG 0.322666 3_3:+71230367 Msa0469390:intron
CAATAAATCAACTTCGGCTT+GGG 0.326748 3_3:+71233170 Msa0469390:CDS
TATCGATCCGGAGTGGAAAA+TGG 0.332343 3_3:+71233248 Msa0469390:CDS
CGAACTTCATTTCACAGTTC+AGG 0.340310 3_3:+71232663 Msa0469390:CDS
CCTTAAAGCATGGTTGTACT+TGG 0.352664 3_3:-71234479 None:intergenic
AAATGTATATATCTGACTTC+GGG 0.353875 3_3:+71234389 Msa0469390:three_prime_UTR
TTACCCCTCTTTATTTGGGT+TGG 0.360345 3_3:+71230485 Msa0469390:CDS
GCATATATATTCCAGCAAAC+AGG 0.371801 3_3:+71231435 Msa0469390:CDS
CAATCCAGCATGGTCTTTAG+AGG 0.380651 3_3:-71234361 None:intergenic
AGAGGCACGTGTACCGTTCT+TGG 0.383283 3_3:+71233197 Msa0469390:CDS
ACCCCTCTTTATTTGGGTTG+GGG 0.385041 3_3:+71230487 Msa0469390:CDS
TAAAACTACTGAAGAGAGTT+GGG 0.386734 3_3:+71234435 Msa0469390:three_prime_UTR
TGTTCTGTTGTCCGGAGGAC+TGG 0.389790 3_3:+71232373 Msa0469390:CDS
CCCTTTGGTGTTCTGTTGTC+CGG 0.394985 3_3:+71232365 Msa0469390:CDS
TTACATCATATGTTTCAATA+TGG 0.407697 3_3:-71232817 None:intergenic
CCTTCAGGTCGTGCCGCGCT+TGG 0.420882 3_3:+71234275 Msa0469390:CDS
GCTGCCAGGTCAACAGTTCC+AGG 0.421132 3_3:+71234182 Msa0469390:CDS
TACTTTCTGCATTGGTATAG+AGG 0.424643 3_3:+71232475 Msa0469390:CDS
CAGTTGGATTGATGGTTTGA+AGG 0.424749 3_3:+71233803 Msa0469390:CDS
GTCGGATACAGTTGGATTGA+TGG 0.430598 3_3:+71233795 Msa0469390:CDS
GTTGGATCATAGCGTGTTGA+TGG 0.432444 3_3:-71231652 None:intergenic
AGTATCAGCCAAATATCTAT+TGG 0.434666 3_3:-71232420 None:intergenic
TCTTTAGAGGGATCCATTGT+CGG 0.443265 3_3:-71234348 None:intergenic
TATTGAAAGGATAGAGAAAT+GGG 0.451135 3_3:+71233603 Msa0469390:CDS
CATGCCACACTAGGGCCTCC+TGG 0.457389 3_3:-71234200 None:intergenic
ATATTGAAAGGATAGAGAAA+TGG 0.459884 3_3:+71233602 Msa0469390:CDS
TATTTGGGTTGGGGCCATGA+TGG 0.462409 3_3:+71230496 Msa0469390:CDS
TACTGCAAAAGCTGTGGAAT+GGG 0.464980 3_3:+71234226 Msa0469390:CDS
AGGTTACCTGTATTTCCATA+AGG 0.465018 3_3:+71232943 Msa0469390:CDS
TACTGTCAAAAGTACACAGT+TGG 0.468294 3_3:-71229797 None:intergenic
AAATCTCATCAATTTCGAAC+TGG 0.470336 3_3:+71230238 Msa0469390:CDS
GCAGTACTGCATGCCACACT+AGG 0.471392 3_3:-71234209 None:intergenic
TAGGCGCCTTATGGAAATAC+AGG 0.475864 3_3:-71232949 None:intergenic
AGAAGAGTTTGTTGATATGC+TGG 0.476984 3_3:+71230390 Msa0469390:CDS
AAAGAGGTAGCAAATTATCT+TGG 0.479356 3_3:+71232628 Msa0469390:CDS
AAAATGTATATATCTGACTT+CGG 0.479389 3_3:+71234388 Msa0469390:three_prime_UTR
AAGTTGATTTATTGGCTCTC+AGG 0.481018 3_3:-71233161 None:intergenic
CTCGTCACTTGTTGCTGCAG+TGG 0.482865 3_3:+71232397 Msa0469390:CDS
CAATGCAAACCACTCCAATC+AGG 0.489191 3_3:-71229957 None:intergenic
ATAAAACTACTGAAGAGAGT+TGG 0.489833 3_3:+71234434 Msa0469390:three_prime_UTR
TGCTATCGATCTGAGTTAAA+CGG 0.497338 3_3:+71229731 None:intergenic
TACTGACACTGCCCGTCAGT+GGG 0.497561 3_3:+71232439 Msa0469390:CDS
CTTTAGAGGGATCCATTGTC+GGG 0.500502 3_3:-71234347 None:intergenic
AGAGGTTGATCTCCAGAAGT+AGG 0.500746 3_3:-71230026 None:intergenic
GATACGTACGGTGACAATAA+CGG 0.505224 3_3:-71230066 None:intergenic
CATTTCAACAGGGTGCTGCC+AGG 0.506834 3_3:+71234168 Msa0469390:intron
CCAATAAATCAACTTCGGCT+TGG 0.506921 3_3:+71233169 Msa0469390:CDS
GTGCGGAATCTTAGCAGTGT+TGG 0.507911 3_3:+71229863 Msa0469390:CDS
TGCGGAATCTTAGCAGTGTT+GGG 0.508911 3_3:+71229864 Msa0469390:CDS
CAGTTACATACTTTCTGCAT+TGG 0.510357 3_3:+71232467 Msa0469390:CDS
AACTTCGGCTTGGGGTATAG+AGG 0.510802 3_3:+71233179 Msa0469390:CDS
TCATCAACGTCTTGCTATTG+TGG 0.511777 3_3:+71230001 Msa0469390:CDS
ACTGTCAAAAGTACACAGTT+GGG 0.513941 3_3:-71229796 None:intergenic
CACTGCCATGGATATCGATC+CGG 0.514410 3_3:+71233236 Msa0469390:CDS
TGCGACATAGAGGACCTGAT+TGG 0.528704 3_3:+71229943 Msa0469390:CDS
GTCTTGTCATAGTTGTAAAG+AGG 0.529718 3_3:-71230044 None:intergenic
GGAGTGAAAATGGTTCTGTC+TGG 0.532933 3_3:+71232896 Msa0469390:CDS
TTTCTGGACATAAGAAACAT+TGG 0.539930 3_3:-71232860 None:intergenic
GCCTCCTGGAACTGTTGACC+TGG 0.540604 3_3:-71234186 None:intergenic
GGTTCAGATGAAATATTTGG+AGG 0.542536 3_3:+71232923 Msa0469390:CDS
AGCTGCATGAACACCAAGCG+CGG 0.545486 3_3:-71234288 None:intergenic
ATAAATTCTTTATCCAAGAA+CGG 0.547808 3_3:-71233210 None:intergenic
TGGCCCCAACCCAAATAAAG+AGG 0.550694 3_3:-71230490 None:intergenic
AAGTGACGAGTCCAGTCCTC+CGG 0.552950 3_3:-71232384 None:intergenic
GATCCCTCTAAAGACCATGC+TGG 0.556208 3_3:+71234357 Msa0469390:exon
AAACACTCCTACCACAAAAG+AGG 0.557038 3_3:+71233969 Msa0469390:CDS
AAAATAAAAGAGCCCGACAA+TGG 0.557915 3_3:+71234335 Msa0469390:CDS
GAGGTTGATCTCCAGAAGTA+GGG 0.558161 3_3:-71230025 None:intergenic
TGTTCATGCAGCTGCATACA+AGG 0.562587 3_3:+71234298 Msa0469390:CDS
AACACTCCTACCACAAAAGA+GGG 0.564176 3_3:+71233970 Msa0469390:CDS
CCAAGCGCGGCACGACCTGA+AGG 0.564595 3_3:-71234275 None:intergenic
TTTGCGTGAGGCCTTTGAGA+GGG 0.566242 3_3:+71231678 Msa0469390:CDS
ATGATGACTGATGTACCCTT+TGG 0.566933 3_3:+71232350 Msa0469390:CDS
GGCCCCAACCCAAATAAAGA+GGG 0.568153 3_3:-71230489 None:intergenic
ACAAAGCGCATTGGACTGAT+GGG 0.569774 3_3:-71234593 None:intergenic
AGTTTGTTGATATGCTGGAT+GGG 0.570850 3_3:+71230395 Msa0469390:CDS
AATCTTAGCAGTGTTGGGTG+TGG 0.573813 3_3:+71229869 Msa0469390:CDS
AGAATTTATCAACACTGCCA+TGG 0.574909 3_3:+71233224 Msa0469390:CDS
TTGCTGGAATATATATGCCC+TGG 0.575185 3_3:-71231430 None:intergenic
AAGGCCTCACGCAAAACCGT+TGG 0.575646 3_3:-71231670 None:intergenic
TAACTGTGATCCCCACTGAC+GGG 0.578963 3_3:-71232450 None:intergenic
AGTTCTAAAACCTTAAAGCA+TGG 0.581950 3_3:-71234489 None:intergenic
CCGGACAACAGAACACCAAA+GGG 0.583577 3_3:-71232365 None:intergenic
AGATAAAGCCTGATATTGAA+AGG 0.584487 3_3:+71233590 Msa0469390:intron
CATATATATTCCAGCAAACA+GGG 0.584924 3_3:+71231436 Msa0469390:CDS
GGATTTGAGAGCCGCAAAAG+AGG 0.588975 3_3:+71232612 Msa0469390:CDS
ATACTGACACTGCCCGTCAG+TGG 0.589598 3_3:+71232438 Msa0469390:CDS
GCGATGGTGTCGGATACAGT+TGG 0.589745 3_3:+71233787 Msa0469390:CDS
TTTCCATAAGGCGCCTAACA+AGG 0.590033 3_3:+71232955 Msa0469390:CDS
CAAAAGAGGGATACCACTAC+AGG 0.590975 3_3:+71233983 Msa0469390:CDS
GAGAGCCAATAAATCAACTT+CGG 0.592271 3_3:+71233164 Msa0469390:CDS
AATAAATCAACTTCGGCTTG+GGG 0.592392 3_3:+71233171 Msa0469390:CDS
GAGTTTGTTGATATGCTGGA+TGG 0.592504 3_3:+71230394 Msa0469390:CDS
GTAACTGTGATCCCCACTGA+CGG 0.594247 3_3:-71232451 None:intergenic
TTGCAGGAGGATTAAGAAGG+TGG 0.595137 3_3:+71231599 Msa0469390:intron
GGAAGGTATAGATGCACTTG+AGG 0.595941 3_3:+71232784 Msa0469390:intron
ATCAACACGCTATGATCCAA+CGG 0.596803 3_3:+71231654 Msa0469390:CDS
GCATCATCGAATTGTCTCGC+AGG 0.596887 3_3:+71229919 Msa0469390:CDS
TCTCGCAGGTTGCGACATAG+AGG 0.597101 3_3:+71229933 Msa0469390:CDS
CCACTCCGGATCGATATCCA+TGG 0.600070 3_3:-71233241 None:intergenic
TGAGAATCCATATTTGCCAA+AGG 0.602556 3_3:+71233651 Msa0469390:CDS
AATCCAGCATGGTCTTTAGA+GGG 0.604010 3_3:-71234360 None:intergenic
AAAATGGTTCTGTCTGGAGA+AGG 0.606208 3_3:+71232902 Msa0469390:CDS
GGAATAGCTAACCCTCTCAA+AGG 0.609261 3_3:-71231689 None:intergenic
TCCGGACAACAGAACACCAA+AGG 0.611807 3_3:-71232366 None:intergenic
GTACTGCAAAAGCTGTGGAA+TGG 0.613846 3_3:+71234225 Msa0469390:CDS
GAACAGTTCAGCGATGGTGT+CGG 0.616755 3_3:+71233777 Msa0469390:CDS
GCACATATTGTACAGGCAGA+AGG 0.619788 3_3:+71233755 Msa0469390:intron
TCTTTGCAGGAGGATTAAGA+AGG 0.620740 3_3:+71231596 Msa0469390:intron
CAGTACTGCATGCCACACTA+GGG 0.621411 3_3:-71234208 None:intergenic
CAGAAGGAACAGTTCAGCGA+TGG 0.621633 3_3:+71233771 Msa0469390:CDS
CAAGCGCGGCACGACCTGAA+GGG 0.622971 3_3:-71234274 None:intergenic
TTATCAGATATACTAAAAGG+TGG 0.626788 3_3:+71234545 Msa0469390:three_prime_UTR
GCAGCAACCACATACCATCA+TGG 0.631607 3_3:-71230510 None:intergenic
TTTGGTGTTCTGTTGTCCGG+AGG 0.633191 3_3:+71232368 Msa0469390:CDS
GAGTTAAACGGAGCTAAACA+AGG 0.634851 3_3:+71229743 Msa0469390:five_prime_UTR
TTGTTGGCAGCCGTCATGTG+CGG 0.647753 3_3:+71229846 Msa0469390:exon
CATAGAGGACCTGATTGGAG+TGG 0.648591 3_3:+71229948 Msa0469390:CDS
AAAACTACTGAAGAGAGTTG+GGG 0.650442 3_3:+71234436 Msa0469390:three_prime_UTR
AGTTCCAGGAGGCCCTAGTG+TGG 0.651099 3_3:+71234196 Msa0469390:CDS
CTGGAATATATATGCCCTGG+AGG 0.658198 3_3:-71231427 None:intergenic
CTGTGGAATGGGATGCAGCA+TGG 0.665004 3_3:+71234237 Msa0469390:CDS
TAGCAAGACGTTGATGAGCG+AGG 0.666348 3_3:-71229995 None:intergenic
TGCTAAGATTCCGCACATGA+CGG 0.669260 3_3:-71229856 None:intergenic
CCATGGATATCGATCCGGAG+TGG 0.674824 3_3:+71233241 Msa0469390:CDS
TCTATGGCGTTAGGTTAATG+GGG 0.680597 3_3:+71230180 Msa0469390:intron
GCCCCAACCCAAATAAAGAG+GGG 0.687236 3_3:-71230488 None:intergenic
GAACTGTGAAATGAAGTTCG+TGG 0.696854 3_3:-71232660 None:intergenic
GCCAGGTCAACAGTTCCAGG+AGG 0.705953 3_3:+71234185 Msa0469390:CDS
ATGCAGTACTGCAAAAGCTG+TGG 0.707096 3_3:+71234220 Msa0469390:CDS
ATTTGCTCTGAGAACCATGG+TGG 0.708717 3_3:-71231628 None:intergenic
GGAATTTGCTCTGAGAACCA+TGG 0.723639 3_3:-71231631 None:intergenic
ACTGACACTGCCCGTCAGTG+GGG 0.727167 3_3:+71232440 Msa0469390:CDS
GAAGGTGGTACAATCCACCA+TGG 0.728627 3_3:+71231614 Msa0469390:CDS
CTGTGAAATGAAGTTCGTGG+TGG 0.746248 3_3:-71232657 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTTATTCAAAAAAAAAA+AGG - chr3_3:71230954-71230973 None:intergenic 10.0%
!! AATAATTACATAAAAATATG+GGG - chr3_3:71233037-71233056 None:intergenic 10.0%
!! TGAATTAGATATATCATTTA+TGG + chr3_3:71231319-71231338 Msa0469390:intron 15.0%
!!! AATTATGGTATATTACTTTT+CGG - chr3_3:71233003-71233022 None:intergenic 15.0%
!!! AATTTATTTTACAAGAAAAC+TGG - chr3_3:71233449-71233468 None:intergenic 15.0%
!!! TTCATGTTCAAATTTAAAAT+TGG - chr3_3:71234095-71234114 None:intergenic 15.0%
!! TAAAAAACATCAATCAGATT+TGG + chr3_3:71229818-71229837 Msa0469390:five_prime_UTR 20.0%
!! ACAGTTTAAAAAAATTACAC+AGG - chr3_3:71230699-71230718 None:intergenic 20.0%
!! TTCAAAGTCATACATTTAAT+TGG + chr3_3:71230775-71230794 Msa0469390:intron 20.0%
!!! TGAAGCTACAAATTTTATAT+AGG - chr3_3:71230867-71230886 None:intergenic 20.0%
!! ACATATCTGTATAAACATTA+AGG + chr3_3:71231086-71231105 Msa0469390:intron 20.0%
!! TACATTTCCTTGAAAAAATT+AGG - chr3_3:71231158-71231177 None:intergenic 20.0%
!! TTAGATATATCATTTATGGA+AGG + chr3_3:71231323-71231342 Msa0469390:intron 20.0%
!! TAGATATATCATTTATGGAA+GGG + chr3_3:71231324-71231343 Msa0469390:intron 20.0%
!! TTATAGACAAAATAAAAGTG+AGG - chr3_3:71232029-71232048 None:intergenic 20.0%
!! TTTACGTATAATTTCTCAAA+AGG - chr3_3:71232134-71232153 None:intergenic 20.0%
!! TAACCAAGAAAAAGTTAAAA+AGG - chr3_3:71232297-71232316 None:intergenic 20.0%
!! CATATAACTACTATTACTTA+TGG - chr3_3:71232551-71232570 None:intergenic 20.0%
!! TTACATCATATGTTTCAATA+TGG - chr3_3:71232820-71232839 None:intergenic 20.0%
!! ATAAATTCTTTATCCAAGAA+CGG - chr3_3:71233213-71233232 None:intergenic 20.0%
!! TTGTAAAATAAATTTGTCTG+TGG + chr3_3:71233455-71233474 Msa0469390:intron 20.0%
!! TATCAAGTATATAATGTCAA+TGG - chr3_3:71233896-71233915 None:intergenic 20.0%
!! GACATTATATACTTGATAAA+TGG + chr3_3:71233898-71233917 Msa0469390:intron 20.0%
!!! TTCAAATTTAAAATTGGTCA+AGG - chr3_3:71234089-71234108 None:intergenic 20.0%
!! AAAATGTATATATCTGACTT+CGG + chr3_3:71234388-71234407 Msa0469390:three_prime_UTR 20.0%
!!! CTTTTATCAGATATACTAAA+AGG + chr3_3:71234542-71234561 Msa0469390:three_prime_UTR 20.0%
! TGTGATTAGTATGAAGAATA+TGG + chr3_3:71230367-71230386 Msa0469390:intron 25.0%
!! GCTTTAAATTGCACAATAAA+TGG - chr3_3:71230601-71230620 None:intergenic 25.0%
!!! AACATGTCCTAATTTTTTCA+AGG + chr3_3:71231148-71231167 Msa0469390:intron 25.0%
!! AGGCATTAATCTTTTACATT+CGG + chr3_3:71231218-71231237 Msa0469390:intron 25.0%
! TAAAGAGTTGTCTATACATT+TGG + chr3_3:71231267-71231286 Msa0469390:intron 25.0%
! TACATTTGGTTATGTATTCA+TGG + chr3_3:71231281-71231300 Msa0469390:intron 25.0%
!!! ATTATTTTGCAGGATCAATA+TGG + chr3_3:71231350-71231369 Msa0469390:intron 25.0%
!! AATTTATATCTTTTCCTCCA+GGG + chr3_3:71231413-71231432 Msa0469390:CDS 25.0%
! TTTACAAGAGTAACCATAAT+CGG - chr3_3:71231489-71231508 None:intergenic 25.0%
! AGTAAAATTTAGACAGTAGA+AGG - chr3_3:71231533-71231552 None:intergenic 25.0%
! CAAACGATGAAATAATTCAA+TGG - chr3_3:71231723-71231742 None:intergenic 25.0%
! ATATCATTTGCAACAAACTT+AGG + chr3_3:71232048-71232067 Msa0469390:intron 25.0%
!!! CATCCTTTTTAACTTTTTCT+TGG + chr3_3:71232291-71232310 Msa0469390:intron 25.0%
! AAGGTAAAATGGTAGATAAA+GGG - chr3_3:71232700-71232719 None:intergenic 25.0%
!! TTCTATTTTCGCTATATATC+AGG + chr3_3:71232763-71232782 Msa0469390:intron 25.0%
! TCCAGAAAAATCAAATCATT+GGG + chr3_3:71232875-71232894 Msa0469390:CDS 25.0%
! ACACCAAAAACTTGAATAAA+CGG - chr3_3:71233098-71233117 None:intergenic 25.0%
! TTGTAACTTTACTTCTTTCT+TGG + chr3_3:71233273-71233292 Msa0469390:intron 25.0%
! AATTTGTCGTTAATTTCATG+AGG - chr3_3:71233566-71233585 None:intergenic 25.0%
! ATATTGAAAGGATAGAGAAA+TGG + chr3_3:71233602-71233621 Msa0469390:CDS 25.0%
! TATTGAAAGGATAGAGAAAT+GGG + chr3_3:71233603-71233622 Msa0469390:CDS 25.0%
!!! TTTTGAGAAGTTATTTCCAA+AGG + chr3_3:71234011-71234030 Msa0469390:CDS 25.0%
! AAATGTATATATCTGACTTC+GGG + chr3_3:71234389-71234408 Msa0469390:three_prime_UTR 25.0%
! TTATCAGATATACTAAAAGG+TGG + chr3_3:71234545-71234564 Msa0469390:three_prime_UTR 25.0%
!!! ATCAGATTTGGTTTTGTTGT+TGG + chr3_3:71229830-71229849 Msa0469390:five_prime_UTR 30.0%
GATAGAAGATAAGATACGTA+CGG - chr3_3:71230081-71230100 None:intergenic 30.0%
! TTGTCACATTTTCTGTTCTA+TGG + chr3_3:71230164-71230183 Msa0469390:intron 30.0%
!!! GTTTCTGTCTCAATTTTTTG+TGG - chr3_3:71230216-71230235 None:intergenic 30.0%
AAATCTCATCAATTTCGAAC+TGG + chr3_3:71230238-71230257 Msa0469390:CDS 30.0%
! TCTTGTAAGTGTTTTCTAGA+AGG + chr3_3:71230285-71230304 Msa0469390:intron 30.0%
AATAAATGGTTCAATTCGAG+CGG - chr3_3:71230587-71230606 None:intergenic 30.0%
AATCATCTGACAATCACAAT+TGG - chr3_3:71230725-71230744 None:intergenic 30.0%
TGTTTATACAGATATGTAGC+AGG - chr3_3:71231083-71231102 None:intergenic 30.0%
! CAATTTATATCTTTTCCTCC+AGG + chr3_3:71231412-71231431 Msa0469390:CDS 30.0%
CATATATATTCCAGCAAACA+GGG + chr3_3:71231436-71231455 Msa0469390:CDS 30.0%
!!! ATTATTTTTACCCTGTTTGC+TGG - chr3_3:71231449-71231468 None:intergenic 30.0%
!!! CTCGTTATTTTTTCCGATTA+TGG + chr3_3:71231473-71231492 Msa0469390:intron 30.0%
AGTAGAAGGAGAAAAACAAA+TGG - chr3_3:71231519-71231538 None:intergenic 30.0%
TGTAAGTGTGTATCTTATCT+TGG - chr3_3:71231556-71231575 None:intergenic 30.0%
AATAATTCAATGGATGAGAC+AGG - chr3_3:71231713-71231732 None:intergenic 30.0%
CACAAAATGTTGTCAAATAG+CGG + chr3_3:71231857-71231876 Msa0469390:intron 30.0%
AATTCCAATCATGAGCTTAT+GGG - chr3_3:71232159-71232178 None:intergenic 30.0%
AAATTCCAATCATGAGCTTA+TGG - chr3_3:71232160-71232179 None:intergenic 30.0%
ATAAGCTCATGATTGGAATT+TGG + chr3_3:71232159-71232178 Msa0469390:intron 30.0%
CTTAGTATCAACTACATCAA+AGG - chr3_3:71232256-71232275 None:intergenic 30.0%
AGTATCAGCCAAATATCTAT+TGG - chr3_3:71232423-71232442 None:intergenic 30.0%
!!! ATAATTTGCTACCTCTTTTG+CGG - chr3_3:71232626-71232645 None:intergenic 30.0%
AAAGAGGTAGCAAATTATCT+TGG + chr3_3:71232628-71232647 Msa0469390:CDS 30.0%
CAAGGTAAAATGGTAGATAA+AGG - chr3_3:71232701-71232720 None:intergenic 30.0%
! ATTTTCGCTATATATCAGGA+AGG + chr3_3:71232767-71232786 Msa0469390:intron 30.0%
TTTCTGGACATAAGAAACAT+TGG - chr3_3:71232863-71232882 None:intergenic 30.0%
GTCCAGAAAAATCAAATCAT+TGG + chr3_3:71232874-71232893 Msa0469390:CDS 30.0%
!! TCCCAATGATTTGATTTTTC+TGG - chr3_3:71232879-71232898 None:intergenic 30.0%
GAAGGTTCAGATGAAATATT+TGG + chr3_3:71232920-71232939 Msa0469390:CDS 30.0%
!! TACCCGTTTATTCAAGTTTT+TGG + chr3_3:71233092-71233111 Msa0469390:intron 30.0%
CACCAAAAACTTGAATAAAC+GGG - chr3_3:71233097-71233116 None:intergenic 30.0%
AGATAAAGCCTGATATTGAA+AGG + chr3_3:71233590-71233609 Msa0469390:intron 30.0%
TTCTCTATCCTTTCAATATC+AGG - chr3_3:71233601-71233620 None:intergenic 30.0%
ATACAAACCTTTGGCAAATA+TGG - chr3_3:71233661-71233680 None:intergenic 30.0%
AGTTGATTGATACAAACCTT+TGG - chr3_3:71233670-71233689 None:intergenic 30.0%
!! TTTTTCAGCACATATTGTAC+AGG + chr3_3:71233748-71233767 Msa0469390:intron 30.0%
TATATACTTGATAAATGGCC+AGG + chr3_3:71233903-71233922 Msa0469390:intron 30.0%
AAGACTATACAATTCACCTT+TGG - chr3_3:71234030-71234049 None:intergenic 30.0%
ATGAACCATTTCATTTCAAC+AGG + chr3_3:71234157-71234176 Msa0469390:intron 30.0%
TGAACCATTTCATTTCAACA+GGG + chr3_3:71234158-71234177 Msa0469390:intron 30.0%
!!! CATTTTAAAACAATCCAGCA+TGG - chr3_3:71234374-71234393 None:intergenic 30.0%
ATAAAACTACTGAAGAGAGT+TGG + chr3_3:71234434-71234453 Msa0469390:three_prime_UTR 30.0%
TAAAACTACTGAAGAGAGTT+GGG + chr3_3:71234435-71234454 Msa0469390:three_prime_UTR 30.0%
!! AGTTCTAAAACCTTAAAGCA+TGG - chr3_3:71234492-71234511 None:intergenic 30.0%
CAGCAGGCTAATAATATTTA+TGG + chr3_3:71234515-71234534 Msa0469390:three_prime_UTR 30.0%
! ACTGTCAAAAGTACACAGTT+GGG - chr3_3:71229799-71229818 None:intergenic 35.0%
! TACTGTCAAAAGTACACAGT+TGG - chr3_3:71229800-71229819 None:intergenic 35.0%
GTCTTGTCATAGTTGTAAAG+AGG - chr3_3:71230047-71230066 None:intergenic 35.0%
! ATTTTCTGTTCTATGGCGTT+AGG + chr3_3:71230171-71230190 Msa0469390:intron 35.0%
TTCTATGGCGTTAGGTTAAT+GGG + chr3_3:71230179-71230198 Msa0469390:intron 35.0%
!! AGAAGAGTTTGTTGATATGC+TGG + chr3_3:71230390-71230409 Msa0469390:CDS 35.0%
!! AGTTTGTTGATATGCTGGAT+GGG + chr3_3:71230395-71230414 Msa0469390:CDS 35.0%
TCCATGTGCTATGCAATTAA+GGG - chr3_3:71230987-71231006 None:intergenic 35.0%
ATCCATGTGCTATGCAATTA+AGG - chr3_3:71230988-71231007 None:intergenic 35.0%
! TTCCTCTACATTAGAAGCAT+CGG - chr3_3:71231130-71231149 None:intergenic 35.0%
GCATATATATTCCAGCAAAC+AGG + chr3_3:71231435-71231454 Msa0469390:CDS 35.0%
CAAAGACAGCAAAGTTTAAC+AGG - chr3_3:71231582-71231601 None:intergenic 35.0%
! TTAAACTTTGCTGTCTTTGC+AGG + chr3_3:71231583-71231602 Msa0469390:intron 35.0%
!! GAGGATGCTTTAAAATTCCA+GGG - chr3_3:71232010-71232029 None:intergenic 35.0%
!! TGAGGATGCTTTAAAATTCC+AGG - chr3_3:71232011-71232030 None:intergenic 35.0%
GAGTGTTATGTCATAACTAG+AGG + chr3_3:71232070-71232089 Msa0469390:intron 35.0%
! AGGCATTAAGTTGCATTTCA+TGG - chr3_3:71232114-71232133 None:intergenic 35.0%
AATTCCCATAAGCTCATGAT+TGG + chr3_3:71232152-71232171 Msa0469390:intron 35.0%
GCTGATTACTATGTTCTAGT+TGG + chr3_3:71232183-71232202 Msa0469390:intron 35.0%
GTTATACTGTGATATCATGC+AGG + chr3_3:71232313-71232332 Msa0469390:intron 35.0%
CAGTTACATACTTTCTGCAT+TGG + chr3_3:71232467-71232486 Msa0469390:CDS 35.0%
! TACTTTCTGCATTGGTATAG+AGG + chr3_3:71232475-71232494 Msa0469390:CDS 35.0%
!! ACAGCTCATTTTAACCATGA+GGG - chr3_3:71232512-71232531 None:intergenic 35.0%
!! TACAGCTCATTTTAACCATG+AGG - chr3_3:71232513-71232532 None:intergenic 35.0%
! ACTTAATTTTCCCCCATTCA+GGG + chr3_3:71232583-71232602 Msa0469390:intron 35.0%
ATAAAAATCTCGTCTGCTCA+AGG - chr3_3:71232719-71232738 None:intergenic 35.0%
! GATTTTTATTGCTAGCTCGA+AGG + chr3_3:71232730-71232749 Msa0469390:intron 35.0%
CAAATCATTGGGAGTGAAAA+TGG + chr3_3:71232886-71232905 Msa0469390:CDS 35.0%
GGTTCAGATGAAATATTTGG+AGG + chr3_3:71232923-71232942 Msa0469390:CDS 35.0%
AGGTTACCTGTATTTCCATA+AGG + chr3_3:71232943-71232962 Msa0469390:CDS 35.0%
! ATAAACGGGTAAAAGTACAC+AGG - chr3_3:71233083-71233102 None:intergenic 35.0%
!! AAGTTGATTTATTGGCTCTC+AGG - chr3_3:71233164-71233183 None:intergenic 35.0%
GAGAGCCAATAAATCAACTT+CGG + chr3_3:71233164-71233183 Msa0469390:CDS 35.0%
CAATAAATCAACTTCGGCTT+GGG + chr3_3:71233170-71233189 Msa0469390:CDS 35.0%
! AATAAATCAACTTCGGCTTG+GGG + chr3_3:71233171-71233190 Msa0469390:CDS 35.0%
AGAATTTATCAACACTGCCA+TGG + chr3_3:71233224-71233243 Msa0469390:CDS 35.0%
! TACAATACCATTTTCCACTC+CGG - chr3_3:71233258-71233277 None:intergenic 35.0%
CTATAGGCTGTCTTATGATT+GGG + chr3_3:71233329-71233348 Msa0469390:intron 35.0%
CAATGTTCAATCAACAATGC+AGG - chr3_3:71233358-71233377 None:intergenic 35.0%
TGAGAATCCATATTTGCCAA+AGG + chr3_3:71233651-71233670 Msa0469390:CDS 35.0%
GTTATTCAGTTCAATGTCAC+AGG - chr3_3:71233857-71233876 None:intergenic 35.0%
!! GTTTTCAGGGTAAACAAAGT+TGG - chr3_3:71233953-71233972 None:intergenic 35.0%
TCTCAAAAATTGTCCTGTAG+TGG - chr3_3:71233999-71234018 None:intergenic 35.0%
TGGTCAAGGTTATGATGAAA+AGG - chr3_3:71234075-71234094 None:intergenic 35.0%
AAAATAAAAGAGCCCGACAA+TGG + chr3_3:71234335-71234354 Msa0469390:CDS 35.0%
AAAACTACTGAAGAGAGTTG+GGG + chr3_3:71234436-71234455 Msa0469390:three_prime_UTR 35.0%
GAGTTAAACGGAGCTAAACA+AGG + chr3_3:71229743-71229762 Msa0469390:five_prime_UTR 40.0%
!! TCATCAACGTCTTGCTATTG+TGG + chr3_3:71230001-71230020 Msa0469390:CDS 40.0%
GATACGTACGGTGACAATAA+CGG - chr3_3:71230069-71230088 None:intergenic 40.0%
GTTCTATGGCGTTAGGTTAA+TGG + chr3_3:71230178-71230197 Msa0469390:intron 40.0%
TCTATGGCGTTAGGTTAATG+GGG + chr3_3:71230180-71230199 Msa0469390:intron 40.0%
!! GAGTTTGTTGATATGCTGGA+TGG + chr3_3:71230394-71230413 Msa0469390:CDS 40.0%
TGGCATTACCCCTCTTTATT+TGG + chr3_3:71230480-71230499 Msa0469390:CDS 40.0%
! GGCATTACCCCTCTTTATTT+GGG + chr3_3:71230481-71230500 Msa0469390:CDS 40.0%
! TTACCCCTCTTTATTTGGGT+TGG + chr3_3:71230485-71230504 Msa0469390:CDS 40.0%
! TACCCCTCTTTATTTGGGTT+GGG + chr3_3:71230486-71230505 Msa0469390:CDS 40.0%
!! CCAAAATGCATCTCTGGAAT+TGG - chr3_3:71230623-71230642 None:intergenic 40.0%
! CCAATTCCAGAGATGCATTT+TGG + chr3_3:71230620-71230639 Msa0469390:intron 40.0%
ACATGTCCAAAATGCATCTC+TGG - chr3_3:71230629-71230648 None:intergenic 40.0%
ACCCTTAATTGCATAGCACA+TGG + chr3_3:71230983-71231002 Msa0469390:intron 40.0%
TAATGCCTGTGTATGCTAGA+GGG - chr3_3:71231206-71231225 None:intergenic 40.0%
TTAATGCCTGTGTATGCTAG+AGG - chr3_3:71231207-71231226 None:intergenic 40.0%
! TTCGGCAGTTGCATGATTTT+AGG + chr3_3:71231236-71231255 Msa0469390:intron 40.0%
TTGCTGGAATATATATGCCC+TGG - chr3_3:71231433-71231452 None:intergenic 40.0%
TCTTTGCAGGAGGATTAAGA+AGG + chr3_3:71231596-71231615 Msa0469390:intron 40.0%
ATCAACACGCTATGATCCAA+CGG + chr3_3:71231654-71231673 Msa0469390:CDS 40.0%
TTAGAATGTCCAGTTCTGCT+TGG + chr3_3:71231747-71231766 Msa0469390:intron 40.0%
ATAACAACACCAAGCAGAAC+TGG - chr3_3:71231759-71231778 None:intergenic 40.0%
!! TGCTTGGTGTTGTTATGTAG+TGG + chr3_3:71231763-71231782 Msa0469390:intron 40.0%
GTGCTGTCAATTATGGAATG+CGG - chr3_3:71231937-71231956 None:intergenic 40.0%
CATTCCATAATTGACAGCAC+TGG + chr3_3:71231937-71231956 Msa0469390:intron 40.0%
AGAACCAGTGCTGTCAATTA+TGG - chr3_3:71231944-71231963 None:intergenic 40.0%
! AGACTATTTTCAACTCTCCC+TGG + chr3_3:71231990-71232009 Msa0469390:intron 40.0%
ATGATGACTGATGTACCCTT+TGG + chr3_3:71232350-71232369 Msa0469390:CDS 40.0%
TGCAGTGGCCAATAGATATT+TGG + chr3_3:71232412-71232431 Msa0469390:CDS 40.0%
! GACTTAATTTTCCCCCATTC+AGG + chr3_3:71232582-71232601 Msa0469390:intron 40.0%
GAACTGTGAAATGAAGTTCG+TGG - chr3_3:71232663-71232682 None:intergenic 40.0%
CGAACTTCATTTCACAGTTC+AGG + chr3_3:71232663-71232682 Msa0469390:CDS 40.0%
! AAAATGGTTCTGTCTGGAGA+AGG + chr3_3:71232902-71232921 Msa0469390:CDS 40.0%
TGATGAAGCTCTTCCTTGTT+AGG - chr3_3:71232971-71232990 None:intergenic 40.0%
GGGGATAAGCACAAGAATTA+TGG - chr3_3:71233018-71233037 None:intergenic 40.0%
! CCAAGCCGAAGTTGATTTAT+TGG - chr3_3:71233172-71233191 None:intergenic 40.0%
CCAATAAATCAACTTCGGCT+TGG + chr3_3:71233169-71233188 Msa0469390:CDS 40.0%
GCTATAGGCTGTCTTATGAT+TGG + chr3_3:71233328-71233347 Msa0469390:intron 40.0%
TGCTTGTTCGTATGTCTTGA+AGG + chr3_3:71233699-71233718 Msa0469390:intron 40.0%
! CAGTTGGATTGATGGTTTGA+AGG + chr3_3:71233803-71233822 Msa0469390:CDS 40.0%
GATCATGCTAACGAACAAGT+AGG + chr3_3:71233825-71233844 Msa0469390:intron 40.0%
!!! TTGTGGTAGGAGTGTTTTCA+GGG - chr3_3:71233966-71233985 None:intergenic 40.0%
!!! TTTGTGGTAGGAGTGTTTTC+AGG - chr3_3:71233967-71233986 None:intergenic 40.0%
AAACACTCCTACCACAAAAG+AGG + chr3_3:71233969-71233988 Msa0469390:CDS 40.0%
AACACTCCTACCACAAAAGA+GGG + chr3_3:71233970-71233989 Msa0469390:CDS 40.0%
TCATGCATAGTCAAGTGGTT+TGG - chr3_3:71234141-71234160 None:intergenic 40.0%
ATGGTTCATGCATAGTCAAG+TGG - chr3_3:71234146-71234165 None:intergenic 40.0%
AGCACCCTGTTGAAATGAAA+TGG - chr3_3:71234165-71234184 None:intergenic 40.0%
TACTGCAAAAGCTGTGGAAT+GGG + chr3_3:71234226-71234245 Msa0469390:CDS 40.0%
! TCTTTAGAGGGATCCATTGT+CGG - chr3_3:71234351-71234370 None:intergenic 40.0%
AATCCAGCATGGTCTTTAGA+GGG - chr3_3:71234363-71234382 None:intergenic 40.0%
CCTTAAAGCATGGTTGTACT+TGG - chr3_3:71234482-71234501 None:intergenic 40.0%
CCAAGTACAACCATGCTTTA+AGG + chr3_3:71234479-71234498 Msa0469390:three_prime_UTR 40.0%
TGCTAAGATTCCGCACATGA+CGG - chr3_3:71229859-71229878 None:intergenic 45.0%
TGCGGAATCTTAGCAGTGTT+GGG + chr3_3:71229864-71229883 Msa0469390:CDS 45.0%
! AATCTTAGCAGTGTTGGGTG+TGG + chr3_3:71229869-71229888 Msa0469390:CDS 45.0%
CAATGCAAACCACTCCAATC+AGG - chr3_3:71229960-71229979 None:intergenic 45.0%
! GAGGTTGATCTCCAGAAGTA+GGG - chr3_3:71230028-71230047 None:intergenic 45.0%
! AGAGGTTGATCTCCAGAAGT+AGG - chr3_3:71230029-71230048 None:intergenic 45.0%
ATTGCTGCTCGTGATGCTAT+TGG + chr3_3:71230460-71230479 Msa0469390:CDS 45.0%
!! ACCCCTCTTTATTTGGGTTG+GGG + chr3_3:71230487-71230506 Msa0469390:CDS 45.0%
!! CGTTTTAACCTCAACCTCGT+TGG + chr3_3:71230553-71230572 Msa0469390:intron 45.0%
TGCCGATGCTTCTAATGTAG+AGG + chr3_3:71231125-71231144 Msa0469390:intron 45.0%
AATGCCTGTGTATGCTAGAG+GGG - chr3_3:71231205-71231224 None:intergenic 45.0%
!! GGAAGGGCTGATTATTTTGC+AGG + chr3_3:71231340-71231359 Msa0469390:intron 45.0%
CTGGAATATATATGCCCTGG+AGG - chr3_3:71231430-71231449 None:intergenic 45.0%
! AACTTTGCTGTCTTTGCAGG+AGG + chr3_3:71231586-71231605 Msa0469390:intron 45.0%
TTGCAGGAGGATTAAGAAGG+TGG + chr3_3:71231599-71231618 Msa0469390:intron 45.0%
!! ATTTGCTCTGAGAACCATGG+TGG - chr3_3:71231631-71231650 None:intergenic 45.0%
!! GGAATTTGCTCTGAGAACCA+TGG - chr3_3:71231634-71231653 None:intergenic 45.0%
GTTGGATCATAGCGTGTTGA+TGG - chr3_3:71231655-71231674 None:intergenic 45.0%
GGAATAGCTAACCCTCTCAA+AGG - chr3_3:71231692-71231711 None:intergenic 45.0%
! GCTATGCCACTGTTTTGTAG+CGG + chr3_3:71231889-71231908 Msa0469390:intron 45.0%
CGAATTCCGCTACAAAACAG+TGG - chr3_3:71231898-71231917 None:intergenic 45.0%
! TCTGCATTGGTATAGAGGTC+TGG + chr3_3:71232480-71232499 Msa0469390:intron 45.0%
! TCTTTTGCGGCTCTCAAATC+CGG - chr3_3:71232613-71232632 None:intergenic 45.0%
CTGTGAAATGAAGTTCGTGG+TGG - chr3_3:71232660-71232679 None:intergenic 45.0%
CTCGTCTGCTCAAGGTAAAA+TGG - chr3_3:71232711-71232730 None:intergenic 45.0%
! GGAAGGTATAGATGCACTTG+AGG + chr3_3:71232784-71232803 Msa0469390:intron 45.0%
! GGAGTGAAAATGGTTCTGTC+TGG + chr3_3:71232896-71232915 Msa0469390:CDS 45.0%
TAGGCGCCTTATGGAAATAC+AGG - chr3_3:71232952-71232971 None:intergenic 45.0%
! TTTCCATAAGGCGCCTAACA+AGG + chr3_3:71232955-71232974 Msa0469390:CDS 45.0%
TATCGATCCGGAGTGGAAAA+TGG + chr3_3:71233248-71233267 Msa0469390:CDS 45.0%
ATCTCGTCATGCAGCATAAG+AGG + chr3_3:71233301-71233320 Msa0469390:intron 45.0%
AGCATAAGAGGCTGAGCTAT+AGG + chr3_3:71233313-71233332 Msa0469390:intron 45.0%
GCACATATTGTACAGGCAGA+AGG + chr3_3:71233755-71233774 Msa0469390:intron 45.0%
GTCGGATACAGTTGGATTGA+TGG + chr3_3:71233795-71233814 Msa0469390:CDS 45.0%
! TGGTATCCCTCTTTTGTGGT+AGG - chr3_3:71233979-71233998 None:intergenic 45.0%
! GTAGTGGTATCCCTCTTTTG+TGG - chr3_3:71233983-71234002 None:intergenic 45.0%
CAAAAGAGGGATACCACTAC+AGG + chr3_3:71233983-71234002 Msa0469390:CDS 45.0%
ATGCAGTACTGCAAAAGCTG+TGG + chr3_3:71234220-71234239 Msa0469390:CDS 45.0%
GTACTGCAAAAGCTGTGGAA+TGG + chr3_3:71234225-71234244 Msa0469390:CDS 45.0%
TGCAGCATGGTCCAAAAATC+TGG + chr3_3:71234250-71234269 Msa0469390:CDS 45.0%
TCCAAAAATCTGGACCCTTC+AGG + chr3_3:71234260-71234279 Msa0469390:CDS 45.0%
! ACCTGAAGGGTCCAGATTTT+TGG - chr3_3:71234264-71234283 None:intergenic 45.0%
TGTTCATGCAGCTGCATACA+AGG + chr3_3:71234298-71234317 Msa0469390:CDS 45.0%
! CTTTAGAGGGATCCATTGTC+GGG - chr3_3:71234350-71234369 None:intergenic 45.0%
CAATCCAGCATGGTCTTTAG+AGG - chr3_3:71234364-71234383 None:intergenic 45.0%
!!! AGGTTTTAGAACTTCGCAGC+AGG + chr3_3:71234499-71234518 Msa0469390:three_prime_UTR 45.0%
!! AATTTATTCAAAAAAAAAAA+GGG - chr3_3:71230953-71230972 None:intergenic 5.0%
!! TAATAATTACATAAAAATAT+GGG - chr3_3:71233038-71233057 None:intergenic 5.0%
!! ATAATAATTACATAAAAATA+TGG - chr3_3:71233039-71233058 None:intergenic 5.0%
GTGCGGAATCTTAGCAGTGT+TGG + chr3_3:71229863-71229882 Msa0469390:CDS 50.0%
GCATCATCGAATTGTCTCGC+AGG + chr3_3:71229919-71229938 Msa0469390:CDS 50.0%
TGCGACATAGAGGACCTGAT+TGG + chr3_3:71229943-71229962 Msa0469390:CDS 50.0%
CATAGAGGACCTGATTGGAG+TGG + chr3_3:71229948-71229967 Msa0469390:CDS 50.0%
! TAGCAAGACGTTGATGAGCG+AGG - chr3_3:71229998-71230017 None:intergenic 50.0%
GCTATTGTGGACCCTACTTC+TGG + chr3_3:71230014-71230033 Msa0469390:CDS 50.0%
GCCCCAACCCAAATAAAGAG+GGG - chr3_3:71230491-71230510 None:intergenic 50.0%
GGCCCCAACCCAAATAAAGA+GGG - chr3_3:71230492-71230511 None:intergenic 50.0%
TGGCCCCAACCCAAATAAAG+AGG - chr3_3:71230493-71230512 None:intergenic 50.0%
!! TATTTGGGTTGGGGCCATGA+TGG + chr3_3:71230496-71230515 Msa0469390:CDS 50.0%
GCAGCAACCACATACCATCA+TGG - chr3_3:71230513-71230532 None:intergenic 50.0%
CTTAGACACCAACGAGGTTG+AGG - chr3_3:71230564-71230583 None:intergenic 50.0%
ATGCCTGTGTATGCTAGAGG+GGG - chr3_3:71231204-71231223 None:intergenic 50.0%
GAAGGTGGTACAATCCACCA+TGG + chr3_3:71231614-71231633 Msa0469390:CDS 50.0%
! TGATCCAACGGTTTTGCGTG+AGG + chr3_3:71231666-71231685 Msa0469390:CDS 50.0%
! TTTTGCGTGAGGCCTTTGAG+AGG + chr3_3:71231677-71231696 Msa0469390:CDS 50.0%
! TTTGCGTGAGGCCTTTGAGA+GGG + chr3_3:71231678-71231697 Msa0469390:CDS 50.0%
CTGTGATATCATGCAGGCTG+TGG + chr3_3:71232319-71232338 Msa0469390:intron 50.0%
CCGGACAACAGAACACCAAA+GGG - chr3_3:71232368-71232387 None:intergenic 50.0%
!! CCCTTTGGTGTTCTGTTGTC+CGG + chr3_3:71232365-71232384 Msa0469390:CDS 50.0%
TCCGGACAACAGAACACCAA+AGG - chr3_3:71232369-71232388 None:intergenic 50.0%
!! TTTGGTGTTCTGTTGTCCGG+AGG + chr3_3:71232368-71232387 Msa0469390:CDS 50.0%
TAACTGTGATCCCCACTGAC+GGG - chr3_3:71232453-71232472 None:intergenic 50.0%
GTAACTGTGATCCCCACTGA+CGG - chr3_3:71232454-71232473 None:intergenic 50.0%
AGGTCTGGACTATTCCCTCA+TGG + chr3_3:71232495-71232514 Msa0469390:intron 50.0%
AAATCCGGAGAGCCCTGAAT+GGG - chr3_3:71232598-71232617 None:intergenic 50.0%
GGATTTGAGAGCCGCAAAAG+AGG + chr3_3:71232612-71232631 Msa0469390:CDS 50.0%
CTTCCTTGTTAGGCGCCTTA+TGG - chr3_3:71232961-71232980 None:intergenic 50.0%
!! AACTTCGGCTTGGGGTATAG+AGG + chr3_3:71233179-71233198 Msa0469390:CDS 50.0%
CACTGCCATGGATATCGATC+CGG + chr3_3:71233236-71233255 Msa0469390:CDS 50.0%
CAGAAGGAACAGTTCAGCGA+TGG + chr3_3:71233771-71233790 Msa0469390:CDS 50.0%
GAACAGTTCAGCGATGGTGT+CGG + chr3_3:71233777-71233796 Msa0469390:CDS 50.0%
CAGTACTGCATGCCACACTA+GGG - chr3_3:71234211-71234230 None:intergenic 50.0%
! GATCCCTCTAAAGACCATGC+TGG + chr3_3:71234357-71234376 Msa0469390:exon 50.0%
TTGTTGGCAGCCGTCATGTG+CGG + chr3_3:71229846-71229865 Msa0469390:exon 55.0%
TTCGATGATGCGAGCGCGTT+TGG - chr3_3:71229910-71229929 None:intergenic 55.0%
TCTCGCAGGTTGCGACATAG+AGG + chr3_3:71229933-71229952 Msa0469390:CDS 55.0%
GTTGGGGCCATGATGGTATG+TGG + chr3_3:71230503-71230522 Msa0469390:intron 55.0%
TGCCTGTGTATGCTAGAGGG+GGG - chr3_3:71231203-71231222 None:intergenic 55.0%
AAGGCCTCACGCAAAACCGT+TGG - chr3_3:71231673-71231692 None:intergenic 55.0%
TGTTCTGTTGTCCGGAGGAC+TGG + chr3_3:71232373-71232392 Msa0469390:CDS 55.0%
AAGTGACGAGTCCAGTCCTC+CGG - chr3_3:71232387-71232406 None:intergenic 55.0%
! CTCGTCACTTGTTGCTGCAG+TGG + chr3_3:71232397-71232416 Msa0469390:CDS 55.0%
ATACTGACACTGCCCGTCAG+TGG + chr3_3:71232438-71232457 Msa0469390:CDS 55.0%
TACTGACACTGCCCGTCAGT+GGG + chr3_3:71232439-71232458 Msa0469390:CDS 55.0%
AATCCGGAGAGCCCTGAATG+GGG - chr3_3:71232597-71232616 None:intergenic 55.0%
CAAATCCGGAGAGCCCTGAA+TGG - chr3_3:71232599-71232618 None:intergenic 55.0%
! AGAGGCACGTGTACCGTTCT+TGG + chr3_3:71233197-71233216 Msa0469390:CDS 55.0%
CCACTCCGGATCGATATCCA+TGG - chr3_3:71233244-71233263 None:intergenic 55.0%
CCATGGATATCGATCCGGAG+TGG + chr3_3:71233241-71233260 Msa0469390:CDS 55.0%
! GCGATGGTGTCGGATACAGT+TGG + chr3_3:71233787-71233806 Msa0469390:CDS 55.0%
TCAGCATTGCGTCTGTGACC+TGG - chr3_3:71233924-71233943 None:intergenic 55.0%
!! CATTTCAACAGGGTGCTGCC+AGG + chr3_3:71234168-71234187 Msa0469390:intron 55.0%
GCAGTACTGCATGCCACACT+AGG - chr3_3:71234212-71234231 None:intergenic 55.0%
CTGTGGAATGGGATGCAGCA+TGG + chr3_3:71234237-71234256 Msa0469390:CDS 55.0%
AGCTGCATGAACACCAAGCG+CGG - chr3_3:71234291-71234310 None:intergenic 55.0%
GAGCGGCTTAGACACCAACG+AGG - chr3_3:71230570-71230589 None:intergenic 60.0%
TCCCCCCCTCTAGCATACAC+AGG + chr3_3:71231198-71231217 Msa0469390:intron 60.0%
GCCTGTGTATGCTAGAGGGG+GGG - chr3_3:71231202-71231221 None:intergenic 60.0%
ACTGACACTGCCCGTCAGTG+GGG + chr3_3:71232440-71232459 Msa0469390:CDS 60.0%
TTCCCCCATTCAGGGCTCTC+CGG + chr3_3:71232591-71232610 Msa0469390:intron 60.0%
ATCCGGAGAGCCCTGAATGG+GGG - chr3_3:71232596-71232615 None:intergenic 60.0%
GCTGCCAGGTCAACAGTTCC+AGG + chr3_3:71234182-71234201 Msa0469390:CDS 60.0%
GCCAGGTCAACAGTTCCAGG+AGG + chr3_3:71234185-71234204 Msa0469390:CDS 60.0%
GCCTCCTGGAACTGTTGACC+TGG - chr3_3:71234189-71234208 None:intergenic 60.0%
AGTTCCAGGAGGCCCTAGTG+TGG + chr3_3:71234196-71234215 Msa0469390:CDS 60.0%
CATGCCACACTAGGGCCTCC+TGG - chr3_3:71234203-71234222 None:intergenic 65.0%
CAAGCGCGGCACGACCTGAA+GGG - chr3_3:71234277-71234296 None:intergenic 65.0%
CCAAGCGCGGCACGACCTGA+AGG - chr3_3:71234278-71234297 None:intergenic 70.0%
CCTTCAGGTCGTGCCGCGCT+TGG + chr3_3:71234275-71234294 Msa0469390:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71229741 71234600 71229741 ID=Msa0469390;Name=Msa0469390
chr3_3 mRNA 71229741 71234600 71229741 ID=Msa0469390-mRNA-1;Parent=Msa0469390;Name=Msa0469390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=120|1|1|1|1|1|13|233|570
chr3_3 exon 71229741 71230079 71229741 ID=Msa0469390-mRNA-1:exon:17470;Parent=Msa0469390-mRNA-1
chr3_3 exon 71230193 71230288 71230193 ID=Msa0469390-mRNA-1:exon:17471;Parent=Msa0469390-mRNA-1
chr3_3 exon 71230376 71230517 71230376 ID=Msa0469390-mRNA-1:exon:17472;Parent=Msa0469390-mRNA-1
chr3_3 exon 71231362 71231457 71231362 ID=Msa0469390-mRNA-1:exon:17473;Parent=Msa0469390-mRNA-1
chr3_3 exon 71231605 71231699 71231605 ID=Msa0469390-mRNA-1:exon:17474;Parent=Msa0469390-mRNA-1
chr3_3 exon 71232335 71232496 71232335 ID=Msa0469390-mRNA-1:exon:17475;Parent=Msa0469390-mRNA-1
chr3_3 exon 71232604 71232684 71232604 ID=Msa0469390-mRNA-1:exon:17476;Parent=Msa0469390-mRNA-1
chr3_3 exon 71232785 71233006 71232785 ID=Msa0469390-mRNA-1:exon:17477;Parent=Msa0469390-mRNA-1
chr3_3 exon 71233135 71233269 71233135 ID=Msa0469390-mRNA-1:exon:17478;Parent=Msa0469390-mRNA-1
chr3_3 exon 71233592 71233672 71233592 ID=Msa0469390-mRNA-1:exon:17479;Parent=Msa0469390-mRNA-1
chr3_3 exon 71233756 71233842 71233756 ID=Msa0469390-mRNA-1:exon:17480;Parent=Msa0469390-mRNA-1
chr3_3 exon 71233925 71234032 71233925 ID=Msa0469390-mRNA-1:exon:17481;Parent=Msa0469390-mRNA-1
chr3_3 exon 71234179 71234600 71234179 ID=Msa0469390-mRNA-1:exon:17482;Parent=Msa0469390-mRNA-1
chr3_3 five_prime_UTR 71229741 71229860 71229741 ID=Msa0469390-mRNA-1:five_prime_utr;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71229861 71230079 71229861 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71230193 71230288 71230193 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71230376 71230517 71230376 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71231362 71231457 71231362 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71231605 71231699 71231605 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71232335 71232496 71232335 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71232604 71232684 71232604 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71232785 71233006 71232785 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71233135 71233269 71233135 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71233592 71233672 71233592 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71233756 71233842 71233756 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71233925 71234032 71233925 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 CDS 71234179 71234367 71234179 ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3 three_prime_UTR 71234368 71234600 71234368 ID=Msa0469390-mRNA-1:three_prime_utr;Parent=Msa0469390-mRNA-1
Gene Sequence

>Msa0469390

ATGTGCGGAATCTTAGCAGTGTTGGGTGTGGTCGACAATTCTCAGTCCAAACGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGACATAGAGGACCTGATTGGAGTGGTTTGCATTGTCATCAAGATTGTTACCTCGCTCATCAACGTCTTGCTATTGTGGACCCTACTTCTGGAGATCAACCTCTTTACAACTATGACAAGACCGTTATTGTCACCGTTAATGGGGAGATATACAACCACAAAAAATTGAGACAGAAACTGAAATCTCATCAATTTCGAACTGGTAGTGATTGTGAAGTCATTGCTCATCTTTATGAAGAATATGGAGAAGAGTTTGTTGATATGCTGGATGGGATGTTCTCATTTGTGCTTCTTGATACTAGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGTTGGGGCCATGATGGATCAATATGGTTTGCGTCTGAAATGAAAGCGCTGATTGATGATTGTGAGCAATTTATATCTTTTCCTCCAGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTCTCAGAGCAAATTCCATCAACACGCTATGATCCAACGGTTTTGCGTGAGGCCTTTGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGTGTTCTGTTGTCCGGAGGACTGGACTCGTCACTTGTTGCTGCAGTGGCCAATAGATATTTGGCTGATACTGACACTGCCCGTCAGTGGGGATCACAGTTACATACTTTCTGCATTGGTATAGAGGGCTCTCCGGATTTGAGAGCCGCAAAAGAGGTAGCAAATTATCTTGGCACTTGCCACCACGAACTTCATTTCACAGTTCAGGAAGGTATAGATGCACTTGAGGAAGTCATTTACCATATTGAAACATATGATGTAACGACTGTCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAATCATTGGGAGTGAAAATGGTTCTGTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTCCATAAGGCGCCTAACAAGGAAGAGCTTCATCAAGAAACATGCCGAAAAATTAAAGCACTTCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCGGCTTGGGGTATAGAGGCACGTGTACCGTTCTTGGATAAAGAATTTATCAACACTGCCATGGATATCGATCCGGAGTGGAAAATGATAAAGCCTGATATTGAAAGGATAGAGAAATGGGTATTGCGCAATGCATTTGATGATGATGAGAATCCATATTTGCCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGCGATGGTGTCGGATACAGTTGGATTGATGGTTTGAAGGATCATGCTAACGAACAAGTCACAGACGCAATGCTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCTACCACAAAAGAGGGATACCACTACAGGACAATTTTTGAGAAGTTATTTCCAAAGGGTGCTGCCAGGTCAACAGTTCCAGGAGGCCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTGGACCCTTCAGGTCGTGCCGCGCTTGGTGTTCATGCAGCTGCATACAAGGATGCAGTAGATATCAAAATAAAAGAGCCCGACAATGGATCCCTCTAA

Protein sequence

>Msa0469390

MCGILAVLGVVDNSQSKRARIIELSRRLRHRGPDWSGLHCHQDCYLAHQRLAIVDPTSGDQPLYNYDKTVIVTVNGEIYNHKKLRQKLKSHQFRTGSDCEVIAHLYEEYGEEFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALIDDCEQFISFPPGHIYSSKQGGLRRWYNPPWFSEQIPSTRYDPTVLREAFERAVVKRMMTDVPFGVLLSGGLDSSLVAAVANRYLADTDTARQWGSQLHTFCIGIEGSPDLRAAKEVANYLGTCHHELHFTVQEGIDALEEVIYHIETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHQETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFINTAMDIDPEWKMIKPDIERIEKWVLRNAFDDDENPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANEQVTDAMLKHANFVYPENTPTTKEGYHYRTIFEKLFPKGAARSTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHAAAYKDAVDIKIKEPDNGSL*