AlfalfaGEDB | Msa0469390

M. sativa cultivar zhongmu-4 / Msa0469390

KEGG: K01953
GO: GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF13537.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469390	XP_003601953.1	98.596	570	8	0	1	570	1	570	0.0	1182

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469390	sp\|Q43011\|ASNS2_ORYSJ	84.946	558	84	0	1	558	1	558	0.0	1028

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469390	G7J3R9	98.596	570	8	0	1	570	1	570	0.0	1182

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017120	Msa0469390	0.815815	7.617963e-52	-8.615850e-47
Msa0017940	Msa0469390	0.837104	6.327166e-57	-8.615850e-47
Msa0018220	Msa0469390	0.832109	1.140165e-55	-8.615850e-47
Msa0027540	Msa0469390	0.816035	6.805244e-52	-8.615850e-47
Msa0030000	Msa0469390	0.804872	1.753733e-49	-8.615850e-47
Msa0030730	Msa0469390	0.856921	2.320180e-62	-8.615850e-47
Msa0031720	Msa0469390	0.834786	2.450843e-56	-8.615850e-47
Msa0032120	Msa0469390	0.858854	6.189382e-63	-8.615850e-47
Msa0032400	Msa0469390	0.844922	5.600063e-59	-8.615850e-47
Msa0044220	Msa0469390	0.800535	1.377237e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469390	MtrunA17_Chr3g0123991	98.596	570	8	0	1	570	1	570	0.0	1182
Msa0469390	MtrunA17_Chr5g0430381	77.878	556	123	0	1	556	1	556	0.0	938
Msa0469390	MtrunA17_Chr3g0105311	74.517	569	142	2	1	566	1	569	0.0	913
Msa0469390	MtrunA17_Chr5g0429171	77.083	48	11	0	509	556	30	77	7.74e-19	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0469390	AT5G10240.1	85.199	554	82	0	1	554	1	554	1021
Msa0469390	AT5G65010.1	85.455	550	80	0	1	550	1	550	1018
Msa0469390	AT5G65010.2	85.299	551	80	1	1	550	1	551	1015
Msa0469390	AT5G10240.2	84.657	554	84	1	1	554	1	553	1010
Msa0469390	AT3G47340.1	75.221	565	139	1	1	565	1	564	934
Msa0469390	AT3G47340.2	76.378	508	120	0	1	508	1	508	856
Msa0469390	AT3G47340.3	77.218	417	95	0	1	417	1	417	714
Msa0469390	AT3G47340.4	77.483	302	68	0	116	417	1	302	520

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Find 154 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTACTGAAGAGAGTTG+GGG	0.650442	3_3:+71234436	Msa0469390:three_prime_UTR
AAAATAAAAGAGCCCGACAA+TGG	0.557915	3_3:+71234335	Msa0469390:CDS
AAAATGGTTCTGTCTGGAGA+AGG	0.606208	3_3:+71232902	Msa0469390:CDS
AAAATGTATATATCTGACTT+CGG	0.479389	3_3:+71234388	Msa0469390:three_prime_UTR
AAACACTCCTACCACAAAAG+AGG	0.557038	3_3:+71233969	Msa0469390:CDS
AAAGAGGTAGCAAATTATCT+TGG	0.479356	3_3:+71232628	Msa0469390:CDS
AAATCTCATCAATTTCGAAC+TGG	0.470336	3_3:+71230238	Msa0469390:CDS
AAATGTATATATCTGACTTC+GGG	0.353875	3_3:+71234389	Msa0469390:three_prime_UTR
AACACTCCTACCACAAAAGA+GGG	0.564176	3_3:+71233970	Msa0469390:CDS
AACTTCGGCTTGGGGTATAG+AGG	0.510802	3_3:+71233179	Msa0469390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAGAAGATAAGATACGTA+CGG	-	chr3_3:71230081-71230100	None:intergenic	30.0%
AAATCTCATCAATTTCGAAC+TGG	+	chr3_3:71230238-71230257	Msa0469390:CDS	30.0%
AATAAATGGTTCAATTCGAG+CGG	-	chr3_3:71230587-71230606	None:intergenic	30.0%
AATCATCTGACAATCACAAT+TGG	-	chr3_3:71230725-71230744	None:intergenic	30.0%
TGTTTATACAGATATGTAGC+AGG	-	chr3_3:71231083-71231102	None:intergenic	30.0%
CATATATATTCCAGCAAACA+GGG	+	chr3_3:71231436-71231455	Msa0469390:CDS	30.0%
AGTAGAAGGAGAAAAACAAA+TGG	-	chr3_3:71231519-71231538	None:intergenic	30.0%
TGTAAGTGTGTATCTTATCT+TGG	-	chr3_3:71231556-71231575	None:intergenic	30.0%
AATAATTCAATGGATGAGAC+AGG	-	chr3_3:71231713-71231732	None:intergenic	30.0%
CACAAAATGTTGTCAAATAG+CGG	+	chr3_3:71231857-71231876	Msa0469390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	71229741	71234600	71229741	ID=Msa0469390;Name=Msa0469390
chr3_3	mRNA	71229741	71234600	71229741	ID=Msa0469390-mRNA-1;Parent=Msa0469390;Name=Msa0469390-mRNA-1;_AED=0.11;_eAED=0.11;_QI=120\|1\|1\|1\|1\|1\|13\|233\|570
chr3_3	exon	71229741	71230079	71229741	ID=Msa0469390-mRNA-1:exon:17470;Parent=Msa0469390-mRNA-1
chr3_3	exon	71230193	71230288	71230193	ID=Msa0469390-mRNA-1:exon:17471;Parent=Msa0469390-mRNA-1
chr3_3	exon	71230376	71230517	71230376	ID=Msa0469390-mRNA-1:exon:17472;Parent=Msa0469390-mRNA-1
chr3_3	exon	71231362	71231457	71231362	ID=Msa0469390-mRNA-1:exon:17473;Parent=Msa0469390-mRNA-1
chr3_3	exon	71231605	71231699	71231605	ID=Msa0469390-mRNA-1:exon:17474;Parent=Msa0469390-mRNA-1
chr3_3	exon	71232335	71232496	71232335	ID=Msa0469390-mRNA-1:exon:17475;Parent=Msa0469390-mRNA-1
chr3_3	exon	71232604	71232684	71232604	ID=Msa0469390-mRNA-1:exon:17476;Parent=Msa0469390-mRNA-1
chr3_3	exon	71232785	71233006	71232785	ID=Msa0469390-mRNA-1:exon:17477;Parent=Msa0469390-mRNA-1
chr3_3	exon	71233135	71233269	71233135	ID=Msa0469390-mRNA-1:exon:17478;Parent=Msa0469390-mRNA-1
chr3_3	exon	71233592	71233672	71233592	ID=Msa0469390-mRNA-1:exon:17479;Parent=Msa0469390-mRNA-1
chr3_3	exon	71233756	71233842	71233756	ID=Msa0469390-mRNA-1:exon:17480;Parent=Msa0469390-mRNA-1
chr3_3	exon	71233925	71234032	71233925	ID=Msa0469390-mRNA-1:exon:17481;Parent=Msa0469390-mRNA-1
chr3_3	exon	71234179	71234600	71234179	ID=Msa0469390-mRNA-1:exon:17482;Parent=Msa0469390-mRNA-1
chr3_3	five_prime_UTR	71229741	71229860	71229741	ID=Msa0469390-mRNA-1:five_prime_utr;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71229861	71230079	71229861	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71230193	71230288	71230193	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71230376	71230517	71230376	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71231362	71231457	71231362	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71231605	71231699	71231605	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71232335	71232496	71232335	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71232604	71232684	71232604	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71232785	71233006	71232785	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71233135	71233269	71233135	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71233592	71233672	71233592	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71233756	71233842	71233756	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71233925	71234032	71233925	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	CDS	71234179	71234367	71234179	ID=Msa0469390-mRNA-1:cds;Parent=Msa0469390-mRNA-1
chr3_3	three_prime_UTR	71234368	71234600	71234368	ID=Msa0469390-mRNA-1:three_prime_utr;Parent=Msa0469390-mRNA-1

Gene Sequence

>Msa0469390

ATGTGCGGAATCTTAGCAGTGTTGGGTGTGGTCGACAATTCTCAGTCCAAACGCGCTCGCATCATCGAATTGTCTCGCAGGTTGCGACATAGAGGACCTGATTGGAGTGGTTTGCATTGTCATCAAGATTGTTACCTCGCTCATCAACGTCTTGCTATTGTGGACCCTACTTCTGGAGATCAACCTCTTTACAACTATGACAAGACCGTTATTGTCACCGTTAATGGGGAGATATACAACCACAAAAAATTGAGACAGAAACTGAAATCTCATCAATTTCGAACTGGTAGTGATTGTGAAGTCATTGCTCATCTTTATGAAGAATATGGAGAAGAGTTTGTTGATATGCTGGATGGGATGTTCTCATTTGTGCTTCTTGATACTAGAGATAAAAGTTTTATTGCTGCTCGTGATGCTATTGGCATTACCCCTCTTTATTTGGGTTGGGGCCATGATGGATCAATATGGTTTGCGTCTGAAATGAAAGCGCTGATTGATGATTGTGAGCAATTTATATCTTTTCCTCCAGGGCATATATATTCCAGCAAACAGGGAGGATTAAGAAGGTGGTACAATCCACCATGGTTCTCAGAGCAAATTCCATCAACACGCTATGATCCAACGGTTTTGCGTGAGGCCTTTGAGAGGGCTGTGGTTAAGAGAATGATGACTGATGTACCCTTTGGTGTTCTGTTGTCCGGAGGACTGGACTCGTCACTTGTTGCTGCAGTGGCCAATAGATATTTGGCTGATACTGACACTGCCCGTCAGTGGGGATCACAGTTACATACTTTCTGCATTGGTATAGAGGGCTCTCCGGATTTGAGAGCCGCAAAAGAGGTAGCAAATTATCTTGGCACTTGCCACCACGAACTTCATTTCACAGTTCAGGAAGGTATAGATGCACTTGAGGAAGTCATTTACCATATTGAAACATATGATGTAACGACTGTCAGAGCAAGTACTCCAATGTTTCTTATGTCCAGAAAAATCAAATCATTGGGAGTGAAAATGGTTCTGTCTGGAGAAGGTTCAGATGAAATATTTGGAGGTTACCTGTATTTCCATAAGGCGCCTAACAAGGAAGAGCTTCATCAAGAAACATGCCGAAAAATTAAAGCACTTCATCTTTATGACTGCCTGAGAGCCAATAAATCAACTTCGGCTTGGGGTATAGAGGCACGTGTACCGTTCTTGGATAAAGAATTTATCAACACTGCCATGGATATCGATCCGGAGTGGAAAATGATAAAGCCTGATATTGAAAGGATAGAGAAATGGGTATTGCGCAATGCATTTGATGATGATGAGAATCCATATTTGCCAAAGCACATATTGTACAGGCAGAAGGAACAGTTCAGCGATGGTGTCGGATACAGTTGGATTGATGGTTTGAAGGATCATGCTAACGAACAAGTCACAGACGCAATGCTGAAGCATGCCAACTTTGTTTACCCTGAAAACACTCCTACCACAAAAGAGGGATACCACTACAGGACAATTTTTGAGAAGTTATTTCCAAAGGGTGCTGCCAGGTCAACAGTTCCAGGAGGCCCTAGTGTGGCATGCAGTACTGCAAAAGCTGTGGAATGGGATGCAGCATGGTCCAAAAATCTGGACCCTTCAGGTCGTGCCGCGCTTGGTGTTCATGCAGCTGCATACAAGGATGCAGTAGATATCAAAATAAAAGAGCCCGACAATGGATCCCTCTAA

Protein sequence

>Msa0469390

MCGILAVLGVVDNSQSKRARIIELSRRLRHRGPDWSGLHCHQDCYLAHQRLAIVDPTSGDQPLYNYDKTVIVTVNGEIYNHKKLRQKLKSHQFRTGSDCEVIAHLYEEYGEEFVDMLDGMFSFVLLDTRDKSFIAARDAIGITPLYLGWGHDGSIWFASEMKALIDDCEQFISFPPGHIYSSKQGGLRRWYNPPWFSEQIPSTRYDPTVLREAFERAVVKRMMTDVPFGVLLSGGLDSSLVAAVANRYLADTDTARQWGSQLHTFCIGIEGSPDLRAAKEVANYLGTCHHELHFTVQEGIDALEEVIYHIETYDVTTVRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHQETCRKIKALHLYDCLRANKSTSAWGIEARVPFLDKEFINTAMDIDPEWKMIKPDIERIEKWVLRNAFDDDENPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANEQVTDAMLKHANFVYPENTPTTKEGYHYRTIFEKLFPKGAARSTVPGGPSVACSTAKAVEWDAAWSKNLDPSGRAALGVHAAAYKDAVDIKIKEPDNGSL*