Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470700 | XP_013461326.1 | 98.721 | 391 | 5 | 0 | 1 | 391 | 1 | 391 | 0.0 | 799 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470700 | sp|A5AEM3|THS4_VITVI | 74.359 | 390 | 100 | 0 | 1 | 390 | 1 | 390 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470700 | A0A072V123 | 98.721 | 391 | 5 | 0 | 1 | 391 | 1 | 391 | 0.0 | 799 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107830 | Msa0470700 | 0.835548 | 1.574262e-56 | -8.615850e-47 |
| Msa0164350 | Msa0470700 | 0.808199 | 3.482630e-50 | -8.615850e-47 |
| Msa0238330 | Msa0470700 | 0.809588 | 1.757094e-50 | -8.615850e-47 |
| Msa0390200 | Msa0470700 | 0.825911 | 3.620608e-54 | -8.615850e-47 |
| Msa0444340 | Msa0470700 | -0.800735 | 1.253703e-48 | -8.615850e-47 |
| Msa0470700 | Msa0489370 | 0.802949 | 4.401661e-49 | -8.615850e-47 |
| Msa0470700 | Msa0531800 | 0.802483 | 5.492420e-49 | -8.615850e-47 |
| Msa0470700 | Msa0544780 | -0.807653 | 4.550120e-50 | -8.615850e-47 |
| Msa0470700 | Msa0666910 | 0.801571 | 8.457414e-49 | -8.615850e-47 |
| Msa0470700 | Msa0679270 | -0.807578 | 4.721047e-50 | -8.615850e-47 |
| Msa0470700 | Msa0728520 | 0.807804 | 4.226870e-50 | -8.615850e-47 |
| Msa0470700 | Msa0776540 | 0.807972 | 3.893547e-50 | -8.615850e-47 |
| Msa0470700 | Msa0886370 | 0.813180 | 2.916170e-51 | -8.615850e-47 |
| Msa0470700 | Msa0910590 | 0.829777 | 4.256355e-55 | -8.615850e-47 |
| Msa0470700 | Msa0913500 | 0.818893 | 1.545265e-52 | -8.615850e-47 |
| Msa0470700 | Msa0948430 | 0.829204 | 5.865773e-55 | -8.615850e-47 |
| Msa0470700 | Msa0987550 | 0.818036 | 2.416923e-52 | -8.615850e-47 |
| Msa0470700 | Msa1040330 | 0.817167 | 3.793941e-52 | -8.615850e-47 |
| Msa0470700 | Msa1083100 | 0.807130 | 5.872962e-50 | -8.615850e-47 |
| Msa0470700 | Msa1165860 | 0.802691 | 4.973983e-49 | -8.615850e-47 |
| Msa0470700 | Msa1349420 | 0.801383 | 9.241123e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470700 | MtrunA17_Chr3g0125351 | 98.721 | 391 | 5 | 0 | 1 | 391 | 1 | 391 | 0.0 | 799 |
| Msa0470700 | MtrunA17_Chr7g0252331 | 70.180 | 389 | 116 | 0 | 1 | 389 | 1 | 389 | 0.0 | 604 |
| Msa0470700 | MtrunA17_Chr3g0121531 | 70.207 | 386 | 115 | 0 | 1 | 386 | 1 | 386 | 0.0 | 594 |
| Msa0470700 | MtrunA17_Chr3g0121541 | 68.041 | 388 | 124 | 0 | 1 | 388 | 1 | 388 | 0.0 | 580 |
| Msa0470700 | MtrunA17_Chr5g0395501 | 66.067 | 389 | 132 | 0 | 1 | 389 | 50 | 438 | 0.0 | 575 |
| Msa0470700 | MtrunA17_Chr5g0395521 | 65.810 | 389 | 133 | 0 | 1 | 389 | 1 | 389 | 0.0 | 574 |
| Msa0470700 | MtrunA17_Chr7g0220201 | 65.810 | 389 | 133 | 0 | 1 | 389 | 1 | 389 | 0.0 | 572 |
| Msa0470700 | MtrunA17_Chr7g0220161 | 65.810 | 389 | 133 | 0 | 1 | 389 | 1 | 389 | 0.0 | 572 |
| Msa0470700 | MtrunA17_Chr7g0220211 | 65.553 | 389 | 134 | 0 | 1 | 389 | 1 | 389 | 0.0 | 571 |
| Msa0470700 | MtrunA17_Chr1g0201381 | 65.553 | 389 | 134 | 0 | 1 | 389 | 1 | 389 | 0.0 | 570 |
| Msa0470700 | MtrunA17_Chr7g0220171 | 65.810 | 389 | 133 | 0 | 1 | 389 | 62 | 450 | 0.0 | 570 |
| Msa0470700 | MtrunA17_Chr1g0201371 | 65.553 | 389 | 134 | 0 | 1 | 389 | 1 | 389 | 0.0 | 570 |
| Msa0470700 | MtrunA17_Chr5g0395561 | 65.296 | 389 | 135 | 0 | 1 | 389 | 1 | 389 | 0.0 | 568 |
| Msa0470700 | MtrunA17_Chr7g0220181 | 65.296 | 389 | 135 | 0 | 1 | 389 | 1 | 389 | 0.0 | 568 |
| Msa0470700 | MtrunA17_Chr1g0201421 | 65.296 | 389 | 135 | 0 | 1 | 389 | 1 | 389 | 0.0 | 567 |
| Msa0470700 | MtrunA17_Chr5g0395591 | 65.039 | 389 | 136 | 0 | 1 | 389 | 1 | 389 | 0.0 | 566 |
| Msa0470700 | MtrunA17_Chr1g0201391 | 65.039 | 389 | 136 | 0 | 1 | 389 | 73 | 461 | 0.0 | 564 |
| Msa0470700 | MtrunA17_Chr2g0307731 | 65.553 | 389 | 134 | 0 | 1 | 389 | 1 | 389 | 0.0 | 560 |
| Msa0470700 | MtrunA17_Chr3g0123291 | 64.249 | 386 | 138 | 0 | 1 | 386 | 1 | 386 | 0.0 | 543 |
| Msa0470700 | MtrunA17_Chr7g0272771 | 66.445 | 301 | 101 | 0 | 89 | 389 | 3 | 303 | 2.97e-157 | 444 |
| Msa0470700 | MtrunA17_Chr5g0395581 | 62.270 | 326 | 123 | 0 | 64 | 389 | 1 | 326 | 2.40e-155 | 441 |
| Msa0470700 | MtrunA17_Chr8g0378211 | 59.932 | 292 | 82 | 2 | 70 | 361 | 1 | 257 | 1.08e-124 | 360 |
| Msa0470700 | MtrunA17_Chr3g0125341 | 46.649 | 388 | 193 | 7 | 10 | 386 | 2 | 386 | 2.29e-123 | 362 |
| Msa0470700 | MtrunA17_Chr4g0038581 | 40.160 | 376 | 216 | 4 | 11 | 382 | 13 | 383 | 1.04e-96 | 294 |
| Msa0470700 | MtrunA17_Chr5g0395601 | 62.264 | 212 | 80 | 0 | 70 | 281 | 1 | 212 | 3.20e-96 | 286 |
| Msa0470700 | MtrunA17_Chr4g0040421 | 38.710 | 372 | 221 | 2 | 15 | 386 | 24 | 388 | 1.16e-94 | 288 |
| Msa0470700 | MtrunA17_Chr5g0395551 | 62.500 | 184 | 69 | 0 | 206 | 389 | 1 | 184 | 1.10e-82 | 250 |
| Msa0470700 | MtrunA17_Chr5g0395571 | 61.667 | 60 | 23 | 0 | 1 | 60 | 1 | 60 | 1.19e-19 | 82.0 |
| Msa0470700 | MtrunA17_Chr5g0395531 | 60.377 | 53 | 21 | 0 | 64 | 116 | 1 | 53 | 5.35e-17 | 74.3 |
| Msa0470700 | MtrunA17_Chr5g0395541 | 72.500 | 40 | 11 | 0 | 133 | 172 | 2 | 41 | 1.67e-15 | 70.1 |
| Msa0470700 | MtrunA17_Chr5g0395611 | 69.048 | 42 | 13 | 0 | 328 | 369 | 2 | 43 | 1.27e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0470700 | AT5G13930.1 | 69.792 | 384 | 115 | 1 | 4 | 386 | 9 | 392 | 0.0 | 587 |
| Msa0470700 | AT4G34850.1 | 39.164 | 383 | 229 | 3 | 9 | 389 | 12 | 392 | 3.81e-98 | 298 |
| Msa0470700 | AT4G00040.1 | 38.667 | 375 | 222 | 4 | 14 | 386 | 16 | 384 | 3.51e-93 | 285 |
| Msa0470700 | AT1G02050.1 | 39.305 | 374 | 219 | 4 | 15 | 386 | 24 | 391 | 4.12e-89 | 275 |
| Msa0470700 | AT4G34850.2 | 39.062 | 320 | 192 | 2 | 72 | 389 | 1 | 319 | 2.70e-81 | 252 |
Find 82 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGTTGGGGTGTTCTTTC+AGG | 0.147202 | 3_3:+72900099 | None:intergenic |
| CTGATTGGAATTCTTTGTTT+TGG | 0.233393 | 3_3:-72898833 | Msa0470700:CDS |
| CAACCGGTGAAGGACTAAAA+TGG | 0.237482 | 3_3:-72898632 | Msa0470700:CDS |
| AGATGAGTTATCTCTGATTT+TGG | 0.243050 | 3_3:+72899969 | None:intergenic |
| GGCTGGACCACGAGCTCTTT+GGG | 0.266908 | 3_3:+72900941 | None:intergenic |
| TCCTTTATTTCATCTTGTTT+CGG | 0.276839 | 3_3:-72899625 | Msa0470700:CDS |
| ATCTAAATCCATCCACTAAA+AGG | 0.277780 | 3_3:-72899881 | Msa0470700:CDS |
| TCAATCCTCTTAATTATTGC+AGG | 0.295802 | 3_3:+72898792 | None:intergenic |
| ATTATTCTCAGCTAGATCTT+TGG | 0.297192 | 3_3:+72899806 | None:intergenic |
| AAAATTGTACCTTCAGAGTT+TGG | 0.303132 | 3_3:+72899585 | None:intergenic |
| TGCTTGTGTGATATTTATAT+TGG | 0.311989 | 3_3:-72898694 | Msa0470700:CDS |
| AAACACTTGGATTCGTTAGT+TGG | 0.343024 | 3_3:-72899717 | Msa0470700:CDS |
| TGGCTGGACCACGAGCTCTT+TGG | 0.344653 | 3_3:+72900940 | None:intergenic |
| TGGGATGAGAAGAAGGTCTA+TGG | 0.353322 | 3_3:-72898670 | Msa0470700:CDS |
| TTGAGTCATGTGTTCGCTTT+TGG | 0.354978 | 3_3:+72900839 | None:intergenic |
| GATAATGTTCCAAGTTTGAT+TGG | 0.356163 | 3_3:-72898906 | Msa0470700:CDS |
| CTTTCAGGATTTCTTCAGTT+AGG | 0.362202 | 3_3:+72900114 | None:intergenic |
| TGCAGTACCAATGGCTAGTA+TGG | 0.370012 | 3_3:+72900917 | None:intergenic |
| CAGTAAAATGGCATACTTAG+AGG | 0.380073 | 3_3:-72900976 | None:intergenic |
| GAGAAGAAGGTCTATGGAAG+AGG | 0.385503 | 3_3:-72898664 | Msa0470700:CDS |
| AACCGGTGAAGGACTAAAAT+GGG | 0.386445 | 3_3:-72898631 | Msa0470700:CDS |
| ACCCATTGGGAATTACTGAT+TGG | 0.389300 | 3_3:-72898848 | Msa0470700:CDS |
| GCCGAAACAAGATGAAATAA+AGG | 0.403766 | 3_3:+72899624 | None:intergenic |
| TCTTCGTAAGTTGATATGTT+GGG | 0.407727 | 3_3:+72900086 | None:intergenic |
| ATTAAAAGCCCTAAAAGAAT+GGG | 0.410029 | 3_3:-72899997 | Msa0470700:CDS |
| CTTACATATACGCTTCAGTT+TGG | 0.424477 | 3_3:+72900809 | None:intergenic |
| TTCTTCGTAAGTTGATATGT+TGG | 0.438007 | 3_3:+72900085 | None:intergenic |
| CATTAAAAGCCCTAAAAGAA+TGG | 0.447370 | 3_3:-72899998 | Msa0470700:CDS |
| GGACGTTCAAGTGTTGTGTC+TGG | 0.454476 | 3_3:+72899645 | None:intergenic |
| AGAAGAAGGTCTATGGAAGA+GGG | 0.466093 | 3_3:-72898663 | Msa0470700:CDS |
| TTAATTATTGCAGGACCACC+AGG | 0.471368 | 3_3:+72898801 | None:intergenic |
| TATGTCTTGGCGTACGTTGA+GGG | 0.472735 | 3_3:+72900058 | None:intergenic |
| TATTGGATGGGATGAGAAGA+AGG | 0.475148 | 3_3:-72898677 | Msa0470700:CDS |
| AATTAAGAGGATTGAAGAAA+CGG | 0.479123 | 3_3:-72898784 | Msa0470700:CDS |
| TACCACCAAGGTTGTTATGC+TGG | 0.487367 | 3_3:-72899849 | Msa0470700:CDS |
| AAGAGGATTGAAGAAACGGT+TGG | 0.495072 | 3_3:-72898780 | Msa0470700:CDS |
| GTGTGATATTTATATTGGAT+GGG | 0.501361 | 3_3:-72898689 | Msa0470700:CDS |
| ATATTCTCACCAATCAAACT+TGG | 0.503125 | 3_3:+72898897 | None:intergenic |
| GATTGGTAAATGCAATTGAC+TGG | 0.503481 | 3_3:+72900891 | None:intergenic |
| CTTCTTCAACTAATATGTCT+TGG | 0.506389 | 3_3:+72900045 | None:intergenic |
| TCCAATCAGTAATTCCCAAT+GGG | 0.508827 | 3_3:+72898847 | None:intergenic |
| TGTGTGATATTTATATTGGA+TGG | 0.508830 | 3_3:-72898690 | Msa0470700:CDS |
| GAAGAGGGGAAAACAACAAC+CGG | 0.513774 | 3_3:-72898648 | Msa0470700:CDS |
| GATCTAGCTGAGAATAATGT+TGG | 0.522501 | 3_3:-72899801 | Msa0470700:CDS |
| CTTCGTAAGTTGATATGTTG+GGG | 0.523491 | 3_3:+72900087 | None:intergenic |
| AATAATCAGTAAAATCAGAT+TGG | 0.525517 | 3_3:+72900874 | None:intergenic |
| ATCTTTGGCAAGACGAAGAA+CGG | 0.525822 | 3_3:+72899821 | None:intergenic |
| ATGGTTTCCATGGTCAAGCC+AGG | 0.528547 | 3_3:+72898588 | None:intergenic |
| TTAGTGAACATGGTCTATGT+TGG | 0.543089 | 3_3:+72898551 | None:intergenic |
| GTTGAAGAAGTGCCAAAGCT+AGG | 0.544378 | 3_3:-72900032 | Msa0470700:CDS |
| ATATGTCTTGGCGTACGTTG+AGG | 0.545213 | 3_3:+72900057 | None:intergenic |
| ACTTCCGGAGTTGACATGCC+TGG | 0.548136 | 3_3:-72899933 | Msa0470700:CDS |
| ATGCAAAGCAATGGTTTCCA+TGG | 0.560009 | 3_3:+72898578 | None:intergenic |
| AGTAAAATGGCATACTTAGA+GGG | 0.565242 | 3_3:-72900975 | None:intergenic |
| CCAATGGCTAGTATGGTGGC+TGG | 0.566665 | 3_3:+72900924 | None:intergenic |
| TGAAGGACACTTGCGTGAGG+TGG | 0.567329 | 3_3:-72898949 | Msa0470700:CDS |
| AGCACCAGGCATGTCAACTC+CGG | 0.569943 | 3_3:+72899929 | None:intergenic |
| TCTTGGCGTACGTTGAGGGA+TGG | 0.570631 | 3_3:+72900062 | None:intergenic |
| GAAGAAGGTCTATGGAAGAG+GGG | 0.574893 | 3_3:-72898662 | Msa0470700:CDS |
| CACCAGCATAACAACCTTGG+TGG | 0.575612 | 3_3:+72899847 | None:intergenic |
| GTGGTCCTGCAATAATTAAG+AGG | 0.577617 | 3_3:-72898797 | Msa0470700:CDS |
| GGGAAAACAACAACCGGTGA+AGG | 0.579516 | 3_3:-72898642 | Msa0470700:CDS |
| TTCCAATCAGTAATTCCCAA+TGG | 0.580607 | 3_3:+72898846 | None:intergenic |
| GACTGGAGTTGCAGTACCAA+TGG | 0.581736 | 3_3:+72900908 | None:intergenic |
| GAAGGACACTTGCGTGAGGT+GGG | 0.582214 | 3_3:-72898948 | Msa0470700:CDS |
| GGTGCTTCATCTGTGATCGT+TGG | 0.587633 | 3_3:-72899675 | Msa0470700:CDS |
| ATTTGGTCCTGGCTTGACCA+TGG | 0.593007 | 3_3:-72898595 | Msa0470700:CDS |
| ATGAGTTGATAATCAGCACC+AGG | 0.598022 | 3_3:+72899915 | None:intergenic |
| CCAGCCACCATACTAGCCAT+TGG | 0.600696 | 3_3:-72900924 | Msa0470700:CDS |
| TTCCACCAGCATAACAACCT+TGG | 0.602278 | 3_3:+72899844 | None:intergenic |
| GTTGGCGCTATGCAAAGCAA+TGG | 0.612636 | 3_3:+72898569 | None:intergenic |
| ACGATTCTACCAAACTCTGA+AGG | 0.616163 | 3_3:-72899594 | Msa0470700:intron |
| CACCAAGGTTGTTATGCTGG+TGG | 0.646872 | 3_3:-72899846 | Msa0470700:CDS |
| CGAACACATGACTCAACTCA+AGG | 0.651748 | 3_3:-72900832 | Msa0470700:CDS |
| AGAGAGTCCCAAAGAGCTCG+TGG | 0.660715 | 3_3:-72900948 | Msa0470700:CDS |
| TAATTATTGCAGGACCACCA+GGG | 0.666521 | 3_3:+72898802 | None:intergenic |
| TTAAAAGCCCTAAAAGAATG+GGG | 0.668431 | 3_3:-72899996 | Msa0470700:CDS |
| TTATTTCAGAACACACAACA+AGG | 0.673372 | 3_3:+72899769 | None:intergenic |
| AGTACCAATGGCTAGTATGG+TGG | 0.674401 | 3_3:+72900920 | None:intergenic |
| AGGTTCATGTTATACCACCA+AGG | 0.690009 | 3_3:-72899861 | Msa0470700:CDS |
| ACCGGTGAAGGACTAAAATG+GGG | 0.697537 | 3_3:-72898630 | Msa0470700:CDS |
| TATTGAAGGACACTTGCGTG+AGG | 0.726035 | 3_3:-72898952 | Msa0470700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr3_3:72900048-72900067 | Msa0470700:CDS | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr3_3:72900049-72900068 | Msa0470700:CDS | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr3_3:72900048-72900067 | Msa0470700:CDS | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr3_3:72900049-72900068 | Msa0470700:CDS | 0.0% |
| !!! | ATTATTAGTCTTATATATAT+TGG | + | chr3_3:72898782-72898801 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTTTTTTACAAT+AGG | + | chr3_3:72899295-72899314 | None:intergenic | 10.0% |
| !! | ATATATATATATATATATGG+GGG | - | chr3_3:72900091-72900110 | Msa0470700:CDS | 10.0% |
| !!! | CATTTTTATAAGTATTATTA+AGG | - | chr3_3:72900186-72900205 | Msa0470700:intron | 10.0% |
| !!! | TCTAATTAATTTTAAATAGA+AGG | + | chr3_3:72900371-72900390 | None:intergenic | 10.0% |
| !! | TAATTAGAATATAAACAAAA+TGG | - | chr3_3:72900383-72900402 | Msa0470700:intron | 10.0% |
| !! | TTAAAGACATAATATATATA+GGG | + | chr3_3:72900486-72900505 | None:intergenic | 10.0% |
| !! | TTTAAAGACATAATATATAT+AGG | + | chr3_3:72900487-72900506 | None:intergenic | 10.0% |
| !!! | TATATATTATGTCTTTAAAA+CGG | - | chr3_3:72900488-72900507 | Msa0470700:intron | 10.0% |
| !!! | ATTATTAGTCTTATATATAT+TGG | + | chr3_3:72898782-72898801 | None:intergenic | 10.0% |
| !!! | ACTTTTTTTTTTTTTACAAT+AGG | + | chr3_3:72899295-72899314 | None:intergenic | 10.0% |
| !! | ATATATATATATATATATGG+GGG | - | chr3_3:72900091-72900110 | Msa0470700:CDS | 10.0% |
| !!! | CATTTTTATAAGTATTATTA+AGG | - | chr3_3:72900186-72900205 | Msa0470700:intron | 10.0% |
| !!! | TCTAATTAATTTTAAATAGA+AGG | + | chr3_3:72900371-72900390 | None:intergenic | 10.0% |
| !! | TAATTAGAATATAAACAAAA+TGG | - | chr3_3:72900383-72900402 | Msa0470700:intron | 10.0% |
| !! | TTAAAGACATAATATATATA+GGG | + | chr3_3:72900486-72900505 | None:intergenic | 10.0% |
| !! | TTTAAAGACATAATATATAT+AGG | + | chr3_3:72900487-72900506 | None:intergenic | 10.0% |
| !!! | TATATATTATGTCTTTAAAA+CGG | - | chr3_3:72900488-72900507 | Msa0470700:intron | 10.0% |
| !!! | ACAATTAAATAAGATTTTAG+TGG | + | chr3_3:72898811-72898830 | None:intergenic | 15.0% |
| !! | GGTGTAATATAAAAAAATAA+TGG | + | chr3_3:72898975-72898994 | None:intergenic | 15.0% |
| !! | GTAAAAAAAAAATACTGTTA+TGG | + | chr3_3:72898996-72899015 | None:intergenic | 15.0% |
| !!! | TTTTTTTTACAATAGGAATT+AGG | + | chr3_3:72899288-72899307 | None:intergenic | 15.0% |
| !!! | CTATACATATTTTTCTTTAT+TGG | - | chr3_3:72899339-72899358 | Msa0470700:intron | 15.0% |
| !!! | ATTAATTTTGTTATCCAAAA+AGG | - | chr3_3:72899974-72899993 | Msa0470700:CDS | 15.0% |
| !!! | CTTTTTTGTTTCTTTTTTTA+AGG | - | chr3_3:72900317-72900336 | Msa0470700:intron | 15.0% |
| !!! | TGTTTTAGTAAATTATAAGT+GGG | - | chr3_3:72900406-72900425 | Msa0470700:intron | 15.0% |
| !! | TAAAGACATAATATATATAG+GGG | + | chr3_3:72900485-72900504 | None:intergenic | 15.0% |
| !!! | TTTCTTTTATTTTCTTTTGA+AGG | - | chr3_3:72900542-72900561 | Msa0470700:intron | 15.0% |
| !!! | ACAATTAAATAAGATTTTAG+TGG | + | chr3_3:72898811-72898830 | None:intergenic | 15.0% |
| !! | GGTGTAATATAAAAAAATAA+TGG | + | chr3_3:72898975-72898994 | None:intergenic | 15.0% |
| !! | GTAAAAAAAAAATACTGTTA+TGG | + | chr3_3:72898996-72899015 | None:intergenic | 15.0% |
| !!! | TTTTTTTTACAATAGGAATT+AGG | + | chr3_3:72899288-72899307 | None:intergenic | 15.0% |
| !!! | CTATACATATTTTTCTTTAT+TGG | - | chr3_3:72899339-72899358 | Msa0470700:intron | 15.0% |
| !!! | ATTAATTTTGTTATCCAAAA+AGG | - | chr3_3:72899974-72899993 | Msa0470700:CDS | 15.0% |
| !!! | CTTTTTTGTTTCTTTTTTTA+AGG | - | chr3_3:72900317-72900336 | Msa0470700:intron | 15.0% |
| !!! | TGTTTTAGTAAATTATAAGT+GGG | - | chr3_3:72900406-72900425 | Msa0470700:intron | 15.0% |
| !! | TAAAGACATAATATATATAG+GGG | + | chr3_3:72900485-72900504 | None:intergenic | 15.0% |
| !!! | TTTCTTTTATTTTCTTTTGA+AGG | - | chr3_3:72900542-72900561 | Msa0470700:intron | 15.0% |
| !! | AATAATCAGTAAAATCAGAT+TGG | + | chr3_3:72898649-72898668 | None:intergenic | 20.0% |
| !!! | CATGTCTTAGTTTAAAATAT+TGG | + | chr3_3:72899025-72899044 | None:intergenic | 20.0% |
| !!! | CTACTTTTATTTTATAAAGC+AGG | - | chr3_3:72899099-72899118 | Msa0470700:intron | 20.0% |
| !! | ATTTATTGATGAATTCATGA+AGG | + | chr3_3:72899209-72899228 | None:intergenic | 20.0% |
| !!! | ACTTTTAAGGAAACAATATT+TGG | + | chr3_3:72900256-72900275 | None:intergenic | 20.0% |
| !!! | GTAATAAAGACAAACTTTTA+AGG | + | chr3_3:72900269-72900288 | None:intergenic | 20.0% |
| !!! | GTGTTTTAGTAAATTATAAG+TGG | - | chr3_3:72900405-72900424 | Msa0470700:intron | 20.0% |
| !! | AAAGACATAATATATATAGG+GGG | + | chr3_3:72900484-72900503 | None:intergenic | 20.0% |
| !! | AATAATCAGTAAAATCAGAT+TGG | + | chr3_3:72898649-72898668 | None:intergenic | 20.0% |
| !!! | CATGTCTTAGTTTAAAATAT+TGG | + | chr3_3:72899025-72899044 | None:intergenic | 20.0% |
| !!! | CTACTTTTATTTTATAAAGC+AGG | - | chr3_3:72899099-72899118 | Msa0470700:intron | 20.0% |
| !! | ATTTATTGATGAATTCATGA+AGG | + | chr3_3:72899209-72899228 | None:intergenic | 20.0% |
| !!! | ACTTTTAAGGAAACAATATT+TGG | + | chr3_3:72900256-72900275 | None:intergenic | 20.0% |
| !!! | GTAATAAAGACAAACTTTTA+AGG | + | chr3_3:72900269-72900288 | None:intergenic | 20.0% |
| !!! | GTGTTTTAGTAAATTATAAG+TGG | - | chr3_3:72900405-72900424 | Msa0470700:intron | 20.0% |
| !! | AAAGACATAATATATATAGG+GGG | + | chr3_3:72900484-72900503 | None:intergenic | 20.0% |
| !! | TAATGGACATGACAAATAAA+TGG | + | chr3_3:72898958-72898977 | None:intergenic | 25.0% |
| ! | AATTGTGATGAAGTAAAAGA+CGG | - | chr3_3:72899177-72899196 | Msa0470700:intron | 25.0% |
| ! | ATTAAAAGCCCTAAAAGAAT+GGG | - | chr3_3:72899523-72899542 | Msa0470700:intron | 25.0% |
| !! | TCCTTTATTTCATCTTGTTT+CGG | - | chr3_3:72899895-72899914 | Msa0470700:CDS | 25.0% |
| !!! | CAATTTTATTTGTGTTTACC+AGG | - | chr3_3:72899951-72899970 | Msa0470700:CDS | 25.0% |
| ! | TTGGATAACAAAATTAATCC+TGG | + | chr3_3:72899972-72899991 | None:intergenic | 25.0% |
| ! | ATGAGTGTAAATAATCAAGT+GGG | + | chr3_3:72900169-72900188 | None:intergenic | 25.0% |
| ! | AATGAGTGTAAATAATCAAG+TGG | + | chr3_3:72900170-72900189 | None:intergenic | 25.0% |
| !! | ATATTTGGAATGATGAAAGT+GGG | + | chr3_3:72900241-72900260 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGATGAAAG+TGG | + | chr3_3:72900242-72900261 | None:intergenic | 25.0% |
| !!! | TGATTGGAATTCTTTGTTTT+GGG | - | chr3_3:72900688-72900707 | Msa0470700:intron | 25.0% |
| ! | AATTAAGAGGATTGAAGAAA+CGG | - | chr3_3:72900736-72900755 | Msa0470700:intron | 25.0% |
| ! | TGCTTGTGTGATATTTATAT+TGG | - | chr3_3:72900826-72900845 | Msa0470700:CDS | 25.0% |
| ! | TGTGTGATATTTATATTGGA+TGG | - | chr3_3:72900830-72900849 | Msa0470700:CDS | 25.0% |
| ! | GTGTGATATTTATATTGGAT+GGG | - | chr3_3:72900831-72900850 | Msa0470700:CDS | 25.0% |
| !! | TAATGGACATGACAAATAAA+TGG | + | chr3_3:72898958-72898977 | None:intergenic | 25.0% |
| ! | AATTGTGATGAAGTAAAAGA+CGG | - | chr3_3:72899177-72899196 | Msa0470700:intron | 25.0% |
| ! | ATTAAAAGCCCTAAAAGAAT+GGG | - | chr3_3:72899523-72899542 | Msa0470700:intron | 25.0% |
| !! | TCCTTTATTTCATCTTGTTT+CGG | - | chr3_3:72899895-72899914 | Msa0470700:CDS | 25.0% |
| !!! | CAATTTTATTTGTGTTTACC+AGG | - | chr3_3:72899951-72899970 | Msa0470700:CDS | 25.0% |
| ! | TTGGATAACAAAATTAATCC+TGG | + | chr3_3:72899972-72899991 | None:intergenic | 25.0% |
| ! | ATGAGTGTAAATAATCAAGT+GGG | + | chr3_3:72900169-72900188 | None:intergenic | 25.0% |
| ! | AATGAGTGTAAATAATCAAG+TGG | + | chr3_3:72900170-72900189 | None:intergenic | 25.0% |
| !! | ATATTTGGAATGATGAAAGT+GGG | + | chr3_3:72900241-72900260 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGATGAAAG+TGG | + | chr3_3:72900242-72900261 | None:intergenic | 25.0% |
| !!! | TGATTGGAATTCTTTGTTTT+GGG | - | chr3_3:72900688-72900707 | Msa0470700:intron | 25.0% |
| ! | AATTAAGAGGATTGAAGAAA+CGG | - | chr3_3:72900736-72900755 | Msa0470700:intron | 25.0% |
| ! | TGCTTGTGTGATATTTATAT+TGG | - | chr3_3:72900826-72900845 | Msa0470700:CDS | 25.0% |
| ! | TGTGTGATATTTATATTGGA+TGG | - | chr3_3:72900830-72900849 | Msa0470700:CDS | 25.0% |
| ! | GTGTGATATTTATATTGGAT+GGG | - | chr3_3:72900831-72900850 | Msa0470700:CDS | 25.0% |
| TATATGTAAGCTCATGCATA+GGG | - | chr3_3:72898724-72898743 | Msa0470700:CDS | 30.0% | |
| ! | AAATGCATGAAAGCATGAAT+TGG | + | chr3_3:72898901-72898920 | None:intergenic | 30.0% |
| TAAGACATGCCAATTTGATT+TGG | - | chr3_3:72899036-72899055 | Msa0470700:intron | 30.0% | |
| ! | AAGACATGCCAATTTGATTT+GGG | - | chr3_3:72899037-72899056 | Msa0470700:intron | 30.0% |
| ! | GTCTTTTACTTCATCACAAT+TGG | + | chr3_3:72899178-72899197 | None:intergenic | 30.0% |
| !! | TTTCTTTATTGGTTCTGAAC+AGG | - | chr3_3:72899350-72899369 | Msa0470700:intron | 30.0% |
| !! | TCTTCGTAAGTTGATATGTT+GGG | + | chr3_3:72899437-72899456 | None:intergenic | 30.0% |
| !! | TTCTTCGTAAGTTGATATGT+TGG | + | chr3_3:72899438-72899457 | None:intergenic | 30.0% |
| CTTCTTCAACTAATATGTCT+TGG | + | chr3_3:72899478-72899497 | None:intergenic | 30.0% | |
| CATTAAAAGCCCTAAAAGAA+TGG | - | chr3_3:72899522-72899541 | Msa0470700:intron | 30.0% | |
| TTAAAAGCCCTAAAAGAATG+GGG | - | chr3_3:72899524-72899543 | Msa0470700:intron | 30.0% | |
| ! | AGATGAGTTATCTCTGATTT+TGG | + | chr3_3:72899554-72899573 | None:intergenic | 30.0% |
| ! | CTCATATTTTGTTCAACTTC+CGG | - | chr3_3:72899572-72899591 | Msa0470700:intron | 30.0% |
| ATCTAAATCCATCCACTAAA+AGG | - | chr3_3:72899639-72899658 | Msa0470700:CDS | 30.0% | |
| ! | GTATAACATGAACCTTTTAG+TGG | + | chr3_3:72899654-72899673 | None:intergenic | 30.0% |
| ATTATTCTCAGCTAGATCTT+TGG | + | chr3_3:72899717-72899736 | None:intergenic | 30.0% | |
| TTATTTCAGAACACACAACA+AGG | + | chr3_3:72899754-72899773 | None:intergenic | 30.0% | |
| !!! | ATAACTGTTGTTACTTTTCG+TGG | - | chr3_3:72899770-72899789 | Msa0470700:CDS | 30.0% |
| !!! | TAACTGTTGTTACTTTTCGT+GGG | - | chr3_3:72899771-72899790 | Msa0470700:CDS | 30.0% |
| ! | GAATCCAAGTGTTTTTCATT+GGG | + | chr3_3:72899797-72899816 | None:intergenic | 30.0% |
| AAAATTGTACCTTCAGAGTT+TGG | + | chr3_3:72899938-72899957 | None:intergenic | 30.0% | |
| ACATGTGAATAAAATGCAAG+CGG | + | chr3_3:72900021-72900040 | None:intergenic | 30.0% | |
| AAAAGACAATGACATGCTTA+AGG | + | chr3_3:72900302-72900321 | None:intergenic | 30.0% | |
| GATAATGTTCCAAGTTTGAT+TGG | - | chr3_3:72900614-72900633 | Msa0470700:intron | 30.0% | |
| ATATTCTCACCAATCAAACT+TGG | + | chr3_3:72900626-72900645 | None:intergenic | 30.0% | |
| !! | CTGATTGGAATTCTTTGTTT+TGG | - | chr3_3:72900687-72900706 | Msa0470700:intron | 30.0% |
| TCAATCCTCTTAATTATTGC+AGG | + | chr3_3:72900731-72900750 | None:intergenic | 30.0% | |
| !! | AAACATGTTTTGAGTGAGTA+TGG | - | chr3_3:72900791-72900810 | Msa0470700:intron | 30.0% |
| TATATGTAAGCTCATGCATA+GGG | - | chr3_3:72898724-72898743 | Msa0470700:CDS | 30.0% | |
| ! | AAATGCATGAAAGCATGAAT+TGG | + | chr3_3:72898901-72898920 | None:intergenic | 30.0% |
| TAAGACATGCCAATTTGATT+TGG | - | chr3_3:72899036-72899055 | Msa0470700:intron | 30.0% | |
| ! | AAGACATGCCAATTTGATTT+GGG | - | chr3_3:72899037-72899056 | Msa0470700:intron | 30.0% |
| ! | GTCTTTTACTTCATCACAAT+TGG | + | chr3_3:72899178-72899197 | None:intergenic | 30.0% |
| !! | TTTCTTTATTGGTTCTGAAC+AGG | - | chr3_3:72899350-72899369 | Msa0470700:intron | 30.0% |
| !! | TCTTCGTAAGTTGATATGTT+GGG | + | chr3_3:72899437-72899456 | None:intergenic | 30.0% |
| !! | TTCTTCGTAAGTTGATATGT+TGG | + | chr3_3:72899438-72899457 | None:intergenic | 30.0% |
| CTTCTTCAACTAATATGTCT+TGG | + | chr3_3:72899478-72899497 | None:intergenic | 30.0% | |
| CATTAAAAGCCCTAAAAGAA+TGG | - | chr3_3:72899522-72899541 | Msa0470700:intron | 30.0% | |
| TTAAAAGCCCTAAAAGAATG+GGG | - | chr3_3:72899524-72899543 | Msa0470700:intron | 30.0% | |
| ! | AGATGAGTTATCTCTGATTT+TGG | + | chr3_3:72899554-72899573 | None:intergenic | 30.0% |
| ! | CTCATATTTTGTTCAACTTC+CGG | - | chr3_3:72899572-72899591 | Msa0470700:intron | 30.0% |
| ATCTAAATCCATCCACTAAA+AGG | - | chr3_3:72899639-72899658 | Msa0470700:CDS | 30.0% | |
| ! | GTATAACATGAACCTTTTAG+TGG | + | chr3_3:72899654-72899673 | None:intergenic | 30.0% |
| ATTATTCTCAGCTAGATCTT+TGG | + | chr3_3:72899717-72899736 | None:intergenic | 30.0% | |
| TTATTTCAGAACACACAACA+AGG | + | chr3_3:72899754-72899773 | None:intergenic | 30.0% | |
| !!! | ATAACTGTTGTTACTTTTCG+TGG | - | chr3_3:72899770-72899789 | Msa0470700:CDS | 30.0% |
| !!! | TAACTGTTGTTACTTTTCGT+GGG | - | chr3_3:72899771-72899790 | Msa0470700:CDS | 30.0% |
| ! | GAATCCAAGTGTTTTTCATT+GGG | + | chr3_3:72899797-72899816 | None:intergenic | 30.0% |
| AAAATTGTACCTTCAGAGTT+TGG | + | chr3_3:72899938-72899957 | None:intergenic | 30.0% | |
| ACATGTGAATAAAATGCAAG+CGG | + | chr3_3:72900021-72900040 | None:intergenic | 30.0% | |
| AAAAGACAATGACATGCTTA+AGG | + | chr3_3:72900302-72900321 | None:intergenic | 30.0% | |
| GATAATGTTCCAAGTTTGAT+TGG | - | chr3_3:72900614-72900633 | Msa0470700:intron | 30.0% | |
| ATATTCTCACCAATCAAACT+TGG | + | chr3_3:72900626-72900645 | None:intergenic | 30.0% | |
| !! | CTGATTGGAATTCTTTGTTT+TGG | - | chr3_3:72900687-72900706 | Msa0470700:intron | 30.0% |
| TCAATCCTCTTAATTATTGC+AGG | + | chr3_3:72900731-72900750 | None:intergenic | 30.0% | |
| !! | AAACATGTTTTGAGTGAGTA+TGG | - | chr3_3:72900791-72900810 | Msa0470700:intron | 30.0% |
| GATTGGTAAATGCAATTGAC+TGG | + | chr3_3:72898632-72898651 | None:intergenic | 35.0% | |
| CTTACATATACGCTTCAGTT+TGG | + | chr3_3:72898714-72898733 | None:intergenic | 35.0% | |
| GTATATGTAAGCTCATGCAT+AGG | - | chr3_3:72898723-72898742 | Msa0470700:CDS | 35.0% | |
| ! | CATGTATATGTGCACTTTTG+GGG | + | chr3_3:72898860-72898879 | None:intergenic | 35.0% |
| ! | GCATGTATATGTGCACTTTT+GGG | + | chr3_3:72898861-72898880 | None:intergenic | 35.0% |
| ! | TGCATGTATATGTGCACTTT+TGG | + | chr3_3:72898862-72898881 | None:intergenic | 35.0% |
| TATTGCAGCCCAAATCAAAT+TGG | + | chr3_3:72899048-72899067 | None:intergenic | 35.0% | |
| !! | AATTTGATTTGGGCTGCAAT+AGG | - | chr3_3:72899047-72899066 | Msa0470700:intron | 35.0% |
| CTTTCAGGATTTCTTCAGTT+AGG | + | chr3_3:72899409-72899428 | None:intergenic | 35.0% | |
| !! | CTTCGTAAGTTGATATGTTG+GGG | + | chr3_3:72899436-72899455 | None:intergenic | 35.0% |
| ! | AACATGAACCTTTTAGTGGA+TGG | + | chr3_3:72899650-72899669 | None:intergenic | 35.0% |
| GATCTAGCTGAGAATAATGT+TGG | - | chr3_3:72899719-72899738 | Msa0470700:CDS | 35.0% | |
| ! | CGAATCCAAGTGTTTTTCAT+TGG | + | chr3_3:72899798-72899817 | None:intergenic | 35.0% |
| AAACACTTGGATTCGTTAGT+TGG | - | chr3_3:72899803-72899822 | Msa0470700:CDS | 35.0% | |
| ! | TTAGTTGGACAAGCACTTTT+TGG | - | chr3_3:72899818-72899837 | Msa0470700:CDS | 35.0% |
| GCCGAAACAAGATGAAATAA+AGG | + | chr3_3:72899899-72899918 | None:intergenic | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr3_3:72900441-72900460 | None:intergenic | 35.0% |
| AAGTGGGTGTAAATTAGTGA+AGG | + | chr3_3:72900225-72900244 | None:intergenic | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr3_3:72900441-72900460 | Msa0470700:intron | 35.0% |
| ACACCAACCTAAAAACACTA+AGG | + | chr3_3:72900451-72900470 | None:intergenic | 35.0% | |
| !!! | TCTTTTGAAGGTGCTATTGA+AGG | - | chr3_3:72900554-72900573 | Msa0470700:intron | 35.0% |
| ! | AGAAGAAACTTTTCACCCAT+TGG | - | chr3_3:72900658-72900677 | Msa0470700:intron | 35.0% |
| ! | GAAGAAACTTTTCACCCATT+GGG | - | chr3_3:72900659-72900678 | Msa0470700:intron | 35.0% |
| TCCAATCAGTAATTCCCAAT+GGG | + | chr3_3:72900676-72900695 | None:intergenic | 35.0% | |
| TTCCAATCAGTAATTCCCAA+TGG | + | chr3_3:72900677-72900696 | None:intergenic | 35.0% | |
| !! | CTAAAATGGGGTGTTTTGTT+TGG | - | chr3_3:72900902-72900921 | Msa0470700:CDS | 35.0% |
| TTAGTGAACATGGTCTATGT+TGG | + | chr3_3:72900972-72900991 | None:intergenic | 35.0% | |
| GATTGGTAAATGCAATTGAC+TGG | + | chr3_3:72898632-72898651 | None:intergenic | 35.0% | |
| CTTACATATACGCTTCAGTT+TGG | + | chr3_3:72898714-72898733 | None:intergenic | 35.0% | |
| GTATATGTAAGCTCATGCAT+AGG | - | chr3_3:72898723-72898742 | Msa0470700:CDS | 35.0% | |
| ! | CATGTATATGTGCACTTTTG+GGG | + | chr3_3:72898860-72898879 | None:intergenic | 35.0% |
| ! | GCATGTATATGTGCACTTTT+GGG | + | chr3_3:72898861-72898880 | None:intergenic | 35.0% |
| ! | TGCATGTATATGTGCACTTT+TGG | + | chr3_3:72898862-72898881 | None:intergenic | 35.0% |
| TATTGCAGCCCAAATCAAAT+TGG | + | chr3_3:72899048-72899067 | None:intergenic | 35.0% | |
| !! | AATTTGATTTGGGCTGCAAT+AGG | - | chr3_3:72899047-72899066 | Msa0470700:intron | 35.0% |
| CTTTCAGGATTTCTTCAGTT+AGG | + | chr3_3:72899409-72899428 | None:intergenic | 35.0% | |
| !! | CTTCGTAAGTTGATATGTTG+GGG | + | chr3_3:72899436-72899455 | None:intergenic | 35.0% |
| ! | AACATGAACCTTTTAGTGGA+TGG | + | chr3_3:72899650-72899669 | None:intergenic | 35.0% |
| GATCTAGCTGAGAATAATGT+TGG | - | chr3_3:72899719-72899738 | Msa0470700:CDS | 35.0% | |
| ! | CGAATCCAAGTGTTTTTCAT+TGG | + | chr3_3:72899798-72899817 | None:intergenic | 35.0% |
| AAACACTTGGATTCGTTAGT+TGG | - | chr3_3:72899803-72899822 | Msa0470700:CDS | 35.0% | |
| ! | TTAGTTGGACAAGCACTTTT+TGG | - | chr3_3:72899818-72899837 | Msa0470700:CDS | 35.0% |
| GCCGAAACAAGATGAAATAA+AGG | + | chr3_3:72899899-72899918 | None:intergenic | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr3_3:72900441-72900460 | None:intergenic | 35.0% |
| AAGTGGGTGTAAATTAGTGA+AGG | + | chr3_3:72900225-72900244 | None:intergenic | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr3_3:72900441-72900460 | Msa0470700:intron | 35.0% |
| ACACCAACCTAAAAACACTA+AGG | + | chr3_3:72900451-72900470 | None:intergenic | 35.0% | |
| !!! | TCTTTTGAAGGTGCTATTGA+AGG | - | chr3_3:72900554-72900573 | Msa0470700:intron | 35.0% |
| ! | AGAAGAAACTTTTCACCCAT+TGG | - | chr3_3:72900658-72900677 | Msa0470700:intron | 35.0% |
| ! | GAAGAAACTTTTCACCCATT+GGG | - | chr3_3:72900659-72900678 | Msa0470700:intron | 35.0% |
| TCCAATCAGTAATTCCCAAT+GGG | + | chr3_3:72900676-72900695 | None:intergenic | 35.0% | |
| TTCCAATCAGTAATTCCCAA+TGG | + | chr3_3:72900677-72900696 | None:intergenic | 35.0% | |
| !! | CTAAAATGGGGTGTTTTGTT+TGG | - | chr3_3:72900902-72900921 | Msa0470700:CDS | 35.0% |
| TTAGTGAACATGGTCTATGT+TGG | + | chr3_3:72900972-72900991 | None:intergenic | 35.0% | |
| ! | TTGAGTCATGTGTTCGCTTT+TGG | + | chr3_3:72898684-72898703 | None:intergenic | 40.0% |
| !!! | ATATGTGCACTTTTGGGGTA+TGG | + | chr3_3:72898855-72898874 | None:intergenic | 40.0% |
| AGTGCACATATACATGCATG+CGG | - | chr3_3:72898864-72898883 | Msa0470700:CDS | 40.0% | |
| ! | ATATGTTGGGGTGTTCTTTC+AGG | + | chr3_3:72899424-72899443 | None:intergenic | 40.0% |
| ! | TGGTCTTCCCCATTCTTTTA+GGG | + | chr3_3:72899534-72899553 | None:intergenic | 40.0% |
| !! | TTGGTCTTCCCCATTCTTTT+AGG | + | chr3_3:72899535-72899554 | None:intergenic | 40.0% |
| !! | ATGAGTTGATAATCAGCACC+AGG | + | chr3_3:72899608-72899627 | None:intergenic | 40.0% |
| AGGTTCATGTTATACCACCA+AGG | - | chr3_3:72899659-72899678 | Msa0470700:CDS | 40.0% | |
| ATCTTTGGCAAGACGAAGAA+CGG | + | chr3_3:72899702-72899721 | None:intergenic | 40.0% | |
| ACGATTCTACCAAACTCTGA+AGG | - | chr3_3:72899926-72899945 | Msa0470700:CDS | 40.0% | |
| TGTTATCCAAAAAGGCCTAG+CGG | - | chr3_3:72899982-72900001 | Msa0470700:CDS | 40.0% | |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr3_3:72900445-72900464 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr3_3:72900444-72900463 | None:intergenic | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+TGG | - | chr3_3:72900445-72900464 | Msa0470700:intron | 40.0% |
| ACCCATTGGGAATTACTGAT+TGG | - | chr3_3:72900672-72900691 | Msa0470700:intron | 40.0% | |
| TAATTATTGCAGGACCACCA+GGG | + | chr3_3:72900721-72900740 | None:intergenic | 40.0% | |
| TTAATTATTGCAGGACCACC+AGG | + | chr3_3:72900722-72900741 | None:intergenic | 40.0% | |
| GTGGTCCTGCAATAATTAAG+AGG | - | chr3_3:72900723-72900742 | Msa0470700:intron | 40.0% | |
| AAGAGGATTGAAGAAACGGT+TGG | - | chr3_3:72900740-72900759 | Msa0470700:intron | 40.0% | |
| TATTGGATGGGATGAGAAGA+AGG | - | chr3_3:72900843-72900862 | Msa0470700:CDS | 40.0% | |
| AGAAGAAGGTCTATGGAAGA+GGG | - | chr3_3:72900857-72900876 | Msa0470700:CDS | 40.0% | |
| AACCGGTGAAGGACTAAAAT+GGG | - | chr3_3:72900889-72900908 | Msa0470700:CDS | 40.0% | |
| !!! | TGGGGTGTTTTGTTTGGATT+TGG | - | chr3_3:72900908-72900927 | Msa0470700:CDS | 40.0% |
| !!! | GTTTTGTTTGGATTTGGTCC+TGG | - | chr3_3:72900914-72900933 | Msa0470700:CDS | 40.0% |
| ATGCAAAGCAATGGTTTCCA+TGG | + | chr3_3:72900945-72900964 | None:intergenic | 40.0% | |
| ! | TTGAGTCATGTGTTCGCTTT+TGG | + | chr3_3:72898684-72898703 | None:intergenic | 40.0% |
| !!! | ATATGTGCACTTTTGGGGTA+TGG | + | chr3_3:72898855-72898874 | None:intergenic | 40.0% |
| AGTGCACATATACATGCATG+CGG | - | chr3_3:72898864-72898883 | Msa0470700:CDS | 40.0% | |
| ! | ATATGTTGGGGTGTTCTTTC+AGG | + | chr3_3:72899424-72899443 | None:intergenic | 40.0% |
| ! | TGGTCTTCCCCATTCTTTTA+GGG | + | chr3_3:72899534-72899553 | None:intergenic | 40.0% |
| !! | TTGGTCTTCCCCATTCTTTT+AGG | + | chr3_3:72899535-72899554 | None:intergenic | 40.0% |
| !! | ATGAGTTGATAATCAGCACC+AGG | + | chr3_3:72899608-72899627 | None:intergenic | 40.0% |
| AGGTTCATGTTATACCACCA+AGG | - | chr3_3:72899659-72899678 | Msa0470700:CDS | 40.0% | |
| ATCTTTGGCAAGACGAAGAA+CGG | + | chr3_3:72899702-72899721 | None:intergenic | 40.0% | |
| ACGATTCTACCAAACTCTGA+AGG | - | chr3_3:72899926-72899945 | Msa0470700:CDS | 40.0% | |
| TGTTATCCAAAAAGGCCTAG+CGG | - | chr3_3:72899982-72900001 | Msa0470700:CDS | 40.0% | |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr3_3:72900445-72900464 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr3_3:72900444-72900463 | None:intergenic | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+TGG | - | chr3_3:72900445-72900464 | Msa0470700:intron | 40.0% |
| ACCCATTGGGAATTACTGAT+TGG | - | chr3_3:72900672-72900691 | Msa0470700:intron | 40.0% | |
| TAATTATTGCAGGACCACCA+GGG | + | chr3_3:72900721-72900740 | None:intergenic | 40.0% | |
| TTAATTATTGCAGGACCACC+AGG | + | chr3_3:72900722-72900741 | None:intergenic | 40.0% | |
| GTGGTCCTGCAATAATTAAG+AGG | - | chr3_3:72900723-72900742 | Msa0470700:intron | 40.0% | |
| AAGAGGATTGAAGAAACGGT+TGG | - | chr3_3:72900740-72900759 | Msa0470700:intron | 40.0% | |
| TATTGGATGGGATGAGAAGA+AGG | - | chr3_3:72900843-72900862 | Msa0470700:CDS | 40.0% | |
| AGAAGAAGGTCTATGGAAGA+GGG | - | chr3_3:72900857-72900876 | Msa0470700:CDS | 40.0% | |
| AACCGGTGAAGGACTAAAAT+GGG | - | chr3_3:72900889-72900908 | Msa0470700:CDS | 40.0% | |
| !!! | TGGGGTGTTTTGTTTGGATT+TGG | - | chr3_3:72900908-72900927 | Msa0470700:CDS | 40.0% |
| !!! | GTTTTGTTTGGATTTGGTCC+TGG | - | chr3_3:72900914-72900933 | Msa0470700:CDS | 40.0% |
| ATGCAAAGCAATGGTTTCCA+TGG | + | chr3_3:72900945-72900964 | None:intergenic | 40.0% | |
| AGTACCAATGGCTAGTATGG+TGG | + | chr3_3:72898603-72898622 | None:intergenic | 45.0% | |
| TGCAGTACCAATGGCTAGTA+TGG | + | chr3_3:72898606-72898625 | None:intergenic | 45.0% | |
| CGAACACATGACTCAACTCA+AGG | - | chr3_3:72898688-72898707 | Msa0470700:CDS | 45.0% | |
| !! | TTGATTTGGGCTGCAATAGG+AGG | - | chr3_3:72899050-72899069 | Msa0470700:intron | 45.0% |
| TATGTCTTGGCGTACGTTGA+GGG | + | chr3_3:72899465-72899484 | None:intergenic | 45.0% | |
| ATATGTCTTGGCGTACGTTG+AGG | + | chr3_3:72899466-72899485 | None:intergenic | 45.0% | |
| !! | GTTGAAGAAGTGCCAAAGCT+AGG | - | chr3_3:72899488-72899507 | Msa0470700:intron | 45.0% |
| TACCACCAAGGTTGTTATGC+TGG | - | chr3_3:72899671-72899690 | Msa0470700:CDS | 45.0% | |
| TTCCACCAGCATAACAACCT+TGG | + | chr3_3:72899679-72899698 | None:intergenic | 45.0% | |
| TGGGCCCAATGAAAAACACT+TGG | - | chr3_3:72899790-72899809 | Msa0470700:CDS | 45.0% | |
| !! | GGACAAGCACTTTTTGGTGA+CGG | - | chr3_3:72899824-72899843 | Msa0470700:CDS | 45.0% |
| ACGCCCACCTAAAAACACTA+AGG | - | chr3_3:72900124-72900143 | Msa0470700:CDS | 45.0% | |
| TATTGAAGGACACTTGCGTG+AGG | - | chr3_3:72900568-72900587 | Msa0470700:intron | 45.0% | |
| !!! | TTGTTTTGGGTAACACACCC+TGG | - | chr3_3:72900701-72900720 | Msa0470700:intron | 45.0% |
| TGGGATGAGAAGAAGGTCTA+TGG | - | chr3_3:72900850-72900869 | Msa0470700:CDS | 45.0% | |
| GAGAAGAAGGTCTATGGAAG+AGG | - | chr3_3:72900856-72900875 | Msa0470700:CDS | 45.0% | |
| GAAGAAGGTCTATGGAAGAG+GGG | - | chr3_3:72900858-72900877 | Msa0470700:CDS | 45.0% | |
| GAAGAGGGGAAAACAACAAC+CGG | - | chr3_3:72900872-72900891 | Msa0470700:CDS | 45.0% | |
| CAACCGGTGAAGGACTAAAA+TGG | - | chr3_3:72900888-72900907 | Msa0470700:CDS | 45.0% | |
| ACCGGTGAAGGACTAAAATG+GGG | - | chr3_3:72900890-72900909 | Msa0470700:CDS | 45.0% | |
| !! | ACCCCATTTTAGTCCTTCAC+CGG | + | chr3_3:72900894-72900913 | None:intergenic | 45.0% |
| AGTACCAATGGCTAGTATGG+TGG | + | chr3_3:72898603-72898622 | None:intergenic | 45.0% | |
| TGCAGTACCAATGGCTAGTA+TGG | + | chr3_3:72898606-72898625 | None:intergenic | 45.0% | |
| CGAACACATGACTCAACTCA+AGG | - | chr3_3:72898688-72898707 | Msa0470700:CDS | 45.0% | |
| !! | TTGATTTGGGCTGCAATAGG+AGG | - | chr3_3:72899050-72899069 | Msa0470700:intron | 45.0% |
| TATGTCTTGGCGTACGTTGA+GGG | + | chr3_3:72899465-72899484 | None:intergenic | 45.0% | |
| ATATGTCTTGGCGTACGTTG+AGG | + | chr3_3:72899466-72899485 | None:intergenic | 45.0% | |
| !! | GTTGAAGAAGTGCCAAAGCT+AGG | - | chr3_3:72899488-72899507 | Msa0470700:intron | 45.0% |
| TACCACCAAGGTTGTTATGC+TGG | - | chr3_3:72899671-72899690 | Msa0470700:CDS | 45.0% | |
| TTCCACCAGCATAACAACCT+TGG | + | chr3_3:72899679-72899698 | None:intergenic | 45.0% | |
| TGGGCCCAATGAAAAACACT+TGG | - | chr3_3:72899790-72899809 | Msa0470700:CDS | 45.0% | |
| !! | GGACAAGCACTTTTTGGTGA+CGG | - | chr3_3:72899824-72899843 | Msa0470700:CDS | 45.0% |
| ACGCCCACCTAAAAACACTA+AGG | - | chr3_3:72900124-72900143 | Msa0470700:CDS | 45.0% | |
| TATTGAAGGACACTTGCGTG+AGG | - | chr3_3:72900568-72900587 | Msa0470700:intron | 45.0% | |
| !!! | TTGTTTTGGGTAACACACCC+TGG | - | chr3_3:72900701-72900720 | Msa0470700:intron | 45.0% |
| TGGGATGAGAAGAAGGTCTA+TGG | - | chr3_3:72900850-72900869 | Msa0470700:CDS | 45.0% | |
| GAGAAGAAGGTCTATGGAAG+AGG | - | chr3_3:72900856-72900875 | Msa0470700:CDS | 45.0% | |
| GAAGAAGGTCTATGGAAGAG+GGG | - | chr3_3:72900858-72900877 | Msa0470700:CDS | 45.0% | |
| GAAGAGGGGAAAACAACAAC+CGG | - | chr3_3:72900872-72900891 | Msa0470700:CDS | 45.0% | |
| CAACCGGTGAAGGACTAAAA+TGG | - | chr3_3:72900888-72900907 | Msa0470700:CDS | 45.0% | |
| ACCGGTGAAGGACTAAAATG+GGG | - | chr3_3:72900890-72900909 | Msa0470700:CDS | 45.0% | |
| !! | ACCCCATTTTAGTCCTTCAC+CGG | + | chr3_3:72900894-72900913 | None:intergenic | 45.0% |
| !! | TATATATATATATATATATG+GGG | - | chr3_3:72900090-72900109 | Msa0470700:CDS | 5.0% |
| !! | TATATATATATATATATATG+GGG | - | chr3_3:72900090-72900109 | Msa0470700:CDS | 5.0% |
| GACTGGAGTTGCAGTACCAA+TGG | + | chr3_3:72898615-72898634 | None:intergenic | 50.0% | |
| !!! | GCTGCTTTTTCGCCTAGCTT+TGG | + | chr3_3:72899503-72899522 | None:intergenic | 50.0% |
| CACCAGCATAACAACCTTGG+TGG | + | chr3_3:72899676-72899695 | None:intergenic | 50.0% | |
| CACCAAGGTTGTTATGCTGG+TGG | - | chr3_3:72899674-72899693 | Msa0470700:CDS | 50.0% | |
| GGTGCTTCATCTGTGATCGT+TGG | - | chr3_3:72899845-72899864 | Msa0470700:CDS | 50.0% | |
| ! | GGACGTTCAAGTGTTGTGTC+TGG | + | chr3_3:72899878-72899897 | None:intergenic | 50.0% |
| !! | TTTTGGGTAACACACCCTGG+TGG | - | chr3_3:72900704-72900723 | Msa0470700:intron | 50.0% |
| GGGAAAACAACAACCGGTGA+AGG | - | chr3_3:72900878-72900897 | Msa0470700:CDS | 50.0% | |
| ! | ATTTGGTCCTGGCTTGACCA+TGG | - | chr3_3:72900925-72900944 | Msa0470700:CDS | 50.0% |
| ATGGTTTCCATGGTCAAGCC+AGG | + | chr3_3:72900935-72900954 | None:intergenic | 50.0% | |
| GTTGGCGCTATGCAAAGCAA+TGG | + | chr3_3:72900954-72900973 | None:intergenic | 50.0% | |
| GACTGGAGTTGCAGTACCAA+TGG | + | chr3_3:72898615-72898634 | None:intergenic | 50.0% | |
| !!! | GCTGCTTTTTCGCCTAGCTT+TGG | + | chr3_3:72899503-72899522 | None:intergenic | 50.0% |
| CACCAGCATAACAACCTTGG+TGG | + | chr3_3:72899676-72899695 | None:intergenic | 50.0% | |
| CACCAAGGTTGTTATGCTGG+TGG | - | chr3_3:72899674-72899693 | Msa0470700:CDS | 50.0% | |
| GGTGCTTCATCTGTGATCGT+TGG | - | chr3_3:72899845-72899864 | Msa0470700:CDS | 50.0% | |
| ! | GGACGTTCAAGTGTTGTGTC+TGG | + | chr3_3:72899878-72899897 | None:intergenic | 50.0% |
| !! | TTTTGGGTAACACACCCTGG+TGG | - | chr3_3:72900704-72900723 | Msa0470700:intron | 50.0% |
| GGGAAAACAACAACCGGTGA+AGG | - | chr3_3:72900878-72900897 | Msa0470700:CDS | 50.0% | |
| ! | ATTTGGTCCTGGCTTGACCA+TGG | - | chr3_3:72900925-72900944 | Msa0470700:CDS | 50.0% |
| ATGGTTTCCATGGTCAAGCC+AGG | + | chr3_3:72900935-72900954 | None:intergenic | 50.0% | |
| GTTGGCGCTATGCAAAGCAA+TGG | + | chr3_3:72900954-72900973 | None:intergenic | 50.0% | |
| AGAGAGTCCCAAAGAGCTCG+TGG | - | chr3_3:72898572-72898591 | Msa0470700:CDS | 55.0% | |
| CCAATGGCTAGTATGGTGGC+TGG | + | chr3_3:72898599-72898618 | None:intergenic | 55.0% | |
| CCAGCCACCATACTAGCCAT+TGG | - | chr3_3:72898596-72898615 | Msa0470700:CDS | 55.0% | |
| TCTTGGCGTACGTTGAGGGA+TGG | + | chr3_3:72899461-72899480 | None:intergenic | 55.0% | |
| ACTTCCGGAGTTGACATGCC+TGG | - | chr3_3:72899587-72899606 | Msa0470700:intron | 55.0% | |
| AGCACCAGGCATGTCAACTC+CGG | + | chr3_3:72899594-72899613 | None:intergenic | 55.0% | |
| ! | GCTAAGCCGCTAGGCCTTTT+TGG | + | chr3_3:72899991-72900010 | None:intergenic | 55.0% |
| GGACAACAAGCTAAGCCGCT+AGG | + | chr3_3:72900000-72900019 | None:intergenic | 55.0% | |
| TGAAGGACACTTGCGTGAGG+TGG | - | chr3_3:72900571-72900590 | Msa0470700:intron | 55.0% | |
| GAAGGACACTTGCGTGAGGT+GGG | - | chr3_3:72900572-72900591 | Msa0470700:intron | 55.0% | |
| AGAGAGTCCCAAAGAGCTCG+TGG | - | chr3_3:72898572-72898591 | Msa0470700:CDS | 55.0% | |
| CCAATGGCTAGTATGGTGGC+TGG | + | chr3_3:72898599-72898618 | None:intergenic | 55.0% | |
| CCAGCCACCATACTAGCCAT+TGG | - | chr3_3:72898596-72898615 | Msa0470700:CDS | 55.0% | |
| TCTTGGCGTACGTTGAGGGA+TGG | + | chr3_3:72899461-72899480 | None:intergenic | 55.0% | |
| ACTTCCGGAGTTGACATGCC+TGG | - | chr3_3:72899587-72899606 | Msa0470700:intron | 55.0% | |
| AGCACCAGGCATGTCAACTC+CGG | + | chr3_3:72899594-72899613 | None:intergenic | 55.0% | |
| ! | GCTAAGCCGCTAGGCCTTTT+TGG | + | chr3_3:72899991-72900010 | None:intergenic | 55.0% |
| GGACAACAAGCTAAGCCGCT+AGG | + | chr3_3:72900000-72900019 | None:intergenic | 55.0% | |
| TGAAGGACACTTGCGTGAGG+TGG | - | chr3_3:72900571-72900590 | Msa0470700:intron | 55.0% | |
| GAAGGACACTTGCGTGAGGT+GGG | - | chr3_3:72900572-72900591 | Msa0470700:intron | 55.0% | |
| GGCTGGACCACGAGCTCTTT+GGG | + | chr3_3:72898582-72898601 | None:intergenic | 60.0% | |
| TGGCTGGACCACGAGCTCTT+TGG | + | chr3_3:72898583-72898602 | None:intergenic | 60.0% | |
| GGCTGGACCACGAGCTCTTT+GGG | + | chr3_3:72898582-72898601 | None:intergenic | 60.0% | |
| TGGCTGGACCACGAGCTCTT+TGG | + | chr3_3:72898583-72898602 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 72898551 | 72900991 | 72898551 | ID=Msa0470700;Name=Msa0470700 |
| chr3_3 | mRNA | 72898551 | 72900991 | 72898551 | ID=Msa0470700-mRNA-1;Parent=Msa0470700;Name=Msa0470700-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.66|1|1|3|0|393 |
| chr3_3 | exon | 72900814 | 72900991 | 72900814 | ID=Msa0470700-mRNA-1:exon:18382;Parent=Msa0470700-mRNA-1 |
| chr3_3 | exon | 72899595 | 72900170 | 72899595 | ID=Msa0470700-mRNA-1:exon:18381;Parent=Msa0470700-mRNA-1 |
| chr3_3 | exon | 72898551 | 72898978 | 72898551 | ID=Msa0470700-mRNA-1:exon:18380;Parent=Msa0470700-mRNA-1 |
| chr3_3 | CDS | 72900814 | 72900991 | 72900814 | ID=Msa0470700-mRNA-1:cds;Parent=Msa0470700-mRNA-1 |
| chr3_3 | CDS | 72899595 | 72900170 | 72899595 | ID=Msa0470700-mRNA-1:cds;Parent=Msa0470700-mRNA-1 |
| chr3_3 | CDS | 72898551 | 72898978 | 72898551 | ID=Msa0470700-mRNA-1:cds;Parent=Msa0470700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
