AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0776540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776540 MtrunA17_Chr5g0421011 97.429 350 9 0 1 350 1 350 0.0 707
Msa0776540 MtrunA17_Chr5g0423191 73.429 350 93 0 1 350 1 350 0.0 540
Msa0776540 MtrunA17_Chr5g0421041 71.714 350 97 1 1 350 1 348 0.0 528
Msa0776540 MtrunA17_Chr5g0423251 71.347 349 100 0 1 349 1 349 0.0 528
Msa0776540 MtrunA17_Chr5g0421101 66.761 352 117 0 1 352 1 352 6.38e-180 502
Msa0776540 MtrunA17_Chr5g0423221 67.429 350 113 1 1 349 25 374 1.55e-179 502
Msa0776540 MtrunA17_Chr5g0423201 68.000 350 111 1 1 349 1 350 1.58e-178 499
Msa0776540 MtrunA17_Chr5g0420951 67.898 352 111 2 1 350 6 357 4.36e-174 488
Msa0776540 MtrunA17_Chr8g0365241 67.806 351 112 1 1 350 11 361 9.78e-172 482
Msa0776540 MtrunA17_Chr5g0420941 63.037 349 129 0 6 354 4 352 1.99e-165 466
Msa0776540 MtrunA17_Chr5g0420981 65.527 351 119 2 1 349 6 356 6.50e-165 464
Msa0776540 MtrunA17_Chr5g0420901 62.500 344 129 0 9 352 8 351 1.34e-164 463
Msa0776540 MtrunA17_Chr5g0421091 61.782 348 132 1 6 352 4 351 3.15e-161 455
Msa0776540 MtrunA17_Chr5g0423211 61.932 352 128 3 5 351 3 353 7.51e-160 451
Msa0776540 MtrunA17_Chr8g0375571 59.942 347 135 1 6 348 4 350 1.70e-151 430
Msa0776540 MtrunA17_Chr8g0375671 59.195 348 138 1 7 350 12 359 1.72e-150 428
Msa0776540 MtrunA17_Chr8g0375601 58.960 346 136 2 10 349 8 353 6.95e-147 419
Msa0776540 MtrunA17_Chr2g0314391 58.333 348 143 1 5 350 28 375 7.75e-147 419
Msa0776540 MtrunA17_Chr2g0314401 56.936 346 147 1 5 348 9 354 1.34e-146 418
Msa0776540 MtrunA17_Chr2g0314381 56.447 349 149 2 5 350 34 382 1.60e-143 411
Msa0776540 MtrunA17_Chr5g0420721 72.619 252 69 0 99 350 1 252 2.18e-138 393
Msa0776540 MtrunA17_Chr1g0162191 54.416 351 151 4 4 350 8 353 1.10e-128 372
Msa0776540 MtrunA17_Chr8g0375681 59.058 276 111 1 78 351 15 290 3.89e-116 338
Msa0776540 MtrunA17_Chr8g0375701 45.058 344 187 2 6 348 13 355 5.49e-107 317
Msa0776540 MtrunA17_Chr2g0314371 49.211 317 134 4 5 296 9 323 6.06e-104 309
Msa0776540 MtrunA17_Chr7g0239111 38.527 353 210 2 4 352 11 360 3.72e-96 290
Msa0776540 MtrunA17_Chr7g0239121 38.136 354 211 3 4 352 7 357 1.10e-94 286
Msa0776540 MtrunA17_Chr7g0239821 38.416 341 209 1 10 349 26 366 2.30e-94 285
Msa0776540 MtrunA17_Chr7g0239101 37.464 347 216 1 4 349 11 357 1.26e-91 278
Msa0776540 MtrunA17_Chr2g0296371 40.462 346 198 4 10 349 14 357 3.91e-88 269
Msa0776540 MtrunA17_Chr3g0087031 38.905 347 205 4 6 348 17 360 4.65e-86 264
Msa0776540 MtrunA17_Chr7g0242551 38.110 328 191 4 13 328 15 342 1.46e-79 247
Msa0776540 MtrunA17_Chr7g0232161 39.789 284 164 2 4 283 16 296 1.79e-79 246
Msa0776540 MtrunA17_Chr4g0006371 36.103 349 202 4 1 328 2 350 2.10e-76 239
Msa0776540 MtrunA17_Chr3g0113641 34.402 343 216 4 13 347 15 356 1.62e-74 234
Msa0776540 MtrunA17_Chr7g0239091 33.038 339 216 3 11 348 123 451 3.77e-74 236
Msa0776540 MtrunA17_Chr5g0437181 35.088 342 215 3 13 347 14 355 1.89e-73 231
Msa0776540 MtrunA17_Chr5g0420881 68.966 145 45 0 206 350 2 146 3.08e-73 224
Msa0776540 MtrunA17_Chr3g0145171 37.898 314 190 3 38 348 43 354 5.69e-73 230
Msa0776540 MtrunA17_Chr8g0370721 39.869 306 179 3 46 348 51 354 3.22e-72 228
Msa0776540 MtrunA17_Chr7g0239071 35.714 280 179 1 70 349 24 302 8.54e-71 223
Msa0776540 MtrunA17_Chr3g0128001 36.086 327 203 4 23 347 14 336 1.79e-70 223
Msa0776540 MtrunA17_Chr3g0109041 33.621 348 218 7 13 350 10 354 2.46e-70 223
Msa0776540 MtrunA17_Chr5g0426891 37.183 355 199 9 4 348 2 342 2.75e-69 220
Msa0776540 MtrunA17_Chr8g0370711 38.235 306 184 3 46 348 51 354 9.75e-69 219
Msa0776540 MtrunA17_Chr5g0420891 63.816 152 55 0 9 160 8 159 2.25e-67 209
Msa0776540 MtrunA17_Chr4g0064781 36.127 346 212 6 8 350 11 350 3.04e-67 215
Msa0776540 MtrunA17_Chr8g0345831 33.043 345 225 6 7 348 2 343 1.60e-63 205
Msa0776540 MtrunA17_Chr7g0265221 32.493 357 215 8 14 348 28 380 2.98e-60 198
Msa0776540 MtrunA17_Chr5g0412651 34.810 316 198 5 28 336 19 333 1.28e-59 196
Msa0776540 MtrunA17_Chr3g0145181 35.542 332 198 7 12 332 12 338 1.07e-58 193
Msa0776540 MtrunA17_Chr5g0398291 33.431 341 211 6 13 338 8 347 1.96e-58 192
Msa0776540 MtrunA17_Chr3g0125201 36.000 300 176 5 47 337 3 295 1.56e-57 189
Msa0776540 MtrunA17_Chr1g0179801 32.493 357 222 8 7 348 21 373 2.01e-57 191
Msa0776540 MtrunA17_Chr8g0375641 55.063 158 67 1 7 160 12 169 8.65e-56 180
Msa0776540 MtrunA17_Chr3g0114861 32.733 333 210 6 10 335 3 328 3.51e-55 183
Msa0776540 MtrunA17_Chr8g0375661 53.797 158 69 1 7 160 12 169 6.84e-55 177
Msa0776540 MtrunA17_Chr3g0145201 37.415 294 174 5 46 332 683 973 1.99e-54 192
Msa0776540 MtrunA17_Chr3g0126741 36.893 309 180 7 47 347 59 360 2.13e-54 182
Msa0776540 MtrunA17_Chr5g0412671 32.298 322 210 5 22 336 13 333 7.81e-54 180
Msa0776540 MtrunA17_Chr2g0332191 31.231 333 211 7 20 341 24 349 4.94e-53 179
Msa0776540 MtrunA17_Chr5g0412681 33.333 291 184 5 47 333 33 317 5.06e-53 178
Msa0776540 MtrunA17_Chr7g0266651 29.640 361 233 10 1 350 14 364 1.52e-52 177
Msa0776540 MtrunA17_Chr1g0162361 33.882 304 171 7 46 329 26 319 2.37e-52 176
Msa0776540 MtrunA17_Chr4g0050031 34.185 313 187 7 47 348 62 366 3.38e-52 177
Msa0776540 MtrunA17_Chr2g0311921 29.275 345 232 6 12 348 18 358 4.43e-52 176
Msa0776540 MtrunA17_Chr4g0045441 33.645 321 188 8 47 345 26 343 9.99e-52 175
Msa0776540 MtrunA17_Chr2g0289341 30.464 302 198 5 44 340 1 295 1.11e-51 174
Msa0776540 MtrunA17_Chr5g0424201 31.420 331 219 6 10 335 6 333 1.41e-51 174
Msa0776540 MtrunA17_Chr4g0045411 32.248 307 178 6 47 331 30 328 3.44e-51 174
Msa0776540 MtrunA17_Chr1g0187821 33.136 338 206 7 23 348 41 370 6.18e-51 174
Msa0776540 MtrunA17_Chr1g0161041 32.081 346 215 9 12 347 59 394 1.01e-50 174
Msa0776540 MtrunA17_Chr1g0162351 30.194 361 207 9 20 349 43 389 1.71e-50 173
Msa0776540 MtrunA17_Chr4g0045471 33.432 338 191 12 15 329 2 328 1.76e-50 172
Msa0776540 MtrunA17_Chr8g0354261 30.791 354 219 10 12 349 32 375 2.23e-50 172
Msa0776540 MtrunA17_Chr8g0336781 30.702 342 219 9 12 343 62 395 2.44e-50 173
Msa0776540 MtrunA17_Chr1g0187831 32.267 344 210 9 21 349 40 375 3.29e-50 172
Msa0776540 MtrunA17_Chr1g0204181 34.091 308 187 7 22 317 36 339 4.13e-50 171
Msa0776540 MtrunA17_Chr8g0336761 30.321 343 218 9 12 343 27 359 6.11e-49 168
Msa0776540 MtrunA17_Chr1g0162321 29.917 361 208 9 20 349 43 389 7.92e-49 169
Msa0776540 MtrunA17_Chr8g0354241 29.944 354 222 9 12 349 32 375 1.13e-48 168
Msa0776540 MtrunA17_Chr3g0121141 29.900 301 199 5 44 340 1 293 2.13e-48 165
Msa0776540 MtrunA17_Chr1g0187811 31.302 361 226 10 2 348 141 493 2.95e-48 169
Msa0776540 MtrunA17_Chr2g0311761 30.725 345 227 6 12 348 32 372 3.26e-48 166
Msa0776540 MtrunA17_Chr8g0336751 30.225 311 208 5 44 350 94 399 3.81e-48 167
Msa0776540 MtrunA17_Chr8g0336851 30.645 310 202 6 42 343 55 359 4.84e-48 166
Msa0776540 MtrunA17_Chr8g0336861 29.885 348 225 8 12 348 27 366 6.19e-48 166
Msa0776540 MtrunA17_Chr1g0148771 33.916 286 175 7 47 329 63 337 8.01e-48 165
Msa0776540 MtrunA17_Chr5g0439011 31.000 300 193 5 48 340 6 298 8.55e-48 164
Msa0776540 MtrunA17_Chr1g0161081 32.267 344 217 8 12 347 36 371 1.64e-47 164
Msa0776540 MtrunA17_Chr3g0093761 30.925 346 221 9 12 348 17 353 1.86e-47 164
Msa0776540 MtrunA17_Chr8g0348081 31.429 315 199 8 39 343 52 359 3.09e-47 164
Msa0776540 MtrunA17_Chr7g0250511 28.779 344 233 7 12 348 13 351 4.93e-47 163
Msa0776540 MtrunA17_Chr8g0336631 29.825 342 222 8 12 343 27 360 1.23e-46 162
Msa0776540 MtrunA17_Chr1g0161111 32.836 335 209 8 21 347 104 430 1.43e-46 164
Msa0776540 MtrunA17_Chr4g0066121 30.347 346 219 10 12 346 27 361 1.98e-46 162
Msa0776540 MtrunA17_Chr8g0371931 30.976 297 197 4 16 307 10 303 2.09e-46 161
Msa0776540 MtrunA17_Chr3g0093741 29.942 344 228 9 12 348 17 354 2.34e-46 161
Msa0776540 MtrunA17_Chr1g0184161 33.542 319 198 8 24 335 15 326 2.63e-46 160
Msa0776540 MtrunA17_Chr2g0311831 30.145 345 228 7 12 348 32 371 2.69e-46 161
Msa0776540 MtrunA17_Chr7g0220001 32.602 319 199 8 24 335 18 327 3.17e-46 160
Msa0776540 MtrunA17_Chr6g0455481 33.437 323 192 11 24 335 19 329 4.15e-46 160
Msa0776540 MtrunA17_Chr5g0424211 32.852 277 177 4 47 317 42 315 5.76e-46 159
Msa0776540 MtrunA17_Chr8g0371921 30.363 303 203 4 10 307 4 303 7.38e-46 160
Msa0776540 MtrunA17_Chr5g0405411 32.117 274 173 5 41 307 36 303 9.56e-46 159
Msa0776540 MtrunA17_Chr4g0045431 32.399 321 192 8 47 345 26 343 2.70e-45 158
Msa0776540 MtrunA17_Chr4g0045451 31.803 305 183 9 47 329 26 327 3.79e-45 158
Msa0776540 MtrunA17_Chr3g0093751 30.548 347 222 10 12 348 17 354 4.32e-45 158
Msa0776540 MtrunA17_Chr7g0220011 30.696 316 209 5 24 335 16 325 1.88e-44 155
Msa0776540 MtrunA17_Chr3g0102041 30.483 269 184 3 41 307 36 303 3.25e-44 155
Msa0776540 MtrunA17_Chr3g0125421 30.938 320 204 7 23 330 15 329 4.37e-44 155
Msa0776540 MtrunA17_Chr7g0265351 30.721 319 210 8 34 348 26 337 4.54e-44 154
Msa0776540 MtrunA17_Chr1g0167911 30.267 337 222 6 12 341 19 349 6.20e-44 155
Msa0776540 MtrunA17_Chr4g0055591 29.721 323 205 8 35 348 52 361 8.11e-44 154
Msa0776540 MtrunA17_Chr6g0474391 31.090 312 191 7 22 317 41 344 4.73e-43 153
Msa0776540 MtrunA17_Chr1g0184121 29.907 321 220 4 18 335 8 326 6.65e-43 152
Msa0776540 MtrunA17_Chr8g0351101 30.421 309 198 6 21 317 30 333 6.73e-43 152
Msa0776540 MtrunA17_Chr1g0184111 29.755 326 220 5 18 338 8 329 1.29e-42 151
Msa0776540 MtrunA17_Chr2g0311701 29.041 365 234 9 1 350 23 377 1.74e-42 151
Msa0776540 MtrunA17_Chr6g0488511 31.126 302 187 7 47 341 3 290 3.02e-42 149
Msa0776540 MtrunA17_Chr2g0311741 30.189 318 207 7 38 348 18 327 3.17e-42 149
Msa0776540 MtrunA17_Chr8g0375591 55.906 127 51 2 7 128 5 131 6.44e-42 142
Msa0776540 MtrunA17_Chr2g0311631 28.448 348 231 9 12 348 21 361 1.35e-41 149
Msa0776540 MtrunA17_Chr1g0184241 29.107 347 224 9 12 348 33 367 1.40e-41 149
Msa0776540 MtrunA17_Chr6g0472861 28.940 349 224 9 12 343 27 368 2.07e-41 149
Msa0776540 MtrunA17_Chr3g0130391 30.619 307 197 6 19 313 40 342 6.28e-41 147
Msa0776540 MtrunA17_Chr2g0319491 28.205 312 197 8 46 348 32 325 1.20e-40 145
Msa0776540 MtrunA17_Chr2g0311691 28.650 363 234 9 1 348 17 369 1.20e-40 146
Msa0776540 MtrunA17_Chr2g0311681 28.099 363 236 9 1 348 17 369 1.20e-40 146
Msa0776540 MtrunA17_Chr7g0225881 27.429 350 237 7 12 349 27 371 1.22e-40 146
Msa0776540 MtrunA17_Chr1g0191201 32.131 305 184 7 24 313 33 329 1.86e-40 146
Msa0776540 MtrunA17_Chr4g0068891 32.907 313 192 8 35 337 6 310 2.11e-40 144
Msa0776540 MtrunA17_Chr8g0384461 29.595 321 203 8 12 320 19 328 3.83e-40 145
Msa0776540 MtrunA17_Chr1g0184151 29.154 319 212 7 24 335 15 326 5.24e-40 144
Msa0776540 MtrunA17_Chr3g0114871 32.130 277 177 7 7 278 4 274 7.82e-40 142
Msa0776540 MtrunA17_Chr8g0364471 26.023 342 238 6 12 343 32 368 8.52e-40 144
Msa0776540 MtrunA17_Chr4g0045461 30.864 324 192 7 34 328 5 325 2.17e-39 143
Msa0776540 MtrunA17_Chr1g0184101 29.907 321 204 9 24 333 14 324 4.36e-39 142
Msa0776540 MtrunA17_Chr2g0311711 28.125 352 227 9 12 348 30 370 4.94e-39 142
Msa0776540 MtrunA17_Chr2g0285931 29.904 311 196 10 40 337 21 322 5.51e-39 141
Msa0776540 MtrunA17_Chr7g0235951 27.350 351 232 8 12 348 32 373 6.73e-39 142
Msa0776540 MtrunA17_Chr8g0358941 31.922 307 184 11 46 337 26 322 8.38e-38 138
Msa0776540 MtrunA17_Chr2g0311861 28.198 344 216 8 12 348 28 347 9.42e-38 138
Msa0776540 MtrunA17_Chr4g0066991 28.291 357 215 8 4 348 26 353 1.95e-37 137
Msa0776540 MtrunA17_Chr1g0167951 27.697 343 236 6 12 348 19 355 2.29e-37 137
Msa0776540 MtrunA17_Chr1g0170631 35.052 194 121 3 160 350 3 194 1.52e-36 130
Msa0776540 MtrunA17_Chr8g0375581 67.442 86 28 0 181 266 1 86 2.80e-36 126
Msa0776540 MtrunA17_Chr2g0313111 32.364 275 167 9 46 312 27 290 4.34e-36 133
Msa0776540 MtrunA17_Chr1g0167961 27.954 347 232 10 12 348 34 372 7.41e-35 131
Msa0776540 MtrunA17_Chr8g0335411 26.801 347 239 6 12 348 32 373 8.19e-35 131
Msa0776540 MtrunA17_Chr7g0236011 26.934 349 236 8 12 348 32 373 1.34e-34 130
Msa0776540 MtrunA17_Chr3g0126761 45.517 145 77 2 203 347 89 231 1.75e-34 126
Msa0776540 MtrunA17_Chr5g0420731 69.880 83 25 0 1 83 1 83 3.28e-34 122
Msa0776540 MtrunA17_Chr1g0194321 29.970 337 205 11 35 349 6 333 1.83e-33 127
Msa0776540 MtrunA17_Chr3g0105281 30.970 268 163 7 47 305 34 288 3.01e-33 125
Msa0776540 MtrunA17_Chr7g0247991 26.934 349 236 7 12 348 32 373 6.37e-33 125
Msa0776540 MtrunA17_Chr7g0235981 27.273 275 189 4 80 348 58 327 8.85e-33 124
Msa0776540 MtrunA17_Chr4g0075471 40.945 127 73 1 208 332 32 158 1.31e-32 119
Msa0776540 MtrunA17_Chr4g0052251 28.873 284 180 9 69 337 46 322 1.65e-31 121
Msa0776540 MtrunA17_Chr1g0167931 26.163 344 203 7 12 348 19 318 1.66e-31 120
Msa0776540 MtrunA17_Chr4g0011311 29.044 272 178 6 4 269 26 288 2.73e-31 120
Msa0776540 MtrunA17_Chr4g0053251 31.488 289 165 9 46 307 7 289 2.81e-31 120
Msa0776540 MtrunA17_Chr4g0064771 28.185 259 131 3 83 340 1 205 6.48e-30 114
Msa0776540 MtrunA17_Chr2g0293931 36.364 198 109 8 163 347 10 203 2.61e-29 112
Msa0776540 MtrunA17_Chr8g0384481 28.479 309 202 8 24 320 38 339 6.45e-29 115
Msa0776540 MtrunA17_Chr8g0336801 36.170 141 86 2 206 343 12 151 2.90e-28 107
Msa0776540 MtrunA17_Chr5g0394071 44.355 124 63 3 200 321 42 161 9.21e-28 107
Msa0776540 MtrunA17_Chr5g0407781 27.653 311 198 8 47 348 5 297 1.82e-27 109
Msa0776540 MtrunA17_Chr4g0037611 36.025 161 92 4 169 328 3 153 2.07e-27 106
Msa0776540 MtrunA17_Chr7g0233661 39.535 129 71 2 200 328 16 137 2.48e-27 105
Msa0776540 MtrunA17_Chr3g0092531 28.956 297 185 10 45 328 4 287 4.47e-27 108
Msa0776540 MtrunA17_Chr2g0314361 59.259 81 33 0 270 350 1 81 1.54e-26 100
Msa0776540 MtrunA17_Chr4g0055911 29.605 304 191 11 46 333 8 304 7.50e-25 102
Msa0776540 MtrunA17_Chr1g0158011 34.211 190 120 4 163 348 73 261 8.28e-25 101
Msa0776540 MtrunA17_Chr8g0362741 26.838 272 169 7 4 269 26 273 2.45e-24 100
Msa0776540 MtrunA17_Chr8g0348951 28.146 302 196 10 41 330 2 294 7.58e-24 100
Msa0776540 MtrunA17_Chr7g0247741 27.907 301 197 9 40 330 4 294 9.12e-24 100
Msa0776540 MtrunA17_Chr6g0486831 26.962 293 186 11 66 334 38 326 7.03e-23 97.8
Msa0776540 MtrunA17_Chr5g0407731 24.924 329 226 9 29 348 15 331 2.97e-22 95.9
Msa0776540 MtrunA17_Chr7g0256741 26.144 306 201 9 47 338 10 304 6.47e-21 92.0
Msa0776540 MtrunA17_Chr8g0336871 29.310 174 110 4 173 343 6 169 9.38e-21 88.2
Msa0776540 MtrunA17_Chr4g0004071 28.571 315 209 10 46 352 8 314 9.52e-21 91.3
Msa0776540 MtrunA17_Chr3g0138351 25.949 316 197 12 46 338 6 307 6.76e-20 89.0
Msa0776540 MtrunA17_Chr4g0004061 27.329 322 219 10 39 352 1 315 7.12e-20 89.0
Msa0776540 MtrunA17_Chr4g0055871 26.408 284 177 8 69 333 29 299 8.69e-20 88.6
Msa0776540 MtrunA17_Chr8g0389941 26.073 303 178 11 66 338 51 337 1.46e-19 88.6
Msa0776540 MtrunA17_Chr2g0319521 34.746 118 76 1 152 269 8 124 1.90e-19 83.6
Msa0776540 MtrunA17_Chr4g0009561 24.675 308 212 11 46 338 6 308 1.88e-17 82.0
Msa0776540 MtrunA17_Chr1g0158031 29.508 183 122 4 170 348 1 180 2.24e-17 79.0
Msa0776540 MtrunA17_Chr7g0219991 41.176 102 59 1 166 267 254 354 5.97e-17 80.9
Msa0776540 MtrunA17_Chr8g0336831 28.061 196 125 6 42 228 55 243 6.78e-17 79.3
Msa0776540 MtrunA17_Chr4g0009541 26.953 256 167 10 89 333 54 300 2.12e-16 79.0
Msa0776540 MtrunA17_Chr8g0375621 58.929 56 23 0 181 236 1 56 2.23e-16 72.8
Msa0776540 MtrunA17_Chr8g0364171 34.545 110 71 1 160 269 18 126 1.91e-15 72.8
Msa0776540 MtrunA17_Chr1g0161101 41.818 110 53 3 191 299 392 491 4.93e-15 76.3
Msa0776540 MtrunA17_Chr3g0092581 30.894 123 80 4 208 328 40 159 5.58e-14 69.7
Msa0776540 MtrunA17_Chr2g0311611 38.028 71 36 2 206 269 2 71 2.17e-13 64.7
Msa0776540 MtrunA17_Chr7g0239081 40.244 82 42 2 4 81 16 94 1.14e-11 60.8
Msa0776540 MtrunA17_Chr1g0148781 25.084 299 191 13 51 329 17 302 1.62e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0776540 AT1G17020.1 53.295 349 157 4 6 348 10 358 1.15e-136 393
Msa0776540 AT1G17010.1 51.567 351 164 4 6 350 10 360 1.82e-129 375
Msa0776540 AT4G25300.1 50.000 348 169 4 6 348 9 356 1.21e-126 367
Msa0776540 AT1G78550.1 47.550 347 178 3 6 348 10 356 4.91e-124 361
Msa0776540 AT4G25310.1 48.563 348 171 4 6 348 9 353 4.59e-120 351
Msa0776540 AT1G78550.2 48.399 281 141 1 68 348 2 278 8.47e-104 306
Msa0776540 AT4G25310.2 44.380 347 159 4 6 348 9 325 4.85e-101 301
Msa0776540 AT3G21420.1 42.735 351 191 5 10 350 14 364 6.38e-93 282
Msa0776540 AT2G38240.1 37.135 342 209 4 12 348 11 351 2.15e-82 254
Msa0776540 AT5G05600.1 33.628 339 218 3 13 344 27 365 3.87e-71 226
Msa0776540 AT3G55970.1 34.006 347 217 5 13 347 14 360 4.26e-71 226
Msa0776540 AT3G11180.1 34.218 339 216 2 13 344 56 394 1.29e-69 223
Msa0776540 AT3G11180.2 34.985 323 203 2 13 328 56 378 2.26e-69 223
Msa0776540 AT5G20400.1 35.562 329 203 5 24 345 19 345 5.58e-69 220
Msa0776540 AT4G25300.2 52.880 191 89 1 159 348 72 262 2.67e-68 215
Msa0776540 AT5G20550.1 37.188 320 190 7 24 333 19 337 4.61e-67 215
Msa0776540 AT1G49390.1 33.636 330 208 6 24 345 19 345 1.81e-66 214
Msa0776540 AT5G54000.2 35.117 299 188 3 46 340 45 341 1.78e-64 208
Msa0776540 AT4G16330.2 35.294 306 184 6 46 346 66 362 8.48e-64 207
Msa0776540 AT5G24530.1 34.769 325 205 4 24 344 15 336 3.80e-63 205
Msa0776540 AT4G10500.1 32.727 330 216 6 22 347 18 345 1.34e-62 204
Msa0776540 AT2G36690.2 32.665 349 220 7 13 350 21 365 6.08e-60 197
Msa0776540 AT2G36690.1 32.665 349 220 7 13 350 21 365 6.08e-60 197
Msa0776540 AT1G49390.2 34.701 268 172 2 79 345 1 266 7.98e-60 194
Msa0776540 AT4G22880.1 34.251 327 198 6 10 320 4 329 9.29e-59 194
Msa0776540 AT4G22880.2 34.251 327 198 6 10 320 4 329 9.29e-59 194
Msa0776540 AT4G22880.3 34.251 327 198 6 10 320 4 329 9.29e-59 194
Msa0776540 AT5G54000.1 35.361 263 167 2 79 340 1 261 9.56e-59 191
Msa0776540 AT4G10490.1 32.827 329 214 6 24 347 18 344 1.62e-58 193
Msa0776540 AT5G05600.2 33.712 264 168 3 13 269 27 290 1.63e-54 181
Msa0776540 AT3G19010.1 34.118 340 192 10 33 350 10 339 4.95e-54 181
Msa0776540 AT3G19010.4 34.118 340 192 10 33 350 10 339 4.95e-54 181
Msa0776540 AT3G13610.1 32.370 346 215 10 12 348 26 361 4.98e-54 182
Msa0776540 AT4G16330.1 35.907 259 157 4 92 346 3 256 3.14e-53 176
Msa0776540 AT1G55290.1 32.945 343 208 10 13 344 26 357 4.31e-53 179
Msa0776540 AT3G55970.2 34.074 270 166 5 13 270 14 283 5.91e-53 177
Msa0776540 AT1G77330.1 33.333 303 179 6 47 337 3 294 6.53e-53 177
Msa0776540 AT1G12010.1 32.107 299 190 5 46 340 6 295 1.79e-52 176
Msa0776540 AT5G43440.1 31.805 349 220 7 12 348 23 365 9.78e-52 176
Msa0776540 AT1G05010.1 31.373 306 194 6 44 340 1 299 6.15e-51 172
Msa0776540 AT1G62380.1 32.000 300 189 6 46 340 6 295 1.15e-50 172
Msa0776540 AT3G19000.1 35.455 330 188 10 19 329 6 329 1.38e-50 172
Msa0776540 AT3G60290.1 31.519 349 222 9 12 350 15 356 2.36e-50 172
Msa0776540 AT2G44800.1 32.267 344 220 9 12 347 15 353 2.32e-49 169
Msa0776540 AT1G06650.2 31.728 353 207 10 12 343 25 364 2.48e-49 169
Msa0776540 AT3G19010.3 32.822 326 185 10 33 350 10 309 6.62e-49 167
Msa0776540 AT5G59530.1 31.503 346 222 6 13 348 24 364 9.08e-49 168
Msa0776540 AT5G59540.1 31.624 351 216 9 13 348 25 366 9.72e-49 168
Msa0776540 AT1G06620.1 31.792 346 221 8 12 348 26 365 2.38e-48 167
Msa0776540 AT5G08640.2 30.061 326 218 7 10 328 3 325 3.82e-48 166
Msa0776540 AT5G08640.1 30.061 326 218 7 10 328 3 325 3.82e-48 166
Msa0776540 AT1G04380.1 33.117 308 193 6 47 348 45 345 1.36e-47 164
Msa0776540 AT1G15550.1 32.558 301 187 7 47 338 57 350 2.94e-47 164
Msa0776540 AT1G06640.1 32.803 314 187 8 44 343 61 364 5.16e-47 164
Msa0776540 AT5G07480.1 30.915 317 202 7 47 350 44 356 1.44e-46 162
Msa0776540 AT4G25420.1 32.653 294 185 5 24 307 40 330 3.59e-46 161
Msa0776540 AT2G19590.1 31.561 301 186 7 46 341 10 295 6.33e-46 159
Msa0776540 AT5G43450.1 30.792 341 219 8 13 343 24 357 1.06e-45 160
Msa0776540 AT3G12900.1 31.928 332 213 9 24 349 33 357 1.70e-45 159
Msa0776540 AT1G06645.1 32.911 316 181 11 44 343 74 374 7.54e-45 158
Msa0776540 AT5G07200.1 32.476 311 193 6 15 312 28 334 1.33e-44 157
Msa0776540 AT1G04350.1 31.412 347 219 10 13 348 22 360 2.34e-44 156
Msa0776540 AT2G30840.1 31.503 346 215 10 12 343 20 357 3.73e-44 156
Msa0776540 AT2G30830.1 30.145 345 227 8 12 348 20 358 7.89e-44 155
Msa0776540 AT4G21200.1 32.491 277 170 5 46 318 41 304 1.44e-43 154
Msa0776540 AT1G60980.1 32.362 309 187 7 24 316 36 338 2.68e-43 154
Msa0776540 AT3G51240.1 28.904 301 206 4 12 307 5 302 1.01e-42 152
Msa0776540 AT1G80340.1 31.561 301 190 6 47 338 50 343 4.84e-42 150
Msa0776540 AT1G03410.2 28.947 342 218 10 12 337 19 351 9.30e-42 149
Msa0776540 AT1G03410.1 28.947 342 218 10 12 337 56 388 1.28e-41 150
Msa0776540 AT5G51810.1 31.879 298 180 8 23 307 41 328 1.35e-41 149
Msa0776540 AT1G78440.1 30.065 306 189 10 47 338 18 312 1.74e-41 148
Msa0776540 AT1G03400.1 30.904 343 204 13 12 339 19 343 2.00e-41 148
Msa0776540 AT3G61400.1 29.558 362 215 15 12 349 24 369 2.74e-41 148
Msa0776540 AT3G19000.2 35.185 270 150 10 19 269 6 269 4.76e-41 145
Msa0776540 AT5G63590.1 32.404 287 186 5 47 328 14 297 6.61e-41 146
Msa0776540 AT2G30840.3 31.214 346 210 11 12 343 20 351 6.76e-41 147
Msa0776540 AT5G12270.1 29.762 336 224 7 20 348 29 359 5.63e-40 145
Msa0776540 AT4G21690.1 31.230 317 194 7 41 342 42 349 1.43e-39 143
Msa0776540 AT1G80330.1 30.537 298 190 7 46 333 48 338 1.29e-38 141
Msa0776540 AT1G44090.1 29.032 310 200 6 19 315 38 340 6.67e-38 140
Msa0776540 AT3G19010.2 32.061 262 152 8 33 272 10 267 1.20e-37 137
Msa0776540 AT5G63600.1 29.412 306 203 6 42 345 28 322 3.25e-37 136
Msa0776540 AT1G02400.1 33.333 312 186 11 48 349 25 324 7.81e-37 135
Msa0776540 AT2G19590.2 30.545 275 172 6 71 341 21 280 2.60e-36 133
Msa0776540 AT5G63600.2 29.316 307 203 7 42 345 28 323 2.72e-36 134
Msa0776540 AT2G25450.1 29.513 349 225 10 12 348 20 359 5.85e-36 134
Msa0776540 AT1G06650.1 32.258 279 159 8 13 274 26 291 6.44e-36 133
Msa0776540 AT1G03400.2 28.108 370 207 14 12 339 19 371 1.06e-35 134
Msa0776540 AT3G49620.1 33.557 298 170 9 37 307 20 316 1.50e-35 133
Msa0776540 AT4G25420.2 30.739 257 165 5 24 270 40 293 5.90e-35 130
Msa0776540 AT3G50210.4 30.667 300 169 8 41 307 2 295 2.85e-34 129
Msa0776540 AT3G50210.1 30.667 300 169 8 41 307 2 295 2.85e-34 129
Msa0776540 AT3G50210.3 30.667 300 169 8 41 307 2 295 2.85e-34 129
Msa0776540 AT5G43440.2 31.579 266 167 6 12 268 23 282 6.12e-34 127
Msa0776540 AT1G47990.1 27.987 318 197 11 47 347 15 317 7.41e-34 127
Msa0776540 AT1G50960.1 31.010 287 173 8 31 303 20 295 8.68e-34 127
Msa0776540 AT1G06620.2 33.460 263 163 7 12 268 26 282 1.29e-33 126
Msa0776540 AT1G30040.1 27.358 318 210 9 29 337 16 321 1.93e-33 127
Msa0776540 AT1G06640.2 32.941 255 148 7 31 275 51 292 9.89e-33 124
Msa0776540 AT1G06640.3 32.411 253 148 7 27 269 47 286 1.69e-32 123
Msa0776540 AT3G49630.1 31.081 296 172 8 39 307 1 291 2.69e-32 124
Msa0776540 AT5G07480.2 31.100 209 134 4 150 350 41 247 7.41e-32 120
Msa0776540 AT2G34555.1 29.467 319 199 11 28 337 15 316 7.71e-32 122
Msa0776540 AT5G51810.2 30.418 263 160 8 23 272 41 293 8.29e-32 121
Msa0776540 AT1G04380.2 33.333 228 142 5 47 271 45 265 2.22e-31 119
Msa0776540 AT3G51240.2 29.907 214 147 2 96 307 6 218 2.35e-31 119
Msa0776540 AT5G59540.2 30.970 268 166 7 13 269 25 284 6.62e-31 119
Msa0776540 AT2G30840.2 31.343 268 165 8 12 268 20 279 7.15e-31 119
Msa0776540 AT3G49630.3 31.365 271 162 7 56 307 22 287 7.75e-31 119
Msa0776540 AT3G61400.2 30.935 278 159 12 12 269 24 288 1.66e-30 118
Msa0776540 AT5G43935.1 28.082 292 176 9 46 329 18 283 3.18e-30 117
Msa0776540 AT5G63595.1 28.521 284 179 6 30 310 5 267 1.11e-29 115
Msa0776540 AT5G43450.2 30.798 263 168 7 13 268 24 279 1.63e-29 115
Msa0776540 AT3G46500.5 28.435 313 199 12 33 329 6 309 2.81e-28 112
Msa0776540 AT3G47190.1 27.305 282 165 8 47 306 32 295 6.36e-27 109
Msa0776540 AT5G58660.1 26.557 305 182 9 37 305 13 311 8.20e-26 106
Msa0776540 AT3G46500.7 28.269 283 178 12 33 299 6 279 4.08e-24 100
Msa0776540 AT1G14130.1 25.484 310 204 6 47 346 9 301 4.22e-23 98.2
Msa0776540 AT4G23340.1 29.470 302 179 13 46 330 9 293 6.90e-23 97.8
Msa0776540 AT3G50210.2 33.735 166 104 3 148 307 48 213 1.34e-21 92.8
Msa0776540 AT1G30040.2 27.200 250 161 9 29 269 16 253 5.85e-21 91.7
Msa0776540 AT3G49630.2 38.636 132 75 4 203 329 114 244 8.30e-21 90.9
Msa0776540 AT5G51310.1 26.471 306 193 12 46 330 4 298 9.14e-21 92.0
Msa0776540 AT1G14120.2 27.414 321 178 9 47 343 8 297 2.86e-20 90.5
Msa0776540 AT1G14120.1 27.414 321 178 9 47 343 8 297 2.86e-20 90.5
Msa0776540 AT1G14120.3 27.414 321 178 9 47 343 8 297 2.86e-20 90.5
Msa0776540 AT5G63580.2 28.194 227 154 6 47 269 19 240 2.98e-20 89.0
Msa0776540 AT5G63580.1 28.444 225 152 6 47 267 19 238 5.29e-20 88.6
Msa0776540 AT1G35190.1 27.431 288 180 8 66 329 29 311 5.37e-20 89.7
Msa0776540 AT3G46490.1 26.087 299 178 9 66 333 34 320 7.57e-20 89.4
Msa0776540 AT1G02400.2 31.760 233 144 9 48 271 25 251 1.06e-19 87.8
Msa0776540 AT1G52820.1 26.421 299 202 11 46 334 11 301 3.55e-19 87.4
Msa0776540 AT3G46500.10 29.730 185 120 5 153 329 53 235 5.54e-19 85.5
Msa0776540 AT3G46500.1 29.730 185 120 5 153 329 53 235 5.54e-19 85.5
Msa0776540 AT1G35190.2 27.402 281 174 8 66 333 29 292 8.66e-19 86.3
Msa0776540 AT3G46500.4 30.857 175 111 5 163 329 1 173 1.50e-18 82.8
Msa0776540 AT4G22870.1 47.619 84 43 1 238 320 2 85 1.64e-18 80.5
Msa0776540 AT3G46490.2 26.316 285 159 10 66 311 34 306 2.28e-18 85.1
Msa0776540 AT4G16765.6 31.343 201 125 6 144 333 42 240 4.53e-17 80.1
Msa0776540 AT4G16765.1 31.343 201 125 6 144 333 42 240 4.53e-17 80.1
Msa0776540 AT4G16765.2 31.343 201 125 6 144 333 42 240 4.53e-17 80.1
Msa0776540 AT4G22870.2 41.176 102 53 3 226 320 25 126 2.54e-16 75.9
Msa0776540 AT2G06960.1 32.298 161 93 6 177 336 1 146 2.70e-16 75.5
Msa0776540 AT4G23340.2 36.154 130 76 5 206 330 48 175 6.92e-16 75.9
Msa0776540 AT3G46500.3 29.677 155 99 5 153 299 53 205 2.24e-15 74.7
Msa0776540 AT3G46500.6 28.824 170 108 6 141 299 7 174 4.64e-15 73.2
Msa0776540 AT3G46500.8 28.824 170 108 6 141 299 7 174 4.64e-15 73.2
Msa0776540 AT4G16765.5 36.667 120 69 3 219 333 77 194 1.04e-14 72.4
Msa0776540 AT1G52800.1 25.098 255 182 6 69 321 38 285 8.09e-14 71.6
Msa0776540 AT3G46480.1 25.397 252 162 8 96 335 38 275 1.26e-13 70.9
Msa0776540 AT4G16765.3 32.143 168 101 6 144 300 42 207 1.48e-13 70.1
Msa0776540 AT4G03070.1 24.286 280 180 10 69 332 41 304 3.31e-13 70.1
Msa0776540 AT3G46500.2 29.545 132 84 4 153 276 53 183 9.82e-12 63.5
Msa0776540 AT1G28030.1 34.454 119 75 3 215 330 184 302 2.26e-11 64.7
Msa0776540 AT1G80320.1 24.912 285 201 10 74 352 41 318 3.74e-11 63.9

Find 85 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGATGCAGGTCTTTC+AGG 0.141622 5_2:-54575383 None:intergenic
CCTCAACCAGAAAATGTTAT+TGG 0.207405 5_2:+54574795 Msa0776540:CDS
TGGAAGAGAAGAAGAAATTT+TGG 0.275911 5_2:+54574050 Msa0776540:CDS
CGAGGATTCCTTTCATCTAA+TGG 0.295402 5_2:-54574169 None:intergenic
CTGGAGGCCTTCTATCTCAT+TGG 0.331238 5_2:-54574865 None:intergenic
CCAAATCCTTCCATGTCATT+TGG 0.354285 5_2:-54574079 None:intergenic
TTTCCATTGCTGCATTTCAT+AGG 0.363746 5_2:+54575315 Msa0776540:CDS
CAAAATAAAATGTCAAGGTT+TGG 0.372951 5_2:+54573043 None:intergenic
GAGTAGGAAACAAACCTAAA+TGG 0.377754 5_2:-54574214 None:intergenic
CCAAATGACATGGAAGGATT+TGG 0.380420 5_2:+54574079 Msa0776540:CDS
ATCGACCTTGGTAAATTGTT+AGG 0.381623 5_2:+54573199 Msa0776540:CDS
ATGTTGATGACAAATGCATT+AGG 0.394467 5_2:-54574927 None:intergenic
AGACCTTGCTTGTAAAGAAT+GGG 0.400804 5_2:+54573249 Msa0776540:CDS
CTAAATGGTTGGAAAATACT+TGG 0.413891 5_2:-54574199 None:intergenic
GTTGATTGAAAAGGTAAAGA+TGG 0.428723 5_2:+54574000 Msa0776540:CDS
TATTTCTCACGCAAGCTAGA+AGG 0.431799 5_2:+54575437 Msa0776540:CDS
ACATGAGTAGGGTCTTGATT+TGG 0.433810 5_2:-54573142 None:intergenic
GGCCTTCTATCTCATTGGCT+TGG 0.437774 5_2:-54574860 None:intergenic
CTCCAAGCCAATGAGATAGA+AGG 0.438508 5_2:+54574858 Msa0776540:CDS
TTGCTCGATGTTCAATGCTT+CGG 0.438986 5_2:-54575268 None:intergenic
CAGTTAATTCAGAGAAAGAA+AGG 0.449951 5_2:+54575291 Msa0776540:CDS
AATTTACCAAGGTCGATAAC+TGG 0.453044 5_2:-54573193 None:intergenic
GCATTAGGGAGGGGTTGAAC+AGG 0.453363 5_2:-54574912 None:intergenic
CAACACTTCGTTGATTGAAA+AGG 0.453373 5_2:+54573991 Msa0776540:CDS
TAGACCTTGCTTGTAAAGAA+TGG 0.454171 5_2:+54573248 Msa0776540:CDS
TTGCTCTGGAACTTCAATGA+TGG 0.454680 5_2:-54573110 None:intergenic
CATCAACATTGGAGATATGT+TGG 0.457594 5_2:+54574941 Msa0776540:CDS
TGAATGATGCAGGTCTTTCA+GGG 0.467010 5_2:-54575382 None:intergenic
CTTTCAGGGGTAACAAGACT+TGG 0.468383 5_2:-54575368 None:intergenic
AATCATTAGCCAAATGGAAA+AGG 0.476290 5_2:+54574689 Msa0776540:CDS
TTGATTGAAAAGGTAAAGAT+GGG 0.477556 5_2:+54574001 Msa0776540:CDS
TGTTGATGACAAATGCATTA+GGG 0.478792 5_2:-54574926 None:intergenic
TTTGGACGAAGAAATTGCTC+TGG 0.479151 5_2:-54573124 None:intergenic
TCTTCTTCTCTTCCACTGGT+AGG 0.479236 5_2:-54574042 None:intergenic
AGTCTTGTCTTGACGTAATG+AGG 0.481535 5_2:+54575462 Msa0776540:CDS
CTGAATCCTCATTCTGATGT+TGG 0.486800 5_2:+54574819 Msa0776540:CDS
AATTTCTTCTTCTCTTCCAC+TGG 0.489167 5_2:-54574046 None:intergenic
TCATTCAAAGGTATTGCTGT+TGG 0.492628 5_2:+54575398 Msa0776540:CDS
AATGCATTTGTCATCAACAT+TGG 0.503596 5_2:+54574930 Msa0776540:CDS
CTATCTCATTGGCTTGGAGA+AGG 0.505113 5_2:-54574854 None:intergenic
GACGTAATGAGGTTGGAAAA+TGG 0.509343 5_2:+54575473 Msa0776540:CDS
CTGATGATCAGAAATTAGAA+TGG 0.510997 5_2:+54574119 Msa0776540:CDS
GGGGTAACAAGACTTGGTCT+TGG 0.516646 5_2:-54575362 None:intergenic
CTCATTGGCTTGGAGAAGGA+TGG 0.518636 5_2:-54574850 None:intergenic
GCAATACCTTTGAATGATGC+AGG 0.526918 5_2:-54575392 None:intergenic
TGCGTGAGAAATATGCTTTG+AGG 0.529244 5_2:-54575427 None:intergenic
GGCCTCCAGATAAGAAAAGA+TGG 0.530558 5_2:+54574879 Msa0776540:CDS
TGATGATCAGAAATTAGAAT+GGG 0.530679 5_2:+54574120 Msa0776540:CDS
CTAATGGAAGTGTGGTAATG+AGG 0.530737 5_2:-54574153 None:intergenic
TTGTCTTGACGTAATGAGGT+TGG 0.531648 5_2:+54575466 Msa0776540:CDS
AACCCCATTCTTTACAAGCA+AGG 0.534883 5_2:-54573252 None:intergenic
AGGAAACAAACCTAAATGGT+TGG 0.537689 5_2:-54574210 None:intergenic
ACCTCATTGCTTGAGTAATG+TGG 0.546838 5_2:-54574752 None:intergenic
CCACACTTCCATTAGATGAA+AGG 0.547315 5_2:+54574161 Msa0776540:CDS
TTGTGTTGAGCACATGAGTA+GGG 0.549234 5_2:-54573153 None:intergenic
GTATTACAGATAGTGACAAA+TGG 0.550244 5_2:+54575239 Msa0776540:intron
CTTATGCAGATAATCAATCA+TGG 0.550366 5_2:+54573965 Msa0776540:intron
GGCTTGGAGAAGGATGGTTA+AGG 0.567568 5_2:-54574844 None:intergenic
TTTGCAAGCTCGTGCACAGA+AGG 0.571239 5_2:-54573082 None:intergenic
CTTAAAATTGTATTCACATG+AGG 0.572204 5_2:-54575338 None:intergenic
ATGACAAATGCATTAGGGAG+GGG 0.574452 5_2:-54574921 None:intergenic
GATGACAAATGCATTAGGGA+GGG 0.581365 5_2:-54574922 None:intergenic
AAGGTTTGGAACCTCTCGAT+TGG 0.588147 5_2:+54573057 Msa0776540:CDS
GAAAGACCTGCATCATTCAA+AGG 0.591981 5_2:+54575386 Msa0776540:CDS
AGAATTCTTAAGCCTACCAG+TGG 0.596497 5_2:+54574030 Msa0776540:CDS
GACCTTGCTTGTAAAGAATG+GGG 0.599209 5_2:+54573250 Msa0776540:CDS
AGATAAGAAAAGATGGACAA+TGG 0.599638 5_2:+54574886 Msa0776540:CDS
CCTTTCATCTAATGGAAGTG+TGG 0.601777 5_2:-54574161 None:intergenic
CAAGTACCAGTTATCGACCT+TGG 0.604034 5_2:+54573187 Msa0776540:CDS
CAACATTGGAGATATGTTGG+AGG 0.605641 5_2:+54574944 Msa0776540:CDS
TATAACAAAATAAAATGTCA+AGG 0.607650 5_2:+54573038 None:intergenic
AGGCCTATGAAATGCAGCAA+TGG 0.610164 5_2:-54575318 None:intergenic
AAAATACTTGGAAATAAGCG+AGG 0.612315 5_2:-54574187 None:intergenic
TTGGCAAACTCCAAATGACA+TGG 0.613342 5_2:+54574069 Msa0776540:CDS
TTTGTGTTGAGCACATGAGT+AGG 0.618384 5_2:-54573154 None:intergenic
CAAACTCCAAATGACATGGA+AGG 0.624198 5_2:+54574073 Msa0776540:CDS
GAATGATGCAGGTCTTTCAG+GGG 0.634371 5_2:-54575381 None:intergenic
ACCACATTACTCAAGCAATG+AGG 0.637197 5_2:+54574751 Msa0776540:CDS
AAGGCACCAACATCAGAATG+AGG 0.637416 5_2:-54574825 None:intergenic
ACATTACTCAAGCAATGAGG+TGG 0.641618 5_2:+54574754 Msa0776540:CDS
TTTCTGGTTGAGGACATGGA+GGG 0.655452 5_2:-54574785 None:intergenic
TGATGACAAATGCATTAGGG+AGG 0.655981 5_2:-54574923 None:intergenic
CACAGAAGGTACCAATCGAG+AGG 0.663153 5_2:-54573068 None:intergenic
CTTCACCTAACAATTTACCA+AGG 0.680448 5_2:-54573204 None:intergenic
AGGTCGATAACTGGTACTTG+TGG 0.691439 5_2:-54573184 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTCAAAAATAATAAAAAA+TGG - chr5_2:54574508-54574527 None:intergenic 10.0%
!! TAATTTAATAAACTTTGATT+AGG + chr5_2:54575062-54575081 Msa0776540:intron 10.0%
!! ATTTATCTATATGATAATCA+TGG - chr5_2:54573361-54573380 None:intergenic 15.0%
!!! AAATATACAAGTGTTTTTTA+CGG - chr5_2:54573440-54573459 None:intergenic 15.0%
!!! ATAACAAATTTTGATTAATC+TGG - chr5_2:54574428-54574447 None:intergenic 15.0%
!!! TTTAATTTAAAGATTAAGGT+AGG - chr5_2:54575217-54575236 None:intergenic 15.0%
!! ACCTTAATCTTTAAATTAAA+TGG + chr5_2:54575217-54575236 Msa0776540:intron 15.0%
!!! ACCATTTAATTTAAAGATTA+AGG - chr5_2:54575221-54575240 None:intergenic 15.0%
!! GATTAATAATAATTCAAACC+TGG - chr5_2:54573282-54573301 None:intergenic 20.0%
!! TATGTAAGTTGCAAAATAAA+TGG + chr5_2:54573333-54573352 Msa0776540:intron 20.0%
!!! TTTAATTTGTAACACATCAT+TGG + chr5_2:54573695-54573714 Msa0776540:intron 20.0%
!! TATAGATACAAGTTAATGAA+GGG + chr5_2:54573897-54573916 Msa0776540:intron 20.0%
!!! TGCAAAATTTGTCTAAAATT+CGG - chr5_2:54574539-54574558 None:intergenic 20.0%
!!! ATTCAATCATTTTGTTCTAA+AGG - chr5_2:54574570-54574589 None:intergenic 20.0%
!! ATATCTCATTAATTCAACTT+TGG + chr5_2:54575155-54575174 Msa0776540:intron 20.0%
! CAATAAGTTGTGATATATGT+TGG + chr5_2:54573584-54573603 Msa0776540:intron 25.0%
! CTATAGATACAAGTTAATGA+AGG + chr5_2:54573896-54573915 Msa0776540:intron 25.0%
! TTGATTGAAAAGGTAAAGAT+GGG + chr5_2:54574001-54574020 Msa0776540:CDS 25.0%
! TGATGATCAGAAATTAGAAT+GGG + chr5_2:54574120-54574139 Msa0776540:CDS 25.0%
! AAAATGTGTTCAATACAATG+TGG + chr5_2:54574315-54574334 Msa0776540:intron 25.0%
! GAAATAACAACAGAAATTAG+AGG + chr5_2:54574459-54574478 Msa0776540:intron 25.0%
! CACTAATTAACAAATTGACA+TGG + chr5_2:54574605-54574624 Msa0776540:intron 25.0%
!! TTTTACAATCATTAGCCAAA+TGG + chr5_2:54574683-54574702 Msa0776540:CDS 25.0%
! AACTAACTAACTTTGATTGA+AGG + chr5_2:54575088-54575107 Msa0776540:intron 25.0%
! CTTAAAATTGTATTCACATG+AGG - chr5_2:54575341-54575360 None:intergenic 25.0%
!!! TTTTGAAACAACCATAGTCT+TGG - chr5_2:54573816-54573835 None:intergenic 30.0%
TTATGAATATGCCATTCAAC+AGG + chr5_2:54573843-54573862 Msa0776540:intron 30.0%
ATCAAGTTCGTGAAGAAAAA+TGG - chr5_2:54573925-54573944 None:intergenic 30.0%
CTTATGCAGATAATCAATCA+TGG + chr5_2:54573965-54573984 Msa0776540:intron 30.0%
GTTGATTGAAAAGGTAAAGA+TGG + chr5_2:54574000-54574019 Msa0776540:CDS 30.0%
! TGGAAGAGAAGAAGAAATTT+TGG + chr5_2:54574050-54574069 Msa0776540:CDS 30.0%
CTGATGATCAGAAATTAGAA+TGG + chr5_2:54574119-54574138 Msa0776540:CDS 30.0%
AAAATACTTGGAAATAAGCG+AGG - chr5_2:54574190-54574209 None:intergenic 30.0%
CTAAATGGTTGGAAAATACT+TGG - chr5_2:54574202-54574221 None:intergenic 30.0%
! CAAGTATTTTCCAACCATTT+AGG + chr5_2:54574200-54574219 Msa0776540:CDS 30.0%
ACATCAATTATTGAGAGAGT+AGG - chr5_2:54574233-54574252 None:intergenic 30.0%
!!! CAATCATTTTGTTCTAAAGG+TGG - chr5_2:54574567-54574586 None:intergenic 30.0%
AATCATTAGCCAAATGGAAA+AGG + chr5_2:54574689-54574708 Msa0776540:CDS 30.0%
! TTCAGTCCAATAACATTTTC+TGG - chr5_2:54574804-54574823 None:intergenic 30.0%
! ATTGTCCATCTTTTCTTATC+TGG - chr5_2:54574887-54574906 None:intergenic 30.0%
AGATAAGAAAAGATGGACAA+TGG + chr5_2:54574886-54574905 Msa0776540:CDS 30.0%
!! TGTTGATGACAAATGCATTA+GGG - chr5_2:54574929-54574948 None:intergenic 30.0%
!! ATGTTGATGACAAATGCATT+AGG - chr5_2:54574930-54574949 None:intergenic 30.0%
AATGCATTTGTCATCAACAT+TGG + chr5_2:54574930-54574949 Msa0776540:CDS 30.0%
GTATTACAGATAGTGACAAA+TGG + chr5_2:54575239-54575258 Msa0776540:intron 30.0%
CAGTTAATTCAGAGAAAGAA+AGG + chr5_2:54575291-54575310 Msa0776540:CDS 30.0%
AATTTACCAAGGTCGATAAC+TGG - chr5_2:54573196-54573215 None:intergenic 35.0%
ATCGACCTTGGTAAATTGTT+AGG + chr5_2:54573199-54573218 Msa0776540:CDS 35.0%
CTTCACCTAACAATTTACCA+AGG - chr5_2:54573207-54573226 None:intergenic 35.0%
TAGACCTTGCTTGTAAAGAA+TGG + chr5_2:54573248-54573267 Msa0776540:CDS 35.0%
AGACCTTGCTTGTAAAGAAT+GGG + chr5_2:54573249-54573268 Msa0776540:CDS 35.0%
!!! TAAAGAATGGGGTTTTTTCC+AGG + chr5_2:54573261-54573280 Msa0776540:CDS 35.0%
GTATAAACTCGCATGTTGAA+CGG + chr5_2:54573536-54573555 Msa0776540:intron 35.0%
TCACAACTTATTGTCATTCG+TGG - chr5_2:54573577-54573596 None:intergenic 35.0%
! TAATTGTGTTGACCAATGCA+GGG - chr5_2:54573620-54573639 None:intergenic 35.0%
! TTAATTGTGTTGACCAATGC+AGG - chr5_2:54573621-54573640 None:intergenic 35.0%
TGATATTTGTGTATGCTGAG+TGG - chr5_2:54573874-54573893 None:intergenic 35.0%
! CAACACTTCGTTGATTGAAA+AGG + chr5_2:54573991-54574010 Msa0776540:CDS 35.0%
AATTTCTTCTTCTCTTCCAC+TGG - chr5_2:54574049-54574068 None:intergenic 35.0%
AGGAAACAAACCTAAATGGT+TGG - chr5_2:54574213-54574232 None:intergenic 35.0%
GAGTAGGAAACAAACCTAAA+TGG - chr5_2:54574217-54574236 None:intergenic 35.0%
ATGTGTTCAATACAATGTGG+TGG + chr5_2:54574318-54574337 Msa0776540:intron 35.0%
!!! CCAATAACATTTTCTGGTTG+AGG - chr5_2:54574798-54574817 None:intergenic 35.0%
CCTCAACCAGAAAATGTTAT+TGG + chr5_2:54574795-54574814 Msa0776540:CDS 35.0%
CATCAACATTGGAGATATGT+TGG + chr5_2:54574941-54574960 Msa0776540:CDS 35.0%
TTTCCATTGCTGCATTTCAT+AGG + chr5_2:54575315-54575334 Msa0776540:CDS 35.0%
!! TCATTCAAAGGTATTGCTGT+TGG + chr5_2:54575398-54575417 Msa0776540:CDS 35.0%
!! TTGCTCTGGAACTTCAATGA+TGG - chr5_2:54573113-54573132 None:intergenic 40.0%
TTTGGACGAAGAAATTGCTC+TGG - chr5_2:54573127-54573146 None:intergenic 40.0%
ACATGAGTAGGGTCTTGATT+TGG - chr5_2:54573145-54573164 None:intergenic 40.0%
TTGTGTTGAGCACATGAGTA+GGG - chr5_2:54573156-54573175 None:intergenic 40.0%
TTTGTGTTGAGCACATGAGT+AGG - chr5_2:54573157-54573176 None:intergenic 40.0%
GACCTTGCTTGTAAAGAATG+GGG + chr5_2:54573250-54573269 Msa0776540:CDS 40.0%
AACCCCATTCTTTACAAGCA+AGG - chr5_2:54573255-54573274 None:intergenic 40.0%
!! TTATACAGAGCGGGTTAAAC+TGG - chr5_2:54573522-54573541 None:intergenic 40.0%
ACATGCGAGTTTATACAGAG+CGG - chr5_2:54573532-54573551 None:intergenic 40.0%
!! ACACTGATTTGCCAAGACTA+TGG + chr5_2:54573802-54573821 Msa0776540:intron 40.0%
AGAATTCTTAAGCCTACCAG+TGG + chr5_2:54574030-54574049 Msa0776540:CDS 40.0%
TTGGCAAACTCCAAATGACA+TGG + chr5_2:54574069-54574088 Msa0776540:CDS 40.0%
CAAACTCCAAATGACATGGA+AGG + chr5_2:54574073-54574092 Msa0776540:CDS 40.0%
CCAAATCCTTCCATGTCATT+TGG - chr5_2:54574082-54574101 None:intergenic 40.0%
CCAAATGACATGGAAGGATT+TGG + chr5_2:54574079-54574098 Msa0776540:CDS 40.0%
! CTAATGGAAGTGTGGTAATG+AGG - chr5_2:54574156-54574175 None:intergenic 40.0%
CCTTTCATCTAATGGAAGTG+TGG - chr5_2:54574164-54574183 None:intergenic 40.0%
CCACACTTCCATTAGATGAA+AGG + chr5_2:54574161-54574180 Msa0776540:CDS 40.0%
CGAGGATTCCTTTCATCTAA+TGG - chr5_2:54574172-54574191 None:intergenic 40.0%
TGTTCAATACAATGTGGTGG+AGG + chr5_2:54574321-54574340 Msa0776540:intron 40.0%
CTTTGCCCATGAATTAGCAA+AGG - chr5_2:54574382-54574401 None:intergenic 40.0%
CTTTGCTAATTCATGGGCAA+AGG + chr5_2:54574380-54574399 Msa0776540:intron 40.0%
! TCTTGAGAGCCTTTTCCATT+TGG - chr5_2:54574701-54574720 None:intergenic 40.0%
ACCACATTACTCAAGCAATG+AGG + chr5_2:54574751-54574770 Msa0776540:CDS 40.0%
ACCTCATTGCTTGAGTAATG+TGG - chr5_2:54574755-54574774 None:intergenic 40.0%
ACATTACTCAAGCAATGAGG+TGG + chr5_2:54574754-54574773 Msa0776540:CDS 40.0%
!!! ACATTTTCTGGTTGAGGACA+TGG - chr5_2:54574792-54574811 None:intergenic 40.0%
CTGAATCCTCATTCTGATGT+TGG + chr5_2:54574819-54574838 Msa0776540:CDS 40.0%
! GTCCATCTTTTCTTATCTGG+AGG - chr5_2:54574884-54574903 None:intergenic 40.0%
ATGACAAATGCATTAGGGAG+GGG - chr5_2:54574924-54574943 None:intergenic 40.0%
GATGACAAATGCATTAGGGA+GGG - chr5_2:54574925-54574944 None:intergenic 40.0%
TGATGACAAATGCATTAGGG+AGG - chr5_2:54574926-54574945 None:intergenic 40.0%
CAACATTGGAGATATGTTGG+AGG + chr5_2:54574944-54574963 Msa0776540:CDS 40.0%
GGAGATATGTTGGAGGTAAT+TGG + chr5_2:54574951-54574970 Msa0776540:intron 40.0%
TTGCTCGATGTTCAATGCTT+CGG - chr5_2:54575271-54575290 None:intergenic 40.0%
TGAATGATGCAGGTCTTTCA+GGG - chr5_2:54575385-54575404 None:intergenic 40.0%
TTGAATGATGCAGGTCTTTC+AGG - chr5_2:54575386-54575405 None:intergenic 40.0%
GAAAGACCTGCATCATTCAA+AGG + chr5_2:54575386-54575405 Msa0776540:CDS 40.0%
GCAATACCTTTGAATGATGC+AGG - chr5_2:54575395-54575414 None:intergenic 40.0%
TGCGTGAGAAATATGCTTTG+AGG - chr5_2:54575430-54575449 None:intergenic 40.0%
TATTTCTCACGCAAGCTAGA+AGG + chr5_2:54575437-54575456 Msa0776540:CDS 40.0%
! AGTCTTGTCTTGACGTAATG+AGG + chr5_2:54575462-54575481 Msa0776540:CDS 40.0%
TTGTCTTGACGTAATGAGGT+TGG + chr5_2:54575466-54575485 Msa0776540:CDS 40.0%
GACGTAATGAGGTTGGAAAA+TGG + chr5_2:54575473-54575492 Msa0776540:CDS 40.0%
! AAGGTTTGGAACCTCTCGAT+TGG + chr5_2:54573057-54573076 Msa0776540:CDS 45.0%
AGGTCGATAACTGGTACTTG+TGG - chr5_2:54573187-54573206 None:intergenic 45.0%
CAAGTACCAGTTATCGACCT+TGG + chr5_2:54573187-54573206 Msa0776540:CDS 45.0%
CATGCGAGTTTATACAGAGC+GGG - chr5_2:54573531-54573550 None:intergenic 45.0%
GAGTGGACAAACCTGTTGAA+TGG - chr5_2:54573857-54573876 None:intergenic 45.0%
TCTTCTTCTCTTCCACTGGT+AGG - chr5_2:54574045-54574064 None:intergenic 45.0%
CTGGAAACTAACTCCTAACG+TGG + chr5_2:54574353-54574372 Msa0776540:intron 45.0%
TGCCCATGAATTAGCAAAGG+CGG - chr5_2:54574379-54574398 None:intergenic 45.0%
TGCTAATTCATGGGCAAAGG+CGG + chr5_2:54574383-54574402 Msa0776540:intron 45.0%
CTGGAAACAAAGTCGTAACG+TGG - chr5_2:54574409-54574428 None:intergenic 45.0%
!! TTTCTGGTTGAGGACATGGA+GGG - chr5_2:54574788-54574807 None:intergenic 45.0%
!!! TTTTCTGGTTGAGGACATGG+AGG - chr5_2:54574789-54574808 None:intergenic 45.0%
! AAGGCACCAACATCAGAATG+AGG - chr5_2:54574828-54574847 None:intergenic 45.0%
!! CTATCTCATTGGCTTGGAGA+AGG - chr5_2:54574857-54574876 None:intergenic 45.0%
CTCCAAGCCAATGAGATAGA+AGG + chr5_2:54574858-54574877 Msa0776540:CDS 45.0%
GGCCTCCAGATAAGAAAAGA+TGG + chr5_2:54574879-54574898 Msa0776540:CDS 45.0%
AGGCCTATGAAATGCAGCAA+TGG - chr5_2:54575321-54575340 None:intergenic 45.0%
CTTTCAGGGGTAACAAGACT+TGG - chr5_2:54575371-54575390 None:intergenic 45.0%
GAATGATGCAGGTCTTTCAG+GGG - chr5_2:54575384-54575403 None:intergenic 45.0%
!! CACAGAAGGTACCAATCGAG+AGG - chr5_2:54573071-54573090 None:intergenic 50.0%
TTTGCAAGCTCGTGCACAGA+AGG - chr5_2:54573085-54573104 None:intergenic 50.0%
TGGCCGCCTTTGCTAATTCA+TGG + chr5_2:54574373-54574392 Msa0776540:intron 50.0%
GGCCGCCTTTGCTAATTCAT+GGG + chr5_2:54574374-54574393 Msa0776540:intron 50.0%
GGCTTGGAGAAGGATGGTTA+AGG - chr5_2:54574847-54574866 None:intergenic 50.0%
!! CTCATTGGCTTGGAGAAGGA+TGG - chr5_2:54574853-54574872 None:intergenic 50.0%
! GGCCTTCTATCTCATTGGCT+TGG - chr5_2:54574863-54574882 None:intergenic 50.0%
CTGGAGGCCTTCTATCTCAT+TGG - chr5_2:54574868-54574887 None:intergenic 50.0%
! GGGGTAACAAGACTTGGTCT+TGG - chr5_2:54575365-54575384 None:intergenic 50.0%
! GTGGTGGAGGAAGCACAATC+TGG + chr5_2:54574334-54574353 Msa0776540:intron 55.0%
TTAGCAAAGGCGGCCACGTT+AGG - chr5_2:54574369-54574388 None:intergenic 55.0%
GCATTAGGGAGGGGTTGAAC+AGG - chr5_2:54574915-54574934 None:intergenic 55.0%
GGTCTGAGTCTGCCCTGCAT+TGG + chr5_2:54573605-54573624 Msa0776540:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 54573052 54575508 54573052 ID=Msa0776540;Name=Msa0776540
chr5_2 mRNA 54573052 54575508 54573052 ID=Msa0776540-mRNA-1;Parent=Msa0776540;Name=Msa0776540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|354
chr5_2 exon 54573052 54573282 54573052 ID=Msa0776540-mRNA-1:exon:16260;Parent=Msa0776540-mRNA-1
chr5_2 exon 54573974 54574221 54573974 ID=Msa0776540-mRNA-1:exon:16261;Parent=Msa0776540-mRNA-1
chr5_2 exon 54574641 54574965 54574641 ID=Msa0776540-mRNA-1:exon:16262;Parent=Msa0776540-mRNA-1
chr5_2 exon 54575248 54575508 54575248 ID=Msa0776540-mRNA-1:exon:16263;Parent=Msa0776540-mRNA-1
chr5_2 CDS 54573052 54573282 54573052 ID=Msa0776540-mRNA-1:cds;Parent=Msa0776540-mRNA-1
chr5_2 CDS 54573974 54574221 54573974 ID=Msa0776540-mRNA-1:cds;Parent=Msa0776540-mRNA-1
chr5_2 CDS 54574641 54574965 54574641 ID=Msa0776540-mRNA-1:cds;Parent=Msa0776540-mRNA-1
chr5_2 CDS 54575248 54575508 54575248 ID=Msa0776540-mRNA-1:cds;Parent=Msa0776540-mRNA-1
Gene Sequence

>Msa0776540

ATGTCAAGGTTTGGAACCTCTCGATTGGTACCTTCTGTGCACGAGCTTGCAAAGCAAACCATCATTGAAGTTCCAGAGCAATTTCTTCGTCCAAATCAAGACCCTACTCATGTGCTCAACACAAACTCATTACCACAAGTACCAGTTATCGACCTTGGTAAATTGTTAGGTGAAGATGCAACTGAGCTAGAGAAGCTAGACCTTGCTTGTAAAGAATGGGGTTTTTTCCAGATAATCAATCATGGAGTCAACACTTCGTTGATTGAAAAGGTAAAGATGGGTATTAAAGAATTCTTAAGCCTACCAGTGGAAGAGAAGAAGAAATTTTGGCAAACTCCAAATGACATGGAAGGATTTGGTCAGATGTTTGTTGTCTCTGATGATCAGAAATTAGAATGGGCTGATCTTTTCCTCATTACCACACTTCCATTAGATGAAAGGAATCCTCGCTTATTTCCAAGTATTTTCCAACCATTTAGAGATGATTTAGAGATCTATTGTTCAGAAGTACAAAAACTTTGTTTTACAATCATTAGCCAAATGGAAAAGGCTCTCAAGATTGAATCAAATGAAGTAACAGAATTATTTAACCACATTACTCAAGCAATGAGGTGGAATTTGTACCCTCCATGTCCTCAACCAGAAAATGTTATTGGACTGAATCCTCATTCTGATGTTGGTGCCTTAACCATCCTTCTCCAAGCCAATGAGATAGAAGGCCTCCAGATAAGAAAAGATGGACAATGGATTCCTGTTCAACCCCTCCCTAATGCATTTGTCATCAACATTGGAGATATGTTGGAGATAGTGACAAATGGAATATACCGAAGCATTGAACATCGAGCAACAGTTAATTCAGAGAAAGAAAGGATTTCCATTGCTGCATTTCATAGGCCTCATGTGAATACAATTTTAAGTCCAAGACCAAGTCTTGTTACCCCTGAAAGACCTGCATCATTCAAAGGTATTGCTGTTGGAGATTACCTCAAAGCATATTTCTCACGCAAGCTAGAAGGAAAGTCTTGTCTTGACGTAATGAGGTTGGAAAATGGTGTTAAAAACTGA

Protein sequence

>Msa0776540

MSRFGTSRLVPSVHELAKQTIIEVPEQFLRPNQDPTHVLNTNSLPQVPVIDLGKLLGEDATELEKLDLACKEWGFFQIINHGVNTSLIEKVKMGIKEFLSLPVEEKKKFWQTPNDMEGFGQMFVVSDDQKLEWADLFLITTLPLDERNPRLFPSIFQPFRDDLEIYCSEVQKLCFTIISQMEKALKIESNEVTELFNHITQAMRWNLYPPCPQPENVIGLNPHSDVGALTILLQANEIEGLQIRKDGQWIPVQPLPNAFVINIGDMLEIVTNGIYRSIEHRATVNSEKERISIAAFHRPHVNTILSPRPSLVTPERPASFKGIAVGDYLKAYFSRKLEGKSCLDVMRLENGVKN*