AlfalfaGEDB | Msa0728520

M. sativa cultivar zhongmu-4 / Msa0728520

KEGG: -
GO: GO:0003674 GO:0003824 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0010150 GO:0016491 GO:0016679 GO:0016682 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0055114 GO:0090693 GO:0099402
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0728520	XP_013453855.1	97.429	350	9	0	1	350	1	350	0.0	707

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0728520	sp\|Q39224\|SRG1_ARATH	53.295	349	157	4	6	348	10	358	1.13e-135	393

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0728520	A0A072UER0	97.429	350	9	0	1	350	1	350	0.0	707

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004940	Msa0728520	0.840136	1.042524e-57	-8.615850e-47
Msa0004990	Msa0728520	0.822175	2.725725e-53	-8.615850e-47
Msa0010150	Msa0728520	0.802355	5.834409e-49	-8.615850e-47
Msa0011010	Msa0728520	0.804153	2.476647e-49	-8.615850e-47
Msa0011040	Msa0728520	0.806021	1.006742e-49	-8.615850e-47
Msa0016830	Msa0728520	-0.805962	1.035942e-49	-8.615850e-47
Msa0030710	Msa0728520	-0.807790	4.254504e-50	-8.615850e-47
Msa0031650	Msa0728520	0.860439	2.064261e-63	-8.615850e-47
Msa0034800	Msa0728520	-0.824566	7.530496e-54	-8.615850e-47
Msa0038010	Msa0728520	0.809612	1.736139e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0728520	MtrunA17_Chr5g0421011	97.429	350	9	0	1	350	1	350	0.0	707
Msa0728520	MtrunA17_Chr5g0423191	73.429	350	93	0	1	350	1	350	0.0	540
Msa0728520	MtrunA17_Chr5g0421041	71.714	350	97	1	1	350	1	348	0.0	528
Msa0728520	MtrunA17_Chr5g0423251	71.347	349	100	0	1	349	1	349	0.0	528
Msa0728520	MtrunA17_Chr5g0421101	66.761	352	117	0	1	352	1	352	6.38e-180	502
Msa0728520	MtrunA17_Chr5g0423221	67.429	350	113	1	1	349	25	374	1.55e-179	502
Msa0728520	MtrunA17_Chr5g0423201	68.000	350	111	1	1	349	1	350	1.58e-178	499
Msa0728520	MtrunA17_Chr5g0420951	67.898	352	111	2	1	350	6	357	4.36e-174	488
Msa0728520	MtrunA17_Chr8g0365241	67.806	351	112	1	1	350	11	361	9.78e-172	482
Msa0728520	MtrunA17_Chr5g0420941	63.037	349	129	0	6	354	4	352	1.99e-165	466

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0728520	AT1G17020.1	53.295	349	157	4	6	348	10	358	1.15e-136	393
Msa0728520	AT1G17010.1	51.567	351	164	4	6	350	10	360	1.82e-129	375
Msa0728520	AT4G25300.1	50.000	348	169	4	6	348	9	356	1.21e-126	367
Msa0728520	AT1G78550.1	47.550	347	178	3	6	348	10	356	4.91e-124	361
Msa0728520	AT4G25310.1	48.563	348	171	4	6	348	9	353	4.59e-120	351
Msa0728520	AT1G78550.2	48.399	281	141	1	68	348	2	278	8.47e-104	306
Msa0728520	AT4G25310.2	44.380	347	159	4	6	348	9	325	4.85e-101	301
Msa0728520	AT3G21420.1	42.735	351	191	5	10	350	14	364	6.38e-93	282
Msa0728520	AT2G38240.1	37.135	342	209	4	12	348	11	351	2.15e-82	254
Msa0728520	AT5G05600.1	33.628	339	218	3	13	344	27	365	3.87e-71	226

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Find 85 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTTGGAAATAAGCG+AGG	0.612315	5_1:-33225960	None:intergenic
AACCCCATTCTTTACAAGCA+AGG	0.534883	5_1:-33225025	None:intergenic
AAGGCACCAACATCAGAATG+AGG	0.637416	5_1:-33226597	None:intergenic
AAGGTTTGGAACCTCTCGAT+TGG	0.588147	5_1:+33224830	Msa0728520:CDS
AATCATTAGCCAAATGGAAA+AGG	0.476290	5_1:+33226461	Msa0728520:CDS
AATGCATTTGTCATCAACAT+TGG	0.503596	5_1:+33226702	Msa0728520:CDS
AATTTACCAAGGTCGATAAC+TGG	0.453044	5_1:-33224966	None:intergenic
AATTTCTTCTTCTCTTCCAC+TGG	0.489167	5_1:-33225819	None:intergenic
ACATGAGTAGGGTCTTGATT+TGG	0.433810	5_1:-33224915	None:intergenic
ACATTACTCAAGCAATGAGG+TGG	0.641618	5_1:+33226526	Msa0728520:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATGAATATGCCATTCAAC+AGG	+	chr5_1:33225616-33225635	Msa0728520:intron	30.0%
ATCAAGTTCGTGAAGAAAAA+TGG	-	chr5_1:33225698-33225717	None:intergenic	30.0%
CTTATGCAGATAATCAATCA+TGG	+	chr5_1:33225738-33225757	Msa0728520:intron	30.0%
GTTGATTGAAAAGGTAAAGA+TGG	+	chr5_1:33225773-33225792	Msa0728520:CDS	30.0%
CTGATGATCAGAAATTAGAA+TGG	+	chr5_1:33225892-33225911	Msa0728520:CDS	30.0%
AAAATACTTGGAAATAAGCG+AGG	-	chr5_1:33225963-33225982	None:intergenic	30.0%
CTAAATGGTTGGAAAATACT+TGG	-	chr5_1:33225975-33225994	None:intergenic	30.0%
ACATCAATTATTGAGAGAGT+AGG	-	chr5_1:33226006-33226025	None:intergenic	30.0%
AATCATTAGCCAAATGGAAA+AGG	+	chr5_1:33226461-33226480	Msa0728520:CDS	30.0%
AGATAAGAAAAGATGGACAA+TGG	+	chr5_1:33226658-33226677	Msa0728520:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	33224825	33227277	33224825	ID=Msa0728520;Name=Msa0728520
chr5_1	mRNA	33224825	33227277	33224825	ID=Msa0728520-mRNA-1;Parent=Msa0728520;Name=Msa0728520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|1\|1\|4\|0\|354
chr5_1	exon	33224825	33225055	33224825	ID=Msa0728520-mRNA-1:exon:10666;Parent=Msa0728520-mRNA-1
chr5_1	exon	33225747	33225994	33225747	ID=Msa0728520-mRNA-1:exon:10667;Parent=Msa0728520-mRNA-1
chr5_1	exon	33226413	33226737	33226413	ID=Msa0728520-mRNA-1:exon:10668;Parent=Msa0728520-mRNA-1
chr5_1	exon	33227017	33227277	33227017	ID=Msa0728520-mRNA-1:exon:10669;Parent=Msa0728520-mRNA-1
chr5_1	CDS	33224825	33225055	33224825	ID=Msa0728520-mRNA-1:cds;Parent=Msa0728520-mRNA-1
chr5_1	CDS	33225747	33225994	33225747	ID=Msa0728520-mRNA-1:cds;Parent=Msa0728520-mRNA-1
chr5_1	CDS	33226413	33226737	33226413	ID=Msa0728520-mRNA-1:cds;Parent=Msa0728520-mRNA-1
chr5_1	CDS	33227017	33227277	33227017	ID=Msa0728520-mRNA-1:cds;Parent=Msa0728520-mRNA-1

Gene Sequence

>Msa0728520

ATGTCAAGGTTTGGAACCTCTCGATTGGTACCTTCTGTGCACGAGCTTGCAAAGCAAACCATCATTGAAGTTCCAGAGCAATTTCTTCGTCCAAATCAAGACCCTACTCATGTGCTCAACACAAACTCATTACCACAAGTACCAGTTATCGACCTTGGTAAATTGTTAGGTGAAGATGCAACTGAGCTAGAGAAGCTAGACCTTGCTTGTAAAGAATGGGGTTTTTTCCAGATAATCAATCATGGAGTCAACACTTCGTTGATTGAAAAGGTAAAGATGGGTATTAAAGAATTCTTAAGCCTACCAGTGGAAGAGAAGAAGAAATTTTGGCAAACTCCAAATGACATGGAAGGATTTGGTCAGATGTTTGTTGTCTCTGATGATCAGAAATTAGAATGGGCTGATCTTTTCCTCATTACCACACTTCCATTAGATGAAAGGAATCCTCGCTTATTTCCAAGTATTTTCCAACCATTTAGAGATGATTTAGAGATCTATTGTTCAGAAGTACAAAAACTTTGTTTTACAATCATTAGCCAAATGGAAAAGGCTCTCAAGATTGAATCAAATGAAGTAACAGAATTATTTAACCACATTACTCAAGCAATGAGGTGGAATTTGTACCCTCCATGTCCTCAACCAGAAAATGTTATTGGACTGAATCCTCATTCTGATGTTGGTGCCTTAACCATCCTTCTCCAAGCCAATGAGATAGAAGGCCTCCAGATAAGAAAAGATGGACAATGGATTCCTGTTCAACCCCTCCCTAATGCATTTGTCATCAACATTGGAGATATGTTGGAGATAGTGACAAATGGAATATACCGAAGCATTGAACATCGAGCAACAGTTAATTCAGAGAAAGAAAGGATTTCCATTGCTGCATTTCATAGGCCTCATGTGAATACAATTTTAAGTCCAAGACCAAGTCTTGTTACCCCTGAAAGACCTGCATCATTCAAAGGTATTGCTGTTGGAGATTACCTCAAAGCATATTTCTCACGCAAGCTAGAAGGAAAGTCTTGTCTTGACGTAATGAGGTTGGAAAATGGTGTTAAAAACTGA

Protein sequence

>Msa0728520

MSRFGTSRLVPSVHELAKQTIIEVPEQFLRPNQDPTHVLNTNSLPQVPVIDLGKLLGEDATELEKLDLACKEWGFFQIINHGVNTSLIEKVKMGIKEFLSLPVEEKKKFWQTPNDMEGFGQMFVVSDDQKLEWADLFLITTLPLDERNPRLFPSIFQPFRDDLEIYCSEVQKLCFTIISQMEKALKIESNEVTELFNHITQAMRWNLYPPCPQPENVIGLNPHSDVGALTILLQANEIEGLQIRKDGQWIPVQPLPNAFVINIGDMLEIVTNGIYRSIEHRATVNSEKERISIAAFHRPHVNTILSPRPSLVTPERPASFKGIAVGDYLKAYFSRKLEGKSCLDVMRLENGVKN*