AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0987550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0987550 MtrunA17_Chr6g0467121 95.170 352 17 0 1 352 33 384 0.0 689
Msa0987550 MtrunA17_Chr6g0467161 69.139 337 97 3 1 331 1 336 9.36e-168 471
Msa0987550 MtrunA17_Chr6g0467251 55.882 340 141 2 1 337 1 334 1.30e-131 379
Msa0987550 MtrunA17_Chr2g0292211 46.201 329 154 9 37 346 35 359 6.55e-83 256
Msa0987550 MtrunA17_Chr2g0292241 46.483 327 149 9 42 346 29 351 2.91e-81 251
Msa0987550 MtrunA17_Chr2g0292251 43.902 328 160 10 42 349 28 351 3.59e-78 243
Msa0987550 MtrunA17_Chr5g0402581 44.625 307 158 4 36 331 21 326 3.68e-78 243
Msa0987550 MtrunA17_Chr2g0292101 41.618 346 179 7 14 346 6 341 8.37e-78 242
Msa0987550 MtrunA17_Chr5g0402571 42.997 307 163 4 36 331 21 326 2.39e-76 238
Msa0987550 MtrunA17_Chr2g0292091 43.210 324 159 9 23 332 14 326 1.81e-75 236
Msa0987550 MtrunA17_Chr2g0292151 43.302 321 165 8 42 347 29 347 9.90e-75 234
Msa0987550 MtrunA17_Chr1g0188431 41.017 295 163 6 42 331 39 327 2.94e-74 233
Msa0987550 MtrunA17_Chr4g0070951 42.951 305 156 8 42 331 28 329 3.73e-73 230
Msa0987550 MtrunA17_Chr4g0046131 36.919 344 202 5 1 329 1 344 1.87e-72 228
Msa0987550 MtrunA17_Chr2g0292271 43.218 317 164 8 42 344 29 343 1.97e-72 229
Msa0987550 MtrunA17_Chr2g0292181 43.492 315 160 8 42 342 38 348 3.34e-72 228
Msa0987550 MtrunA17_Chr2g0292111 44.590 305 151 8 46 336 33 333 4.84e-72 228
Msa0987550 MtrunA17_Chr5g0405991 40.728 302 163 6 40 331 21 316 7.27e-72 226
Msa0987550 MtrunA17_Chr1g0175561 41.639 305 163 6 42 332 24 327 1.39e-71 226
Msa0987550 MtrunA17_Chr6g0477071 38.644 295 172 4 41 331 53 342 1.90e-71 226
Msa0987550 MtrunA17_Chr8g0371381 40.000 300 164 6 42 331 26 319 2.34e-71 225
Msa0987550 MtrunA17_Chr2g0292261 44.737 304 154 8 42 332 29 331 2.80e-71 226
Msa0987550 MtrunA17_Chr2g0320071 41.438 292 164 5 45 331 28 317 3.82e-71 224
Msa0987550 MtrunA17_Chr2g0291751 44.079 304 154 7 46 336 33 333 3.99e-71 225
Msa0987550 MtrunA17_Chr4g0075241 40.523 306 167 6 39 331 24 327 3.04e-70 222
Msa0987550 MtrunA17_Chr3g0128061 40.923 325 170 8 20 331 11 326 1.45e-69 220
Msa0987550 MtrunA17_Chr4g0053871 42.088 297 164 5 42 330 27 323 1.74e-69 220
Msa0987550 MtrunA17_Chr7g0254231 38.832 291 176 2 42 331 22 311 2.09e-69 219
Msa0987550 MtrunA17_Chr7g0258811 38.690 336 179 7 11 332 50 372 2.43e-69 221
Msa0987550 MtrunA17_Chr2g0320101 41.096 292 165 5 45 331 28 317 3.11e-69 219
Msa0987550 MtrunA17_Chr5g0401431 38.671 331 181 8 14 330 6 328 1.55e-68 218
Msa0987550 MtrunA17_Chr4g0063671 40.728 302 165 5 42 331 21 320 2.52e-68 217
Msa0987550 MtrunA17_Chr7g0254201 40.594 303 169 5 36 331 14 312 4.77e-68 216
Msa0987550 MtrunA17_Chr2g0299691 39.275 331 180 8 17 332 35 359 5.29e-68 218
Msa0987550 MtrunA17_Chr4g0072091 41.000 300 167 4 42 331 24 323 7.02e-68 216
Msa0987550 MtrunA17_Chr2g0320091 40.635 315 172 8 24 331 12 318 1.14e-67 215
Msa0987550 MtrunA17_Chr1g0204011 38.199 322 174 7 21 331 15 322 1.25e-67 215
Msa0987550 MtrunA17_Chr2g0292291 40.244 328 168 8 20 331 17 332 2.44e-67 216
Msa0987550 MtrunA17_Chr2g0320031 38.253 332 185 7 6 331 2 319 2.79e-67 214
Msa0987550 MtrunA17_Chr1g0194151 41.311 305 163 7 42 331 30 333 3.20e-67 214
Msa0987550 MtrunA17_Chr5g0404721 39.203 301 164 7 46 331 34 330 3.22e-67 214
Msa0987550 MtrunA17_Chr2g0279041 39.274 303 171 4 40 331 25 325 3.39e-67 214
Msa0987550 MtrunA17_Chr4g0013171 37.898 314 186 6 25 331 10 321 1.28e-66 213
Msa0987550 MtrunA17_Chr1g0148021 39.404 302 171 5 42 331 27 328 3.43e-66 212
Msa0987550 MtrunA17_Chr8g0372601 39.333 300 165 7 46 331 34 330 1.03e-65 211
Msa0987550 MtrunA17_Chr3g0106921 39.933 298 169 5 42 331 25 320 1.27e-65 210
Msa0987550 MtrunA17_Chr1g0197411 37.294 303 177 5 42 331 28 330 2.11e-65 210
Msa0987550 MtrunA17_Chr1g0157051 40.000 305 164 9 38 330 20 317 2.33e-65 209
Msa0987550 MtrunA17_Chr7g0225221 39.527 296 173 4 42 331 25 320 6.93e-65 208
Msa0987550 MtrunA17_Chr2g0296621 38.255 298 172 5 42 332 50 342 8.95e-65 209
Msa0987550 MtrunA17_Chr5g0432441 40.134 299 168 5 42 331 30 326 1.08e-64 208
Msa0987550 MtrunA17_Chr4g0013201 40.667 300 171 5 37 331 41 338 1.23e-64 208
Msa0987550 MtrunA17_Chr2g0320051 40.273 293 167 6 45 331 28 318 1.25e-64 207
Msa0987550 MtrunA17_Chr2g0322861 40.264 303 165 8 42 331 87 386 1.77e-64 209
Msa0987550 MtrunA17_Chr3g0129051 39.249 293 169 6 42 327 28 318 3.93e-64 206
Msa0987550 MtrunA17_Chr1g0155611 41.118 304 165 6 41 331 45 347 5.11e-64 207
Msa0987550 MtrunA17_Chr7g0268501 39.535 301 166 7 42 331 25 320 6.01e-64 206
Msa0987550 MtrunA17_Chr7g0268521 39.535 301 166 7 42 331 25 320 6.01e-64 206
Msa0987550 MtrunA17_Chr1g0194271 40.385 312 163 7 42 331 30 340 6.61e-64 206
Msa0987550 MtrunA17_Chr3g0114451 37.690 329 189 7 8 331 1 318 1.70e-63 204
Msa0987550 MtrunA17_Chr2g0320061 39.865 296 170 6 42 331 25 318 7.40e-63 203
Msa0987550 MtrunA17_Chr4g0068621 38.538 301 172 8 42 331 38 336 1.20e-62 203
Msa0987550 MtrunA17_Chr1g0181431 36.634 303 181 5 39 332 24 324 1.23e-62 202
Msa0987550 MtrunA17_Chr4g0013191 41.497 294 161 6 46 331 50 340 2.26e-62 202
Msa0987550 MtrunA17_Chr5g0400331 37.864 309 170 8 42 331 26 331 2.71e-62 202
Msa0987550 MtrunA17_Chr4g0013821 36.774 310 179 8 42 339 28 332 3.67e-62 202
Msa0987550 MtrunA17_Chr6g0460711 37.954 303 178 4 36 331 15 314 7.57e-62 200
Msa0987550 MtrunA17_Chr4g0024121 35.928 334 188 7 10 331 7 326 9.53e-62 200
Msa0987550 MtrunA17_Chr1g0164891 39.203 301 167 7 46 331 93 392 1.07e-61 202
Msa0987550 MtrunA17_Chr5g0438021 37.374 297 177 6 42 331 31 325 1.22e-61 200
Msa0987550 MtrunA17_Chr1g0181481 37.333 300 177 5 42 332 27 324 1.25e-61 200
Msa0987550 MtrunA17_Chr1g0181511 36.667 300 179 5 42 332 27 324 1.42e-61 200
Msa0987550 MtrunA17_Chr4g0076211 37.162 296 175 4 43 331 42 333 2.21e-61 199
Msa0987550 MtrunA17_Chr4g0013721 37.919 298 168 8 46 331 104 396 3.82e-61 201
Msa0987550 MtrunA17_Chr4g0013181 38.095 294 173 6 45 331 62 353 5.97e-61 199
Msa0987550 MtrunA17_Chr4g0038151 37.793 299 175 5 42 331 25 321 2.62e-60 196
Msa0987550 MtrunA17_Chr4g0074851 35.000 340 200 8 1 331 1 328 7.90e-60 196
Msa0987550 MtrunA17_Chr4g0038161 38.127 299 174 5 42 331 24 320 9.41e-60 195
Msa0987550 MtrunA17_Chr8g0364291 36.455 299 178 4 45 331 26 324 5.07e-59 193
Msa0987550 MtrunA17_Chr3g0129061 36.137 321 187 7 14 327 9 318 7.77e-58 190
Msa0987550 MtrunA17_Chr7g0244451 38.305 295 175 5 42 331 24 316 8.60e-58 190
Msa0987550 MtrunA17_Chr3g0136751 36.842 304 180 4 38 331 21 322 2.13e-57 189
Msa0987550 MtrunA17_Chr7g0244461 36.120 299 184 5 38 331 16 312 2.58e-57 188
Msa0987550 MtrunA17_Chr4g0043391 36.455 299 180 5 42 331 27 324 2.60e-57 189
Msa0987550 MtrunA17_Chr4g0038171 37.000 300 177 6 42 331 24 321 7.14e-57 187
Msa0987550 MtrunA17_Chr5g0432351 37.908 306 175 10 37 331 20 321 2.12e-55 184
Msa0987550 MtrunA17_Chr1g0213061 34.731 334 196 8 6 332 4 322 3.12e-55 183
Msa0987550 MtrunA17_Chr3g0129041 35.385 325 192 6 14 331 9 322 4.08e-55 183
Msa0987550 MtrunA17_Chr7g0224371 36.644 292 177 6 46 332 35 323 1.05e-54 182
Msa0987550 MtrunA17_Chr3g0107881 35.928 334 184 10 11 331 8 324 4.41e-53 177
Msa0987550 MtrunA17_Chr2g0316791 32.424 330 178 7 42 328 76 403 1.42e-52 179
Msa0987550 MtrunA17_Chr2g0329641 32.635 334 208 7 11 331 6 335 2.01e-52 176
Msa0987550 MtrunA17_Chr5g0432331 36.482 307 178 11 37 331 51 352 3.84e-52 176
Msa0987550 MtrunA17_Chr6g0451571 34.884 301 185 5 42 331 34 334 5.52e-52 175
Msa0987550 MtrunA17_Chr2g0316481 32.733 333 173 8 42 328 76 403 8.61e-52 177
Msa0987550 MtrunA17_Chr3g0106901 35.168 327 188 8 11 331 15 323 2.33e-51 173
Msa0987550 MtrunA17_Chr5g0432341 36.601 306 179 10 37 331 20 321 1.37e-50 171
Msa0987550 MtrunA17_Chr2g0316191 31.737 334 176 8 42 328 76 404 1.49e-50 173
Msa0987550 MtrunA17_Chr5g0413051 33.987 306 185 6 42 331 73 377 1.63e-50 172
Msa0987550 MtrunA17_Chr2g0316831 32.432 333 174 8 42 328 112 439 2.95e-50 174
Msa0987550 MtrunA17_Chr2g0279061 38.521 257 145 4 86 331 12 266 4.87e-50 168
Msa0987550 MtrunA17_Chr5g0421411 36.655 281 159 8 68 331 7 285 7.29e-50 168
Msa0987550 MtrunA17_Chr2g0311251 32.229 332 179 8 42 330 11 339 8.30e-50 170
Msa0987550 MtrunA17_Chr2g0311241 29.570 372 177 8 42 330 60 429 2.49e-48 168
Msa0987550 MtrunA17_Chr2g0278671 30.795 302 195 6 42 331 24 323 2.86e-41 147
Msa0987550 MtrunA17_Chr2g0292281 41.121 214 102 8 130 331 15 216 4.24e-40 141
Msa0987550 MtrunA17_Chr4g0004591 30.599 317 154 7 42 330 77 355 1.63e-38 140
Msa0987550 MtrunA17_Chr5g0432401 33.110 299 148 9 42 330 29 285 1.54e-36 133
Msa0987550 MtrunA17_Chr2g0316811 36.715 207 106 5 42 239 50 240 2.30e-35 131
Msa0987550 MtrunA17_Chr3g0114461 39.130 184 108 4 151 331 10 192 7.26e-32 118
Msa0987550 MtrunA17_Chr1g0181501 36.170 188 113 4 151 332 4 190 1.05e-28 110
Msa0987550 MtrunA17_Chr2g0316141 28.315 279 148 9 88 328 11 275 2.56e-22 95.1
Msa0987550 MtrunA17_Chr2g0316181 28.315 279 148 9 88 328 11 275 2.56e-22 95.1
Msa0987550 MtrunA17_Chr3g0114491 41.284 109 60 2 42 147 18 125 9.17e-22 89.7
Msa0987550 MtrunA17_Chr5g0423911 63.636 66 24 0 262 327 2 67 1.17e-20 85.9
Msa0987550 MtrunA17_Chr1g0181491 36.697 109 63 3 42 147 12 117 7.86e-17 76.6
Msa0987550 MtrunA17_Chr6g0468731 49.275 69 33 1 81 149 22 88 3.80e-15 70.1
Msa0987550 MtrunA17_Chr7g0268491 41.667 96 55 1 236 331 3 97 6.50e-15 69.7
Msa0987550 MtrunA17_Chr5g0432321 36.441 118 71 3 161 276 17 132 7.63e-14 67.8
Msa0987550 MtrunA17_Chr3g0124821 27.985 268 137 11 74 315 119 356 8.25e-12 65.9
Msa0987550 MtrunA17_Chr7g0254181 37.143 105 62 2 101 205 22 122 6.62e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0987550 AT1G71695.1 50.559 358 161 5 8 349 1 358 5.69e-124 361
Msa0987550 AT5G06730.1 42.363 347 173 9 1 332 1 335 2.08e-80 249
Msa0987550 AT2G18980.1 43.092 304 162 5 38 331 21 323 2.20e-78 243
Msa0987550 AT4G33420.1 39.938 323 174 5 13 331 19 325 6.05e-76 237
Msa0987550 AT5G14130.1 39.755 327 179 4 14 331 13 330 9.11e-76 237
Msa0987550 AT5G19890.1 43.377 302 155 6 42 331 30 327 9.16e-76 237
Msa0987550 AT4G33420.2 39.938 323 174 5 13 331 66 372 1.87e-75 237
Msa0987550 AT5G14130.2 39.755 327 179 4 14 331 54 371 2.16e-75 237
Msa0987550 AT4G30170.1 42.857 301 159 7 42 331 27 325 1.79e-73 231
Msa0987550 AT5G06720.1 40.120 334 174 10 14 332 12 334 2.37e-72 228
Msa0987550 AT1G49570.1 42.000 300 159 6 42 327 48 346 6.30e-72 228
Msa0987550 AT2G18140.1 40.333 300 164 7 45 331 38 335 5.43e-71 225
Msa0987550 AT5G64120.1 37.538 325 195 3 13 331 6 328 1.62e-70 223
Msa0987550 AT4G36430.1 39.465 299 166 7 46 331 34 330 1.71e-70 223
Msa0987550 AT2G24800.1 40.717 307 163 5 39 331 28 329 2.44e-70 223
Msa0987550 AT2G34060.1 36.471 340 201 5 5 329 5 344 3.78e-70 223
Msa0987550 AT5G19880.1 40.196 306 166 6 42 331 25 329 4.96e-70 222
Msa0987550 AT2G18150.1 39.465 299 166 7 46 331 40 336 9.61e-69 219
Msa0987550 AT4G08780.1 39.252 321 179 7 42 348 24 342 2.09e-68 218
Msa0987550 AT4G08770.1 39.875 321 177 7 42 348 24 342 2.49e-68 218
Msa0987550 AT4G26010.1 38.870 301 174 6 35 331 15 309 2.65e-68 217
Msa0987550 AT5G17820.1 38.411 302 174 4 36 331 18 313 3.15e-68 217
Msa0987550 AT4G26010.2 38.870 301 174 6 35 331 43 337 3.65e-68 218
Msa0987550 AT3G03670.1 40.323 310 166 7 36 331 17 321 8.20e-68 216
Msa0987550 AT5G17820.2 38.411 302 174 4 36 331 71 366 1.47e-67 217
Msa0987550 AT5G51890.1 38.562 306 173 6 37 331 21 322 1.09e-66 213
Msa0987550 AT5G42180.1 40.264 303 164 6 39 330 20 316 1.27e-66 213
Msa0987550 AT3G32980.1 36.827 353 194 9 6 343 6 344 1.64e-66 214
Msa0987550 AT1G05260.1 38.762 307 174 7 37 331 21 325 2.10e-66 213
Msa0987550 AT2G38390.1 40.789 304 165 7 42 331 31 333 2.32e-66 213
Msa0987550 AT2G41480.1 39.073 302 170 4 42 331 29 328 4.39e-66 212
Msa0987550 AT5G39580.1 36.858 331 187 5 8 331 4 319 5.32e-66 211
Msa0987550 AT3G50990.1 38.487 304 176 5 39 331 38 341 9.05e-66 211
Msa0987550 AT3G21770.1 38.206 301 172 7 42 330 29 327 1.43e-65 211
Msa0987550 AT5G05340.1 38.721 297 173 5 42 331 30 324 4.26e-65 209
Msa0987550 AT4G31760.1 39.274 303 166 6 42 331 29 326 5.02e-65 209
Msa0987550 AT5G66390.1 36.152 343 197 7 1 331 1 333 7.19e-65 209
Msa0987550 AT3G49960.1 37.278 338 189 7 8 331 1 329 1.08e-64 208
Msa0987550 AT4G37530.1 40.264 303 168 5 42 331 27 329 1.12e-64 208
Msa0987550 AT3G49120.1 37.461 323 182 7 42 350 32 348 1.70e-64 209
Msa0987550 AT1G30870.1 39.465 299 168 5 42 331 51 345 2.15e-64 208
Msa0987550 AT2G38380.1 40.461 304 166 7 42 331 31 333 3.16e-64 207
Msa0987550 AT4G37520.1 38.614 303 173 5 42 331 27 329 6.47e-64 206
Msa0987550 AT5G58390.1 39.939 328 171 9 14 331 5 316 8.98e-64 206
Msa0987550 AT3G17070.1 35.860 343 199 6 3 331 4 339 1.44e-63 206
Msa0987550 AT4G16270.1 37.954 303 171 8 42 331 50 348 1.86e-63 206
Msa0987550 AT4G21960.1 34.862 327 199 6 14 331 6 327 2.24e-63 205
Msa0987550 AT3G49110.1 36.338 355 187 10 14 350 16 349 2.72e-63 206
Msa0987550 AT5G15180.1 36.070 341 196 7 1 331 1 329 3.04e-63 204
Msa0987550 AT5G67400.1 38.614 303 173 5 42 331 27 329 1.01e-62 203
Msa0987550 AT2G35380.1 37.778 315 168 9 37 331 29 335 5.17e-62 201
Msa0987550 AT5G24070.1 35.629 334 200 5 11 332 6 336 5.42e-62 202
Msa0987550 AT1G14550.1 36.890 328 185 7 12 331 8 321 7.12e-62 201
Msa0987550 AT5G58400.1 37.919 298 175 5 42 331 30 325 9.37e-62 201
Msa0987550 AT4G37520.2 37.954 303 172 6 42 331 27 326 3.10e-61 199
Msa0987550 AT4G11290.1 35.629 334 190 8 12 331 4 326 3.64e-61 199
Msa0987550 AT3G01190.1 36.196 326 188 7 15 331 7 321 1.28e-60 197
Msa0987550 AT1G44970.1 38.000 300 170 7 46 331 49 346 3.12e-60 197
Msa0987550 AT2G22420.1 36.825 315 180 9 38 338 17 326 1.05e-59 195
Msa0987550 AT1G05240.1 36.424 302 178 6 42 331 26 325 2.58e-59 194
Msa0987550 AT1G05250.1 36.424 302 178 6 42 331 26 325 2.58e-59 194
Msa0987550 AT2G39040.1 37.267 322 176 10 33 331 32 350 2.72e-58 192
Msa0987550 AT1G68850.1 36.570 309 174 9 42 331 30 335 2.93e-58 192
Msa0987550 AT5G22410.1 35.692 325 184 8 15 327 10 321 4.60e-58 191
Msa0987550 AT3G28200.1 36.486 296 182 3 42 331 21 316 7.26e-58 190
Msa0987550 AT2G43480.1 34.951 309 184 6 37 331 30 335 3.67e-57 189
Msa0987550 AT4G17690.1 37.377 305 182 5 34 331 20 322 3.84e-57 189
Msa0987550 AT5G40150.1 35.690 297 184 4 42 331 32 328 1.51e-56 187
Msa0987550 AT1G14540.1 36.677 319 184 7 20 331 8 315 3.74e-56 186
Msa0987550 AT1G34510.1 36.000 300 182 6 36 331 16 309 9.00e-56 184
Msa0987550 AT2G37130.1 35.333 300 182 6 42 331 30 327 1.13e-55 185
Msa0987550 AT2G37130.2 35.354 297 180 6 45 331 2 296 1.28e-55 184
Msa0987550 AT1G24110.1 35.855 304 184 5 42 334 22 325 2.94e-55 184
Msa0987550 AT5G47000.1 36.913 298 180 4 42 331 33 330 5.51e-55 183
Msa0987550 AT1G77100.1 34.049 326 200 7 14 331 1 319 6.57e-55 182
Msa0987550 AT5G64100.1 34.139 331 203 6 12 331 5 331 1.66e-54 182
Msa0987550 AT5G64110.1 37.037 297 172 6 46 331 38 330 2.30e-54 182
Msa0987550 AT4G37530.2 40.625 256 139 5 42 284 27 282 1.22e-53 178
Msa0987550 AT4G33870.1 31.231 333 181 6 42 328 68 398 1.44e-51 176
Msa0987550 AT4G25980.1 30.195 308 190 6 42 331 26 326 1.95e-45 158
Msa0987550 AT2G35380.2 36.694 248 136 7 101 331 4 247 2.35e-44 153
Msa0987550 AT3G17070.2 36.260 262 150 6 84 331 18 276 1.40e-43 152
Msa0987550 AT5G39580.2 37.441 211 117 2 8 218 4 199 1.10e-39 140
Msa0987550 AT2G24800.2 41.379 174 93 3 39 208 28 196 1.47e-35 130
Msa0987550 AT4G25980.2 34.524 168 107 2 42 208 71 236 6.64e-31 119
Msa0987550 AT4G08390.3 28.462 260 146 11 74 315 124 361 1.51e-12 68.6
Msa0987550 AT4G08390.2 28.462 260 146 11 74 315 125 362 1.71e-12 68.2
Msa0987550 AT4G08390.5 28.462 260 146 11 74 315 125 362 1.71e-12 68.2
Msa0987550 AT4G08390.1 28.462 260 146 11 74 315 125 362 1.71e-12 68.2
Msa0987550 AT3G42570.1 33.333 108 68 2 101 206 44 149 9.65e-11 60.1

Find 82 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCTTCCACACTCTTTA+TGG 0.066029 6_4:-38221408 None:intergenic
CATCTGTGACATCAAAGTTT+TGG 0.266237 6_4:-38224154 None:intergenic
CTTCCATGATTGCTTTGTTC+AGG 0.273834 6_4:+38220602 Msa0987550:CDS
GTGTTACCTGAATTTGCATT+AGG 0.308048 6_4:-38224299 None:intergenic
ACAGATGTTGTTGCCTTATC+AGG 0.309782 6_4:+38224170 Msa0987550:CDS
TCTTTGTTTGATTTCTTTGT+GGG 0.313557 6_4:-38220341 None:intergenic
TGAAAACCATTGATGACATT+AGG 0.315664 6_4:+38221377 Msa0987550:CDS
TTCAAGGTTGGGACATGTTT+GGG 0.319115 6_4:-38220505 None:intergenic
CCTAGTGGTACTGGAAAATT+AGG 0.331632 6_4:-38224038 None:intergenic
GCTAAATGTAATGTGGTAAA+TGG 0.345255 6_4:+38224554 Msa0987550:CDS
TTGTCCATTGTGGGGTCTGC+TGG 0.346257 6_4:-38224245 None:intergenic
TTCATACTTCCATGCCTCTA+AGG 0.346674 6_4:+38220431 Msa0987550:CDS
GAAAACCATTGATGACATTA+GGG 0.352381 6_4:+38221378 Msa0987550:CDS
GGTGGTTGATCTCTTTCTCC+TGG 0.361258 6_4:-38221328 None:intergenic
ATCTTTGTTTGATTTCTTTG+TGG 0.366471 6_4:-38220342 None:intergenic
GGTGAGTCAGTTGAATGTTT+TGG 0.374761 6_4:+38224508 Msa0987550:CDS
TCTGTTCTCATGCCTCCATT+TGG 0.376449 6_4:-38221349 None:intergenic
TATTTGTTGTCGAATGTTGC+CGG 0.379179 6_4:-38224344 None:intergenic
TTTCAAGGTTGGGACATGTT+TGG 0.387676 6_4:-38220506 None:intergenic
TCGAATCAATATTCAAATCT+TGG 0.389629 6_4:-38224409 None:intergenic
TGTTACCTGAATTTGCATTA+GGG 0.407529 6_4:-38224298 None:intergenic
TGATTCGAGGACAAAGGGTT+TGG 0.411511 6_4:+38224424 Msa0987550:CDS
TTATCAGGTGCACACACATT+TGG 0.420167 6_4:+38224185 Msa0987550:CDS
TCTCTTCTTCCTAGTGGTAC+TGG 0.420647 6_4:-38224047 None:intergenic
TAGTATGTTGTTGTTGATGT+TGG 0.425254 6_4:+38224682 Msa0987550:three_prime_UTR
TGTTTGGGTAAAGAAATTAT+AGG 0.444514 6_4:-38220490 None:intergenic
CTTGTTTGTTCATCAAATCA+AGG 0.451076 6_4:-38224370 None:intergenic
ACTTGCCCTAATGCAAATTC+AGG 0.452712 6_4:+38224293 Msa0987550:CDS
TCAGACAATGGCCAAGCTCC+TGG 0.456261 6_4:+38220564 Msa0987550:CDS
GTTCTCATGCCTCCATTTGG+TGG 0.462989 6_4:-38221346 None:intergenic
TAGGACAACCCTTTCACTAC+TGG 0.470644 6_4:-38220471 None:intergenic
TTACCTGAACAAAGCAATCA+TGG 0.472303 6_4:-38220605 None:intergenic
AGCAATCATGGAAGAAAATA+CGG 0.473199 6_4:-38220593 None:intergenic
GTGCTACTGGATGGAAGTCC+AGG 0.474173 6_4:+38221310 Msa0987550:CDS
AAGATTTGAATATTGATTCG+AGG 0.476214 6_4:+38224411 Msa0987550:CDS
ATTTGTTGTCGAATGTTGCC+GGG 0.478530 6_4:-38224343 None:intergenic
AATGGAGTTTACTAGGAAAA+CGG 0.479377 6_4:-38221470 None:intergenic
TTGCCGGGGTCCGTATGTCT+AGG 0.481190 6_4:-38224328 None:intergenic
TTTGTCTACTTTGGTGGAAG+AGG 0.489747 6_4:+38224592 Msa0987550:CDS
TACTTTGGTGGAAGAGGGAA+TGG 0.490108 6_4:+38224598 Msa0987550:CDS
AAATGTGTGTGCACCTGATA+AGG 0.491324 6_4:-38224183 None:intergenic
ACATGTACTTGAGTTTGCTA+TGG 0.492082 6_4:+38224788 Msa0987550:three_prime_UTR
CTGTGCAGATATCACTGTCT+TGG 0.492534 6_4:+38221435 Msa0987550:CDS
GAAGTATGAAGCAAGTAGAA+TGG 0.492688 6_4:-38220418 None:intergenic
ATGTGATGGATCAGTGCTAC+TGG 0.506122 6_4:+38221297 Msa0987550:CDS
GAAAGAGATCAACCACCAAA+TGG 0.506240 6_4:+38221334 Msa0987550:CDS
AATATTGATTCGAGGACAAA+GGG 0.506986 6_4:+38224419 Msa0987550:CDS
TTACTAGGAAAACGGCTTCA+CGG 0.511374 6_4:-38221462 None:intergenic
GCAGATATCACTGTCTTGGC+TGG 0.521345 6_4:+38221439 Msa0987550:CDS
TTTCCATCTCTTCTTCCTAG+TGG 0.525851 6_4:-38224053 None:intergenic
ATCAATATTCAAATCTTGGT+CGG 0.526116 6_4:-38224405 None:intergenic
TTGTCTACTTTGGTGGAAGA+GGG 0.530208 6_4:+38224593 Msa0987550:CDS
ACAAAGAAATCAAACAAAGA+TGG 0.533032 6_4:+38220344 Msa0987550:exon
ATTTGAACACCTTGGTGAGA+TGG 0.537451 6_4:-38220542 None:intergenic
AAGAGCCCTAATGTCATCAA+TGG 0.538416 6_4:-38221383 None:intergenic
AAGAAAATACGGAGTAAGCC+AGG 0.547031 6_4:-38220582 None:intergenic
GACAACCCTTTCACTACTGG+TGG 0.551774 6_4:-38220468 None:intergenic
TACGGAGTAAGCCAGGAGCT+TGG 0.556983 6_4:-38220575 None:intergenic
ATGCCCCACCAGTAGTGAAA+GGG 0.569803 6_4:+38220463 Msa0987550:CDS
GAATATTGATTCGAGGACAA+AGG 0.570018 6_4:+38224418 Msa0987550:CDS
ATATGTATGTAGGGATGTGA+TGG 0.571667 6_4:+38221283 Msa0987550:intron
TCTTGTTGTAATAATAAGAA+CGG 0.576582 6_4:+38224753 Msa0987550:three_prime_UTR
CTTGATTTGATGAACAAACA+AGG 0.578618 6_4:+38224371 Msa0987550:CDS
AATGCCCCACCAGTAGTGAA+AGG 0.580484 6_4:+38220462 Msa0987550:CDS
CAAGACAGTGATATCTGCAC+AGG 0.588336 6_4:-38221434 None:intergenic
TTGTCCATAAAGAGTGTGGA+AGG 0.591374 6_4:+38221404 Msa0987550:CDS
ACATTTGGTCGTGCACATTG+TGG 0.592460 6_4:+38224200 Msa0987550:CDS
ACACTGCAAACCTAGACATA+CGG 0.598903 6_4:+38224318 Msa0987550:CDS
GTACCACTAGGAAGAAGAGA+TGG 0.602871 6_4:+38224050 Msa0987550:CDS
CAACCCTTTCACTACTGGTG+GGG 0.602899 6_4:-38220466 None:intergenic
ACAACCCTTTCACTACTGGT+GGG 0.603386 6_4:-38220467 None:intergenic
ATTGTCTGATTTGAACACCT+TGG 0.612524 6_4:-38220550 None:intergenic
AAACCTAGACATACGGACCC+CGG 0.626217 6_4:+38224325 Msa0987550:CDS
GCTCTTGTCCATAAAGAGTG+TGG 0.630917 6_4:+38221400 Msa0987550:CDS
GATGGATCAGTGCTACTGGA+TGG 0.647755 6_4:+38221301 Msa0987550:CDS
CTCTCCAGCAGACCCCACAA+TGG 0.655386 6_4:+38224241 Msa0987550:CDS
AGAGATCAACCACCAAATGG+AGG 0.657924 6_4:+38221337 Msa0987550:CDS
AAATGTAATGTGGTAAATGG+TGG 0.658711 6_4:+38224557 Msa0987550:CDS
TTTGTTGTCGAATGTTGCCG+GGG 0.666395 6_4:-38224342 None:intergenic
AATTCGTGCTAAATGTAATG+TGG 0.676115 6_4:+38224547 Msa0987550:CDS
AAGGTGTTCAAATCAGACAA+TGG 0.687062 6_4:+38220552 Msa0987550:CDS
TGTGAGAAACCATCTCACCA+AGG 0.756814 6_4:+38220533 Msa0987550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATATAATATTTTTAT+AGG + chr6_4:38223088-38223107 Msa0987550:intron 0.0%
!!! ATATATTTTGCATAAATAAT+TGG - chr6_4:38220640-38220659 None:intergenic 10.0%
!! TGTATAAAATAAAAGTAAAA+TGG - chr6_4:38221491-38221510 None:intergenic 10.0%
!!! ATATATTTTCCTTAAAAAAA+AGG + chr6_4:38221738-38221757 Msa0987550:intron 10.0%
!!! TATATTTTCCTTAAAAAAAA+GGG + chr6_4:38221739-38221758 Msa0987550:intron 10.0%
!! TAAAAAAAAAAAAAGTTATG+GGG + chr6_4:38221949-38221968 Msa0987550:intron 10.0%
!!! TAAAATGAATATTTTTTTTG+GGG - chr6_4:38222098-38222117 None:intergenic 10.0%
!! AATGTCATAATAATATTAAA+TGG - chr6_4:38223904-38223923 None:intergenic 10.0%
!!! ATATTAAAACCTATTTTGAA+TGG + chr6_4:38220812-38220831 Msa0987550:intron 15.0%
!! AATAACTCTTATATTATTAC+AGG + chr6_4:38221032-38221051 Msa0987550:intron 15.0%
!! ATAACTCTTATATTATTACA+GGG + chr6_4:38221033-38221052 Msa0987550:intron 15.0%
!!! AGAATATAAAAAGTTTTGTT+AGG - chr6_4:38221231-38221250 None:intergenic 15.0%
!! AATGTATCAAAAAATTAGTA+GGG - chr6_4:38221565-38221584 None:intergenic 15.0%
!! TAATGTATCAAAAAATTAGT+AGG - chr6_4:38221566-38221585 None:intergenic 15.0%
!!! TATTGTTTCTAAAATATCAA+TGG + chr6_4:38221774-38221793 Msa0987550:intron 15.0%
!!! ATATTATTTTCAAAGGAAAT+AGG + chr6_4:38221984-38222003 Msa0987550:intron 15.0%
!!! ATTTTTTGAGTAAATCAAAT+TGG - chr6_4:38222993-38223012 None:intergenic 15.0%
!!! TAATAATACTTTGAAGTTTA+AGG - chr6_4:38223410-38223429 None:intergenic 15.0%
!! ACTATCTTAAAATTTATGAT+TGG - chr6_4:38223871-38223890 None:intergenic 15.0%
!!! GTTTATTAATGCTTTTATTA+AGG + chr6_4:38224487-38224506 Msa0987550:CDS 15.0%
!! TAACCTAACAAAATTCATAT+GGG - chr6_4:38220898-38220917 None:intergenic 20.0%
!! GTGTTTGTAATATCAAAAAA+AGG - chr6_4:38221132-38221151 None:intergenic 20.0%
!! ACATTATCTCACTTATTTAA+TGG + chr6_4:38221150-38221169 Msa0987550:intron 20.0%
!!! TAGTTGATATATATGTATGT+AGG + chr6_4:38221273-38221292 Msa0987550:intron 20.0%
!!! AGTTGATATATATGTATGTA+GGG + chr6_4:38221274-38221293 Msa0987550:intron 20.0%
!! ATGTATCAAAAAATTAGTAG+GGG - chr6_4:38221564-38221583 None:intergenic 20.0%
!!! ATATTAGAGACAAAATTTTG+TGG - chr6_4:38221611-38221630 None:intergenic 20.0%
!!! ACTCTTTTCATATTTCAATT+TGG + chr6_4:38221679-38221698 Msa0987550:intron 20.0%
!! TCACAGTTGAATTAATATAT+GGG - chr6_4:38222376-38222395 None:intergenic 20.0%
!! ATCACAGTTGAATTAATATA+TGG - chr6_4:38222377-38222396 None:intergenic 20.0%
!! TTTAGAAAAATAACGAAAGT+AGG - chr6_4:38222442-38222461 None:intergenic 20.0%
!!! AAAGACTCAAGTTTTTTTTT+TGG - chr6_4:38222713-38222732 None:intergenic 20.0%
!! AATAATCGAGTTATAAACAT+CGG + chr6_4:38222840-38222859 Msa0987550:intron 20.0%
!!! TACATTTGAGATAATCAAAT+TGG - chr6_4:38223020-38223039 None:intergenic 20.0%
!!! TCCTTATAAAATATTTTACG+TGG + chr6_4:38223128-38223147 Msa0987550:intron 20.0%
!!! TCATAATTTTTTTGAATGAC+TGG - chr6_4:38223156-38223175 None:intergenic 20.0%
!! TTAAAATATGCTTTACCTAA+AGG + chr6_4:38223464-38223483 Msa0987550:intron 20.0%
!!! AAGTATTGAGTTATTTTTGT+TGG + chr6_4:38223568-38223587 Msa0987550:intron 20.0%
!!! TTTTTTTTTTTTTTTGGGAG+AGG - chr6_4:38223682-38223701 None:intergenic 20.0%
!! GTCATAATAATATTAAATGG+AGG - chr6_4:38223901-38223920 None:intergenic 20.0%
!!! TCTTGTTGTAATAATAAGAA+CGG + chr6_4:38224753-38224772 Msa0987550:three_prime_UTR 20.0%
!! TCTTTGTTTGATTTCTTTGT+GGG - chr6_4:38220344-38220363 None:intergenic 25.0%
!! ATCTTTGTTTGATTTCTTTG+TGG - chr6_4:38220345-38220364 None:intergenic 25.0%
! ACAAAGAAATCAAACAAAGA+TGG + chr6_4:38220344-38220363 Msa0987550:exon 25.0%
! TGTTTGGGTAAAGAAATTAT+AGG - chr6_4:38220493-38220512 None:intergenic 25.0%
!!! CCAGTATATATTTTGAGATT+CGG - chr6_4:38220777-38220796 None:intergenic 25.0%
!! TTTCCCATATGAATTTTGTT+AGG + chr6_4:38220892-38220911 Msa0987550:intron 25.0%
! CTAACCTAACAAAATTCATA+TGG - chr6_4:38220899-38220918 None:intergenic 25.0%
! TTATCTCACTTATTTAATGG+AGG + chr6_4:38221153-38221172 Msa0987550:intron 25.0%
! AAAGTAAAATGGAGTTTACT+AGG - chr6_4:38221480-38221499 None:intergenic 25.0%
! CATCAAAAACATGATTAGTA+GGG - chr6_4:38221538-38221557 None:intergenic 25.0%
! ACATCAAAAACATGATTAGT+AGG - chr6_4:38221539-38221558 None:intergenic 25.0%
!!! TATTCACTCCCTTTTTTTTA+AGG - chr6_4:38221750-38221769 None:intergenic 25.0%
!!! CTTTGAAATAAAAAGTCATG+TGG + chr6_4:38221831-38221850 Msa0987550:intron 25.0%
!!! TTTTCTAAAACAATAGTGAG+AGG + chr6_4:38222453-38222472 Msa0987550:intron 25.0%
!! GCCACGTAAAATATTTTATA+AGG - chr6_4:38223132-38223151 None:intergenic 25.0%
!! CCAAATTTTTATATTCTGTG+AGG - chr6_4:38223202-38223221 None:intergenic 25.0%
! CCTCACAGAATATAAAAATT+TGG + chr6_4:38223199-38223218 Msa0987550:intron 25.0%
! GTCAACATAAAATAACCTTT+AGG - chr6_4:38223482-38223501 None:intergenic 25.0%
! ATTTAAAAGCCTTCTTGTAT+TGG + chr6_4:38223715-38223734 Msa0987550:intron 25.0%
! GACTGTAGAATAAAAAATCA+AGG - chr6_4:38224011-38224030 None:intergenic 25.0%
!!! TGATTTTTTATTCTACAGTC+AGG + chr6_4:38224011-38224030 Msa0987550:intron 25.0%
! ATCAATATTCAAATCTTGGT+CGG - chr6_4:38224408-38224427 None:intergenic 25.0%
! TCGAATCAATATTCAAATCT+TGG - chr6_4:38224412-38224431 None:intergenic 25.0%
!!! AAGATTTGAATATTGATTCG+AGG + chr6_4:38224411-38224430 Msa0987550:CDS 25.0%
!!! TTGGTTTTTTGTGTATTTTG+AGG + chr6_4:38224701-38224720 Msa0987550:three_prime_UTR 25.0%
AGCAATCATGGAAGAAAATA+CGG - chr6_4:38220596-38220615 None:intergenic 30.0%
CCGAATCTCAAAATATATAC+TGG + chr6_4:38220774-38220793 Msa0987550:intron 30.0%
!! AAACCTATTTTGAATGGTTC+AGG + chr6_4:38220818-38220837 Msa0987550:intron 30.0%
!! AACCTATTTTGAATGGTTCA+GGG + chr6_4:38220819-38220838 Msa0987550:intron 30.0%
TCTTATATTATTACAGGGAG+TGG + chr6_4:38221038-38221057 Msa0987550:intron 30.0%
! AAAGGAGAGAGTGTAATTAA+AGG - chr6_4:38221114-38221133 None:intergenic 30.0%
! AATGTCATCAATGGTTTTCA+AGG - chr6_4:38221377-38221396 None:intergenic 30.0%
! TGAAAACCATTGATGACATT+AGG + chr6_4:38221377-38221396 Msa0987550:CDS 30.0%
! GAAAACCATTGATGACATTA+GGG + chr6_4:38221378-38221397 Msa0987550:CDS 30.0%
AATGGAGTTTACTAGGAAAA+CGG - chr6_4:38221473-38221492 None:intergenic 30.0%
TAAAAAGTCATGTGGAGTTA+TGG + chr6_4:38221839-38221858 Msa0987550:intron 30.0%
AATAGGCAAAGAAGTAGTAA+CGG - chr6_4:38221930-38221949 None:intergenic 30.0%
ACTGTTTAATGTGACAACAA+AGG - chr6_4:38222033-38222052 None:intergenic 30.0%
CTTGATCAAGTATGTATCAA+CGG - chr6_4:38222214-38222233 None:intergenic 30.0%
!!! TCAAGTTTTTTTTTTGGTGG+TGG - chr6_4:38222707-38222726 None:intergenic 30.0%
!!! GACTCAAGTTTTTTTTTTGG+TGG - chr6_4:38222710-38222729 None:intergenic 30.0%
CATAAAATGTTAGACTCTCA+TGG + chr6_4:38222898-38222917 Msa0987550:intron 30.0%
TGGTATGACGAACAATTATT+TGG + chr6_4:38222918-38222937 Msa0987550:intron 30.0%
!! TTGAGCATCGATTAAATATG+TGG - chr6_4:38222962-38222981 None:intergenic 30.0%
GAGTTGTCAAACAAAAGAAA+AGG - chr6_4:38223370-38223389 None:intergenic 30.0%
!!! GTTATTTTTGTTGGAACATG+AGG + chr6_4:38223577-38223596 Msa0987550:intron 30.0%
AAGAAAAGTCCAATACAAGA+AGG - chr6_4:38223727-38223746 None:intergenic 30.0%
! ACTCTTCAACACAACTTTTT+CGG - chr6_4:38223779-38223798 None:intergenic 30.0%
CATCACTTATAAACACATGT+GGG - chr6_4:38223804-38223823 None:intergenic 30.0%
TCATCACTTATAAACACATG+TGG - chr6_4:38223805-38223824 None:intergenic 30.0%
!!! TTTTTTATTCTACAGTCAGG+AGG + chr6_4:38224014-38224033 Msa0987550:intron 30.0%
!! GTAACATCTGTTTTGTTGAA+TGG - chr6_4:38224116-38224135 None:intergenic 30.0%
! ATCTGTGACATCAAAGTTTT+GGG - chr6_4:38224156-38224175 None:intergenic 30.0%
TGTTACCTGAATTTGCATTA+GGG - chr6_4:38224301-38224320 None:intergenic 30.0%
CTTGTTTGTTCATCAAATCA+AGG - chr6_4:38224373-38224392 None:intergenic 30.0%
! CTTGATTTGATGAACAAACA+AGG + chr6_4:38224371-38224390 Msa0987550:CDS 30.0%
!! AATATTGATTCGAGGACAAA+GGG + chr6_4:38224419-38224438 Msa0987550:CDS 30.0%
!!! AATGTTTTGGTTGGAAATCA+AGG + chr6_4:38224521-38224540 Msa0987550:CDS 30.0%
AATTCGTGCTAAATGTAATG+TGG + chr6_4:38224547-38224566 Msa0987550:CDS 30.0%
GCTAAATGTAATGTGGTAAA+TGG + chr6_4:38224554-38224573 Msa0987550:CDS 30.0%
AAATGTAATGTGGTAAATGG+TGG + chr6_4:38224557-38224576 Msa0987550:CDS 30.0%
! GAAATCTGTTTTGTCTACTT+TGG + chr6_4:38224583-38224602 Msa0987550:CDS 30.0%
! TAGTATGTTGTTGTTGATGT+TGG + chr6_4:38224682-38224701 Msa0987550:three_prime_UTR 30.0%
GAAGTATGAAGCAAGTAGAA+TGG - chr6_4:38220421-38220440 None:intergenic 35.0%
!! CTCACAATGTTTTCAAGGTT+GGG - chr6_4:38220519-38220538 None:intergenic 35.0%
!! TCTCACAATGTTTTCAAGGT+TGG - chr6_4:38220520-38220539 None:intergenic 35.0%
! GGTTTCTCACAATGTTTTCA+AGG - chr6_4:38220524-38220543 None:intergenic 35.0%
! ATTGTCTGATTTGAACACCT+TGG - chr6_4:38220553-38220572 None:intergenic 35.0%
! AAGGTGTTCAAATCAGACAA+TGG + chr6_4:38220552-38220571 Msa0987550:CDS 35.0%
TTACCTGAACAAAGCAATCA+TGG - chr6_4:38220608-38220627 None:intergenic 35.0%
!!! AGGGTGTTGGCTTAAAATTT+TGG + chr6_4:38220838-38220857 Msa0987550:intron 35.0%
TTGTGATCGATTAACTGTGT+AGG + chr6_4:38220972-38220991 Msa0987550:intron 35.0%
GTGTAATTAAAGGTGGATAG+TGG - chr6_4:38221104-38221123 None:intergenic 35.0%
CACTTATTTAATGGAGGATC+TGG + chr6_4:38221159-38221178 Msa0987550:intron 35.0%
ATATGTATGTAGGGATGTGA+TGG + chr6_4:38221283-38221302 Msa0987550:intron 35.0%
ATTTGAGTGTCAACCTAGTT+GGG + chr6_4:38221882-38221901 Msa0987550:intron 35.0%
GACAATGCATGATATATGCA+AGG + chr6_4:38222662-38222681 Msa0987550:intron 35.0%
AACCTAAGTCTTTGATCAAG+TGG - chr6_4:38223225-38223244 None:intergenic 35.0%
AGAAGCCTACAATAATGCAA+AGG + chr6_4:38223269-38223288 Msa0987550:intron 35.0%
TTGAGCCTTTGCATTATTGT+AGG - chr6_4:38223277-38223296 None:intergenic 35.0%
!! ACTTTTAAGTCTTGCAACGT+GGG - chr6_4:38223301-38223320 None:intergenic 35.0%
!! TACTTTTAAGTCTTGCAACG+TGG - chr6_4:38223302-38223321 None:intergenic 35.0%
! TTGGACTTTTCTTGTTGCAT+TGG + chr6_4:38223734-38223753 Msa0987550:intron 35.0%
TTTCTTGTTGCATTGGACTT+TGG + chr6_4:38223741-38223760 Msa0987550:intron 35.0%
!! CACGACAAAACTGACTTTTA+AGG - chr6_4:38223837-38223856 None:intergenic 35.0%
!! TCTGTTTTGTTGAATGGTTG+TGG - chr6_4:38224110-38224129 None:intergenic 35.0%
! CATCTGTGACATCAAAGTTT+TGG - chr6_4:38224157-38224176 None:intergenic 35.0%
!!! GCAAGTGTTTTTGAGGTTTT+GGG - chr6_4:38224279-38224298 None:intergenic 35.0%
GTGTTACCTGAATTTGCATT+AGG - chr6_4:38224302-38224321 None:intergenic 35.0%
!! TATTTGTTGTCGAATGTTGC+CGG - chr6_4:38224347-38224366 None:intergenic 35.0%
!! GAATATTGATTCGAGGACAA+AGG + chr6_4:38224418-38224437 Msa0987550:CDS 35.0%
!!! AGTCAGTTGAATGTTTTGGT+TGG + chr6_4:38224512-38224531 Msa0987550:CDS 35.0%
! ATCTGTTTTGTCTACTTTGG+TGG + chr6_4:38224586-38224605 Msa0987550:CDS 35.0%
!! ACATGTACTTGAGTTTGCTA+TGG + chr6_4:38224788-38224807 Msa0987550:three_prime_UTR 35.0%
TTCATACTTCCATGCCTCTA+AGG + chr6_4:38220431-38220450 Msa0987550:CDS 40.0%
TTCAAGGTTGGGACATGTTT+GGG - chr6_4:38220508-38220527 None:intergenic 40.0%
TTTCAAGGTTGGGACATGTT+TGG - chr6_4:38220509-38220528 None:intergenic 40.0%
ATTTGAACACCTTGGTGAGA+TGG - chr6_4:38220545-38220564 None:intergenic 40.0%
AAGAAAATACGGAGTAAGCC+AGG - chr6_4:38220585-38220604 None:intergenic 40.0%
! CTTCCATGATTGCTTTGTTC+AGG + chr6_4:38220602-38220621 Msa0987550:CDS 40.0%
CACCCTGAACCATTCAAAAT+AGG - chr6_4:38220824-38220843 None:intergenic 40.0%
! TTTTGAATGGTTCAGGGTGT+TGG + chr6_4:38220825-38220844 Msa0987550:intron 40.0%
! GGAGAGAGTGTAATTAAAGG+TGG - chr6_4:38221111-38221130 None:intergenic 40.0%
GAAAGAGATCAACCACCAAA+TGG + chr6_4:38221334-38221353 Msa0987550:CDS 40.0%
AAGAGCCCTAATGTCATCAA+TGG - chr6_4:38221386-38221405 None:intergenic 40.0%
! TTGTCCATAAAGAGTGTGGA+AGG + chr6_4:38221404-38221423 Msa0987550:CDS 40.0%
CAATCCTTCCACACTCTTTA+TGG - chr6_4:38221411-38221430 None:intergenic 40.0%
TTACTAGGAAAACGGCTTCA+CGG - chr6_4:38221465-38221484 None:intergenic 40.0%
CATTTGAGTGTCAACCTAGT+TGG + chr6_4:38221881-38221900 Msa0987550:intron 40.0%
GAGACAAAAACATCCCAACT+AGG - chr6_4:38221898-38221917 None:intergenic 40.0%
GAAGTAGTAACGGTATCAAG+AGG - chr6_4:38221920-38221939 None:intergenic 40.0%
TCAAAGGAAATAGGAGACAG+TGG + chr6_4:38221993-38222012 Msa0987550:intron 40.0%
TAGACAATCCGACAACTGAT+CGG + chr6_4:38222285-38222304 Msa0987550:intron 40.0%
GATCGGTAGGTGAAAATTAC+AGG + chr6_4:38222302-38222321 Msa0987550:intron 40.0%
AAACTTGAGCTTAGCTCAGT+TGG + chr6_4:38222635-38222654 Msa0987550:intron 40.0%
TGCATGATATATGCAAGGTC+CGG + chr6_4:38222667-38222686 Msa0987550:intron 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG - chr6_4:38222702-38222721 None:intergenic 40.0%
!!! GTTTTTTTTTTGGTGGTGGC+CGG - chr6_4:38222703-38222722 None:intergenic 40.0%
CTTCTAGCAAGACTTTGGTT+GGG - chr6_4:38223254-38223273 None:intergenic 40.0%
! CCTAGTGGTACTGGAAAATT+AGG - chr6_4:38224041-38224060 None:intergenic 40.0%
! CCTAATTTTCCAGTACCACT+AGG + chr6_4:38224038-38224057 Msa0987550:CDS 40.0%
TTTCCATCTCTTCTTCCTAG+TGG - chr6_4:38224056-38224075 None:intergenic 40.0%
ACAGATGTTGTTGCCTTATC+AGG + chr6_4:38224170-38224189 Msa0987550:CDS 40.0%
AAATGTGTGTGCACCTGATA+AGG - chr6_4:38224186-38224205 None:intergenic 40.0%
TTATCAGGTGCACACACATT+TGG + chr6_4:38224185-38224204 Msa0987550:CDS 40.0%
!!! GTTTTTGAGGTTTTGGGCTA+GGG - chr6_4:38224273-38224292 None:intergenic 40.0%
!!! TGTTTTTGAGGTTTTGGGCT+AGG - chr6_4:38224274-38224293 None:intergenic 40.0%
!!! GGCAAGTGTTTTTGAGGTTT+TGG - chr6_4:38224280-38224299 None:intergenic 40.0%
!! CATTAGGGCAAGTGTTTTTG+AGG - chr6_4:38224286-38224305 None:intergenic 40.0%
ACTTGCCCTAATGCAAATTC+AGG + chr6_4:38224293-38224312 Msa0987550:CDS 40.0%
ACACTGCAAACCTAGACATA+CGG + chr6_4:38224318-38224337 Msa0987550:CDS 40.0%
!! ATTTGTTGTCGAATGTTGCC+GGG - chr6_4:38224346-38224365 None:intergenic 40.0%
! GGTGAGTCAGTTGAATGTTT+TGG + chr6_4:38224508-38224527 Msa0987550:CDS 40.0%
TTTGTCTACTTTGGTGGAAG+AGG + chr6_4:38224592-38224611 Msa0987550:CDS 40.0%
TTGTCTACTTTGGTGGAAGA+GGG + chr6_4:38224593-38224612 Msa0987550:CDS 40.0%
! TGTTTTGTGCCTTAGAGGCA+TGG - chr6_4:38220443-38220462 None:intergenic 45.0%
!! GGCATTGTTTTGTGCCTTAG+AGG - chr6_4:38220448-38220467 None:intergenic 45.0%
ACAACCCTTTCACTACTGGT+GGG - chr6_4:38220470-38220489 None:intergenic 45.0%
TAGGACAACCCTTTCACTAC+TGG - chr6_4:38220474-38220493 None:intergenic 45.0%
TGTGAGAAACCATCTCACCA+AGG + chr6_4:38220533-38220552 Msa0987550:CDS 45.0%
AAAATAGGAGGGATCTCCAC+GGG - chr6_4:38221071-38221090 None:intergenic 45.0%
GAAAATAGGAGGGATCTCCA+CGG - chr6_4:38221072-38221091 None:intergenic 45.0%
GTGCACTGCAGAAAATAGGA+GGG - chr6_4:38221082-38221101 None:intergenic 45.0%
AGTGGTGCACTGCAGAAAAT+AGG - chr6_4:38221086-38221105 None:intergenic 45.0%
!! ATGTGATGGATCAGTGCTAC+TGG + chr6_4:38221297-38221316 Msa0987550:CDS 45.0%
AGAGATCAACCACCAAATGG+AGG + chr6_4:38221337-38221356 Msa0987550:CDS 45.0%
TCTGTTCTCATGCCTCCATT+TGG - chr6_4:38221352-38221371 None:intergenic 45.0%
GCTCTTGTCCATAAAGAGTG+TGG + chr6_4:38221400-38221419 Msa0987550:CDS 45.0%
CAAGACAGTGATATCTGCAC+AGG - chr6_4:38221437-38221456 None:intergenic 45.0%
CTGTGCAGATATCACTGTCT+TGG + chr6_4:38221435-38221454 Msa0987550:CDS 45.0%
TTCACCTACCGATCAGTTGT+CGG - chr6_4:38222296-38222315 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG + chr6_4:38222640-38222659 Msa0987550:intron 45.0%
GCATGATATATGCAAGGTCC+GGG + chr6_4:38222668-38222687 Msa0987550:intron 45.0%
CATGATATATGCAAGGTCCG+GGG + chr6_4:38222669-38222688 Msa0987550:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG - chr6_4:38222701-38222720 None:intergenic 45.0%
GGCCACTTGATCAAAGACTT+AGG + chr6_4:38223220-38223239 Msa0987550:intron 45.0%
GCTTCTAGCAAGACTTTGGT+TGG - chr6_4:38223255-38223274 None:intergenic 45.0%
GTAGGCTTCTAGCAAGACTT+TGG - chr6_4:38223259-38223278 None:intergenic 45.0%
TCTCTTCTTCCTAGTGGTAC+TGG - chr6_4:38224050-38224069 None:intergenic 45.0%
GTACCACTAGGAAGAAGAGA+TGG + chr6_4:38224050-38224069 Msa0987550:CDS 45.0%
ACATTTGGTCGTGCACATTG+TGG + chr6_4:38224200-38224219 Msa0987550:CDS 45.0%
!! CTAGGGTTTTGTCCATTGTG+GGG - chr6_4:38224256-38224275 None:intergenic 45.0%
!! GCTAGGGTTTTGTCCATTGT+GGG - chr6_4:38224257-38224276 None:intergenic 45.0%
! TTTGTTGTCGAATGTTGCCG+GGG - chr6_4:38224345-38224364 None:intergenic 45.0%
TGATTCGAGGACAAAGGGTT+TGG + chr6_4:38224424-38224443 Msa0987550:CDS 45.0%
TACTTTGGTGGAAGAGGGAA+TGG + chr6_4:38224598-38224617 Msa0987550:CDS 45.0%
!!! TATTAATGATATTAAATTTT+AGG - chr6_4:38221016-38221035 None:intergenic 5.0%
!!! TTTATTTTATACATTTTTTT+TGG + chr6_4:38221498-38221517 Msa0987550:intron 5.0%
!!! TAACTTTTTTTTTTTTTAAT+AGG - chr6_4:38221947-38221966 None:intergenic 5.0%
!! ATTAAAAAAAAAAAAAGTTA+TGG + chr6_4:38221947-38221966 Msa0987550:intron 5.0%
!! TTAAAAAAAAAAAAAGTTAT+GGG + chr6_4:38221948-38221967 Msa0987550:intron 5.0%
!!! ATAATTTATATTATTTTCAA+AGG + chr6_4:38221977-38221996 Msa0987550:intron 5.0%
!!! TTAAAATGAATATTTTTTTT+GGG - chr6_4:38222099-38222118 None:intergenic 5.0%
!!! ATTAAAATGAATATTTTTTT+TGG - chr6_4:38222100-38222119 None:intergenic 5.0%
!!! TGATTTTTTTTTTTTTTTTT+GGG - chr6_4:38223687-38223706 None:intergenic 5.0%
!!! TTGATTTTTTTTTTTTTTTT+TGG - chr6_4:38223688-38223707 None:intergenic 5.0%
AATGCCCCACCAGTAGTGAA+AGG + chr6_4:38220462-38220481 Msa0987550:CDS 50.0%
ATGCCCCACCAGTAGTGAAA+GGG + chr6_4:38220463-38220482 Msa0987550:CDS 50.0%
CAACCCTTTCACTACTGGTG+GGG - chr6_4:38220469-38220488 None:intergenic 50.0%
GACAACCCTTTCACTACTGG+TGG - chr6_4:38220471-38220490 None:intergenic 50.0%
GGTGCACTGCAGAAAATAGG+AGG - chr6_4:38221083-38221102 None:intergenic 50.0%
! GATGGATCAGTGCTACTGGA+TGG + chr6_4:38221301-38221320 Msa0987550:CDS 50.0%
GGTGGTTGATCTCTTTCTCC+TGG - chr6_4:38221331-38221350 None:intergenic 50.0%
GTTCTCATGCCTCCATTTGG+TGG - chr6_4:38221349-38221368 None:intergenic 50.0%
GCAGATATCACTGTCTTGGC+TGG + chr6_4:38221439-38221458 Msa0987550:CDS 50.0%
GGAGTTATGGTGAGAGACGA+TGG + chr6_4:38221852-38221871 Msa0987550:intron 50.0%
GTTATGGTGAGAGACGATGG+AGG + chr6_4:38221855-38221874 Msa0987550:intron 50.0%
CAATCCGACAACTGATCGGT+AGG + chr6_4:38222289-38222308 Msa0987550:intron 50.0%
!! GGCTAGGGTTTTGTCCATTG+TGG - chr6_4:38224258-38224277 None:intergenic 50.0%
AAACCTAGACATACGGACCC+CGG + chr6_4:38224325-38224344 Msa0987550:CDS 50.0%
TCAGACAATGGCCAAGCTCC+TGG + chr6_4:38220564-38220583 Msa0987550:CDS 55.0%
TACGGAGTAAGCCAGGAGCT+TGG - chr6_4:38220578-38220597 None:intergenic 55.0%
! GTGCTACTGGATGGAAGTCC+AGG + chr6_4:38221310-38221329 Msa0987550:CDS 55.0%
AAGGTCCGGGGTTTAAACCC+CGG + chr6_4:38222681-38222700 Msa0987550:intron 55.0%
TTGTCCATTGTGGGGTCTGC+TGG - chr6_4:38224248-38224267 None:intergenic 55.0%
AGGGAGTGGATCATCTCCCG+TGG + chr6_4:38221052-38221071 Msa0987550:intron 60.0%
CTCTCCAGCAGACCCCACAA+TGG + chr6_4:38224241-38224260 Msa0987550:CDS 60.0%
TTGCCGGGGTCCGTATGTCT+AGG - chr6_4:38224331-38224350 None:intergenic 60.0%
GGTGGCCGGGGTTTAAACCC+CGG - chr6_4:38222689-38222708 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 38220338 38224864 38220338 ID=Msa0987550;Name=Msa0987550
chr6_4 mRNA 38220338 38224864 38220338 ID=Msa0987550-mRNA-1;Parent=Msa0987550;Name=Msa0987550-mRNA-1;_AED=0.02;_eAED=0.02;_QI=25|1|1|1|1|1|3|224|352
chr6_4 exon 38220338 38220623 38220338 ID=Msa0987550-mRNA-1:exon:9428;Parent=Msa0987550-mRNA-1
chr6_4 exon 38221295 38221480 38221295 ID=Msa0987550-mRNA-1:exon:9429;Parent=Msa0987550-mRNA-1
chr6_4 exon 38224029 38224864 38224029 ID=Msa0987550-mRNA-1:exon:9430;Parent=Msa0987550-mRNA-1
chr6_4 five_prime_UTR 38220338 38220362 38220338 ID=Msa0987550-mRNA-1:five_prime_utr;Parent=Msa0987550-mRNA-1
chr6_4 CDS 38220363 38220623 38220363 ID=Msa0987550-mRNA-1:cds;Parent=Msa0987550-mRNA-1
chr6_4 CDS 38221295 38221480 38221295 ID=Msa0987550-mRNA-1:cds;Parent=Msa0987550-mRNA-1
chr6_4 CDS 38224029 38224640 38224029 ID=Msa0987550-mRNA-1:cds;Parent=Msa0987550-mRNA-1
chr6_4 three_prime_UTR 38224641 38224864 38224641 ID=Msa0987550-mRNA-1:three_prime_utr;Parent=Msa0987550-mRNA-1
Gene Sequence

>Msa0987550

ATGGCTAAGAATAGTGCTTCTATCACTTCTTTCTACTCTTTGCTTTTGATATCTTCCATTCTACTTGCTTCATACTTCCATGCCTCTAAGGCACAAAACAATGCCCCACCAGTAGTGAAAGGGTTGTCCTATAATTTCTTTACCCAAACATGTCCCAACCTTGAAAACATTGTGAGAAACCATCTCACCAAGGTGTTCAAATCAGACAATGGCCAAGCTCCTGGCTTACTCCGTATTTTCTTCCATGATTGCTTTGTTCAGGGATGTGATGGATCAGTGCTACTGGATGGAAGTCCAGGAGAAAGAGATCAACCACCAAATGGAGGCATGAGAACAGAAGCCTTGAAAACCATTGATGACATTAGGGCTCTTGTCCATAAAGAGTGTGGAAGGATTGTTTCCTGTGCAGATATCACTGTCTTGGCTGGCCGTGAAGCCGTTTTCCTATCAGGAGGACCTAATTTTCCAGTACCACTAGGAAGAAGAGATGGAAAAACTTTTAGCATTAAAGAAACAAGCAATCTTCCACAACCATTCAACAAAACAGATGTTACACTCAAAGTTTTTGCAGCCCAAAACTTTGATGTCACAGATGTTGTTGCCTTATCAGGTGCACACACATTTGGTCGTGCACATTGTGGAACATTCTTCAATAGACTCTCTCCAGCAGACCCCACAATGGACAAAACCCTAGCCCAAAACCTCAAAAACACTTGCCCTAATGCAAATTCAGGTAACACTGCAAACCTAGACATACGGACCCCGGCAACATTCGACAACAAATACTACCTTGATTTGATGAACAAACAAGGTTTGTTCACATCCGACCAAGATTTGAATATTGATTCGAGGACAAAGGGTTTGGTTAATGATTTCGCTGTTAATCAGAATTTGTTCTTTGAGAAGTTTATTAATGCTTTTATTAAGGTGAGTCAGTTGAATGTTTTGGTTGGAAATCAAGGTGAAATTCGTGCTAAATGTAATGTGGTAAATGGTGGTAAGAAATCTGTTTTGTCTACTTTGGTGGAAGAGGGAATGGACTTGATTGAGCAATTTTAA

Protein sequence

>Msa0987550

MAKNSASITSFYSLLLISSILLASYFHASKAQNNAPPVVKGLSYNFFTQTCPNLENIVRNHLTKVFKSDNGQAPGLLRIFFHDCFVQGCDGSVLLDGSPGERDQPPNGGMRTEALKTIDDIRALVHKECGRIVSCADITVLAGREAVFLSGGPNFPVPLGRRDGKTFSIKETSNLPQPFNKTDVTLKVFAAQNFDVTDVVALSGAHTFGRAHCGTFFNRLSPADPTMDKTLAQNLKNTCPNANSGNTANLDIRTPATFDNKYYLDLMNKQGLFTSDQDLNIDSRTKGLVNDFAVNQNLFFEKFINAFIKVSQLNVLVGNQGEIRAKCNVVNGGKKSVLSTLVEEGMDLIEQF*