AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0679270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679270 MtrunA17_Chr4g0025361 97.778 180 1 1 1 180 1 177 1.40e-129 360
Msa0679270 MtrunA17_Chr2g0322221 71.649 194 40 7 1 180 3 195 4.95e-85 248
Msa0679270 MtrunA17_Chr4g0063931 56.069 173 67 4 7 173 12 181 2.93e-55 173
Msa0679270 MtrunA17_Chr4g0011841 56.173 162 57 4 11 160 25 184 3.66e-49 158
Msa0679270 MtrunA17_Chr4g0056521 46.500 200 72 6 8 180 17 208 1.23e-47 154
Msa0679270 MtrunA17_Chr5g0413381 52.288 153 65 3 9 155 12 162 6.16e-47 152
Msa0679270 MtrunA17_Chr5g0419871 45.570 158 73 4 1 154 7 155 1.76e-35 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679270 AT1G08465.1 57.895 190 64 6 1 180 1 184 1.09e-68 207
Msa0679270 AT2G26580.2 59.064 171 57 4 1 166 1 163 2.80e-58 180
Msa0679270 AT2G26580.1 59.064 171 57 4 1 166 1 163 2.80e-58 180
Msa0679270 AT2G45190.1 53.061 196 69 6 8 180 22 217 4.32e-55 174
Msa0679270 AT4G00180.1 47.642 212 70 5 7 180 21 229 1.08e-47 155
Msa0679270 AT4G00180.2 45.274 201 69 5 18 180 1 198 2.60e-37 128
Msa0679270 AT1G23420.1 41.818 165 76 3 10 158 20 180 1.37e-36 127
Msa0679270 AT1G23420.2 41.818 165 76 3 10 158 51 211 4.99e-36 126
Msa0679270 AT2G45190.2 60.952 105 30 3 87 180 49 153 7.14e-34 118
Msa0679270 AT1G69180.1 42.000 150 71 2 9 154 19 156 9.11e-32 113

Find 54 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTTTGTTGTAGGATT+AGG 0.226265 4_4:+36820960 None:intergenic
TCCACATCTAACTGTTACTA+TGG 0.283760 4_4:+36825367 None:intergenic
GTGGCTGATATCTGGATTAC+TGG 0.287474 4_4:+36821860 None:intergenic
GCCTCCCTGTGGCTGATATC+TGG 0.289400 4_4:+36821852 None:intergenic
AGTCTCCCAATCTTTGTTGT+AGG 0.307481 4_4:+36820954 None:intergenic
CCTAATCCTACAACAAAGAT+TGG 0.310518 4_4:-36820960 Msa0679270:three_prime_UTR
GAAGCAAGCAGCAAGGAAAT+TGG 0.345303 4_4:-36823354 Msa0679270:CDS
GGATTCTACTGATATAAATA+TGG 0.354690 4_4:-36821037 Msa0679270:exon
GGAGGAAATTCAAAGGATTA+AGG 0.360502 4_4:-36821883 Msa0679270:CDS
CATTTCCCTCATATTCACTT+TGG 0.399992 4_4:-36821112 Msa0679270:CDS
ATTTCCCTCATATTCACTTT+GGG 0.416154 4_4:-36821111 Msa0679270:CDS
ATATAACTTACTTAATGAAC+CGG 0.422652 4_4:+36822241 None:intergenic
GGGAGTTGAGGAGGAGGAAA+TGG 0.440779 4_4:+36825296 None:intergenic
TGCTTCCCAAAGTGAATATG+AGG 0.444364 4_4:+36821106 None:intergenic
GGGACTCGTGAAAAGACTAA+TGG 0.445379 4_4:-36821058 Msa0679270:CDS
CGACGAATGGGAGGAATCCT+AGG 0.445790 4_4:+36823270 None:intergenic
TTCATAACAAAAGAAAGAAA+AGG 0.447990 4_4:+36820872 None:intergenic
ATGGTTAACAAACTGCTGTA+TGG 0.448489 4_4:+36825386 None:intergenic
GTGTTCCTTCTGCTTACAAC+CGG 0.449198 4_4:-36822260 Msa0679270:CDS
TGGGAAGCAGCAAGCAAAGT+TGG 0.453770 4_4:-36821092 Msa0679270:CDS
GAGTTTGAGAGTGTGCTTAG+TGG 0.460152 4_4:+36827412 None:intergenic
TCCTCCTCCTCAACTCCCTC+AGG 0.474865 4_4:-36825291 Msa0679270:intron
CTAATCCTACAACAAAGATT+GGG 0.476392 4_4:-36820959 Msa0679270:three_prime_UTR
TACAACAAAGATTGGGAGAC+TGG 0.485449 4_4:-36820952 Msa0679270:three_prime_UTR
CAACAAAATAGCATCATTTG+AGG 0.493091 4_4:-36823313 Msa0679270:CDS
TAAATCTGTGAAAATTAATG+AGG 0.510309 4_4:-36820987 Msa0679270:three_prime_UTR
TCATAACAAAAGAAAGAAAA+GGG 0.511649 4_4:+36820873 None:intergenic
AGAGTGTGACTCACGACGAA+TGG 0.516345 4_4:+36823257 None:intergenic
TAGTAGAGCACGAACATCCT+AGG 0.516780 4_4:-36823287 Msa0679270:CDS
AGAATACTATACCGCTAGAA+TGG 0.519749 4_4:+36827293 None:intergenic
GAGTGTGACTCACGACGAAT+GGG 0.531160 4_4:+36823258 None:intergenic
ACCTGAGGGAGTTGAGGAGG+AGG 0.539948 4_4:+36825290 None:intergenic
TAAACATTGGTGAGAAGCTG+AGG 0.544262 4_4:+36820917 None:intergenic
GGAGGAAATGGCTGAAGTAA+TGG 0.547935 4_4:+36825308 None:intergenic
CAGCAAGCAAAGTTGGATCA+TGG 0.562735 4_4:-36821085 Msa0679270:CDS
GCAAAGTTGGATCATGGTGA+AGG 0.573037 4_4:-36821079 Msa0679270:CDS
AAACATACCTGAGGGAGTTG+AGG 0.577695 4_4:+36825284 None:intergenic
ATGAACCGGTTGTAAGCAGA+AGG 0.582569 4_4:+36822255 None:intergenic
GTAATCCAGATATCAGCCAC+AGG 0.588300 4_4:-36821857 Msa0679270:CDS
TAATTTGCTATCTGTTAACA+TGG 0.605095 4_4:-36825336 Msa0679270:CDS
CAAAGTTGGATCATGGTGAA+GGG 0.606710 4_4:-36821078 Msa0679270:CDS
TCTGTAGGGAGGAAATTCAA+AGG 0.621966 4_4:-36821890 Msa0679270:intron
CTGAGCTGAAAGCCTCCCTG+TGG 0.623676 4_4:+36821841 None:intergenic
CAGGGAGGCTTTCAGCTCAG+CGG 0.634037 4_4:-36821838 Msa0679270:CDS
CATACCTGAGGGAGTTGAGG+AGG 0.635233 4_4:+36825287 None:intergenic
AAGCACACTCTCAAACTCAA+AGG 0.636057 4_4:-36827407 Msa0679270:five_prime_UTR
ACCATAGTAACAGTTAGATG+TGG 0.643235 4_4:-36825368 Msa0679270:CDS
TGTGACTCACGACGAATGGG+AGG 0.645995 4_4:+36823261 None:intergenic
TCATGAAGAAGCAAGCAGCA+AGG 0.659976 4_4:-36823361 Msa0679270:CDS
GCTTCCCAAAGTGAATATGA+GGG 0.661736 4_4:+36821107 None:intergenic
TTTGCTATCTGTTAACATGG+TGG 0.679420 4_4:-36825333 Msa0679270:CDS
TCCAGATATCAGCCACAGGG+AGG 0.683704 4_4:-36821853 Msa0679270:CDS
TAATCCAGATATCAGCCACA+GGG 0.696359 4_4:-36821856 Msa0679270:CDS
CTTCTGCAACACCATTCTAG+CGG 0.715968 4_4:-36827304 Msa0679270:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATATTATAAA+AGG + chr4_4:36823542-36823561 None:intergenic 0.0%
!!! TTATAATATTTTTTTTTTTT+AGG - chr4_4:36823543-36823562 Msa0679270:intron 0.0%
!!! AAAAAAATTATTTAAAATAA+AGG - chr4_4:36826448-36826467 Msa0679270:intron 0.0%
!! TATATATATATATATATATA+TGG + chr4_4:36827020-36827039 None:intergenic 0.0%
!!! ATTTATTATTATATATTTTT+AGG - chr4_4:36827408-36827427 Msa0679270:five_prime_UTR 0.0%
!!! TTTATTATTATATATTTTTA+GGG - chr4_4:36827409-36827428 Msa0679270:five_prime_UTR 0.0%
!! ATATAATTTACTAATTACAA+AGG + chr4_4:36822558-36822577 None:intergenic 10.0%
!!! AATATTTTTTTTTTTTAGGA+TGG - chr4_4:36823547-36823566 Msa0679270:intron 10.0%
!!! ATATTTTTTTTTTTTAGGAT+GGG - chr4_4:36823548-36823567 Msa0679270:intron 10.0%
!! TAAAATAAATAAATTAGCTA+TGG - chr4_4:36823720-36823739 Msa0679270:intron 10.0%
!! CTATTAAAAAAACATAAATT+AGG + chr4_4:36823838-36823857 None:intergenic 10.0%
!!! TTAATAGTAAAAATGATTTT+TGG - chr4_4:36823851-36823870 Msa0679270:intron 10.0%
!!! GATTAAAAACTTTTTTTAAA+AGG - chr4_4:36824151-36824170 Msa0679270:intron 10.0%
!!! AAAATAGTATTTTTTATTTG+TGG + chr4_4:36824475-36824494 None:intergenic 10.0%
!!! AATTTGTTACTTAAAAATAA+TGG + chr4_4:36825292-36825311 None:intergenic 10.0%
!! AATTATATAAATAGAAACAT+TGG + chr4_4:36826290-36826309 None:intergenic 10.0%
!! GTTTCTATTTATATAATTAA+AGG - chr4_4:36826292-36826311 Msa0679270:intron 10.0%
!!! ATTTTGTAAAATTTTAAATG+GGG + chr4_4:36826786-36826805 None:intergenic 10.0%
!!! CATTTTGTAAAATTTTAAAT+GGG + chr4_4:36826787-36826806 None:intergenic 10.0%
!!! ACATTTTGTAAAATTTTAAA+TGG + chr4_4:36826788-36826807 None:intergenic 10.0%
!! TGTATTACTATATAATAAAA+AGG - chr4_4:36826805-36826824 Msa0679270:intron 10.0%
!! TTTCTCATAAAATATAAGTT+AGG + chr4_4:36821298-36821317 None:intergenic 15.0%
!! TCATTATAGAATGTAATTAA+GGG + chr4_4:36821795-36821814 None:intergenic 15.0%
!! TTCATTATAGAATGTAATTA+AGG + chr4_4:36821796-36821815 None:intergenic 15.0%
!! AAAGAAACAAAATGTATATA+TGG + chr4_4:36822486-36822505 None:intergenic 15.0%
!! TTAGTGAAATTAATTGTAAA+TGG - chr4_4:36822768-36822787 Msa0679270:intron 15.0%
!!! ATTTTTTTTGAAGTTTGAAA+TGG - chr4_4:36822806-36822825 Msa0679270:intron 15.0%
!!! AAATTAGTAAGTACATATTT+TGG + chr4_4:36823327-36823346 None:intergenic 15.0%
!!! TATTTTTTTTTTTTAGGATG+GGG - chr4_4:36823549-36823568 Msa0679270:intron 15.0%
!!! AGCTAATTTATTTATTTTAG+TGG + chr4_4:36823719-36823738 None:intergenic 15.0%
!! ATTTAATAACAGATTTAGAA+AGG - chr4_4:36823780-36823799 Msa0679270:intron 15.0%
!!! ATTTTTGGTAAAAACAAAAA+GGG - chr4_4:36823866-36823885 Msa0679270:intron 15.0%
!!! TATACTGAAGTTTTATTTTT+TGG - chr4_4:36823995-36824014 Msa0679270:intron 15.0%
!! ATTTATATAGACAAATTCTA+TGG - chr4_4:36824066-36824085 Msa0679270:intron 15.0%
!! AATTAGCAATAGATTAATTA+AGG + chr4_4:36824826-36824845 None:intergenic 15.0%
!!! TAATTTTTGTATTAGCTTTT+TGG - chr4_4:36824997-36825016 Msa0679270:intron 15.0%
!!! TGTTTTGTATATATTCATAT+AGG - chr4_4:36825318-36825337 Msa0679270:CDS 15.0%
!!! TTTTTCTTCATCAATTTATA+TGG - chr4_4:36825359-36825378 Msa0679270:CDS 15.0%
!!! ACACTTTCTTAATATATTTT+TGG - chr4_4:36826225-36826244 Msa0679270:intron 15.0%
!!! CACTTTCTTAATATATTTTT+GGG - chr4_4:36826226-36826245 Msa0679270:intron 15.0%
!! ATGACTAAAAAAAAATCTAA+AGG - chr4_4:36826720-36826739 Msa0679270:intron 15.0%
!! AAAAAAAAAATGAGTATATC+AGG - chr4_4:36826905-36826924 Msa0679270:intron 15.0%
!! ATATATATATATATGGCATA+TGG + chr4_4:36827013-36827032 None:intergenic 15.0%
!! TGAGATCAACTAATATATAA+AGG - chr4_4:36821100-36821119 Msa0679270:CDS 20.0%
!! ATACAAGCATTATAATCAAT+AGG + chr4_4:36821188-36821207 None:intergenic 20.0%
!! ATTGATTATAATGCTTGTAT+TGG - chr4_4:36821188-36821207 Msa0679270:intron 20.0%
!! TAATATCAGAATCAGATATT+AGG - chr4_4:36821582-36821601 Msa0679270:intron 20.0%
!! AATATCAGAATCAGATATTA+GGG - chr4_4:36821583-36821602 Msa0679270:intron 20.0%
!! AAAAAACAAAGCAAAAACAA+AGG + chr4_4:36821611-36821630 None:intergenic 20.0%
!! AAAAAGACAAGAAAAAAATC+TGG + chr4_4:36821713-36821732 None:intergenic 20.0%
!! AGATGATAAAAGATAGAAAT+TGG + chr4_4:36822201-36822220 None:intergenic 20.0%
!! AAACAAAATGTATATATGGT+TGG + chr4_4:36822482-36822501 None:intergenic 20.0%
!! TGTTTCATATTCATCTTATT+TGG - chr4_4:36822966-36822985 Msa0679270:intron 20.0%
!! GTGTATTTAATACATTGAAA+AGG + chr4_4:36823366-36823385 None:intergenic 20.0%
!! GTATATAGTTGAACTTATTA+AGG - chr4_4:36823511-36823530 Msa0679270:intron 20.0%
!! TGACATTGTTATAATCTTAA+AGG + chr4_4:36823650-36823669 None:intergenic 20.0%
!!! GATTTTTGGTAAAAACAAAA+AGG - chr4_4:36823865-36823884 Msa0679270:intron 20.0%
!!! TTTTTTTAAAAGGAAAACGA+AGG - chr4_4:36824161-36824180 Msa0679270:intron 20.0%
!! AATGACATAAAAGAGATATT+TGG + chr4_4:36824203-36824222 None:intergenic 20.0%
!!! ACACTCAAATACTATTTTTA+TGG - chr4_4:36824340-36824359 Msa0679270:intron 20.0%
!!! ATAGTATTTTTTATTTGTGG+TGG + chr4_4:36824472-36824491 None:intergenic 20.0%
!!! GATAGTGAAATAATACTTTT+AGG - chr4_4:36824751-36824770 Msa0679270:intron 20.0%
!!! AAATAATACTTTTAGGAGTT+AGG - chr4_4:36824758-36824777 Msa0679270:intron 20.0%
!! CTAAATTTGAATAAACAAAG+TGG - chr4_4:36825048-36825067 Msa0679270:intron 20.0%
!!! ATATTTATTTTTGAGAGTCA+TGG - chr4_4:36825498-36825517 Msa0679270:intron 20.0%
!! ATATAACTTACTTAATGAAC+CGG + chr4_4:36825994-36826013 None:intergenic 20.0%
!!! TTTGCTTTTTATTTGAAGAA+AGG - chr4_4:36826166-36826185 Msa0679270:intron 20.0%
!!! TTGCTTTTTATTTGAAGAAA+GGG - chr4_4:36826167-36826186 Msa0679270:intron 20.0%
!!! GCTTATATGTAATTTTTGTA+GGG + chr4_4:36826205-36826224 None:intergenic 20.0%
!!! TGCTTATATGTAATTTTTGT+AGG + chr4_4:36826206-36826225 None:intergenic 20.0%
!!! ATAGAAACATTGGTAAATTT+TGG + chr4_4:36826280-36826299 None:intergenic 20.0%
!!! ATTTAAAATAAAGGTGTTTG+AGG - chr4_4:36826457-36826476 Msa0679270:intron 20.0%
!! ACTAAAAAAAAATCTAAAGG+TGG - chr4_4:36826723-36826742 Msa0679270:intron 20.0%
!!! TGATTTTTAGTAGAATACAA+TGG - chr4_4:36826752-36826771 Msa0679270:intron 20.0%
!! ATATGTTTATATATATGCAG+TGG - chr4_4:36827094-36827113 Msa0679270:intron 20.0%
!! TATGTTTATATATATGCAGT+GGG - chr4_4:36827095-36827114 Msa0679270:intron 20.0%
!!! TCATTAATTTTCACAGATTT+AGG + chr4_4:36827246-36827265 None:intergenic 20.0%
!! TAAATCTGTGAAAATTAATG+AGG - chr4_4:36827245-36827264 Msa0679270:intron 20.0%
!! TCATAACAAAAGAAAGAAAA+GGG + chr4_4:36827362-36827381 None:intergenic 20.0%
!! TTCATAACAAAAGAAAGAAA+AGG + chr4_4:36827363-36827382 None:intergenic 20.0%
!!! ATATATTTTTAGGGTTACTA+TGG - chr4_4:36827418-36827437 Msa0679270:five_prime_UTR 20.0%
! GAGAAAAAGAAAAATGTCAA+TGG - chr4_4:36820865-36820884 Msa0679270:three_prime_UTR 25.0%
!! CTAATTTGCCAAATTAGATA+TGG + chr4_4:36821049-36821068 None:intergenic 25.0%
! TATTGGAAAATCAAGCTTAT+AGG - chr4_4:36821205-36821224 Msa0679270:intron 25.0%
! TTCATAAACTCTAGATTGTT+TGG - chr4_4:36821337-36821356 Msa0679270:intron 25.0%
!! TATAATGAAAGTGTGAATGA+AGG - chr4_4:36821807-36821826 Msa0679270:intron 25.0%
!! GTAAATGTTTTCACATTTTG+AGG - chr4_4:36821894-36821913 Msa0679270:intron 25.0%
!!! ATTTGCTGTAGAAATAAAGA+GGG + chr4_4:36821953-36821972 None:intergenic 25.0%
!!! AATTTGCTGTAGAAATAAAG+AGG + chr4_4:36821954-36821973 None:intergenic 25.0%
! TTAATCTACTTTCTCAAAAG+AGG + chr4_4:36822036-36822055 None:intergenic 25.0%
! TTGAGAAAGTAGATTAAATC+TGG - chr4_4:36822039-36822058 Msa0679270:intron 25.0%
! TTGTATAGAGTAATAACTAG+TGG - chr4_4:36822104-36822123 Msa0679270:intron 25.0%
!!! TAGAGTTGATGAAAAACAAA+TGG + chr4_4:36822516-36822535 None:intergenic 25.0%
! GCTGAAATATCTTAAAACTT+AGG + chr4_4:36822589-36822608 None:intergenic 25.0%
!!! TTTTAAGATATTTCAGCCTT+TGG - chr4_4:36822592-36822611 Msa0679270:intron 25.0%
!! TGTTTGAAGAATGTATGTTT+TGG - chr4_4:36822634-36822653 Msa0679270:intron 25.0%
!! TGGTGTATGAATTTTCTTTT+AGG - chr4_4:36822654-36822673 Msa0679270:intron 25.0%
! TTAGGAATTCCATCTATATA+CGG - chr4_4:36822672-36822691 Msa0679270:intron 25.0%
! GTGAAATTAATTGTAAATGG+TGG - chr4_4:36822771-36822790 Msa0679270:intron 25.0%
!!! TTTTGAAGTTTGAAATGGAT+TGG - chr4_4:36822811-36822830 Msa0679270:intron 25.0%
!!! TAATTTGCTATCTGTTAACA+TGG - chr4_4:36822896-36822915 Msa0679270:intron 25.0%
! TAAGTTCAACTATATACACT+AGG + chr4_4:36823508-36823527 None:intergenic 25.0%
! TGTTATAATCTTAAAGGAGA+AGG + chr4_4:36823644-36823663 None:intergenic 25.0%
!!! TATTTATTTTAGTGGTGTGT+TGG + chr4_4:36823711-36823730 None:intergenic 25.0%
!! CTTTCTCATTTTCTCATTAT+AGG - chr4_4:36823757-36823776 Msa0679270:intron 25.0%
!! ATTTTATGTGTAAGAACCAA+TGG - chr4_4:36823898-36823917 Msa0679270:intron 25.0%
! AACTTCAGTATAATGTTTGA+AGG + chr4_4:36823987-36824006 None:intergenic 25.0%
!!! TATTTTTTATTTGTGGTGGT+CGG + chr4_4:36824468-36824487 None:intergenic 25.0%
! GGTAAATAGTATATACACAT+TGG + chr4_4:36824657-36824676 None:intergenic 25.0%
!!! TACTATTTACCACTTTTGTT+AGG - chr4_4:36824666-36824685 Msa0679270:intron 25.0%
! TGATGCTTAATTTATTGAGT+CGG - chr4_4:36825263-36825282 Msa0679270:intron 25.0%
! AGAAAAAAAATTCCCAAACT+GGG + chr4_4:36825346-36825365 None:intergenic 25.0%
! AAGAAAAAAAATTCCCAAAC+TGG + chr4_4:36825347-36825366 None:intergenic 25.0%
! GAGTCATGGTAATTAATTAT+TGG - chr4_4:36825512-36825531 Msa0679270:intron 25.0%
! TGGTAATTAATTATTGGCAT+TGG - chr4_4:36825518-36825537 Msa0679270:intron 25.0%
! TGGTAATTGTAAACTATTAC+TGG - chr4_4:36825538-36825557 Msa0679270:intron 25.0%
!!! ATGGTTAATTTAGGTTTTCT+TGG + chr4_4:36825649-36825668 None:intergenic 25.0%
! CTTGAAGAAATGGTTAATTT+AGG + chr4_4:36825658-36825677 None:intergenic 25.0%
! TTTGACAAACTAGTAGATTA+AGG + chr4_4:36825771-36825790 None:intergenic 25.0%
!! TACTAGTTTGTCAAAAAATG+AGG - chr4_4:36825776-36825795 Msa0679270:intron 25.0%
! TATGGTTGAGCAAATTAAAA+AGG + chr4_4:36826995-36827014 None:intergenic 25.0%
! GGATTCTACTGATATAAATA+TGG - chr4_4:36827195-36827214 Msa0679270:intron 25.0%
! GTCAAACATAGAAAAAACAA+AGG + chr4_4:36827224-36827243 None:intergenic 25.0%
AGAAAACACAAAAGAAGAGA+TGG + chr4_4:36820971-36820990 None:intergenic 30.0%
! AAATTAGATATGGTGGTGAA+AGG + chr4_4:36821039-36821058 None:intergenic 30.0%
TTTCACCACCATATCTAATT+TGG - chr4_4:36821038-36821057 Msa0679270:exon 30.0%
ATTTGCCAAATTAGATATGG+TGG + chr4_4:36821046-36821065 None:intergenic 30.0%
TTGATCTCATATGATCTTGA+TGG + chr4_4:36821089-36821108 None:intergenic 30.0%
GCATTATAATCAATAGGTCT+TGG + chr4_4:36821182-36821201 None:intergenic 30.0%
AATCAAGCTTATAGGAACAT+TGG - chr4_4:36821213-36821232 Msa0679270:intron 30.0%
GAAAATTCACTTCAACATGA+TGG + chr4_4:36821250-36821269 None:intergenic 30.0%
! GATTTTCAACGAACAAAGTT+AGG - chr4_4:36821410-36821429 Msa0679270:intron 30.0%
TTTGCTTGATCTCTCAAATT+AGG + chr4_4:36821441-36821460 None:intergenic 30.0%
TAGCTAAAAGTCCATGATTA+GGG - chr4_4:36821558-36821577 Msa0679270:intron 30.0%
TCTGATATTAACCCTAATCA+TGG + chr4_4:36821572-36821591 None:intergenic 30.0%
AGAATGTAATTAAGGGATCA+AGG + chr4_4:36821788-36821807 None:intergenic 30.0%
! TTTGCTATGATATGAGAAAG+AGG + chr4_4:36822004-36822023 None:intergenic 30.0%
ATAACTAGTGGTTAAGACTT+TGG - chr4_4:36822116-36822135 Msa0679270:intron 30.0%
TACAATTGAAAATGTGTGTG+TGG + chr4_4:36822350-36822369 None:intergenic 30.0%
! ACACACATTTTCAATTGTAG+TGG - chr4_4:36822351-36822370 Msa0679270:intron 30.0%
AAGATGATAAATAAGCTAGC+AGG + chr4_4:36822452-36822471 None:intergenic 30.0%
!! AGTTGATGAAAAACAAATGG+AGG + chr4_4:36822513-36822532 None:intergenic 30.0%
TGAATATGAAACATACCTGA+GGG + chr4_4:36822959-36822978 None:intergenic 30.0%
ATGAATATGAAACATACCTG+AGG + chr4_4:36822960-36822979 None:intergenic 30.0%
TTGATACCACATCAATTTGT+TGG + chr4_4:36823151-36823170 None:intergenic 30.0%
TATTATAGCAACTGCATGTA+TGG + chr4_4:36823206-36823225 None:intergenic 30.0%
ACATGCAGTTGCTATAATAA+AGG - chr4_4:36823207-36823226 Msa0679270:intron 30.0%
ATCTTCAAGAATTATCACGA+AGG + chr4_4:36823240-36823259 None:intergenic 30.0%
!! AGTACATATTTTGGAAGTCA+CGG + chr4_4:36823318-36823337 None:intergenic 30.0%
TTTGTCATGTTCATGTAACA+TGG + chr4_4:36823465-36823484 None:intergenic 30.0%
!!! TTTTTTTTTTAGGATGGGGA+AGG - chr4_4:36823553-36823572 Msa0679270:intron 30.0%
!!! TTTTTTTTTAGGATGGGGAA+GGG - chr4_4:36823554-36823573 Msa0679270:intron 30.0%
TTGGACTTTAATTCAATGAG+AGG + chr4_4:36823692-36823711 None:intergenic 30.0%
TTAGGGAGAGAAATTTAGAA+CGG + chr4_4:36823820-36823839 None:intergenic 30.0%
!! AACCAATGGTTTGTTTCTTT+AGG - chr4_4:36823912-36823931 Msa0679270:intron 30.0%
TACCTAAAGAAACAAACCAT+TGG + chr4_4:36823917-36823936 None:intergenic 30.0%
TATATAAATTAGAGCACAGG+TGG + chr4_4:36824055-36824074 None:intergenic 30.0%
GTCTATATAAATTAGAGCAC+AGG + chr4_4:36824058-36824077 None:intergenic 30.0%
GGATAATGCATAAAATATGC+AGG - chr4_4:36824427-36824446 Msa0679270:intron 30.0%
!!! ATTTTTTATTTGTGGTGGTC+GGG + chr4_4:36824467-36824486 None:intergenic 30.0%
CAATGTCAAAAAAGCTTCTA+AGG + chr4_4:36824632-36824651 None:intergenic 30.0%
CAACAAAATAGCATCATTTG+AGG - chr4_4:36824919-36824938 Msa0679270:intron 30.0%
ATTTGTCTTGCTTGAAGAAA+TGG + chr4_4:36825668-36825687 None:intergenic 30.0%
TCTTCAAGCAAGACAAATAA+AGG - chr4_4:36825670-36825689 Msa0679270:intron 30.0%
!! AAAATAAAGGTGTTTGAGGT+TGG - chr4_4:36826461-36826480 Msa0679270:intron 30.0%
GTATTCTACTAAAAATCACG+AGG + chr4_4:36826750-36826769 None:intergenic 30.0%
ATGCTATCAAATAAGCAAAG+TGG - chr4_4:36826929-36826948 Msa0679270:intron 30.0%
ATTTCCCTCATATTCACTTT+GGG - chr4_4:36827121-36827140 Msa0679270:intron 30.0%
CTAATCCTACAACAAAGATT+GGG - chr4_4:36827273-36827292 Msa0679270:intron 30.0%
AGAATACTATACCGCTAGAA+TGG + chr4_4:36820942-36820961 None:intergenic 35.0%
TGGTAAGAAGCTTGTATATG+TGG - chr4_4:36821357-36821376 Msa0679270:intron 35.0%
AGAAGCTTGTATATGTGGTA+TGG - chr4_4:36821362-36821381 Msa0679270:intron 35.0%
CATAGCTAGAGTCAAATTTG+TGG - chr4_4:36821533-36821552 Msa0679270:intron 35.0%
!! CTAATCATGGACTTTTAGCT+AGG + chr4_4:36821559-36821578 None:intergenic 35.0%
CTAGCTAAAAGTCCATGATT+AGG - chr4_4:36821557-36821576 Msa0679270:intron 35.0%
TTCTGTACAAATCCATGTGA+TGG - chr4_4:36821732-36821751 Msa0679270:intron 35.0%
AATTAAGGGATCAAGGACAT+AGG + chr4_4:36821781-36821800 None:intergenic 35.0%
AGAGATGAAAATGACTTGAC+TGG + chr4_4:36822153-36822172 None:intergenic 35.0%
!! TGGTTTGCTCATTGTGTTAA+AGG + chr4_4:36822181-36822200 None:intergenic 35.0%
!! AGAGAGAGTCTACTTTTAAG+GGG + chr4_4:36822385-36822404 None:intergenic 35.0%
!! GAGAGAGAGTCTACTTTTAA+GGG + chr4_4:36822386-36822405 None:intergenic 35.0%
!! TGAGAGAGAGTCTACTTTTA+AGG + chr4_4:36822387-36822406 None:intergenic 35.0%
! TCAACTCTATGCTTTTGCTT+TGG - chr4_4:36822527-36822546 Msa0679270:intron 35.0%
AAACCAATCAACAGTACCAA+AGG + chr4_4:36822611-36822630 None:intergenic 35.0%
CAAATGACACCGTATATAGA+TGG + chr4_4:36822684-36822703 None:intergenic 35.0%
ATGGTTAACAAACTGCTGTA+TGG + chr4_4:36822849-36822868 None:intergenic 35.0%
ACCATAGTAACAGTTAGATG+TGG - chr4_4:36822864-36822883 Msa0679270:intron 35.0%
TCCACATCTAACTGTTACTA+TGG + chr4_4:36822868-36822887 None:intergenic 35.0%
! TTTGCTATCTGTTAACATGG+TGG - chr4_4:36822899-36822918 Msa0679270:intron 35.0%
ATTTCCTCTAACCTCAAAGA+GGG + chr4_4:36822994-36823013 None:intergenic 35.0%
TTAGGACACTCATTAGCAAA+AGG + chr4_4:36823287-36823306 None:intergenic 35.0%
! TCTATGTTTGCGGAGATTTT+AGG + chr4_4:36823392-36823411 None:intergenic 35.0%
TGTGAACTCATCTATGTTTG+CGG + chr4_4:36823402-36823421 None:intergenic 35.0%
ACACTATCCCAATACAAAGA+GGG - chr4_4:36823433-36823452 Msa0679270:intron 35.0%
!!! TTTTTTTTAGGATGGGGAAG+GGG - chr4_4:36823555-36823574 Msa0679270:intron 35.0%
GGAGAAGGTTCAAATATTCA+AGG + chr4_4:36823629-36823648 None:intergenic 35.0%
!!! TTTTTTATTTGTGGTGGTCG+GGG + chr4_4:36824466-36824485 None:intergenic 35.0%
!! TACTTTTAGGAGTTAGGACT+TGG - chr4_4:36824764-36824783 Msa0679270:intron 35.0%
!! ACTTTTAGGAGTTAGGACTT+GGG - chr4_4:36824765-36824784 Msa0679270:intron 35.0%
!! TGAATTATGTGCTGTTTCTG+TGG + chr4_4:36824854-36824873 None:intergenic 35.0%
TGTGTGATTGTTGTCATTCA+GGG + chr4_4:36825092-36825111 None:intergenic 35.0%
ATGTGTGATTGTTGTCATTC+AGG + chr4_4:36825093-36825112 None:intergenic 35.0%
ATTCATATAGGTTCCCAGTT+TGG - chr4_4:36825330-36825349 Msa0679270:CDS 35.0%
TTCATATAGGTTCCCAGTTT+GGG - chr4_4:36825331-36825350 Msa0679270:CDS 35.0%
CTTCATCAATTTATATGGCC+CGG - chr4_4:36825364-36825383 Msa0679270:CDS 35.0%
GACAGCAATGAATTAAGGAT+GGG + chr4_4:36825426-36825445 None:intergenic 35.0%
TGACAGCAATGAATTAAGGA+TGG + chr4_4:36825427-36825446 None:intergenic 35.0%
AGGATGACAGCAATGAATTA+AGG + chr4_4:36825431-36825450 None:intergenic 35.0%
AAGTGAAGTGACATGAACAA+TGG - chr4_4:36825595-36825614 Msa0679270:intron 35.0%
CAAGACAAATAAAGGACTCT+GGG - chr4_4:36825678-36825697 Msa0679270:intron 35.0%
!! AAAGGACTCTGGGATAAAAT+TGG - chr4_4:36825688-36825707 Msa0679270:intron 35.0%
! ATGTCTTTTCTCTATAGCTG+TGG + chr4_4:36825951-36825970 None:intergenic 35.0%
!! TCAACACTACTATTTTCGAG+AGG - chr4_4:36826112-36826131 Msa0679270:intron 35.0%
GGAGGAAATTCAAAGGATTA+AGG - chr4_4:36826349-36826368 Msa0679270:intron 35.0%
! AACGTCGATTAACATGGTAA+AGG - chr4_4:36826485-36826504 Msa0679270:intron 35.0%
AATTAACATGCCCTTCATGT+AGG - chr4_4:36826662-36826681 Msa0679270:intron 35.0%
ATTAACATGCCCTTCATGTA+GGG - chr4_4:36826663-36826682 Msa0679270:intron 35.0%
TAATATCGACCCTACATGAA+GGG + chr4_4:36826675-36826694 None:intergenic 35.0%
ATAATATCGACCCTACATGA+AGG + chr4_4:36826676-36826695 None:intergenic 35.0%
GGGTCGATATTATTGTTCAA+AGG - chr4_4:36826683-36826702 Msa0679270:intron 35.0%
CATTTCCCTCATATTCACTT+TGG - chr4_4:36827120-36827139 Msa0679270:intron 35.0%
! CCAATCTTTGTTGTAGGATT+AGG + chr4_4:36827275-36827294 None:intergenic 35.0%
CCTAATCCTACAACAAAGAT+TGG - chr4_4:36827272-36827291 Msa0679270:intron 35.0%
AAGCACACTCTCAAACTCAA+AGG - chr4_4:36820825-36820844 Msa0679270:three_prime_UTR 40.0%
AAATCATGCTTGCCATCACA+TGG + chr4_4:36821747-36821766 None:intergenic 40.0%
! CTTGATGCTTTTCAGCACTA+TGG + chr4_4:36821869-36821888 None:intergenic 40.0%
ACTAGTGGTTAAGACTTTGG+TGG - chr4_4:36822119-36822138 Msa0679270:intron 40.0%
!! CACTTTTTACTGACACTGCA+AGG + chr4_4:36822226-36822245 None:intergenic 40.0%
!! AGAGAGTCTACTTTTAAGGG+GGG + chr4_4:36822383-36822402 None:intergenic 40.0%
!! GAGAGAGTCTACTTTTAAGG+GGG + chr4_4:36822384-36822403 None:intergenic 40.0%
ATGTATATATGGTTGGCAGC+AGG + chr4_4:36822475-36822494 None:intergenic 40.0%
AGCACAAGACGAACAAAGAT+CGG + chr4_4:36822723-36822742 None:intergenic 40.0%
!! GAAGTTTGAAATGGATTGGC+AGG - chr4_4:36822815-36822834 Msa0679270:intron 40.0%
! CTTATTTGGTTCCCTCTTTG+AGG - chr4_4:36822980-36822999 Msa0679270:intron 40.0%
CATTTCCTCTAACCTCAAAG+AGG + chr4_4:36822995-36823014 None:intergenic 40.0%
!! CTCTTTGAGGTTAGAGGAAA+TGG - chr4_4:36822993-36823012 Msa0679270:intron 40.0%
TGAGGTTAGAGGAAATGGAA+TGG - chr4_4:36822998-36823017 Msa0679270:intron 40.0%
TCACGACCAACAAATTGATG+TGG - chr4_4:36823142-36823161 Msa0679270:intron 40.0%
AACTGCATGTATGGTAAGTG+GGG + chr4_4:36823197-36823216 None:intergenic 40.0%
CAACTGCATGTATGGTAAGT+GGG + chr4_4:36823198-36823217 None:intergenic 40.0%
TGTATTGGGATAGTGTCTCT+TGG + chr4_4:36823429-36823448 None:intergenic 40.0%
GACACTATCCCAATACAAAG+AGG - chr4_4:36823432-36823451 Msa0679270:intron 40.0%
ATGCATAAAATATGCAGGCC+TGG - chr4_4:36824432-36824451 Msa0679270:intron 40.0%
TGCATAAAATATGCAGGCCT+GGG - chr4_4:36824433-36824452 Msa0679270:intron 40.0%
CATCACTCTCCTAACAAAAG+TGG + chr4_4:36824678-36824697 None:intergenic 40.0%
CAAAGTGGCAACTACTAACT+AGG - chr4_4:36825063-36825082 Msa0679270:intron 40.0%
TGTGATTGTTGTCATTCAGG+GGG + chr4_4:36825090-36825109 None:intergenic 40.0%
GTGTGATTGTTGTCATTCAG+GGG + chr4_4:36825091-36825110 None:intergenic 40.0%
TAGCTAGCATAGAGTAGCAT+AGG - chr4_4:36825163-36825182 Msa0679270:intron 40.0%
GTTACGTAACGTCACAATCT+TGG + chr4_4:36825395-36825414 None:intergenic 40.0%
TGCATGCATGTGTTCTACTA+GGG + chr4_4:36825457-36825476 None:intergenic 40.0%
ATGCATGCATGTGTTCTACT+AGG + chr4_4:36825458-36825477 None:intergenic 40.0%
CTGGTACTCCAGTTATTGAT+CGG - chr4_4:36825557-36825576 Msa0679270:intron 40.0%
AGCAAACTCCGATCAATAAC+TGG + chr4_4:36825568-36825587 None:intergenic 40.0%
GCAAGACAAATAAAGGACTC+TGG - chr4_4:36825677-36825696 Msa0679270:intron 40.0%
! TTCACCCAATCTTGTTTGCT+AGG - chr4_4:36826059-36826078 Msa0679270:intron 40.0%
TGCACCTAGCAAACAAGATT+GGG + chr4_4:36826066-36826085 None:intergenic 40.0%
TTGCACCTAGCAAACAAGAT+TGG + chr4_4:36826067-36826086 None:intergenic 40.0%
TTCCCTATTGTCTTGTCTGT+AGG - chr4_4:36826327-36826346 Msa0679270:intron 40.0%
TCCCTATTGTCTTGTCTGTA+GGG - chr4_4:36826328-36826347 Msa0679270:intron 40.0%
TCCCTACAGACAAGACAATA+GGG + chr4_4:36826332-36826351 None:intergenic 40.0%
TCTGTAGGGAGGAAATTCAA+AGG - chr4_4:36826342-36826361 Msa0679270:intron 40.0%
TAATCCAGATATCAGCCACA+GGG - chr4_4:36826376-36826395 Msa0679270:intron 40.0%
! GTTGGAAACGTCGATTAACA+TGG - chr4_4:36826479-36826498 Msa0679270:intron 40.0%
CAAGACGAACACGATGAAAA+CGG - chr4_4:36826519-36826538 Msa0679270:intron 40.0%
GCTTCCCAAAGTGAATATGA+GGG + chr4_4:36827128-36827147 None:intergenic 40.0%
TGCTTCCCAAAGTGAATATG+AGG + chr4_4:36827129-36827148 None:intergenic 40.0%
CAAAGTTGGATCATGGTGAA+GGG - chr4_4:36827154-36827173 Msa0679270:intron 40.0%
! AGTCTCCCAATCTTTGTTGT+AGG + chr4_4:36827281-36827300 None:intergenic 40.0%
TACAACAAAGATTGGGAGAC+TGG - chr4_4:36827280-36827299 Msa0679270:intron 40.0%
TAAACATTGGTGAGAAGCTG+AGG + chr4_4:36827318-36827337 None:intergenic 40.0%
! GAGTTTGAGAGTGTGCTTAG+TGG + chr4_4:36820823-36820842 None:intergenic 45.0%
CTTCTGCAACACCATTCTAG+CGG - chr4_4:36820928-36820947 Msa0679270:three_prime_UTR 45.0%
! AGATATGGTGGTGAAAGGTG+TGG + chr4_4:36821034-36821053 None:intergenic 45.0%
! GATGCTTTTCAGCACTATGG+TGG + chr4_4:36821866-36821885 None:intergenic 45.0%
!! GAGAGTCTACTTTTAAGGGG+GGG + chr4_4:36822382-36822401 None:intergenic 45.0%
ATAAGCTAGCAGGAGTGAGA+AGG + chr4_4:36822442-36822461 None:intergenic 45.0%
CAGCCTTTGGTACTGTTGAT+TGG - chr4_4:36822605-36822624 Msa0679270:intron 45.0%
GGAGGAAATGGCTGAAGTAA+TGG + chr4_4:36822927-36822946 None:intergenic 45.0%
AAACATACCTGAGGGAGTTG+AGG + chr4_4:36822951-36822970 None:intergenic 45.0%
GCAACTGCATGTATGGTAAG+TGG + chr4_4:36823199-36823218 None:intergenic 45.0%
GAAGTCACGGACAATGTCTT+AGG + chr4_4:36823305-36823324 None:intergenic 45.0%
GTCTGCTCCCTCTTTGTATT+GGG + chr4_4:36823443-36823462 None:intergenic 45.0%
ATCCAGTACCTTTCTGGACA+GGG + chr4_4:36824093-36824112 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr4_4:36824369-36824388 Msa0679270:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr4_4:36824369-36824388 Msa0679270:intron 45.0%
GCATAAAATATGCAGGCCTG+GGG - chr4_4:36824434-36824453 Msa0679270:intron 45.0%
TCATGAAGAAGCAAGCAGCA+AGG - chr4_4:36824871-36824890 Msa0679270:intron 45.0%
GAAGCAAGCAGCAAGGAAAT+TGG - chr4_4:36824878-36824897 Msa0679270:intron 45.0%
TAGTAGAGCACGAACATCCT+AGG - chr4_4:36824945-36824964 Msa0679270:intron 45.0%
GTGATTGTTGTCATTCAGGG+GGG + chr4_4:36825089-36825108 None:intergenic 45.0%
GTAACGTCACAATCTTGGAG+GGG + chr4_4:36825390-36825409 None:intergenic 45.0%
CGTAACGTCACAATCTTGGA+GGG + chr4_4:36825391-36825410 None:intergenic 45.0%
ACGTAACGTCACAATCTTGG+AGG + chr4_4:36825392-36825411 None:intergenic 45.0%
CATGTGTTCTACTAGGGCAT+AGG + chr4_4:36825451-36825470 None:intergenic 45.0%
GTGTTCCTTCTGCTTACAAC+CGG - chr4_4:36825972-36825991 Msa0679270:intron 45.0%
ATGAACCGGTTGTAAGCAGA+AGG + chr4_4:36825980-36825999 None:intergenic 45.0%
CTCCCTACAGACAAGACAAT+AGG + chr4_4:36826333-36826352 None:intergenic 45.0%
CTATTGTCTTGTCTGTAGGG+AGG - chr4_4:36826331-36826350 Msa0679270:intron 45.0%
GTGGCTGATATCTGGATTAC+TGG + chr4_4:36826375-36826394 None:intergenic 45.0%
GTAATCCAGATATCAGCCAC+AGG - chr4_4:36826375-36826394 Msa0679270:intron 45.0%
GAACACGATGAAAACGGACA+CGG - chr4_4:36826525-36826544 Msa0679270:intron 45.0%
AACACGATGAAAACGGACAC+GGG - chr4_4:36826526-36826545 Msa0679270:intron 45.0%
TGCTAGGGTTTGATGGAGAA+TGG + chr4_4:36826564-36826583 None:intergenic 45.0%
TCTCCATCAAACCCTAGCAT+AGG - chr4_4:36826565-36826584 Msa0679270:intron 45.0%
CTCCATCAAACCCTAGCATA+GGG - chr4_4:36826566-36826585 Msa0679270:intron 45.0%
CAGCAAGCAAAGTTGGATCA+TGG - chr4_4:36827147-36827166 Msa0679270:intron 45.0%
GCAAAGTTGGATCATGGTGA+AGG - chr4_4:36827153-36827172 Msa0679270:intron 45.0%
GGGACTCGTGAAAAGACTAA+TGG - chr4_4:36827174-36827193 Msa0679270:intron 45.0%
!!! TTTTTAAAAAACAAAATATA+TGG - chr4_4:36821629-36821648 Msa0679270:intron 5.0%
!! AAAAATAAAACAAATAAAAA+AGG - chr4_4:36823171-36823190 Msa0679270:intron 5.0%
!! TATTAAAAAAACATAAATTA+GGG + chr4_4:36823837-36823856 None:intergenic 5.0%
!! TATAAAAAAAAAAAAGAAAA+AGG + chr4_4:36824120-36824139 None:intergenic 5.0%
!!! AAAATATTTTTATAAAAAAC+TGG + chr4_4:36824508-36824527 None:intergenic 5.0%
!! TTTGAATATTAAATTTATAT+TGG + chr4_4:36825905-36825924 None:intergenic 5.0%
!!! ATAAATATTATTTTAAACAT+TGG + chr4_4:36827331-36827350 None:intergenic 5.0%
GTTCGTCTTGTGCTGAGACT+TGG - chr4_4:36822729-36822748 Msa0679270:intron 50.0%
!! GGTTCCCTCTTTGAGGTTAG+AGG - chr4_4:36822987-36823006 Msa0679270:intron 50.0%
GGTCTGCTCCCTCTTTGTAT+TGG + chr4_4:36823444-36823463 None:intergenic 50.0%
TCTATGGTCCCTGTCCAGAA+AGG - chr4_4:36824082-36824101 Msa0679270:intron 50.0%
GATCCAGTACCTTTCTGGAC+AGG + chr4_4:36824094-36824113 None:intergenic 50.0%
GGATCGATCCAGTACCTTTC+TGG + chr4_4:36824099-36824118 None:intergenic 50.0%
CCAACTGAGCTAAGCTCACA+AGG + chr4_4:36824367-36824386 None:intergenic 50.0%
CCTTGTGAGCTTAGCTCAGT+TGG - chr4_4:36824364-36824383 Msa0679270:intron 50.0%
CATCGTGAGCTTAGCTCAGT+TGG - chr4_4:36824401-36824420 Msa0679270:intron 50.0%
GAGTGTGACTCACGACGAAT+GGG + chr4_4:36824977-36824996 None:intergenic 50.0%
AGAGTGTGACTCACGACGAA+TGG + chr4_4:36824978-36824997 None:intergenic 50.0%
CTCCCTATGCTAGGGTTTGA+TGG + chr4_4:36826571-36826590 None:intergenic 50.0%
AACCCTAGCATAGGGAGTGA+AGG - chr4_4:36826574-36826593 Msa0679270:intron 50.0%
CTCCTTCACTCCCTATGCTA+GGG + chr4_4:36826579-36826598 None:intergenic 50.0%
ACTCCTTCACTCCCTATGCT+AGG + chr4_4:36826580-36826599 None:intergenic 50.0%
GGGAGTGAAGGAGTAATGCA+AGG - chr4_4:36826586-36826605 Msa0679270:intron 50.0%
TGGGAAGCAGCAAGCAAAGT+TGG - chr4_4:36827140-36827159 Msa0679270:intron 50.0%
GGGAGTTGAGGAGGAGGAAA+TGG + chr4_4:36822939-36822958 None:intergenic 55.0%
CATACCTGAGGGAGTTGAGG+AGG + chr4_4:36822948-36822967 None:intergenic 55.0%
! GTCCCTGTCCAGAAAGGTAC+TGG - chr4_4:36824088-36824107 Msa0679270:intron 55.0%
CGACGAATGGGAGGAATCCT+AGG + chr4_4:36824965-36824984 None:intergenic 55.0%
TGTGACTCACGACGAATGGG+AGG + chr4_4:36824974-36824993 None:intergenic 55.0%
TCCAGATATCAGCCACAGGG+AGG - chr4_4:36826379-36826398 Msa0679270:intron 55.0%
ACGATGAAAACGGACACGGG+AGG - chr4_4:36826529-36826548 Msa0679270:intron 55.0%
TCCTCCTCCTCAACTCCCTC+AGG - chr4_4:36822941-36822960 Msa0679270:intron 60.0%
ACCTGAGGGAGTTGAGGAGG+AGG + chr4_4:36822945-36822964 None:intergenic 60.0%
GTCACAATCTTGGAGGGGCC+GGG + chr4_4:36825385-36825404 None:intergenic 60.0%
CGTCACAATCTTGGAGGGGC+CGG + chr4_4:36825386-36825405 None:intergenic 60.0%
GCCTCCCTGTGGCTGATATC+TGG + chr4_4:36826383-36826402 None:intergenic 60.0%
CTGAGCTGAAAGCCTCCCTG+TGG + chr4_4:36826394-36826413 None:intergenic 60.0%
CAGGGAGGCTTTCAGCTCAG+CGG - chr4_4:36826394-36826413 Msa0679270:intron 60.0%
GTGGTCGGGGTTCGAACCCC+AGG + chr4_4:36824453-36824472 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 36820809 36827445 36820809 ID=Msa0679270;Name=Msa0679270
chr4_4 mRNA 36820809 36827445 36820809 ID=Msa0679270-mRNA-1;Parent=Msa0679270;Name=Msa0679270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=69|1|1|1|1|1|6|239|180
chr4_4 exon 36820809 36821140 36820809 ID=Msa0679270-mRNA-1:exon:8689;Parent=Msa0679270-mRNA-1
chr4_4 exon 36821830 36821905 36821830 ID=Msa0679270-mRNA-1:exon:8688;Parent=Msa0679270-mRNA-1
chr4_4 exon 36822252 36822300 36822252 ID=Msa0679270-mRNA-1:exon:8687;Parent=Msa0679270-mRNA-1
chr4_4 exon 36823271 36823397 36823271 ID=Msa0679270-mRNA-1:exon:8686;Parent=Msa0679270-mRNA-1
chr4_4 exon 36825292 36825417 36825292 ID=Msa0679270-mRNA-1:exon:8685;Parent=Msa0679270-mRNA-1
chr4_4 exon 36827305 36827445 36827305 ID=Msa0679270-mRNA-1:exon:8684;Parent=Msa0679270-mRNA-1
chr4_4 five_prime_UTR 36827377 36827445 36827377 ID=Msa0679270-mRNA-1:five_prime_utr;Parent=Msa0679270-mRNA-1
chr4_4 CDS 36827305 36827376 36827305 ID=Msa0679270-mRNA-1:cds;Parent=Msa0679270-mRNA-1
chr4_4 CDS 36825292 36825417 36825292 ID=Msa0679270-mRNA-1:cds;Parent=Msa0679270-mRNA-1
chr4_4 CDS 36823271 36823397 36823271 ID=Msa0679270-mRNA-1:cds;Parent=Msa0679270-mRNA-1
chr4_4 CDS 36822252 36822300 36822252 ID=Msa0679270-mRNA-1:cds;Parent=Msa0679270-mRNA-1
chr4_4 CDS 36821830 36821905 36821830 ID=Msa0679270-mRNA-1:cds;Parent=Msa0679270-mRNA-1
chr4_4 CDS 36821048 36821140 36821048 ID=Msa0679270-mRNA-1:cds;Parent=Msa0679270-mRNA-1
chr4_4 three_prime_UTR 36820809 36821047 36820809 ID=Msa0679270-mRNA-1:three_prime_utr;Parent=Msa0679270-mRNA-1
Gene Sequence

>Msa0679270

ATGTCAATGGACATGATTGCAACAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAATGTTCCATACAGCAGTTTGTTAACCATAGTAACAGTTAGATGTGGACATTGTGCTAATTTGCTATCTGTTAACATGGTGGCACCATTACTTCAGCCATTTCCTCCTCCTCAACTCCCTCAGAAACAGCACATAATTCATGAAGAAGCAAGCAGCAAGGAAATTGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTAGAGCACGAACATCCTAGGATTCCTCCCATTCGTCCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTACAACCGGTTCATTAAGGAGGAAATTCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCGGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGGAAGCAGCAAGCAAAGTTGGATCATGGTGAAGGGACTCGTGAAAAGACTAATGGATTCTACTGA

Protein sequence

>Msa0679270

MSMDMIATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQKQHIIHEEASSKEIGSSSSKCNKIASFEAVVEHEHPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGKQQAKLDHGEGTREKTNGFY*