AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0886370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0886370 MtrunA17_Chr6g0467121 95.455 352 16 0 1 352 33 384 0.0 691
Msa0886370 MtrunA17_Chr6g0467161 68.843 337 98 3 1 331 1 336 1.69e-167 470
Msa0886370 MtrunA17_Chr6g0467251 55.588 340 142 2 1 337 1 334 2.25e-131 379
Msa0886370 MtrunA17_Chr2g0292211 46.605 324 150 9 42 346 40 359 5.57e-83 256
Msa0886370 MtrunA17_Chr2g0292241 46.483 327 149 9 42 346 29 351 2.69e-81 251
Msa0886370 MtrunA17_Chr2g0292251 43.902 328 160 10 42 349 28 351 4.50e-78 243
Msa0886370 MtrunA17_Chr5g0402581 44.300 307 159 4 36 331 21 326 8.84e-78 241
Msa0886370 MtrunA17_Chr2g0292101 43.711 318 165 6 42 346 25 341 9.95e-78 242
Msa0886370 MtrunA17_Chr5g0402571 42.671 307 164 4 36 331 21 326 7.42e-76 236
Msa0886370 MtrunA17_Chr2g0292091 42.901 324 160 8 23 332 14 326 3.90e-75 235
Msa0886370 MtrunA17_Chr2g0292151 43.302 321 165 8 42 347 29 347 8.24e-75 235
Msa0886370 MtrunA17_Chr1g0188431 41.017 295 163 6 42 331 39 327 2.35e-74 233
Msa0886370 MtrunA17_Chr4g0070951 40.698 344 173 11 3 331 2 329 1.10e-73 231
Msa0886370 MtrunA17_Chr4g0046131 36.919 344 202 5 1 329 1 344 1.44e-72 229
Msa0886370 MtrunA17_Chr2g0292271 43.218 317 164 8 42 344 29 343 1.73e-72 229
Msa0886370 MtrunA17_Chr2g0292181 43.492 315 160 8 42 342 38 348 3.42e-72 228
Msa0886370 MtrunA17_Chr2g0292111 44.590 305 151 8 46 336 33 333 4.58e-72 228
Msa0886370 MtrunA17_Chr1g0175561 39.881 336 169 8 11 332 11 327 9.03e-72 226
Msa0886370 MtrunA17_Chr5g0405991 40.728 302 163 6 40 331 21 316 9.94e-72 226
Msa0886370 MtrunA17_Chr2g0320071 39.818 329 181 7 8 331 1 317 1.27e-71 225
Msa0886370 MtrunA17_Chr6g0477071 38.644 295 172 4 41 331 53 342 1.71e-71 226
Msa0886370 MtrunA17_Chr8g0371381 40.000 300 164 6 42 331 26 319 2.17e-71 225
Msa0886370 MtrunA17_Chr2g0292261 44.737 304 154 8 42 332 29 331 2.68e-71 226
Msa0886370 MtrunA17_Chr2g0291751 44.079 304 154 7 46 336 33 333 4.30e-71 225
Msa0886370 MtrunA17_Chr4g0075241 40.523 306 167 6 39 331 24 327 2.88e-70 222
Msa0886370 MtrunA17_Chr7g0254231 38.832 291 176 2 42 331 22 311 1.53e-69 220
Msa0886370 MtrunA17_Chr2g0320101 39.577 331 180 7 6 331 2 317 2.09e-69 219
Msa0886370 MtrunA17_Chr4g0053871 42.088 297 164 5 42 330 27 323 2.19e-69 220
Msa0886370 MtrunA17_Chr3g0128061 42.244 303 160 7 42 331 26 326 2.74e-69 220
Msa0886370 MtrunA17_Chr7g0258811 39.169 337 176 9 11 332 50 372 5.16e-69 220
Msa0886370 MtrunA17_Chr4g0063671 40.728 302 165 5 42 331 21 320 2.81e-68 217
Msa0886370 MtrunA17_Chr2g0320091 40.952 315 171 8 24 331 12 318 3.94e-68 216
Msa0886370 MtrunA17_Chr4g0072091 41.000 300 167 4 42 331 24 323 6.04e-68 216
Msa0886370 MtrunA17_Chr5g0401431 39.091 330 180 8 15 330 6 328 7.13e-68 216
Msa0886370 MtrunA17_Chr7g0254201 40.594 303 169 5 36 331 14 312 8.18e-68 216
Msa0886370 MtrunA17_Chr2g0299691 40.256 313 170 7 35 332 49 359 1.22e-67 216
Msa0886370 MtrunA17_Chr2g0292291 41.830 306 159 7 42 331 30 332 2.01e-67 216
Msa0886370 MtrunA17_Chr1g0194151 41.311 305 163 7 42 331 30 333 2.78e-67 215
Msa0886370 MtrunA17_Chr5g0404721 39.203 301 164 7 46 331 34 330 2.80e-67 214
Msa0886370 MtrunA17_Chr2g0320031 38.253 332 185 7 6 331 2 319 3.17e-67 214
Msa0886370 MtrunA17_Chr2g0279041 39.274 303 171 4 40 331 25 325 3.74e-67 214
Msa0886370 MtrunA17_Chr1g0204011 38.870 301 168 6 42 331 27 322 4.11e-67 214
Msa0886370 MtrunA17_Chr4g0013171 37.855 317 188 6 22 331 7 321 7.54e-67 213
Msa0886370 MtrunA17_Chr1g0148021 39.404 302 171 5 42 331 27 328 4.12e-66 211
Msa0886370 MtrunA17_Chr1g0157051 40.328 305 163 9 38 330 20 317 8.21e-66 211
Msa0886370 MtrunA17_Chr8g0372601 39.333 300 165 7 46 331 34 330 9.49e-66 211
Msa0886370 MtrunA17_Chr3g0106921 39.933 298 169 5 42 331 25 320 1.10e-65 210
Msa0886370 MtrunA17_Chr1g0197411 37.294 303 177 5 42 331 28 330 2.35e-65 210
Msa0886370 MtrunA17_Chr7g0225221 39.527 296 173 4 42 331 25 320 6.43e-65 208
Msa0886370 MtrunA17_Chr2g0296621 38.255 298 172 5 42 332 50 342 9.75e-65 208
Msa0886370 MtrunA17_Chr5g0432441 40.134 299 168 5 42 331 30 326 1.08e-64 208
Msa0886370 MtrunA17_Chr2g0320051 40.273 293 167 6 45 331 28 318 1.23e-64 207
Msa0886370 MtrunA17_Chr4g0013201 40.667 300 171 5 37 331 41 338 1.39e-64 208
Msa0886370 MtrunA17_Chr2g0322861 40.264 303 165 8 42 331 87 386 1.85e-64 209
Msa0886370 MtrunA17_Chr3g0129051 39.249 293 169 6 42 327 28 318 3.72e-64 206
Msa0886370 MtrunA17_Chr1g0155611 41.118 304 165 6 41 331 45 347 4.95e-64 207
Msa0886370 MtrunA17_Chr7g0268501 39.535 301 166 7 42 331 25 320 5.34e-64 206
Msa0886370 MtrunA17_Chr7g0268521 39.535 301 166 7 42 331 25 320 5.34e-64 206
Msa0886370 MtrunA17_Chr1g0194271 40.385 312 163 7 42 331 30 340 6.83e-64 206
Msa0886370 MtrunA17_Chr3g0114451 37.690 329 189 7 8 331 1 318 2.45e-63 204
Msa0886370 MtrunA17_Chr4g0013191 39.645 338 187 8 7 331 7 340 3.90e-63 204
Msa0886370 MtrunA17_Chr2g0320061 39.865 296 170 6 42 331 25 318 8.33e-63 202
Msa0886370 MtrunA17_Chr4g0068621 38.538 301 172 8 42 331 38 336 1.23e-62 203
Msa0886370 MtrunA17_Chr1g0181431 36.634 303 181 5 39 332 24 324 1.31e-62 202
Msa0886370 MtrunA17_Chr5g0400331 37.864 309 170 8 42 331 26 331 3.21e-62 202
Msa0886370 MtrunA17_Chr4g0013821 36.774 310 179 8 42 339 28 332 4.90e-62 201
Msa0886370 MtrunA17_Chr1g0164891 39.203 301 167 7 46 331 93 392 1.02e-61 202
Msa0886370 MtrunA17_Chr6g0460711 37.954 303 178 4 36 331 15 314 1.05e-61 200
Msa0886370 MtrunA17_Chr1g0181481 37.333 300 177 5 42 332 27 324 1.17e-61 200
Msa0886370 MtrunA17_Chr1g0181511 36.667 300 179 5 42 332 27 324 1.25e-61 200
Msa0886370 MtrunA17_Chr5g0438021 37.374 297 177 6 42 331 31 325 1.45e-61 200
Msa0886370 MtrunA17_Chr4g0076211 37.162 296 175 4 43 331 42 333 2.18e-61 199
Msa0886370 MtrunA17_Chr4g0024121 35.928 334 188 7 10 331 7 326 2.20e-61 199
Msa0886370 MtrunA17_Chr4g0013721 37.919 298 168 8 46 331 104 396 3.51e-61 201
Msa0886370 MtrunA17_Chr4g0013181 38.095 294 173 6 45 331 62 353 5.14e-61 199
Msa0886370 MtrunA17_Chr4g0038151 37.793 299 175 5 42 331 25 321 2.51e-60 196
Msa0886370 MtrunA17_Chr4g0038161 38.127 299 174 5 42 331 24 320 9.31e-60 195
Msa0886370 MtrunA17_Chr4g0074851 35.294 340 199 8 1 331 1 328 1.07e-59 195
Msa0886370 MtrunA17_Chr8g0364291 36.455 299 178 4 45 331 26 324 6.41e-59 193
Msa0886370 MtrunA17_Chr3g0129061 36.449 321 186 7 14 327 9 318 1.77e-58 192
Msa0886370 MtrunA17_Chr7g0244451 38.305 295 175 5 42 331 24 316 8.69e-58 190
Msa0886370 MtrunA17_Chr3g0136751 35.976 328 186 5 14 331 9 322 9.53e-58 190
Msa0886370 MtrunA17_Chr4g0043391 36.455 299 180 5 42 331 27 324 2.55e-57 189
Msa0886370 MtrunA17_Chr7g0244461 36.271 295 181 5 42 331 20 312 2.69e-57 188
Msa0886370 MtrunA17_Chr4g0038171 37.000 300 177 6 42 331 24 321 6.70e-57 187
Msa0886370 MtrunA17_Chr1g0213061 35.030 334 195 8 6 332 4 322 2.58e-55 184
Msa0886370 MtrunA17_Chr5g0432351 37.908 306 175 10 37 331 20 321 2.98e-55 183
Msa0886370 MtrunA17_Chr3g0129041 36.700 297 179 5 42 331 28 322 9.28e-55 182
Msa0886370 MtrunA17_Chr7g0224371 36.644 292 177 6 46 332 35 323 9.53e-55 182
Msa0886370 MtrunA17_Chr3g0107881 35.928 334 184 10 11 331 8 324 1.78e-53 179
Msa0886370 MtrunA17_Chr2g0329641 32.733 333 205 7 12 331 9 335 2.99e-53 179
Msa0886370 MtrunA17_Chr2g0316791 32.424 330 178 7 42 328 76 403 1.81e-52 178
Msa0886370 MtrunA17_Chr6g0451571 34.884 301 185 5 42 331 34 334 5.02e-52 175
Msa0886370 MtrunA17_Chr5g0432331 36.482 307 178 11 37 331 51 352 6.18e-52 176
Msa0886370 MtrunA17_Chr2g0316481 32.733 333 173 8 42 328 76 403 8.98e-52 177
Msa0886370 MtrunA17_Chr3g0106901 35.168 327 189 8 11 331 14 323 2.76e-51 173
Msa0886370 MtrunA17_Chr5g0413051 33.987 306 185 6 42 331 73 377 1.58e-50 172
Msa0886370 MtrunA17_Chr5g0432341 36.601 306 179 10 37 331 20 321 1.68e-50 171
Msa0886370 MtrunA17_Chr2g0316191 31.737 334 176 8 42 328 76 404 1.72e-50 173
Msa0886370 MtrunA17_Chr2g0316831 32.432 333 174 8 42 328 112 439 3.49e-50 173
Msa0886370 MtrunA17_Chr2g0279061 38.521 257 145 4 86 331 12 266 4.43e-50 168
Msa0886370 MtrunA17_Chr5g0421411 36.655 281 159 8 68 331 7 285 6.77e-50 168
Msa0886370 MtrunA17_Chr2g0311251 32.229 332 179 8 42 330 11 339 7.95e-50 170
Msa0886370 MtrunA17_Chr2g0311241 29.570 372 177 8 42 330 60 429 2.18e-48 168
Msa0886370 MtrunA17_Chr2g0278671 30.795 302 195 6 42 331 24 323 2.66e-41 147
Msa0886370 MtrunA17_Chr2g0292281 41.121 214 102 8 130 331 15 216 4.06e-40 141
Msa0886370 MtrunA17_Chr4g0004591 30.599 317 154 7 42 330 77 355 1.77e-38 140
Msa0886370 MtrunA17_Chr5g0432401 33.110 299 148 9 42 330 29 285 1.88e-36 133
Msa0886370 MtrunA17_Chr2g0316811 36.715 207 106 5 42 239 50 240 2.16e-35 131
Msa0886370 MtrunA17_Chr3g0114461 39.130 184 108 4 151 331 10 192 8.23e-32 118
Msa0886370 MtrunA17_Chr1g0181501 36.170 188 113 4 151 332 4 190 9.58e-29 110
Msa0886370 MtrunA17_Chr2g0316141 28.315 279 148 9 88 328 11 275 3.04e-22 94.7
Msa0886370 MtrunA17_Chr2g0316181 28.315 279 148 9 88 328 11 275 3.04e-22 94.7
Msa0886370 MtrunA17_Chr3g0114491 41.284 109 60 2 42 147 18 125 9.17e-22 89.7
Msa0886370 MtrunA17_Chr5g0423911 63.636 66 24 0 262 327 2 67 1.23e-20 85.9
Msa0886370 MtrunA17_Chr1g0181491 36.697 109 63 3 42 147 12 117 7.26e-17 76.6
Msa0886370 MtrunA17_Chr6g0468731 49.275 69 33 1 81 149 22 88 4.00e-15 70.1
Msa0886370 MtrunA17_Chr7g0268491 41.667 96 55 1 236 331 3 97 6.83e-15 69.7
Msa0886370 MtrunA17_Chr5g0432321 36.441 118 71 3 161 276 17 132 7.12e-14 67.8
Msa0886370 MtrunA17_Chr3g0124821 27.985 268 137 11 74 315 119 356 7.60e-12 65.9
Msa0886370 MtrunA17_Chr7g0254181 37.143 105 62 2 101 205 22 122 6.37e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0886370 AT1G71695.1 53.659 328 145 4 29 349 31 358 1.03e-123 360
Msa0886370 AT5G06730.1 42.363 347 173 9 1 332 1 335 3.61e-80 249
Msa0886370 AT2G18980.1 43.333 300 159 5 42 331 25 323 3.54e-78 243
Msa0886370 AT4G33420.1 39.938 323 174 5 13 331 19 325 7.27e-76 237
Msa0886370 AT5G19890.1 43.377 302 155 6 42 331 30 327 7.96e-76 237
Msa0886370 AT5G14130.1 41.472 299 166 3 42 331 32 330 2.12e-75 236
Msa0886370 AT4G33420.2 39.938 323 174 5 13 331 66 372 3.10e-75 237
Msa0886370 AT5G14130.2 39.697 330 175 5 11 331 57 371 4.12e-75 236
Msa0886370 AT4G30170.1 42.857 301 159 7 42 331 27 325 2.22e-73 231
Msa0886370 AT1G49570.1 41.776 304 162 6 38 327 44 346 1.87e-72 229
Msa0886370 AT5G06720.1 40.120 334 174 10 14 332 12 334 2.37e-72 228
Msa0886370 AT2G18140.1 38.253 332 190 7 13 331 6 335 3.68e-71 225
Msa0886370 AT5G64120.1 37.846 325 194 3 13 331 6 328 5.29e-71 224
Msa0886370 AT4G36430.1 39.465 299 166 7 46 331 34 330 1.59e-70 223
Msa0886370 AT2G24800.1 40.717 307 163 5 39 331 28 329 3.15e-70 223
Msa0886370 AT5G19880.1 40.196 306 166 6 42 331 25 329 4.45e-70 222
Msa0886370 AT2G34060.1 36.176 340 202 5 5 329 5 344 1.32e-69 221
Msa0886370 AT2G18150.1 39.465 299 166 7 46 331 40 336 9.61e-69 219
Msa0886370 AT4G08780.1 39.252 321 179 7 42 348 24 342 2.23e-68 218
Msa0886370 AT4G08770.1 39.875 321 177 7 42 348 24 342 2.28e-68 218
Msa0886370 AT4G26010.2 37.309 327 188 7 9 331 24 337 3.21e-68 218
Msa0886370 AT5G17820.1 38.851 296 169 4 42 331 24 313 4.13e-68 216
Msa0886370 AT4G26010.1 38.870 301 174 6 35 331 15 309 4.39e-68 216
Msa0886370 AT3G03670.1 40.323 310 166 7 36 331 17 321 1.44e-67 215
Msa0886370 AT5G17820.2 38.851 296 169 4 42 331 77 366 2.62e-67 216
Msa0886370 AT5G42180.1 40.264 303 164 6 39 330 20 316 1.34e-66 213
Msa0886370 AT5G51890.1 39.088 307 170 7 37 331 21 322 1.46e-66 213
Msa0886370 AT3G32980.1 37.394 353 192 10 6 343 6 344 2.17e-66 213
Msa0886370 AT2G38390.1 40.789 304 165 7 42 331 31 333 2.29e-66 213
Msa0886370 AT1G05260.1 38.762 307 174 7 37 331 21 325 2.72e-66 212
Msa0886370 AT2G41480.1 39.073 302 170 4 42 331 29 328 4.78e-66 212
Msa0886370 AT3G50990.1 38.487 304 176 5 39 331 38 341 7.46e-66 212
Msa0886370 AT5G39580.1 38.796 299 174 4 40 331 23 319 9.31e-66 211
Msa0886370 AT3G21770.1 38.206 301 172 7 42 330 29 327 1.57e-65 210
Msa0886370 AT5G05340.1 38.721 297 173 5 42 331 30 324 4.44e-65 209
Msa0886370 AT4G31760.1 39.274 303 166 6 42 331 29 326 5.24e-65 209
Msa0886370 AT1G30870.1 39.474 304 171 5 37 331 46 345 6.74e-65 209
Msa0886370 AT5G66390.1 38.127 299 172 6 45 331 36 333 7.84e-65 209
Msa0886370 AT4G37530.1 40.264 303 168 5 42 331 27 329 1.26e-64 208
Msa0886370 AT3G49120.1 37.461 323 182 7 42 350 32 348 2.07e-64 208
Msa0886370 AT2G38380.1 40.461 304 166 7 42 331 31 333 3.03e-64 208
Msa0886370 AT3G49960.1 38.614 303 173 5 42 331 27 329 3.62e-64 207
Msa0886370 AT4G37520.1 38.614 303 173 5 42 331 27 329 6.00e-64 206
Msa0886370 AT4G16270.1 37.954 303 171 8 42 331 50 348 1.75e-63 206
Msa0886370 AT5G58390.1 39.634 328 172 9 14 331 5 316 1.95e-63 204
Msa0886370 AT4G21960.1 34.862 327 199 6 14 331 6 327 2.78e-63 205
Msa0886370 AT3G49110.1 37.615 327 176 8 42 350 33 349 2.94e-63 205
Msa0886370 AT5G15180.1 36.070 341 196 7 1 331 1 329 4.57e-63 204
Msa0886370 AT3G17070.1 37.908 306 174 5 40 331 36 339 8.99e-63 204
Msa0886370 AT5G67400.1 38.614 303 173 5 42 331 27 329 9.48e-63 203
Msa0886370 AT2G35380.1 38.095 315 167 9 37 331 29 335 1.89e-62 202
Msa0886370 AT5G58400.1 37.919 298 175 5 42 331 30 325 1.05e-61 201
Msa0886370 AT1G14550.1 36.890 328 185 7 12 331 8 321 1.89e-61 199
Msa0886370 AT4G37520.2 37.954 303 172 6 42 331 27 326 3.07e-61 199
Msa0886370 AT5G24070.1 35.030 334 202 5 11 332 6 336 3.77e-61 199
Msa0886370 AT4G11290.1 37.500 304 174 7 42 331 25 326 4.66e-61 199
Msa0886370 AT1G44970.1 38.000 300 170 7 46 331 49 346 3.90e-60 197
Msa0886370 AT3G01190.1 35.890 326 189 7 15 331 7 321 4.29e-60 196
Msa0886370 AT2G22420.1 36.570 309 179 8 42 338 23 326 1.26e-59 195
Msa0886370 AT1G05240.1 36.577 298 175 6 42 327 26 321 2.36e-59 194
Msa0886370 AT1G05250.1 36.577 298 175 6 42 327 26 321 2.36e-59 194
Msa0886370 AT1G68850.1 36.570 309 174 9 42 331 30 335 2.36e-58 192
Msa0886370 AT2G39040.1 37.662 308 171 9 42 331 46 350 7.83e-58 191
Msa0886370 AT3G28200.1 36.486 296 182 3 42 331 21 316 7.99e-58 190
Msa0886370 AT4G17690.1 37.377 305 182 5 34 331 20 322 4.27e-57 189
Msa0886370 AT5G22410.1 35.385 325 185 8 15 327 10 321 5.74e-57 188
Msa0886370 AT2G43480.1 34.951 309 184 6 37 331 30 335 5.93e-57 188
Msa0886370 AT5G40150.1 35.690 297 184 4 42 331 32 328 1.66e-56 187
Msa0886370 AT1G14540.1 37.374 297 177 6 42 331 21 315 3.94e-56 186
Msa0886370 AT2G37130.1 35.333 300 182 6 42 331 30 327 1.07e-55 185
Msa0886370 AT1G24110.1 35.463 313 190 6 34 334 13 325 1.25e-55 185
Msa0886370 AT2G37130.2 35.354 297 180 6 45 331 2 296 1.36e-55 184
Msa0886370 AT1G34510.1 35.667 300 183 6 36 331 16 309 2.33e-55 184
Msa0886370 AT5G47000.1 36.913 298 180 4 42 331 33 330 5.69e-55 183
Msa0886370 AT5G64110.1 37.037 297 172 6 46 331 38 330 1.94e-54 182
Msa0886370 AT5G64100.1 36.271 295 175 5 46 331 41 331 2.31e-54 182
Msa0886370 AT1G77100.1 33.742 326 201 7 14 331 1 319 4.94e-54 180
Msa0886370 AT4G37530.2 40.625 256 139 5 42 284 27 282 1.21e-53 178
Msa0886370 AT4G33870.1 31.231 333 181 6 42 328 68 398 1.54e-51 176
Msa0886370 AT4G25980.1 30.195 308 190 6 42 331 26 326 1.69e-45 158
Msa0886370 AT2G35380.2 36.694 248 136 7 101 331 4 247 2.00e-44 153
Msa0886370 AT3G17070.2 36.260 262 150 6 84 331 18 276 1.32e-43 152
Msa0886370 AT5G39580.2 40.782 179 104 1 40 218 23 199 1.74e-39 140
Msa0886370 AT2G24800.2 41.379 174 93 3 39 208 28 196 1.19e-35 130
Msa0886370 AT4G25980.2 34.524 168 107 2 42 208 71 236 5.29e-31 119
Msa0886370 AT4G08390.2 28.462 260 146 11 74 315 125 362 1.75e-12 68.2
Msa0886370 AT4G08390.5 28.462 260 146 11 74 315 125 362 1.75e-12 68.2
Msa0886370 AT4G08390.1 28.462 260 146 11 74 315 125 362 1.75e-12 68.2
Msa0886370 AT4G08390.3 28.462 260 146 11 74 315 124 361 1.77e-12 68.2
Msa0886370 AT3G42570.1 33.333 108 68 2 101 206 44 149 9.55e-11 60.1

Find 79 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCTTCCACACTCTTTA+TGG 0.066029 6_1:+44736605 None:intergenic
CATCTGTGACATCAAAGTTT+TGG 0.266237 6_1:+44733459 None:intergenic
CTTCCATGATTGCTTTGTTC+AGG 0.273834 6_1:-44737310 Msa0886370:intron
ATTTGAAAACCTTGGTTAGA+TGG 0.281088 6_1:+44737370 None:intergenic
ACAGATGTTGTTGCATTATC+AGG 0.305416 6_1:-44733443 Msa0886370:CDS
GTGTTACCTGAATTTGCATT+AGG 0.308048 6_1:+44733314 None:intergenic
TGAAAACCATTGATGACATT+AGG 0.315664 6_1:-44736636 Msa0886370:CDS
GGCATTGGTTTGTGCCTTAG+AGG 0.329040 6_1:+44737467 None:intergenic
CCTAGTGGTACTGGAAAATT+AGG 0.331632 6_1:+44733575 None:intergenic
TTGTCCATTGTGGGGTCTGC+TGG 0.346257 6_1:+44733368 None:intergenic
GCTAAATGTAATGTGGTTAA+TGG 0.351004 6_1:-44733059 Msa0886370:CDS
GAAAACCATTGATGACATTA+GGG 0.352381 6_1:-44736635 Msa0886370:CDS
GGTGGTTGATCTCTTTCTCC+TGG 0.361258 6_1:+44736685 None:intergenic
TTCACACTTCCATGCCTCTA+AGG 0.365452 6_1:-44737481 Msa0886370:CDS
TTCAAGGTTAGGACATGTTT+GGG 0.374107 6_1:+44737407 None:intergenic
GGTGAGTCAGTTGAATGTTT+TGG 0.374761 6_1:-44733105 Msa0886370:CDS
TCTGTTCTCATGCCTCCATT+TGG 0.376449 6_1:+44736664 None:intergenic
TTTCAAGGTTAGGACATGTT+TGG 0.380053 6_1:+44737406 None:intergenic
TCGAATCAATATTCAAATCT+TGG 0.389629 6_1:+44733204 None:intergenic
TGTTACCTGAATTTGCATTA+GGG 0.407529 6_1:+44733315 None:intergenic
TGATTCGAGGACAAAGGGTT+TGG 0.411511 6_1:-44733189 Msa0886370:CDS
TTATCAGGTGCACACACATT+TGG 0.411956 6_1:-44733428 Msa0886370:CDS
TTTCACTAGTGGTGGGGCAT+TGG 0.416902 6_1:+44737452 None:intergenic
TCTCTTCTTCCTAGTGGTAC+TGG 0.420647 6_1:+44733566 None:intergenic
TAGTATGTTGTTGTTGATGT+TGG 0.425254 6_1:-44732933 Msa0886370:three_prime_UTR
TGTTTGGGTAAAGAAATTAT+AGG 0.444514 6_1:+44737422 None:intergenic
CTTGTTTGTTCATCAAATCA+AGG 0.451076 6_1:+44733243 None:intergenic
ACTTGCCCTAATGCAAATTC+AGG 0.452712 6_1:-44733320 Msa0886370:CDS
ATATCTACTTGAGTTTGCTA+TGG 0.458095 6_1:-44732831 Msa0886370:three_prime_UTR
GTTCTCATGCCTCCATTTGG+TGG 0.462989 6_1:+44736667 None:intergenic
TTACCTGAACAAAGCAATCA+TGG 0.472303 6_1:+44737307 None:intergenic
AGCAATCATGGAAGAAAATA+CGG 0.473199 6_1:+44737319 None:intergenic
GTGCTACTGGATGGAAGTCC+AGG 0.474173 6_1:-44736703 Msa0886370:CDS
TATAGAGTTTACTAGGAAAA+CGG 0.474767 6_1:+44736543 None:intergenic
AAGATTTGAATATTGATTCG+AGG 0.476214 6_1:-44733202 Msa0886370:CDS
TCAGACAATGGTCAAGCTCC+TGG 0.485320 6_1:-44737348 Msa0886370:CDS
CAAAGAGTAGAAAGAAGTGA+TGG 0.486453 6_1:+44737530 None:intergenic
TTTGTCAACTTTGGTGGAAG+AGG 0.487182 6_1:-44733021 Msa0886370:CDS
CTGTGCAGATATCACTGTCT+TGG 0.492534 6_1:-44736578 Msa0886370:CDS
AACTTTGGTGGAAGAGGGAA+TGG 0.499945 6_1:-44733015 Msa0886370:CDS
ACACTGCAAACCTAGACATA+AGG 0.502169 6_1:-44733295 Msa0886370:CDS
ATGTGATGGATCAGTGCTAC+TGG 0.506122 6_1:-44736716 Msa0886370:CDS
GAAAGAGATCAACCACCAAA+TGG 0.506240 6_1:-44736679 Msa0886370:CDS
AATATTGATTCGAGGACAAA+GGG 0.506986 6_1:-44733194 Msa0886370:CDS
GAAGTGTGAAGCAAATAGAA+TGG 0.507693 6_1:+44737494 None:intergenic
ATTGTCTGATTTGAAAACCT+TGG 0.509789 6_1:+44737362 None:intergenic
TTACTAGGAAAACGGCTTCA+CGG 0.511374 6_1:+44736551 None:intergenic
GCAGATATCACTGTCTTGGC+TGG 0.521345 6_1:-44736574 Msa0886370:CDS
TATTTGTTGTCGAATGTAGC+CGG 0.523163 6_1:+44733269 None:intergenic
TTTCCATCTCTTCTTCCTAG+TGG 0.525851 6_1:+44733560 None:intergenic
ATCAATATTCAAATCTTGGT+CGG 0.526116 6_1:+44733208 None:intergenic
TGGTTTGTGCCTTAGAGGCA+TGG 0.526746 6_1:+44737472 None:intergenic
ACAAAGAAATCAAACAAAGA+TGG 0.533032 6_1:-44737568 Msa0886370:exon
TTGTCAACTTTGGTGGAAGA+GGG 0.534684 6_1:-44733020 Msa0886370:CDS
TAGCCGGAGTCCTTATGTCT+AGG 0.536461 6_1:+44733285 None:intergenic
AAGAGCCCTAATGTCATCAA+TGG 0.538416 6_1:+44736630 None:intergenic
GACAACCCTTTCACTAGTGG+TGG 0.548158 6_1:+44737444 None:intergenic
GACTCTTGTTGTAATAAGAA+CGG 0.551154 6_1:-44732866 Msa0886370:three_prime_UTR
ATGCCCCACCACTAGTGAAA+GGG 0.551701 6_1:-44737449 Msa0886370:CDS
GAATATTGATTCGAGGACAA+AGG 0.570018 6_1:-44733195 Msa0886370:CDS
ATATGTATGTAGGGATGTGA+TGG 0.571667 6_1:-44736730 Msa0886370:intron
CTTGATTTGATGAACAAACA+AGG 0.578618 6_1:-44733242 Msa0886370:CDS
AAGAAAATACGGAGTAAACC+AGG 0.582511 6_1:+44737330 None:intergenic
CAAGACAGTGATATCTGCAC+AGG 0.588336 6_1:+44736579 None:intergenic
TAGGACAACCCTTTCACTAG+TGG 0.590703 6_1:+44737441 None:intergenic
TTGTCCATAAAGAGTGTGGA+AGG 0.591374 6_1:-44736609 Msa0886370:CDS
AATGCCCCACCACTAGTGAA+AGG 0.599723 6_1:-44737450 Msa0886370:CDS
GTACCACTAGGAAGAAGAGA+TGG 0.602871 6_1:-44733563 Msa0886370:CDS
ACAACCCTTTCACTAGTGGT+GGG 0.603594 6_1:+44737445 None:intergenic
CAACCCTTTCACTAGTGGTG+GGG 0.620262 6_1:+44737446 None:intergenic
AAATGTAATGTGGTTAATGG+TGG 0.620455 6_1:-44733056 Msa0886370:CDS
ACATTTGGTCGTGCACATTG+TGG 0.625822 6_1:-44733413 Msa0886370:CDS
GCTCTTGTCCATAAAGAGTG+TGG 0.630917 6_1:-44736613 Msa0886370:CDS
GATGGATCAGTGCTACTGGA+TGG 0.647755 6_1:-44736712 Msa0886370:CDS
AAACCTAGACATAAGGACTC+CGG 0.654634 6_1:-44733288 Msa0886370:CDS
CTCTCCAGCAGACCCCACAA+TGG 0.655386 6_1:-44733372 Msa0886370:CDS
CGTTAGAAACCATCTAACCA+AGG 0.656718 6_1:-44737379 Msa0886370:CDS
AGAGATCAACCACCAAATGG+AGG 0.657924 6_1:-44736676 Msa0886370:CDS
AATTCGTGCTAAATGTAATG+TGG 0.676115 6_1:-44733066 Msa0886370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATATAATATTTTTAT+AGG - chr6_1:44735523-44735542 Msa0886370:intron 0.0%
!!! TTATTAATGATATTTGTTAT+AGG + chr6_1:44733511-44733530 None:intergenic 10.0%
!! TGTATAAAATAAAAGTAAAA+TGG + chr6_1:44733830-44733849 None:intergenic 10.0%
!!! TATATTTTCCTTAAAAAAAA+AGG - chr6_1:44734075-44734094 Msa0886370:intron 10.0%
!!! ATATTTTCCTTAAAAAAAAA+GGG - chr6_1:44734076-44734095 Msa0886370:intron 10.0%
!!! TAAAATGAATATTTTTTTTG+GGG + chr6_1:44734464-44734483 None:intergenic 10.0%
!!! CAAGTTTTTTTTTTATTTTT+TGG + chr6_1:44735077-44735096 None:intergenic 10.0%
!!! TTTTATTTTTTTATTTTTGG+TGG + chr6_1:44735182-44735201 None:intergenic 10.0%
!!! AATACTTTTTTTTTTTTTGA+AGG + chr6_1:44735634-44735653 None:intergenic 10.0%
!!! CTTTTGATTTTTTTTTTTTT+GGG + chr6_1:44736148-44736167 None:intergenic 10.0%
!! AATGTCATAATAATATTAAA+TGG + chr6_1:44736361-44736380 None:intergenic 10.0%
!! AAAATTATCAACATAAAATG+AGG - chr6_1:44733264-44733283 Msa0886370:CDS 15.0%
!!! ATCTATATTAAAACCTATTT+TGG - chr6_1:44733315-44733334 Msa0886370:CDS 15.0%
!!! AGAATATAAAAAGTTTTGTT+AGG + chr6_1:44733565-44733584 None:intergenic 15.0%
!! AATGTATCAAAAAATTAGTA+GGG + chr6_1:44733903-44733922 None:intergenic 15.0%
!! TAATGTATCAAAAAATTAGT+AGG + chr6_1:44733904-44733923 None:intergenic 15.0%
!! TGCCTATAAAAAAAAAATTA+TGG - chr6_1:44734281-44734300 Msa0886370:intron 15.0%
!! GCCTATAAAAAAAAAATTAT+GGG - chr6_1:44734282-44734301 Msa0886370:intron 15.0%
!!! TCCCATAATTTTTTTTTTAT+AGG + chr6_1:44734286-44734305 None:intergenic 15.0%
!!! ATATTATTTTCAAAGGAAAT+AGG - chr6_1:44734317-44734336 Msa0886370:intron 15.0%
!! CAGCTAATTAAAAAATTATT+TGG - chr6_1:44734707-44734726 Msa0886370:intron 15.0%
!! TCACTGTTTAATTAATATAT+GGG + chr6_1:44734738-44734757 None:intergenic 15.0%
!! ATCACTGTTTAATTAATATA+TGG + chr6_1:44734739-44734758 None:intergenic 15.0%
!!! GTTTTTTTTTTATTTTTTGG+TGG + chr6_1:44735074-44735093 None:intergenic 15.0%
!!! ACAAAAAAATTTTATATGCA+GGG - chr6_1:44735134-44735153 Msa0886370:intron 15.0%
!!! ATTTTTTGAGTAAATCAAAT+TGG + chr6_1:44735427-44735446 None:intergenic 15.0%
!!! TCATAATTTTTTTGAATAAC+TGG + chr6_1:44735591-44735610 None:intergenic 15.0%
!!! TAATAATACTTTGAAGTTTA+AGG + chr6_1:44735871-44735890 None:intergenic 15.0%
!!! GCTTTTGATTTTTTTTTTTT+TGG + chr6_1:44736149-44736168 None:intergenic 15.0%
!! TGATACTATCTTAAAATTTA+TGG + chr6_1:44736332-44736351 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr6_1:44736509-44736528 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr6_1:44736508-44736527 Msa0886370:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr6_1:44736532-44736551 Msa0886370:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr6_1:44736635-44736654 Msa0886370:CDS 15.0%
!!! GTTTATTAATGCTTTTATTA+AGG - chr6_1:44737219-44737238 Msa0886370:intron 15.0%
!!! TATTTTTTTGCATGAATAAC+TGG + chr6_1:44733073-44733092 None:intergenic 20.0%
!!! ATGTTGATAATTTTTTCCTA+TGG + chr6_1:44733258-44733277 None:intergenic 20.0%
!!! ATATTAAAACCTATTTTGGT+TGG - chr6_1:44733319-44733338 Msa0886370:CDS 20.0%
!! TAATCTAATGAAATTCGTAT+GGG + chr6_1:44733407-44733426 None:intergenic 20.0%
!! ACAAGTTTGTATGTAATAAT+AGG + chr6_1:44733536-44733555 None:intergenic 20.0%
!!! AATAGTTGATATATGTATGT+AGG - chr6_1:44733605-44733624 Msa0886370:intron 20.0%
!!! ATAGTTGATATATGTATGTA+GGG - chr6_1:44733606-44733625 Msa0886370:intron 20.0%
!! ATGTATCAAAAAATTAGTAG+GGG + chr6_1:44733902-44733921 None:intergenic 20.0%
!!! ATATTAGAGACAAAATTTTG+TGG + chr6_1:44733949-44733968 None:intergenic 20.0%
!!! CTCTTTTCATTATTTCAATT+TGG - chr6_1:44734018-44734037 Msa0886370:intron 20.0%
!!! TTGTTTCTAAAATAGATCAA+TGG - chr6_1:44734113-44734132 Msa0886370:intron 20.0%
!! AATGCATAATAATATATGCA+AGG - chr6_1:44735026-44735045 Msa0886370:intron 20.0%
!!! TTTTTTTTATTTTTTGGTGG+TGG + chr6_1:44735071-44735090 None:intergenic 20.0%
!!! GACAAAAAAATTTTATATGC+AGG - chr6_1:44735133-44735152 Msa0886370:intron 20.0%
!!! CAAAAAAATTTTATATGCAG+GGG - chr6_1:44735135-44735154 Msa0886370:intron 20.0%
!!! TATTTTTTTATTTTTGGTGG+TGG + chr6_1:44735179-44735198 None:intergenic 20.0%
!! AATAATCGAGTTATAAACAT+CGG - chr6_1:44735274-44735293 Msa0886370:intron 20.0%
!!! TACATTTGAGATATTCAAAT+TGG + chr6_1:44735454-44735473 None:intergenic 20.0%
!!! TCCTTATAAAATATTTTACG+CGG - chr6_1:44735563-44735582 Msa0886370:intron 20.0%
!! TTAAAATATGCTTTACCTAA+AGG - chr6_1:44735925-44735944 Msa0886370:intron 20.0%
!! ACTATCTTAAAATTTATGGT+TGG + chr6_1:44736328-44736347 None:intergenic 20.0%
!! GTCATAATAATATTAAATGG+AGG + chr6_1:44736358-44736377 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr6_1:44736518-44736537 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr6_1:44736595-44736614 Msa0886370:CDS 20.0%
! TGTTTGGGTAAAGAAATTAT+AGG + chr6_1:44732926-44732945 None:intergenic 25.0%
! AAGTGAAGAATAACAAAGAA+TGG - chr6_1:44733128-44733147 Msa0886370:CDS 25.0%
! TCCGAATCTCAAAATATATA+CGG - chr6_1:44733207-44733226 Msa0886370:CDS 25.0%
! AATCTAATGAAATTCGTATG+GGG + chr6_1:44733406-44733425 None:intergenic 25.0%
! CTAATCTAATGAAATTCGTA+TGG + chr6_1:44733408-44733427 None:intergenic 25.0%
! TATAGAGTTTACTAGGAAAA+CGG + chr6_1:44733805-44733824 None:intergenic 25.0%
! CATCAAAAACATGATTAGTA+GGG + chr6_1:44733876-44733895 None:intergenic 25.0%
! ACATCAAAAACATGATTAGT+AGG + chr6_1:44733877-44733896 None:intergenic 25.0%
!!! ATTCACTCCCTTTTTTTTTA+AGG + chr6_1:44734086-44734105 None:intergenic 25.0%
!!! CTTTGAAATAAAAAGTCATG+TGG - chr6_1:44734170-44734189 Msa0886370:intron 25.0%
!!! TTTTTTATAGGCAAAGAAGT+AGG + chr6_1:44734274-44734293 None:intergenic 25.0%
! CAATCTTGATTATGTATCAA+CGG + chr6_1:44734580-44734599 None:intergenic 25.0%
!!! TTTTCTAAAACAATAGTGAG+AGG - chr6_1:44734814-44734833 Msa0886370:intron 25.0%
! ATAATAATATATGCAAGGTC+CGG - chr6_1:44735031-44735050 Msa0886370:intron 25.0%
!! CCAAATTTTTATATACTGTG+AGG + chr6_1:44735661-44735680 None:intergenic 25.0%
! CCTCACAGTATATAAAAATT+TGG - chr6_1:44735658-44735677 Msa0886370:intron 25.0%
! GTCAACATAAAATAACCTTT+AGG + chr6_1:44735943-44735962 None:intergenic 25.0%
!!! AAGTATTGAGTTATTTCTGT+TGG - chr6_1:44736029-44736048 Msa0886370:intron 25.0%
!!! GATTTTTTTTTTTTTGGGAG+AGG + chr6_1:44736143-44736162 None:intergenic 25.0%
! ATTTAAAAGCCTTCTTGTAT+TGG - chr6_1:44736172-44736191 Msa0886370:intron 25.0%
! GACTGTAGAATAAAAAATCA+AGG + chr6_1:44736743-44736762 None:intergenic 25.0%
!!! TGATTTTTTATTCTACAGTC+AGG - chr6_1:44736743-44736762 Msa0886370:intron 25.0%
! ATCAATATTCAAATCTTGGT+CGG + chr6_1:44737140-44737159 None:intergenic 25.0%
! TCGAATCAATATTCAAATCT+TGG + chr6_1:44737144-44737163 None:intergenic 25.0%
!!! AAGATTTGAATATTGATTCG+AGG - chr6_1:44737143-44737162 Msa0886370:intron 25.0%
!!! TGTTGGTTTTTTGTGTATTT+TGG - chr6_1:44737429-44737448 Msa0886370:CDS 25.0%
!!! GTTGGTTTTTTGTGTATTTT+GGG - chr6_1:44737430-44737449 Msa0886370:CDS 25.0%
!!! TTGGTTTTTTGTGTATTTTG+GGG - chr6_1:44737431-44737450 Msa0886370:CDS 25.0%
ATTTGAAAACCTTGGTTAGA+TGG + chr6_1:44732978-44732997 None:intergenic 30.0%
! ATTGTCTGATTTGAAAACCT+TGG + chr6_1:44732986-44733005 None:intergenic 30.0%
! AAGGTTTTCAAATCAGACAA+TGG - chr6_1:44732985-44733004 Msa0886370:exon 30.0%
AGCAATCATGGAAGAAAATA+CGG + chr6_1:44733029-44733048 None:intergenic 30.0%
!!! CCCGTATATATTTTGAGATT+CGG + chr6_1:44733211-44733230 None:intergenic 30.0%
CCGAATCTCAAAATATATAC+GGG - chr6_1:44733208-44733227 Msa0886370:CDS 30.0%
! CGAATTTCATTAGATTAGCT+TGG - chr6_1:44733410-44733429 Msa0886370:CDS 30.0%
! AATGTCATCAATGGTTTTCA+AGG + chr6_1:44733709-44733728 None:intergenic 30.0%
! TGAAAACCATTGATGACATT+AGG - chr6_1:44733709-44733728 Msa0886370:intron 30.0%
! GAAAACCATTGATGACATTA+GGG - chr6_1:44733710-44733729 Msa0886370:intron 30.0%
AATGGAGTATAGAGTTTACT+AGG + chr6_1:44733812-44733831 None:intergenic 30.0%
TAAAAAGTCATGTGGAGTTA+TGG - chr6_1:44734178-44734197 Msa0886370:intron 30.0%
! ACCTTTGTTGTCACATTAAA+CGG - chr6_1:44734362-44734381 Msa0886370:intron 30.0%
TTGAACAACTTCTTCTACTT+TGG - chr6_1:44734787-44734806 Msa0886370:intron 30.0%
TAATAATATATGCAAGGTCC+GGG - chr6_1:44735032-44735051 Msa0886370:intron 30.0%
TGGTATGACGAACAATTATT+TGG - chr6_1:44735352-44735371 Msa0886370:intron 30.0%
!! TTGAGCATCGATTAAATATG+TGG + chr6_1:44735396-44735415 None:intergenic 30.0%
! GCCGCGTAAAATATTTTATA+AGG + chr6_1:44735567-44735586 None:intergenic 30.0%
GAGTTGTCAAACAAAAGAAA+AGG + chr6_1:44735831-44735850 None:intergenic 30.0%
AAGAAAAGTCCAATACAAGA+AGG + chr6_1:44736184-44736203 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr6_1:44736426-44736445 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr6_1:44736427-44736446 Msa0886370:intron 30.0%
!!! TTTTTTATTCTACAGTCAGG+AGG - chr6_1:44736746-44736765 Msa0886370:intron 30.0%
!! GTAACATCTGTTTTGTTGAA+TGG + chr6_1:44736848-44736867 None:intergenic 30.0%
! ATCTGTGACATCAAAGTTTT+GGG + chr6_1:44736888-44736907 None:intergenic 30.0%
TGTTACCTGAATTTGCATTA+GGG + chr6_1:44737033-44737052 None:intergenic 30.0%
CTTGTTTGTTCATCAAATCA+AGG + chr6_1:44737105-44737124 None:intergenic 30.0%
! CTTGATTTGATGAACAAACA+AGG - chr6_1:44737103-44737122 Msa0886370:intron 30.0%
!! AATATTGATTCGAGGACAAA+GGG - chr6_1:44737151-44737170 Msa0886370:intron 30.0%
!!! AATGTTTTGGTTGGAAATCA+AGG - chr6_1:44737253-44737272 Msa0886370:intron 30.0%
AATTCGTGCTAAATGTAATG+TGG - chr6_1:44737279-44737298 Msa0886370:intron 30.0%
GCTAAATGTAATGTGGTTAA+TGG - chr6_1:44737286-44737305 Msa0886370:intron 30.0%
AAATGTAATGTGGTTAATGG+TGG - chr6_1:44737289-44737308 Msa0886370:intron 30.0%
! GAAATCTGTTTTGTCAACTT+TGG - chr6_1:44737315-44737334 Msa0886370:CDS 30.0%
! TAGTATGTTGTTGTTGATGT+TGG - chr6_1:44737412-44737431 Msa0886370:CDS 30.0%
! GACTCTTGTTGTAATAAGAA+CGG - chr6_1:44737479-44737498 Msa0886370:CDS 30.0%
!! ATATCTACTTGAGTTTGCTA+TGG - chr6_1:44737514-44737533 Msa0886370:CDS 30.0%
CAAAGAGTAGAAAGAAGTGA+TGG + chr6_1:44732818-44732837 None:intergenic 35.0%
GAAGTGTGAAGCAAATAGAA+TGG + chr6_1:44732854-44732873 None:intergenic 35.0%
TTCAAGGTTAGGACATGTTT+GGG + chr6_1:44732941-44732960 None:intergenic 35.0%
TTTCAAGGTTAGGACATGTT+TGG + chr6_1:44732942-44732961 None:intergenic 35.0%
!! CTAACGATGTTTTCAAGGTT+AGG + chr6_1:44732952-44732971 None:intergenic 35.0%
! GGTTTCTAACGATGTTTTCA+AGG + chr6_1:44732957-44732976 None:intergenic 35.0%
AAGAAAATACGGAGTAAACC+AGG + chr6_1:44733018-44733037 None:intergenic 35.0%
TTACCTGAACAAAGCAATCA+TGG + chr6_1:44733041-44733060 None:intergenic 35.0%
!!! ACCTATTTTGGTTGGTTTAG+TGG - chr6_1:44733327-44733346 Msa0886370:CDS 35.0%
ACCACTAAACCAACCAAAAT+AGG + chr6_1:44733331-44733350 None:intergenic 35.0%
ATATGTATGTAGGGATGTGA+TGG - chr6_1:44733615-44733634 Msa0886370:intron 35.0%
ACCGTTTAATGTGACAACAA+AGG + chr6_1:44734366-44734385 None:intergenic 35.0%
AAATTTGAGCTTAGCTCAGT+TGG - chr6_1:44734996-44735015 Msa0886370:intron 35.0%
AATAATATATGCAAGGTCCG+GGG - chr6_1:44735033-44735052 Msa0886370:intron 35.0%
!!! TTTTATTTTTTGGTGGTGGC+CGG + chr6_1:44735067-44735086 None:intergenic 35.0%
! AAAATTTTATATGCAGGGGC+CGG - chr6_1:44735139-44735158 Msa0886370:intron 35.0%
!!! TTTTTATTTTTGGTGGTGGC+CGG + chr6_1:44735175-44735194 None:intergenic 35.0%
CATAAAATGTCAGACTCTCA+TGG - chr6_1:44735332-44735351 Msa0886370:intron 35.0%
AACCAAAGTCTTTGATCAAG+TGG + chr6_1:44735684-44735703 None:intergenic 35.0%
!! ACTTTTAAGTCTTGCAACGT+GGG + chr6_1:44735762-44735781 None:intergenic 35.0%
!! TACTTTTAAGTCTTGCAACG+TGG + chr6_1:44735763-44735782 None:intergenic 35.0%
!! GTTATTTCTGTTGGAACATG+AGG - chr6_1:44736038-44736057 Msa0886370:intron 35.0%
! TTGGACTTTTCTTGTTGCAT+TGG - chr6_1:44736191-44736210 Msa0886370:intron 35.0%
TTTCTTGTTGCATTGGACTT+TGG - chr6_1:44736198-44736217 Msa0886370:intron 35.0%
!! CACGACAAAACTGACTTTTA+AGG + chr6_1:44736294-44736313 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr6_1:44736557-44736576 Msa0886370:CDS 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr6_1:44736561-44736580 Msa0886370:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr6_1:44736661-44736680 Msa0886370:CDS 35.0%
!! TCTGTTTTGTTGAATGGTTG+TGG + chr6_1:44736842-44736861 None:intergenic 35.0%
! CATCTGTGACATCAAAGTTT+TGG + chr6_1:44736889-44736908 None:intergenic 35.0%
ACAGATGTTGTTGCATTATC+AGG - chr6_1:44736902-44736921 Msa0886370:intron 35.0%
!!! GTTTTTGAGGTTTTGAGCTA+GGG + chr6_1:44737005-44737024 None:intergenic 35.0%
!!! TGTTTTTGAGGTTTTGAGCT+AGG + chr6_1:44737006-44737025 None:intergenic 35.0%
GTGTTACCTGAATTTGCATT+AGG + chr6_1:44737034-44737053 None:intergenic 35.0%
!! TATTTGTTGTCGAATGTAGC+CGG + chr6_1:44737079-44737098 None:intergenic 35.0%
!! GAATATTGATTCGAGGACAA+AGG - chr6_1:44737150-44737169 Msa0886370:intron 35.0%
!!! AGTCAGTTGAATGTTTTGGT+TGG - chr6_1:44737244-44737263 Msa0886370:intron 35.0%
! ATCTGTTTTGTCAACTTTGG+TGG - chr6_1:44737318-44737337 Msa0886370:CDS 35.0%
CGTTAGAAACCATCTAACCA+AGG - chr6_1:44732966-44732985 Msa0886370:three_prime_UTR 40.0%
! CTTCCATGATTGCTTTGTTC+AGG - chr6_1:44733035-44733054 Msa0886370:CDS 40.0%
CTCAAAATATATACGGGCCA+AGG - chr6_1:44733214-44733233 Msa0886370:CDS 40.0%
!!! GTGGTGCTGGCTTAAAATTT+TGG - chr6_1:44733346-44733365 Msa0886370:CDS 40.0%
GAAAGAGATCAACCACCAAA+TGG - chr6_1:44733666-44733685 Msa0886370:intron 40.0%
AAGAGCCCTAATGTCATCAA+TGG + chr6_1:44733718-44733737 None:intergenic 40.0%
! TTGTCCATAAAGAGTGTGGA+AGG - chr6_1:44733736-44733755 Msa0886370:intron 40.0%
CAATCCTTCCACACTCTTTA+TGG + chr6_1:44733743-44733762 None:intergenic 40.0%
TTACTAGGAAAACGGCTTCA+CGG + chr6_1:44733797-44733816 None:intergenic 40.0%
GAGACAAAAACATCCCAACT+AGG + chr6_1:44734237-44734256 None:intergenic 40.0%
GAAGTAGGAACAGTATCAAG+AGG + chr6_1:44734259-44734278 None:intergenic 40.0%
TCAAAGGAAATAGGAGACAG+TGG - chr6_1:44734326-44734345 Msa0886370:intron 40.0%
TAGACAATCCGACAACTGAT+CGG - chr6_1:44734647-44734666 Msa0886370:intron 40.0%
GATCGGTAGGTGAAAATTAC+AGG - chr6_1:44734664-44734683 Msa0886370:intron 40.0%
!!! TTTATTTTTTGGTGGTGGCC+GGG + chr6_1:44735066-44735085 None:intergenic 40.0%
! AAATTTTATATGCAGGGGCC+GGG - chr6_1:44735140-44735159 Msa0886370:intron 40.0%
!!! TTTTATTTTTGGTGGTGGCC+GGG + chr6_1:44735174-44735193 None:intergenic 40.0%
! GAGAGTCTGACATTTTATGC+TGG + chr6_1:44735331-44735350 None:intergenic 40.0%
CTTCTAGCAAGACTTTGGTT+GGG + chr6_1:44735713-44735732 None:intergenic 40.0%
ACTTCTAGCAAGACTTTGGT+TGG + chr6_1:44735714-44735733 None:intergenic 40.0%
CTAGACTTCTAGCAAGACTT+TGG + chr6_1:44735718-44735737 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr6_1:44736665-44736684 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr6_1:44736560-44736579 Msa0886370:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr6_1:44736665-44736684 Msa0886370:CDS 40.0%
! CCTAGTGGTACTGGAAAATT+AGG + chr6_1:44736773-44736792 None:intergenic 40.0%
! CCTAATTTTCCAGTACCACT+AGG - chr6_1:44736770-44736789 Msa0886370:intron 40.0%
TTTCCATCTCTTCTTCCTAG+TGG + chr6_1:44736788-44736807 None:intergenic 40.0%
TTATCAGGTGCACACACATT+TGG - chr6_1:44736917-44736936 Msa0886370:intron 40.0%
!! CATTAGGGCAAGTGTTTTTG+AGG + chr6_1:44737018-44737037 None:intergenic 40.0%
ACTTGCCCTAATGCAAATTC+AGG - chr6_1:44737025-44737044 Msa0886370:intron 40.0%
ACACTGCAAACCTAGACATA+AGG - chr6_1:44737050-44737069 Msa0886370:intron 40.0%
AAACCTAGACATAAGGACTC+CGG - chr6_1:44737057-44737076 Msa0886370:intron 40.0%
! GGTGAGTCAGTTGAATGTTT+TGG - chr6_1:44737240-44737259 Msa0886370:intron 40.0%
TTTGTCAACTTTGGTGGAAG+AGG - chr6_1:44737324-44737343 Msa0886370:CDS 40.0%
TTGTCAACTTTGGTGGAAGA+GGG - chr6_1:44737325-44737344 Msa0886370:CDS 40.0%
TTCACACTTCCATGCCTCTA+AGG - chr6_1:44732864-44732883 Msa0886370:three_prime_UTR 45.0%
ACAACCCTTTCACTAGTGGT+GGG + chr6_1:44732903-44732922 None:intergenic 45.0%
TAGGACAACCCTTTCACTAG+TGG + chr6_1:44732907-44732926 None:intergenic 45.0%
!! GCCAAGGTTTTATCCATGGT+GGG - chr6_1:44733230-44733249 Msa0886370:CDS 45.0%
!! CCAAGGTTTTATCCATGGTG+GGG - chr6_1:44733231-44733250 Msa0886370:CDS 45.0%
!! TTTGGTTGGTTTAGTGGTGC+TGG - chr6_1:44733333-44733352 Msa0886370:CDS 45.0%
!! ATGTGATGGATCAGTGCTAC+TGG - chr6_1:44733629-44733648 Msa0886370:intron 45.0%
AGAGATCAACCACCAAATGG+AGG - chr6_1:44733669-44733688 Msa0886370:intron 45.0%
TCTGTTCTCATGCCTCCATT+TGG + chr6_1:44733684-44733703 None:intergenic 45.0%
GCTCTTGTCCATAAAGAGTG+TGG - chr6_1:44733732-44733751 Msa0886370:intron 45.0%
CAAGACAGTGATATCTGCAC+AGG + chr6_1:44733769-44733788 None:intergenic 45.0%
CTGTGCAGATATCACTGTCT+TGG - chr6_1:44733767-44733786 Msa0886370:intron 45.0%
AGTTGGGTGTCAACCTAGTT+GGG - chr6_1:44734221-44734240 Msa0886370:intron 45.0%
TTCACCTACCGATCAGTTGT+CGG + chr6_1:44734658-44734677 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG - chr6_1:44735001-44735020 Msa0886370:intron 45.0%
!!! TTATTTTTTGGTGGTGGCCG+GGG + chr6_1:44735065-44735084 None:intergenic 45.0%
! AATTTTATATGCAGGGGCCG+GGG - chr6_1:44735141-44735160 Msa0886370:intron 45.0%
!!! TTTATTTTTGGTGGTGGCCG+GGG + chr6_1:44735173-44735192 None:intergenic 45.0%
GGCCACTTGATCAAAGACTT+TGG - chr6_1:44735679-44735698 Msa0886370:intron 45.0%
!! CAGTTTTGTCGTGTTGCGTT+AGG - chr6_1:44736301-44736320 Msa0886370:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr6_1:44736664-44736683 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr6_1:44736664-44736683 Msa0886370:CDS 45.0%
TCTCTTCTTCCTAGTGGTAC+TGG + chr6_1:44736782-44736801 None:intergenic 45.0%
GTACCACTAGGAAGAAGAGA+TGG - chr6_1:44736782-44736801 Msa0886370:intron 45.0%
ACATTTGGTCGTGCACATTG+TGG - chr6_1:44736932-44736951 Msa0886370:intron 45.0%
!! CTAGGGTTTTGTCCATTGTG+GGG + chr6_1:44736988-44737007 None:intergenic 45.0%
!! GCTAGGGTTTTGTCCATTGT+GGG + chr6_1:44736989-44737008 None:intergenic 45.0%
!! AGCTAGGGTTTTGTCCATTG+TGG + chr6_1:44736990-44737009 None:intergenic 45.0%
TGATTCGAGGACAAAGGGTT+TGG - chr6_1:44737156-44737175 Msa0886370:intron 45.0%
AACTTTGGTGGAAGAGGGAA+TGG - chr6_1:44737330-44737349 Msa0886370:CDS 45.0%
!! ACTTTAATATTAATTTATAT+AGG + chr6_1:44733112-44733131 None:intergenic 5.0%
!!! TTTTATTTTATACATTTTTT+TGG - chr6_1:44733836-44733855 Msa0886370:intron 5.0%
!!! ATAATTTATATTATTTTCAA+AGG - chr6_1:44734310-44734329 Msa0886370:intron 5.0%
!!! TTAAAATGAATATTTTTTTT+GGG + chr6_1:44734465-44734484 None:intergenic 5.0%
!!! ATTAAAATGAATATTTTTTT+TGG + chr6_1:44734466-44734485 None:intergenic 5.0%
!!! AGTTTTTATTTTTTTATTTT+TGG + chr6_1:44735185-44735204 None:intergenic 5.0%
! TGGTTTGTGCCTTAGAGGCA+TGG + chr6_1:44732876-44732895 None:intergenic 50.0%
!! GGCATTGGTTTGTGCCTTAG+AGG + chr6_1:44732881-44732900 None:intergenic 50.0%
! TTTCACTAGTGGTGGGGCAT+TGG + chr6_1:44732896-44732915 None:intergenic 50.0%
AATGCCCCACCACTAGTGAA+AGG - chr6_1:44732895-44732914 Msa0886370:three_prime_UTR 50.0%
ATGCCCCACCACTAGTGAAA+GGG - chr6_1:44732896-44732915 Msa0886370:three_prime_UTR 50.0%
CAACCCTTTCACTAGTGGTG+GGG + chr6_1:44732902-44732921 None:intergenic 50.0%
GACAACCCTTTCACTAGTGG+TGG + chr6_1:44732904-44732923 None:intergenic 50.0%
TCAGACAATGGTCAAGCTCC+TGG - chr6_1:44732997-44733016 Msa0886370:CDS 50.0%
!! ACGGGCCAAGGTTTTATCCA+TGG - chr6_1:44733226-44733245 Msa0886370:CDS 50.0%
!! GGCCAAGGTTTTATCCATGG+TGG - chr6_1:44733229-44733248 Msa0886370:CDS 50.0%
CCCCACCATGGATAAAACCT+TGG + chr6_1:44733234-44733253 None:intergenic 50.0%
! TTATCCATGGTGGGGTCCAT+AGG - chr6_1:44733239-44733258 Msa0886370:CDS 50.0%
! TTTTCCTATGGACCCCACCA+TGG + chr6_1:44733246-44733265 None:intergenic 50.0%
! GATGGATCAGTGCTACTGGA+TGG - chr6_1:44733633-44733652 Msa0886370:intron 50.0%
GGTGGTTGATCTCTTTCTCC+TGG + chr6_1:44733663-44733682 None:intergenic 50.0%
GTTCTCATGCCTCCATTTGG+TGG + chr6_1:44733681-44733700 None:intergenic 50.0%
GCAGATATCACTGTCTTGGC+TGG - chr6_1:44733771-44733790 Msa0886370:intron 50.0%
GGAGTTATGGTGAGAGACGA+TGG - chr6_1:44734191-44734210 Msa0886370:intron 50.0%
GTTATGGTGAGAGACGATGG+AGG - chr6_1:44734194-44734213 Msa0886370:intron 50.0%
AGACGATGGAGGTGACAGTT+GGG - chr6_1:44734205-44734224 Msa0886370:intron 50.0%
CAGTTGGGTGTCAACCTAGT+TGG - chr6_1:44734220-44734239 Msa0886370:intron 50.0%
CAATCCGACAACTGATCGGT+AGG - chr6_1:44734651-44734670 Msa0886370:intron 50.0%
TAGCCGGAGTCCTTATGTCT+AGG + chr6_1:44737063-44737082 None:intergenic 50.0%
! GTGCTACTGGATGGAAGTCC+AGG - chr6_1:44733642-44733661 Msa0886370:intron 55.0%
GAGACGATGGAGGTGACAGT+TGG - chr6_1:44734204-44734223 Msa0886370:intron 55.0%
TTGTCCATTGTGGGGTCTGC+TGG + chr6_1:44736980-44736999 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG - chr6_1:44735045-44735064 Msa0886370:intron 60.0%
CTCTCCAGCAGACCCCACAA+TGG - chr6_1:44736973-44736992 Msa0886370:intron 60.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr6_1:44735053-44735072 None:intergenic 70.0%
AGGGGCCGGGGTTCAAACCC+CGG - chr6_1:44735153-44735172 Msa0886370:intron 70.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr6_1:44735053-44735072 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 44732780 44737587 44732780 ID=Msa0886370;Name=Msa0886370
chr6_1 mRNA 44732780 44737587 44732780 ID=Msa0886370-mRNA-1;Parent=Msa0886370;Name=Msa0886370-mRNA-1;_AED=0.33;_eAED=0.33;_QI=16|1|1|1|1|1|3|215|352
chr6_1 exon 44732780 44733606 44732780 ID=Msa0886370-mRNA-1:exon:9618;Parent=Msa0886370-mRNA-1
chr6_1 exon 44736555 44736740 44736555 ID=Msa0886370-mRNA-1:exon:9617;Parent=Msa0886370-mRNA-1
chr6_1 exon 44737311 44737587 44737311 ID=Msa0886370-mRNA-1:exon:9616;Parent=Msa0886370-mRNA-1
chr6_1 five_prime_UTR 44737572 44737587 44737572 ID=Msa0886370-mRNA-1:five_prime_utr;Parent=Msa0886370-mRNA-1
chr6_1 CDS 44737311 44737571 44737311 ID=Msa0886370-mRNA-1:cds;Parent=Msa0886370-mRNA-1
chr6_1 CDS 44736555 44736740 44736555 ID=Msa0886370-mRNA-1:cds;Parent=Msa0886370-mRNA-1
chr6_1 CDS 44732995 44733606 44732995 ID=Msa0886370-mRNA-1:cds;Parent=Msa0886370-mRNA-1
chr6_1 three_prime_UTR 44732780 44732994 44732780 ID=Msa0886370-mRNA-1:three_prime_utr;Parent=Msa0886370-mRNA-1
Gene Sequence

>Msa0886370

ATGGCTAAGAATAGTGCTTCCATCACTTCTTTCTACTCTTTGCTTTTGATATCTTCCATTCTATTTGCTTCACACTTCCATGCCTCTAAGGCACAAACCAATGCCCCACCACTAGTGAAAGGGTTGTCCTATAATTTCTTTACCCAAACATGTCCTAACCTTGAAAACATCGTTAGAAACCATCTAACCAAGGTTTTCAAATCAGACAATGGTCAAGCTCCTGGTTTACTCCGTATTTTCTTCCATGATTGCTTTGTTCAGGGATGTGATGGATCAGTGCTACTGGATGGAAGTCCAGGAGAAAGAGATCAACCACCAAATGGAGGCATGAGAACAGAAGCCTTGAAAACCATTGATGACATTAGGGCTCTTGTCCATAAAGAGTGTGGAAGGATTGTTTCCTGTGCAGATATCACTGTCTTGGCTGGCCGTGAAGCCGTTTTCCTATCAGGAGGACCTAATTTTCCAGTACCACTAGGAAGAAGAGATGGAAAAACTTTTAGCATTAAAGAAACAAGCAATCTTCCACAACCATTCAACAAAACAGATGTTACACTCAAAGTTTTTGCAGCCCAAAACTTTGATGTCACAGATGTTGTTGCATTATCAGGTGCACACACATTTGGTCGTGCACATTGTGGTACATTCTTCAATAGACTCTCTCCAGCAGACCCCACAATGGACAAAACCCTAGCTCAAAACCTCAAAAACACTTGCCCTAATGCAAATTCAGGTAACACTGCAAACCTAGACATAAGGACTCCGGCTACATTCGACAACAAATACTACCTTGATTTGATGAACAAACAAGGTTTGTTCACATCCGACCAAGATTTGAATATTGATTCGAGGACAAAGGGTTTGGTTAATGATTTCGCTGTTAATCAGAATTTGTTCTTTGAGAAGTTTATTAATGCTTTTATTAAGGTGAGTCAGTTGAATGTTTTGGTTGGAAATCAAGGTGAAATTCGTGCTAAATGTAATGTGGTTAATGGTGGTAAGAAATCTGTTTTGTCAACTTTGGTGGAAGAGGGAATGGACTTGATTGAGCAATTTTAA
Protein sequence

>Msa0886370

MAKNSASITSFYSLLLISSILFASHFHASKAQTNAPPLVKGLSYNFFTQTCPNLENIVRNHLTKVFKSDNGQAPGLLRIFFHDCFVQGCDGSVLLDGSPGERDQPPNGGMRTEALKTIDDIRALVHKECGRIVSCADITVLAGREAVFLSGGPNFPVPLGRRDGKTFSIKETSNLPQPFNKTDVTLKVFAAQNFDVTDVVALSGAHTFGRAHCGTFFNRLSPADPTMDKTLAQNLKNTCPNANSGNTANLDIRTPATFDNKYYLDLMNKQGLFTSDQDLNIDSRTKGLVNDFAVNQNLFFEKFINAFIKVSQLNVLVGNQGEIRAKCNVVNGGKKSVLSTLVEEGMDLIEQF*