Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475390 | XP_003602861.2 | 91.061 | 358 | 32 | 0 | 1 | 358 | 1 | 358 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475390 | sp|Q9FZ95|PUP3_ARATH | 56.725 | 342 | 136 | 2 | 13 | 354 | 1 | 330 | 5.40e-138 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475390 | G7J4H6 | 91.061 | 358 | 32 | 0 | 1 | 358 | 1 | 358 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099350 | Msa0475390 | 0.821174 | 4.646066e-53 | -8.615850e-47 |
| Msa0099430 | Msa0475390 | 0.820616 | 6.244052e-53 | -8.615850e-47 |
| Msa0148000 | Msa0475390 | 0.838309 | 3.105452e-57 | -8.615850e-47 |
| Msa0379530 | Msa0475390 | 0.918606 | 1.265849e-86 | -8.615850e-47 |
| Msa0382670 | Msa0475390 | -0.827369 | 1.624837e-54 | -8.615850e-47 |
| Msa0404210 | Msa0475390 | 0.984694 | 2.610087e-161 | -8.615850e-47 |
| Msa0460680 | Msa0475390 | 0.808330 | 3.265581e-50 | -8.615850e-47 |
| Msa0475390 | Msa0476730 | 0.800117 | 1.675453e-48 | -8.615850e-47 |
| Msa0475390 | Msa0578890 | 0.820040 | 8.461323e-53 | -8.615850e-47 |
| Msa0475390 | Msa0610850 | 0.811334 | 7.374049e-51 | -8.615850e-47 |
| Msa0475390 | Msa0646180 | 0.800229 | 1.589725e-48 | -8.615850e-47 |
| Msa0475390 | Msa0791780 | 0.802849 | 4.616021e-49 | -8.615850e-47 |
| Msa0475390 | Msa0935930 | 0.804373 | 2.228321e-49 | -8.615850e-47 |
| Msa0475390 | Msa1018210 | 0.820472 | 6.736059e-53 | -8.615850e-47 |
| Msa0475390 | Msa1055710 | 0.832664 | 8.308064e-56 | -8.615850e-47 |
| Msa0475390 | Msa1154770 | 0.800214 | 1.600756e-48 | -8.615850e-47 |
| Msa0475390 | Msa1465700 | -0.804863 | 1.761467e-49 | -8.615850e-47 |
| Msa0341520 | Msa0475390 | 0.808799 | 2.593673e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475390 | MtrunA17_Chr3g0132551 | 88.301 | 359 | 41 | 1 | 1 | 358 | 1 | 359 | 0.0 | 641 |
| Msa0475390 | MtrunA17_Chr3g0132561 | 82.402 | 358 | 29 | 1 | 1 | 358 | 1 | 324 | 0.0 | 584 |
| Msa0475390 | MtrunA17_Chr5g0426921 | 64.045 | 356 | 118 | 4 | 5 | 358 | 9 | 356 | 3.50e-152 | 432 |
| Msa0475390 | MtrunA17_Chr2g0296491 | 35.692 | 325 | 188 | 4 | 14 | 335 | 67 | 373 | 2.13e-63 | 207 |
| Msa0475390 | MtrunA17_Chr2g0283381 | 31.161 | 353 | 228 | 4 | 6 | 354 | 28 | 369 | 1.07e-59 | 197 |
| Msa0475390 | MtrunA17_Chr3g0102091 | 35.494 | 324 | 192 | 4 | 24 | 343 | 55 | 365 | 4.86e-59 | 195 |
| Msa0475390 | MtrunA17_Chr7g0249781 | 33.903 | 351 | 211 | 5 | 11 | 355 | 20 | 355 | 5.87e-58 | 192 |
| Msa0475390 | MtrunA17_Chr4g0055041 | 32.938 | 337 | 209 | 6 | 25 | 357 | 44 | 367 | 9.01e-56 | 186 |
| Msa0475390 | MtrunA17_Chr2g0296481 | 34.473 | 351 | 207 | 6 | 9 | 353 | 39 | 372 | 3.35e-55 | 185 |
| Msa0475390 | MtrunA17_Chr8g0346091 | 31.928 | 332 | 208 | 2 | 17 | 348 | 54 | 367 | 9.14e-51 | 173 |
| Msa0475390 | MtrunA17_Chr6g0483671 | 33.784 | 148 | 98 | 0 | 196 | 343 | 4 | 151 | 4.01e-24 | 97.4 |
| Msa0475390 | MtrunA17_Chr2g0313931 | 35.338 | 133 | 71 | 3 | 16 | 148 | 32 | 149 | 1.09e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475390 | AT1G28220.1 | 56.725 | 342 | 136 | 2 | 13 | 354 | 1 | 330 | 5.49e-139 | 399 |
| Msa0475390 | AT1G28230.1 | 57.270 | 337 | 139 | 2 | 13 | 348 | 1 | 333 | 2.56e-129 | 375 |
| Msa0475390 | AT2G33750.2 | 54.810 | 343 | 145 | 1 | 12 | 354 | 2 | 334 | 2.70e-128 | 372 |
| Msa0475390 | AT2G33750.1 | 53.107 | 354 | 145 | 2 | 12 | 354 | 2 | 345 | 1.68e-124 | 362 |
| Msa0475390 | AT4G18220.1 | 34.251 | 327 | 201 | 4 | 28 | 354 | 57 | 369 | 8.04e-56 | 187 |
| Msa0475390 | AT4G18205.1 | 35.227 | 352 | 204 | 6 | 11 | 357 | 34 | 366 | 3.26e-54 | 183 |
| Msa0475390 | AT4G18210.1 | 33.639 | 327 | 203 | 3 | 28 | 354 | 57 | 369 | 7.20e-52 | 177 |
| Msa0475390 | AT1G30840.2 | 34.012 | 344 | 206 | 7 | 3 | 342 | 11 | 337 | 2.46e-50 | 173 |
| Msa0475390 | AT1G30840.1 | 34.012 | 344 | 206 | 7 | 3 | 342 | 11 | 337 | 2.46e-50 | 173 |
| Msa0475390 | AT4G18195.1 | 33.140 | 344 | 214 | 5 | 10 | 352 | 39 | 367 | 5.19e-48 | 167 |
| Msa0475390 | AT4G18197.1 | 35.385 | 325 | 187 | 5 | 32 | 352 | 59 | 364 | 3.57e-47 | 164 |
| Msa0475390 | AT1G44750.6 | 30.347 | 346 | 224 | 3 | 11 | 354 | 26 | 356 | 6.39e-43 | 153 |
| Msa0475390 | AT1G44750.2 | 30.347 | 346 | 224 | 3 | 11 | 354 | 26 | 356 | 6.39e-43 | 153 |
| Msa0475390 | AT1G44750.1 | 30.347 | 346 | 224 | 3 | 11 | 354 | 38 | 368 | 8.61e-43 | 153 |
| Msa0475390 | AT1G44750.7 | 32.932 | 249 | 166 | 1 | 107 | 354 | 44 | 292 | 6.66e-41 | 146 |
| Msa0475390 | AT1G44750.5 | 32.932 | 249 | 166 | 1 | 107 | 354 | 44 | 292 | 6.66e-41 | 146 |
| Msa0475390 | AT1G44750.4 | 32.932 | 249 | 166 | 1 | 107 | 354 | 44 | 292 | 6.66e-41 | 146 |
| Msa0475390 | AT1G44750.8 | 32.932 | 249 | 166 | 1 | 107 | 354 | 44 | 292 | 6.66e-41 | 146 |
| Msa0475390 | AT1G44750.3 | 32.932 | 249 | 166 | 1 | 107 | 354 | 44 | 292 | 6.66e-41 | 146 |
| Msa0475390 | AT4G18190.1 | 31.944 | 360 | 225 | 6 | 3 | 354 | 20 | 367 | 1.19e-39 | 144 |
| Msa0475390 | AT2G24220.1 | 33.333 | 306 | 186 | 1 | 32 | 337 | 54 | 341 | 4.66e-39 | 142 |
| Msa0475390 | AT2G24220.2 | 33.225 | 307 | 187 | 1 | 31 | 337 | 71 | 359 | 6.43e-39 | 142 |
| Msa0475390 | AT4G08700.1 | 26.648 | 349 | 233 | 4 | 12 | 355 | 28 | 358 | 1.92e-35 | 133 |
| Msa0475390 | AT5G41160.1 | 26.006 | 323 | 223 | 3 | 34 | 355 | 54 | 361 | 5.81e-32 | 123 |
| Msa0475390 | AT1G19770.1 | 26.797 | 306 | 203 | 4 | 47 | 341 | 88 | 383 | 2.37e-24 | 103 |
| Msa0475390 | AT1G57943.1 | 26.230 | 366 | 229 | 11 | 11 | 352 | 37 | 385 | 1.42e-20 | 92.4 |
| Msa0475390 | AT1G57943.2 | 26.230 | 366 | 229 | 11 | 11 | 352 | 36 | 384 | 1.78e-20 | 92.0 |
| Msa0475390 | AT1G57990.1 | 24.654 | 361 | 237 | 10 | 11 | 352 | 33 | 377 | 8.32e-19 | 87.4 |
| Msa0475390 | AT1G57980.1 | 27.371 | 369 | 217 | 14 | 11 | 352 | 37 | 381 | 1.81e-17 | 83.6 |
| Msa0475390 | AT1G47603.1 | 26.816 | 358 | 216 | 11 | 17 | 351 | 49 | 383 | 1.47e-16 | 80.9 |
| Msa0475390 | AT1G09860.1 | 23.404 | 376 | 244 | 13 | 1 | 352 | 14 | 369 | 7.29e-11 | 63.5 |
Find 101 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGGAAGCTAGAAATTT+TGG | 0.100824 | 3_3:+78573653 | Msa0475390:CDS |
| GATTGCAAACAATGACTTTA+AGG | 0.119715 | 3_3:+78571403 | Msa0475390:CDS |
| ATACAATGCTTGTGTTTCTT+AGG | 0.196464 | 3_3:-78570544 | None:intergenic |
| TGTCACTTGTACTTTCTCTT+TGG | 0.257169 | 3_3:+78573870 | Msa0475390:CDS |
| GTCACTTGTACTTTCTCTTT+GGG | 0.266053 | 3_3:+78573871 | Msa0475390:CDS |
| CATCACTTATTCTCTTGTTA+TGG | 0.272446 | 3_3:+78571328 | Msa0475390:CDS |
| TACGGTTGGTTCTGGTGTTT+TGG | 0.295285 | 3_3:+78571163 | Msa0475390:CDS |
| AAGCTGAGATGCTATTATTA+AGG | 0.319246 | 3_3:-78571063 | None:intergenic |
| TTTAATCTCACCATAGAAAT+AGG | 0.320060 | 3_3:-78573903 | None:intergenic |
| GTAATATATCTACCTTAAAA+AGG | 0.321222 | 3_3:+78570588 | Msa0475390:five_prime_UTR |
| CTCATAGATATTGATAAGTA+TGG | 0.352605 | 3_3:+78574110 | Msa0475390:three_prime_UTR |
| GCCACTCTCTTCTGTGCTAT+AGG | 0.354346 | 3_3:+78571377 | Msa0475390:CDS |
| TGGTGGATGGTGGAGGATGG+TGG | 0.364115 | 3_3:-78570896 | None:intergenic |
| TCTATAATAAAGATTGTTGT+TGG | 0.366551 | 3_3:+78574185 | Msa0475390:three_prime_UTR |
| TCCACGGCGGCCAACGTGTC+TGG | 0.372039 | 3_3:+78570790 | Msa0475390:CDS |
| GTTGCTGCTTCTGCATTGTA+TGG | 0.384050 | 3_3:+78571257 | Msa0475390:CDS |
| ATGGAGATGGTGGTGGATGG+TGG | 0.385779 | 3_3:-78570906 | None:intergenic |
| AATGAGCATCAAGGGGAAAC+TGG | 0.387179 | 3_3:-78570835 | None:intergenic |
| TCAAGGGGAAACTGGCGGTT+TGG | 0.389802 | 3_3:-78570827 | None:intergenic |
| ATTAAGGAACCAGTGGAAAC+TGG | 0.398731 | 3_3:-78571047 | None:intergenic |
| ACGTGGTTTAGAAATATAGA+TGG | 0.416127 | 3_3:+78573949 | Msa0475390:exon |
| TCTTCGCATATGGCGTTGCT+CGG | 0.418830 | 3_3:+78571021 | Msa0475390:CDS |
| TGGTGGTGGATGGTGGAGGA+TGG | 0.424033 | 3_3:-78570899 | None:intergenic |
| TTCTTCGCAGCCGCCTTCAT+CGG | 0.427701 | 3_3:+78570972 | Msa0475390:CDS |
| TGGATGGTGGAGGATGGTGG+TGG | 0.430332 | 3_3:-78570893 | None:intergenic |
| CTGCTCCGTGATTGGAATGT+AGG | 0.430513 | 3_3:+78573993 | Msa0475390:three_prime_UTR |
| CCAAAATTTCTAGCTTCCCT+TGG | 0.438019 | 3_3:-78573653 | None:intergenic |
| ACTGCCAACACTTCTGTTAG+TGG | 0.444558 | 3_3:-78573809 | None:intergenic |
| AACTTAATGCTCAGATATGT+AGG | 0.450118 | 3_3:-78570630 | None:intergenic |
| GTGATGGAGATGGTGGTGGA+TGG | 0.456025 | 3_3:-78570909 | None:intergenic |
| TTGTGCCTCATCGTTAGTGT+CGG | 0.457199 | 3_3:+78573763 | Msa0475390:CDS |
| GCTCGGCTTCCAGTTTCCAC+TGG | 0.458963 | 3_3:+78571038 | Msa0475390:CDS |
| GAAGAAAATAGAAGGTTTCA+TGG | 0.460569 | 3_3:-78570955 | None:intergenic |
| GGGGAGCACCGGAGGTACCT+AGG | 0.461356 | 3_3:-78570746 | None:intergenic |
| GACGACTATCTCTTCGCATA+TGG | 0.467374 | 3_3:+78571011 | Msa0475390:CDS |
| GTGGAGGATGGTGGTGGAGA+CGG | 0.467478 | 3_3:-78570887 | None:intergenic |
| TGAAATAGAGACGCATTATG+AGG | 0.471366 | 3_3:-78570767 | None:intergenic |
| GCCGGTGAGGATTCCGATGA+AGG | 0.474028 | 3_3:-78570985 | None:intergenic |
| TTCTGTGGTGATGGAGATGG+TGG | 0.476825 | 3_3:-78570916 | None:intergenic |
| GAGATGGTGGTGGATGGTGG+AGG | 0.481262 | 3_3:-78570903 | None:intergenic |
| ACTTAATGCTCAGATATGTA+GGG | 0.482451 | 3_3:-78570629 | None:intergenic |
| TGTGCCTCATCGTTAGTGTC+GGG | 0.483652 | 3_3:+78573764 | Msa0475390:CDS |
| AGGGGAAACTGGCGGTTTGG+AGG | 0.487139 | 3_3:-78570824 | None:intergenic |
| TAGATGGGTCAAACTCTTGA+GGG | 0.495608 | 3_3:+78573965 | Msa0475390:exon |
| GAAACTGGCGGTTTGGAGGA+AGG | 0.498472 | 3_3:-78570820 | None:intergenic |
| GCGGCTGCGAAGAAAATAGA+AGG | 0.499053 | 3_3:-78570963 | None:intergenic |
| TGTGGTGATGGAGATGGTGG+TGG | 0.506685 | 3_3:-78570913 | None:intergenic |
| TGCTCCGTGATTGGAATGTA+GGG | 0.513072 | 3_3:+78573994 | Msa0475390:three_prime_UTR |
| GGGAGCACCGGAGGTACCTA+GGG | 0.520001 | 3_3:-78570745 | None:intergenic |
| TGAAATTGTAGGTGATTCCA+AGG | 0.522629 | 3_3:+78573636 | Msa0475390:intron |
| TGCGAGGGGAATGAGCATCA+AGG | 0.523525 | 3_3:-78570844 | None:intergenic |
| GAGAACACACACATGGAAGA+AGG | 0.533724 | 3_3:+78570657 | Msa0475390:exon |
| ACGAGTAGTGATCGTCCTGC+TGG | 0.534270 | 3_3:+78571194 | Msa0475390:CDS |
| TCACTTGTACTTTCTCTTTG+GGG | 0.538433 | 3_3:+78573872 | Msa0475390:CDS |
| GCCAGACACGTTGGCCGCCG+TGG | 0.541479 | 3_3:-78570791 | None:intergenic |
| ACGCATTATGAGGGGAGCAC+CGG | 0.545670 | 3_3:-78570757 | None:intergenic |
| GAAATAGAGACGCATTATGA+GGG | 0.548591 | 3_3:-78570766 | None:intergenic |
| TGGTGAGATTAAACATGCTA+AGG | 0.555926 | 3_3:+78573913 | Msa0475390:CDS |
| ATAGATGGGTCAAACTCTTG+AGG | 0.556122 | 3_3:+78573964 | Msa0475390:exon |
| TTAATAATAGCATCTCAGCT+TGG | 0.557663 | 3_3:+78571065 | Msa0475390:CDS |
| ATGTTAGCCCTAGGTACCTC+CGG | 0.565369 | 3_3:+78570738 | Msa0475390:CDS |
| TGCTATTATTAAGGAACCAG+TGG | 0.565701 | 3_3:-78571054 | None:intergenic |
| AATTGTCTCATGTTAGCCCT+AGG | 0.571570 | 3_3:+78570729 | Msa0475390:CDS |
| CACACACATGGAAGAAGGAA+AGG | 0.574939 | 3_3:+78570662 | Msa0475390:exon |
| CTACATTCCAATCACGGAGC+AGG | 0.577783 | 3_3:-78573992 | None:intergenic |
| GCGAGGGGAATGAGCATCAA+GGG | 0.578405 | 3_3:-78570843 | None:intergenic |
| GTTACCACTAACAGAAGTGT+TGG | 0.579485 | 3_3:+78573805 | Msa0475390:CDS |
| GCCTTCATCGGAATCCTCAC+CGG | 0.585533 | 3_3:+78570984 | Msa0475390:CDS |
| CGTGGTTTAGAAATATAGAT+GGG | 0.586265 | 3_3:+78573950 | Msa0475390:exon |
| TGAGACAATTTACTATCAGA+AGG | 0.586602 | 3_3:-78570716 | None:intergenic |
| AAGCACTTACTATGTTGTGT+TGG | 0.589316 | 3_3:+78573685 | Msa0475390:CDS |
| ATAACAAGAGAATAAGTGAT+GGG | 0.603082 | 3_3:-78571326 | None:intergenic |
| CATAACAAGAGAATAAGTGA+TGG | 0.603170 | 3_3:-78571327 | None:intergenic |
| CATTATGAGGGGAGCACCGG+AGG | 0.606065 | 3_3:-78570754 | None:intergenic |
| TATACCCTACATTCCAATCA+CGG | 0.608300 | 3_3:-78573998 | None:intergenic |
| ATGCGTCTCTATTTCATCCA+CGG | 0.610236 | 3_3:+78570774 | Msa0475390:CDS |
| TTATAAACCAACTCAACCGA+AGG | 0.615345 | 3_3:-78571290 | None:intergenic |
| GAAGAGATAGTCGTCAAGGC+CGG | 0.619969 | 3_3:-78571003 | None:intergenic |
| GTATGATGTATGAGATTGCG+AGG | 0.623652 | 3_3:-78570860 | None:intergenic |
| ATGCGAAGAGATAGTCGTCA+AGG | 0.632876 | 3_3:-78571007 | None:intergenic |
| TGGTTGTTAGTGCGTTAATG+TGG | 0.639944 | 3_3:+78573705 | Msa0475390:CDS |
| TATGATGTATGAGATTGCGA+GGG | 0.643247 | 3_3:-78570859 | None:intergenic |
| GTTTAGAGAGAACACACACA+TGG | 0.644169 | 3_3:+78570650 | Msa0475390:exon |
| CAATGCAGAAGCAGCAACCG+TGG | 0.648575 | 3_3:-78571252 | None:intergenic |
| CTTAATGCTCAGATATGTAG+GGG | 0.649584 | 3_3:-78570628 | None:intergenic |
| GGTGAGGATTCCGATGAAGG+CGG | 0.655496 | 3_3:-78570982 | None:intergenic |
| ACCAACCGTAAGCAAAACAA+TGG | 0.657982 | 3_3:-78571150 | None:intergenic |
| GCCTATAGCACAGAAGAGAG+TGG | 0.659041 | 3_3:-78571378 | None:intergenic |
| CGAGGGGAATGAGCATCAAG+GGG | 0.659390 | 3_3:-78570842 | None:intergenic |
| AGATGGGTCAAACTCTTGAG+GGG | 0.660235 | 3_3:+78573966 | Msa0475390:exon |
| GAAATTGTAGGTGATTCCAA+GGG | 0.661077 | 3_3:+78573637 | Msa0475390:intron |
| ACTGGCGGTTTGGAGGAAGG+CGG | 0.661208 | 3_3:-78570817 | None:intergenic |
| AAATAGAGACGCATTATGAG+GGG | 0.661247 | 3_3:-78570765 | None:intergenic |
| AGGCGGAGAGCCAGACACGT+TGG | 0.665988 | 3_3:-78570800 | None:intergenic |
| GATGGGTCAAACTCTTGAGG+GGG | 0.688539 | 3_3:+78573967 | Msa0475390:exon |
| GATAGTCGTCAAGGCCGGTG+AGG | 0.690358 | 3_3:-78570998 | None:intergenic |
| GAGCATCAAGGGGAAACTGG+CGG | 0.694601 | 3_3:-78570832 | None:intergenic |
| AATACCCGACACTAACGATG+AGG | 0.705820 | 3_3:-78573768 | None:intergenic |
| ATGATGTATGAGATTGCGAG+GGG | 0.708086 | 3_3:-78570858 | None:intergenic |
| AAGGCAGAAAAGAAGAAACG+TGG | 0.749200 | 3_3:+78573932 | Msa0475390:CDS |
| CGTCTCTATTTCATCCACGG+CGG | 0.772458 | 3_3:+78570777 | Msa0475390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATATATACCTTTTTA+AGG | - | chr3_3:78570603-78570622 | None:intergenic | 10.0% |
| !!! | ATTATTTTCTCAAAATTTAT+CGG | + | chr3_3:78571655-78571674 | Msa0475390:intron | 10.0% |
| !!! | CTAAATCTTTAAAAAAAATA+AGG | + | chr3_3:78572403-78572422 | Msa0475390:intron | 10.0% |
| !!! | TTTTAACAATTAATATTAAC+AGG | + | chr3_3:78572592-78572611 | Msa0475390:intron | 10.0% |
| !! | TTAGATCTATAAAAATAAAA+AGG | + | chr3_3:78572974-78572993 | Msa0475390:intron | 10.0% |
| !! | AATAAATTTAATGTAACAAA+TGG | + | chr3_3:78573203-78573222 | Msa0475390:intron | 10.0% |
| !! | AAGAAAAAAGAATAATGAAA+AGG | + | chr3_3:78572302-78572321 | Msa0475390:intron | 15.0% |
| !! | AGAAAAAGATAATAATGAAA+AGG | + | chr3_3:78572346-78572365 | Msa0475390:intron | 15.0% |
| !! | ATAAAGTTAATAGCTTAAAT+TGG | - | chr3_3:78572570-78572589 | None:intergenic | 15.0% |
| !! | AACTTCAAGTAATATAATAT+AGG | + | chr3_3:78572790-78572809 | Msa0475390:intron | 15.0% |
| !! | CTATAAAAATAAAAAGGAAA+TGG | + | chr3_3:78572980-78572999 | Msa0475390:intron | 15.0% |
| !!! | CTTTTCATTTTTTTTTCTTT+CGG | - | chr3_3:78573022-78573041 | None:intergenic | 15.0% |
| !! | TTATTTGTATAGAAAATTGA+GGG | - | chr3_3:78573162-78573181 | None:intergenic | 15.0% |
| !!! | TAGAAAAATATGTTGTTTAA+GGG | - | chr3_3:78573310-78573329 | None:intergenic | 15.0% |
| !!! | ATAGAAAAATATGTTGTTTA+AGG | - | chr3_3:78573311-78573330 | None:intergenic | 15.0% |
| !!! | ATTAAATGTCTTACTTTTTT+AGG | + | chr3_3:78574058-78574077 | Msa0475390:three_prime_UTR | 15.0% |
| !!! | TTAAATGTCTTACTTTTTTA+GGG | + | chr3_3:78574059-78574078 | Msa0475390:three_prime_UTR | 15.0% |
| !! | TTATAGAAAAAGTTGTTAAA+GGG | - | chr3_3:78574172-78574191 | None:intergenic | 15.0% |
| !! | ATTATAGAAAAAGTTGTTAA+AGG | - | chr3_3:78574173-78574192 | None:intergenic | 15.0% |
| !! | GTAATATATCTACCTTAAAA+AGG | + | chr3_3:78570588-78570607 | Msa0475390:five_prime_UTR | 20.0% |
| !!! | GATTATATTTAGTTTTTCTG+TGG | - | chr3_3:78570934-78570953 | None:intergenic | 20.0% |
| !! | GAGAAAATAATTATAAATGC+CGG | - | chr3_3:78571646-78571665 | None:intergenic | 20.0% |
| !! | AAAAATTAACAATTATGTCC+TGG | - | chr3_3:78571824-78571843 | None:intergenic | 20.0% |
| !! | TCCAAAGATAAAATTATATG+CGG | + | chr3_3:78572241-78572260 | Msa0475390:intron | 20.0% |
| !!! | TTCATTATTGTTTTTTGTGT+TGG | - | chr3_3:78572451-78572470 | None:intergenic | 20.0% |
| !! | CACAAAAAACAATAATGAAA+AGG | + | chr3_3:78572452-78572471 | Msa0475390:intron | 20.0% |
| !! | CGAAAGAAAAAAAAATGAAA+AGG | + | chr3_3:78573020-78573039 | Msa0475390:intron | 20.0% |
| !!! | ATGAAAAGGAAACTTTTATA+TGG | + | chr3_3:78573034-78573053 | Msa0475390:intron | 20.0% |
| !! | GTTATTTGTATAGAAAATTG+AGG | - | chr3_3:78573163-78573182 | None:intergenic | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | + | chr3_3:78573326-78573345 | Msa0475390:intron | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | + | chr3_3:78573326-78573345 | Msa0475390:intron | 20.0% |
| ! | ATAACAAGAGAATAAGTGAT+GGG | - | chr3_3:78571329-78571348 | None:intergenic | 25.0% |
| !!! | CTTTAAGGTAAGATTATGTT+AGG | + | chr3_3:78571418-78571437 | Msa0475390:intron | 25.0% |
| !! | AGAGTTTGAATTTTACTAAG+TGG | + | chr3_3:78571717-78571736 | Msa0475390:intron | 25.0% |
| ! | TGCATCAACAAAAATGAATA+TGG | + | chr3_3:78571995-78572014 | Msa0475390:intron | 25.0% |
| ! | AAGTCAACAATTAAATTCAG+TGG | + | chr3_3:78572023-78572042 | Msa0475390:intron | 25.0% |
| ! | CTAAATCTATAAAAAGGAAC+TGG | + | chr3_3:78572165-78572184 | Msa0475390:intron | 25.0% |
| !! | ACCGCATATAATTTTATCTT+TGG | - | chr3_3:78572245-78572264 | None:intergenic | 25.0% |
| ! | AGATAAAATTATATGCGGTT+CGG | + | chr3_3:78572246-78572265 | Msa0475390:intron | 25.0% |
| !!! | TTTTTTCTTTCTTTCCGTTA+CGG | - | chr3_3:78572291-78572310 | None:intergenic | 25.0% |
| ! | ATAAATGCAGTCTAATATGA+AGG | - | chr3_3:78572645-78572664 | None:intergenic | 25.0% |
| !!! | TAGAAAATTGAGGGTATTTT+TGG | - | chr3_3:78573153-78573172 | None:intergenic | 25.0% |
| !! | TGTTGTTTAAGGGTATAATT+TGG | - | chr3_3:78573300-78573319 | None:intergenic | 25.0% |
| ! | TATTATTACTAGCGAAAAGA+CGG | - | chr3_3:78573565-78573584 | None:intergenic | 25.0% |
| ! | AAAAGAACTGTGATCAATAA+AGG | + | chr3_3:78573589-78573608 | Msa0475390:intron | 25.0% |
| !! | GATATTGGATTTGAAATTGT+AGG | + | chr3_3:78573625-78573644 | Msa0475390:intron | 25.0% |
| ! | TTTAATCTCACCATAGAAAT+AGG | - | chr3_3:78573906-78573925 | None:intergenic | 25.0% |
| !!! | TTACTTTTTTAGGGAAAGAA+GGG | + | chr3_3:78574068-78574087 | Msa0475390:three_prime_UTR | 25.0% |
| ! | CTCATAGATATTGATAAGTA+TGG | + | chr3_3:78574110-78574129 | Msa0475390:three_prime_UTR | 25.0% |
| ACTTAATGCTCAGATATGTA+GGG | - | chr3_3:78570632-78570651 | None:intergenic | 30.0% | |
| AACTTAATGCTCAGATATGT+AGG | - | chr3_3:78570633-78570652 | None:intergenic | 30.0% | |
| TGAGACAATTTACTATCAGA+AGG | - | chr3_3:78570719-78570738 | None:intergenic | 30.0% | |
| !!! | ATTTAGTTTTTCTGTGGTGA+TGG | - | chr3_3:78570928-78570947 | None:intergenic | 30.0% |
| GAAGAAAATAGAAGGTTTCA+TGG | - | chr3_3:78570958-78570977 | None:intergenic | 30.0% | |
| AAGCTGAGATGCTATTATTA+AGG | - | chr3_3:78571066-78571085 | None:intergenic | 30.0% | |
| TTAATAATAGCATCTCAGCT+TGG | + | chr3_3:78571065-78571084 | Msa0475390:CDS | 30.0% | |
| CATAACAAGAGAATAAGTGA+TGG | - | chr3_3:78571330-78571349 | None:intergenic | 30.0% | |
| CATCACTTATTCTCTTGTTA+TGG | + | chr3_3:78571328-78571347 | Msa0475390:CDS | 30.0% | |
| GATTGCAAACAATGACTTTA+AGG | + | chr3_3:78571403-78571422 | Msa0475390:CDS | 30.0% | |
| AGGTAAGATTATGTTAGGTA+AGG | + | chr3_3:78571423-78571442 | Msa0475390:intron | 30.0% | |
| TATATGAAAACCTTGTTGCA+TGG | + | chr3_3:78571563-78571582 | Msa0475390:intron | 30.0% | |
| GATTCAAACCCTAATTGATT+AGG | + | chr3_3:78571788-78571807 | Msa0475390:intron | 30.0% | |
| AAACCCTAATTGATTAGGTT+TGG | + | chr3_3:78571793-78571812 | Msa0475390:intron | 30.0% | |
| GATCCAAACCTAATCAATTA+GGG | - | chr3_3:78571799-78571818 | None:intergenic | 30.0% | |
| AGATCCAAACCTAATCAATT+AGG | - | chr3_3:78571800-78571819 | None:intergenic | 30.0% | |
| !! | TCTGGTTTCGATCAATTTTT+AGG | + | chr3_3:78572203-78572222 | Msa0475390:intron | 30.0% |
| TATAGATCTAACTACCATTG+CGG | - | chr3_3:78572965-78572984 | None:intergenic | 30.0% | |
| !!! | AAATTGAGGGTATTTTTGGA+AGG | - | chr3_3:78573149-78573168 | None:intergenic | 30.0% |
| CGTTAGTACAATAAAAAGAG+CGG | + | chr3_3:78573521-78573540 | Msa0475390:intron | 30.0% | |
| ATTATTACTAGCGAAAAGAC+GGG | - | chr3_3:78573564-78573583 | None:intergenic | 30.0% | |
| GGAACACTAATATGAGATAT+TGG | + | chr3_3:78573610-78573629 | Msa0475390:intron | 30.0% | |
| AAAATTCCAAGCAGAAAAAG+CGG | + | chr3_3:78573847-78573866 | Msa0475390:CDS | 30.0% | |
| ACGTGGTTTAGAAATATAGA+TGG | + | chr3_3:78573949-78573968 | Msa0475390:exon | 30.0% | |
| CGTGGTTTAGAAATATAGAT+GGG | + | chr3_3:78573950-78573969 | Msa0475390:exon | 30.0% | |
| !!! | CTTACTTTTTTAGGGAAAGA+AGG | + | chr3_3:78574067-78574086 | Msa0475390:three_prime_UTR | 30.0% |
| CTTAATGCTCAGATATGTAG+GGG | - | chr3_3:78570631-78570650 | None:intergenic | 35.0% | |
| AAATAGAGACGCATTATGAG+GGG | - | chr3_3:78570768-78570787 | None:intergenic | 35.0% | |
| GAAATAGAGACGCATTATGA+GGG | - | chr3_3:78570769-78570788 | None:intergenic | 35.0% | |
| TGAAATAGAGACGCATTATG+AGG | - | chr3_3:78570770-78570789 | None:intergenic | 35.0% | |
| TATGATGTATGAGATTGCGA+GGG | - | chr3_3:78570862-78570881 | None:intergenic | 35.0% | |
| TGCTATTATTAAGGAACCAG+TGG | - | chr3_3:78571057-78571076 | None:intergenic | 35.0% | |
| AAGAAGAAAAGCGAAAAACG+CGG | - | chr3_3:78571096-78571115 | None:intergenic | 35.0% | |
| !! | AAACGCCATTGTTTTGCTTA+CGG | + | chr3_3:78571145-78571164 | Msa0475390:CDS | 35.0% |
| !!! | TGCGATTAGTTTTTCAACCA+CGG | + | chr3_3:78571235-78571254 | Msa0475390:CDS | 35.0% |
| !!! | GTATGGATTTGTTTTGCCTT+CGG | + | chr3_3:78571274-78571293 | Msa0475390:CDS | 35.0% |
| TTATAAACCAACTCAACCGA+AGG | - | chr3_3:78571293-78571312 | None:intergenic | 35.0% | |
| ACATGACGCAAGTCATATAT+CGG | - | chr3_3:78571612-78571631 | None:intergenic | 35.0% | |
| CACAGTAGTTGAGTTTATGA+AGG | + | chr3_3:78571744-78571763 | Msa0475390:intron | 35.0% | |
| TTATGAAGGAGAATCTCTTC+TGG | + | chr3_3:78571758-78571777 | Msa0475390:intron | 35.0% | |
| !! | TGTTTTTGCTAGACTCTAAC+CGG | + | chr3_3:78571843-78571862 | Msa0475390:intron | 35.0% |
| ATATGAAGCTCTACATAACC+CGG | - | chr3_3:78571865-78571884 | None:intergenic | 35.0% | |
| TCAGTGGAACTAATCAAAAG+TGG | + | chr3_3:78572039-78572058 | Msa0475390:intron | 35.0% | |
| ! | TTTTGGATGGAATTCCGTAA+CGG | + | chr3_3:78572274-78572293 | Msa0475390:intron | 35.0% |
| TGAGAAAAAGCTAATCGCAA+AGG | + | chr3_3:78572377-78572396 | Msa0475390:intron | 35.0% | |
| TGAAATTGTAGGTGATTCCA+AGG | + | chr3_3:78573636-78573655 | Msa0475390:intron | 35.0% | |
| GAAATTGTAGGTGATTCCAA+GGG | + | chr3_3:78573637-78573656 | Msa0475390:intron | 35.0% | |
| ! | CAAGGGAAGCTAGAAATTTT+GGG | + | chr3_3:78573654-78573673 | Msa0475390:CDS | 35.0% |
| AAGCACTTACTATGTTGTGT+TGG | + | chr3_3:78573685-78573704 | Msa0475390:CDS | 35.0% | |
| ! | TGTCACTTGTACTTTCTCTT+TGG | + | chr3_3:78573870-78573889 | Msa0475390:CDS | 35.0% |
| GTCACTTGTACTTTCTCTTT+GGG | + | chr3_3:78573871-78573890 | Msa0475390:CDS | 35.0% | |
| TCACTTGTACTTTCTCTTTG+GGG | + | chr3_3:78573872-78573891 | Msa0475390:CDS | 35.0% | |
| !!! | GGTTTTGTGTCCTATTTCTA+TGG | + | chr3_3:78573893-78573912 | Msa0475390:CDS | 35.0% |
| TGGTGAGATTAAACATGCTA+AGG | + | chr3_3:78573913-78573932 | Msa0475390:CDS | 35.0% | |
| TATACCCTACATTCCAATCA+CGG | - | chr3_3:78574001-78574020 | None:intergenic | 35.0% | |
| GTTTAGAGAGAACACACACA+TGG | + | chr3_3:78570650-78570669 | Msa0475390:exon | 40.0% | |
| AATTGTCTCATGTTAGCCCT+AGG | + | chr3_3:78570729-78570748 | Msa0475390:CDS | 40.0% | |
| ATGCGTCTCTATTTCATCCA+CGG | + | chr3_3:78570774-78570793 | Msa0475390:CDS | 40.0% | |
| ATGATGTATGAGATTGCGAG+GGG | - | chr3_3:78570861-78570880 | None:intergenic | 40.0% | |
| GTATGATGTATGAGATTGCG+AGG | - | chr3_3:78570863-78570882 | None:intergenic | 40.0% | |
| !!! | TTTTTCTGTGGTGATGGAGA+TGG | - | chr3_3:78570922-78570941 | None:intergenic | 40.0% |
| ATTAAGGAACCAGTGGAAAC+TGG | - | chr3_3:78571050-78571069 | None:intergenic | 40.0% | |
| ACCAACCGTAAGCAAAACAA+TGG | - | chr3_3:78571153-78571172 | None:intergenic | 40.0% | |
| TGATTAGGTTTGGATCTTCC+AGG | + | chr3_3:78571803-78571822 | Msa0475390:intron | 40.0% | |
| ! | GTTTTTGCTAGACTCTAACC+GGG | + | chr3_3:78571844-78571863 | Msa0475390:intron | 40.0% |
| GGGCGGCTAAATCTATAAAA+AGG | + | chr3_3:78572159-78572178 | Msa0475390:intron | 40.0% | |
| CTATAAAAAGGAACTGGCAG+TGG | + | chr3_3:78572171-78572190 | Msa0475390:intron | 40.0% | |
| !!! | TATGCGGTTCGGTTTGATTT+TGG | + | chr3_3:78572257-78572276 | Msa0475390:intron | 40.0% |
| !! | GTTAGTATCGGTTTCTTGGT+GGG | - | chr3_3:78572943-78572962 | None:intergenic | 40.0% |
| ACTACCATTGCGGTTAGTAT+CGG | - | chr3_3:78572955-78572974 | None:intergenic | 40.0% | |
| !! | TCAACCCAAAAGTGCTGAAA+GGG | - | chr3_3:78573120-78573139 | None:intergenic | 40.0% |
| !! | TTCAACCCAAAAGTGCTGAA+AGG | - | chr3_3:78573121-78573140 | None:intergenic | 40.0% |
| !! | CCAAAATTTCTAGCTTCCCT+TGG | - | chr3_3:78573656-78573675 | None:intergenic | 40.0% |
| ! | CCAAGGGAAGCTAGAAATTT+TGG | + | chr3_3:78573653-78573672 | Msa0475390:CDS | 40.0% |
| ! | GAAGCTAGAAATTTTGGGCT+AGG | + | chr3_3:78573659-78573678 | Msa0475390:CDS | 40.0% |
| TGGTTGTTAGTGCGTTAATG+TGG | + | chr3_3:78573705-78573724 | Msa0475390:CDS | 40.0% | |
| ! | AATGTGGCAAGCGTTTTTCT+TGG | + | chr3_3:78573721-78573740 | Msa0475390:CDS | 40.0% |
| ! | ATGTGGCAAGCGTTTTTCTT+GGG | + | chr3_3:78573722-78573741 | Msa0475390:CDS | 40.0% |
| ! | GTTACCACTAACAGAAGTGT+TGG | + | chr3_3:78573805-78573824 | Msa0475390:CDS | 40.0% |
| AAGGCAGAAAAGAAGAAACG+TGG | + | chr3_3:78573932-78573951 | Msa0475390:CDS | 40.0% | |
| ATAGATGGGTCAAACTCTTG+AGG | + | chr3_3:78573964-78573983 | Msa0475390:exon | 40.0% | |
| TAGATGGGTCAAACTCTTGA+GGG | + | chr3_3:78573965-78573984 | Msa0475390:exon | 40.0% | |
| GAGAACACACACATGGAAGA+AGG | + | chr3_3:78570657-78570676 | Msa0475390:exon | 45.0% | |
| CACACACATGGAAGAAGGAA+AGG | + | chr3_3:78570662-78570681 | Msa0475390:exon | 45.0% | |
| AATGAGCATCAAGGGGAAAC+TGG | - | chr3_3:78570838-78570857 | None:intergenic | 45.0% | |
| ATGCGAAGAGATAGTCGTCA+AGG | - | chr3_3:78571010-78571029 | None:intergenic | 45.0% | |
| GACGACTATCTCTTCGCATA+TGG | + | chr3_3:78571011-78571030 | Msa0475390:CDS | 45.0% | |
| !! | GCCATTGTTTTGCTTACGGT+TGG | + | chr3_3:78571149-78571168 | Msa0475390:CDS | 45.0% |
| !! | GTTTTGCTTACGGTTGGTTC+TGG | + | chr3_3:78571155-78571174 | Msa0475390:CDS | 45.0% |
| !!! | TACGGTTGGTTCTGGTGTTT+TGG | + | chr3_3:78571163-78571182 | Msa0475390:CDS | 45.0% |
| ! | TGTTTTGCAGAAACACCAGC+AGG | - | chr3_3:78571212-78571231 | None:intergenic | 45.0% |
| ! | GTTGCTGCTTCTGCATTGTA+TGG | + | chr3_3:78571257-78571276 | Msa0475390:CDS | 45.0% |
| ! | TGTTTTGCCTTCGGTTGAGT+TGG | + | chr3_3:78571283-78571302 | Msa0475390:CDS | 45.0% |
| !! | TCAGAAGTGTCCATGCAACA+AGG | - | chr3_3:78571576-78571595 | None:intergenic | 45.0% |
| GCATGGACACTTCTGATTGA+AGG | + | chr3_3:78571580-78571599 | Msa0475390:intron | 45.0% | |
| TATAGATTTAGCCGCCCTTG+CGG | - | chr3_3:78572156-78572175 | None:intergenic | 45.0% | |
| !!! | CGGTTCGGTTTGATTTTGGA+TGG | + | chr3_3:78572261-78572280 | Msa0475390:intron | 45.0% |
| !! | GGTTAGTATCGGTTTCTTGG+TGG | - | chr3_3:78572944-78572963 | None:intergenic | 45.0% |
| !! | TGCGGTTAGTATCGGTTTCT+TGG | - | chr3_3:78572947-78572966 | None:intergenic | 45.0% |
| GAAACCGATACTAACCGCAA+TGG | + | chr3_3:78572948-78572967 | Msa0475390:intron | 45.0% | |
| ! | ACTACCCCTTTCAGCACTTT+TGG | + | chr3_3:78573112-78573131 | Msa0475390:intron | 45.0% |
| ! | CTACCCCTTTCAGCACTTTT+GGG | + | chr3_3:78573113-78573132 | Msa0475390:intron | 45.0% |
| !! | CAACCCAAAAGTGCTGAAAG+GGG | - | chr3_3:78573119-78573138 | None:intergenic | 45.0% |
| ! | TGTGGCAAGCGTTTTTCTTG+GGG | + | chr3_3:78573723-78573742 | Msa0475390:CDS | 45.0% |
| ! | CGTTTTTCTTGGGGGCTATT+GGG | + | chr3_3:78573732-78573751 | Msa0475390:CDS | 45.0% |
| ! | GTTTTTCTTGGGGGCTATTG+GGG | + | chr3_3:78573733-78573752 | Msa0475390:CDS | 45.0% |
| TTGTGCCTCATCGTTAGTGT+CGG | + | chr3_3:78573763-78573782 | Msa0475390:CDS | 45.0% | |
| AATACCCGACACTAACGATG+AGG | - | chr3_3:78573771-78573790 | None:intergenic | 45.0% | |
| ACTGCCAACACTTCTGTTAG+TGG | - | chr3_3:78573812-78573831 | None:intergenic | 45.0% | |
| AGATGGGTCAAACTCTTGAG+GGG | + | chr3_3:78573966-78573985 | Msa0475390:exon | 45.0% | |
| TGCTCCGTGATTGGAATGTA+GGG | + | chr3_3:78573994-78574013 | Msa0475390:three_prime_UTR | 45.0% | |
| !!! | TTTTTTAATGTAATTTTTTT+AGG | - | chr3_3:78572828-78572847 | None:intergenic | 5.0% |
| !!! | TAAATTTTTTTTTATATTGT+TGG | + | chr3_3:78573377-78573396 | Msa0475390:intron | 5.0% |
| ATGTTAGCCCTAGGTACCTC+CGG | + | chr3_3:78570738-78570757 | Msa0475390:CDS | 50.0% | |
| CGTCTCTATTTCATCCACGG+CGG | + | chr3_3:78570777-78570796 | Msa0475390:CDS | 50.0% | |
| !! | TTCTGTGGTGATGGAGATGG+TGG | - | chr3_3:78570919-78570938 | None:intergenic | 50.0% |
| GCGGCTGCGAAGAAAATAGA+AGG | - | chr3_3:78570966-78570985 | None:intergenic | 50.0% | |
| GAAGAGATAGTCGTCAAGGC+CGG | - | chr3_3:78571006-78571025 | None:intergenic | 50.0% | |
| TCTTCGCATATGGCGTTGCT+CGG | + | chr3_3:78571021-78571040 | Msa0475390:CDS | 50.0% | |
| GCCACTCTCTTCTGTGCTAT+AGG | + | chr3_3:78571377-78571396 | Msa0475390:CDS | 50.0% | |
| GCCTATAGCACAGAAGAGAG+TGG | - | chr3_3:78571381-78571400 | None:intergenic | 50.0% | |
| CGTCATGTTCGACACAACAC+CGG | + | chr3_3:78571624-78571643 | Msa0475390:intron | 50.0% | |
| AGAAACTTGTCCTACCCGCA+AGG | + | chr3_3:78572138-78572157 | Msa0475390:intron | 50.0% | |
| GAAACTTGTCCTACCCGCAA+GGG | + | chr3_3:78572139-78572158 | Msa0475390:intron | 50.0% | |
| ATAGATTTAGCCGCCCTTGC+GGG | - | chr3_3:78572155-78572174 | None:intergenic | 50.0% | |
| GGAACTGGCAGTGGTATTCA+CGG | + | chr3_3:78572180-78572199 | Msa0475390:intron | 50.0% | |
| ! | GTGGCAAGCGTTTTTCTTGG+GGG | + | chr3_3:78573724-78573743 | Msa0475390:CDS | 50.0% |
| ! | GCGTTTTTCTTGGGGGCTAT+TGG | + | chr3_3:78573731-78573750 | Msa0475390:CDS | 50.0% |
| TGTGCCTCATCGTTAGTGTC+GGG | + | chr3_3:78573764-78573783 | Msa0475390:CDS | 50.0% | |
| !!! | GTGACACCGCTTTTTCTGCT+TGG | - | chr3_3:78573856-78573875 | None:intergenic | 50.0% |
| GATGGGTCAAACTCTTGAGG+GGG | + | chr3_3:78573967-78573986 | Msa0475390:exon | 50.0% | |
| CTACATTCCAATCACGGAGC+AGG | - | chr3_3:78573995-78574014 | None:intergenic | 50.0% | |
| CTGCTCCGTGATTGGAATGT+AGG | + | chr3_3:78573993-78574012 | Msa0475390:three_prime_UTR | 50.0% | |
| ! | ACGCATTATGAGGGGAGCAC+CGG | - | chr3_3:78570760-78570779 | None:intergenic | 55.0% |
| ! | GAAACTGGCGGTTTGGAGGA+AGG | - | chr3_3:78570823-78570842 | None:intergenic | 55.0% |
| TCAAGGGGAAACTGGCGGTT+TGG | - | chr3_3:78570830-78570849 | None:intergenic | 55.0% | |
| GAGCATCAAGGGGAAACTGG+CGG | - | chr3_3:78570835-78570854 | None:intergenic | 55.0% | |
| CGAGGGGAATGAGCATCAAG+GGG | - | chr3_3:78570845-78570864 | None:intergenic | 55.0% | |
| GCGAGGGGAATGAGCATCAA+GGG | - | chr3_3:78570846-78570865 | None:intergenic | 55.0% | |
| TGCGAGGGGAATGAGCATCA+AGG | - | chr3_3:78570847-78570866 | None:intergenic | 55.0% | |
| !! | ATGGAGATGGTGGTGGATGG+TGG | - | chr3_3:78570909-78570928 | None:intergenic | 55.0% |
| !! | GTGATGGAGATGGTGGTGGA+TGG | - | chr3_3:78570912-78570931 | None:intergenic | 55.0% |
| !! | TGTGGTGATGGAGATGGTGG+TGG | - | chr3_3:78570916-78570935 | None:intergenic | 55.0% |
| TTCTTCGCAGCCGCCTTCAT+CGG | + | chr3_3:78570972-78570991 | Msa0475390:CDS | 55.0% | |
| GGTGAGGATTCCGATGAAGG+CGG | - | chr3_3:78570985-78571004 | None:intergenic | 55.0% | |
| GCCTTCATCGGAATCCTCAC+CGG | + | chr3_3:78570984-78571003 | Msa0475390:CDS | 55.0% | |
| ACGAGTAGTGATCGTCCTGC+TGG | + | chr3_3:78571194-78571213 | Msa0475390:CDS | 55.0% | |
| CAATGCAGAAGCAGCAACCG+TGG | - | chr3_3:78571255-78571274 | None:intergenic | 55.0% | |
| TGGCAGTGGTATTCACGGTC+TGG | + | chr3_3:78572185-78572204 | Msa0475390:intron | 55.0% | |
| !! | CATTATGAGGGGAGCACCGG+AGG | - | chr3_3:78570757-78570776 | None:intergenic | 60.0% |
| ! | ACTGGCGGTTTGGAGGAAGG+CGG | - | chr3_3:78570820-78570839 | None:intergenic | 60.0% |
| ! | AGGGGAAACTGGCGGTTTGG+AGG | - | chr3_3:78570827-78570846 | None:intergenic | 60.0% |
| !! | GTGGAGGATGGTGGTGGAGA+CGG | - | chr3_3:78570890-78570909 | None:intergenic | 60.0% |
| !! | TGGATGGTGGAGGATGGTGG+TGG | - | chr3_3:78570896-78570915 | None:intergenic | 60.0% |
| !! | TGGTGGATGGTGGAGGATGG+TGG | - | chr3_3:78570899-78570918 | None:intergenic | 60.0% |
| !! | TGGTGGTGGATGGTGGAGGA+TGG | - | chr3_3:78570902-78570921 | None:intergenic | 60.0% |
| !! | GAGATGGTGGTGGATGGTGG+AGG | - | chr3_3:78570906-78570925 | None:intergenic | 60.0% |
| GCCGGTGAGGATTCCGATGA+AGG | - | chr3_3:78570988-78571007 | None:intergenic | 60.0% | |
| GATAGTCGTCAAGGCCGGTG+AGG | - | chr3_3:78571001-78571020 | None:intergenic | 60.0% | |
| GCTCGGCTTCCAGTTTCCAC+TGG | + | chr3_3:78571038-78571057 | Msa0475390:CDS | 60.0% | |
| ACTTGTCCTACCCGCAAGGG+CGG | + | chr3_3:78572142-78572161 | Msa0475390:intron | 60.0% | |
| ATTTAGCCGCCCTTGCGGGT+AGG | - | chr3_3:78572151-78572170 | None:intergenic | 60.0% | |
| !! | GGGAGCACCGGAGGTACCTA+GGG | - | chr3_3:78570748-78570767 | None:intergenic | 65.0% |
| AGGCGGAGAGCCAGACACGT+TGG | - | chr3_3:78570803-78570822 | None:intergenic | 65.0% | |
| !! | GGGGGTACCTGCTCCGTGAT+TGG | + | chr3_3:78573985-78574004 | Msa0475390:three_prime_UTR | 65.0% |
| !! | GGGGAGCACCGGAGGTACCT+AGG | - | chr3_3:78570749-78570768 | None:intergenic | 70.0% |
| TCCACGGCGGCCAACGTGTC+TGG | + | chr3_3:78570790-78570809 | Msa0475390:CDS | 70.0% | |
| GCCAGACACGTTGGCCGCCG+TGG | - | chr3_3:78570794-78570813 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78570547 | 78574219 | 78570547 | ID=Msa0475390;Name=Msa0475390 |
| chr3_3 | mRNA | 78570547 | 78574219 | 78570547 | ID=Msa0475390-mRNA-1;Parent=Msa0475390;Name=Msa0475390-mRNA-1;_AED=0.28;_eAED=0.28;_QI=122|1|1|1|1|1|2|252|358 |
| chr3_3 | exon | 78570547 | 78571424 | 78570547 | ID=Msa0475390-mRNA-1:exon:21165;Parent=Msa0475390-mRNA-1 |
| chr3_3 | exon | 78573647 | 78574219 | 78573647 | ID=Msa0475390-mRNA-1:exon:21166;Parent=Msa0475390-mRNA-1 |
| chr3_3 | five_prime_UTR | 78570547 | 78570668 | 78570547 | ID=Msa0475390-mRNA-1:five_prime_utr;Parent=Msa0475390-mRNA-1 |
| chr3_3 | CDS | 78570669 | 78571424 | 78570669 | ID=Msa0475390-mRNA-1:cds;Parent=Msa0475390-mRNA-1 |
| chr3_3 | CDS | 78573647 | 78573967 | 78573647 | ID=Msa0475390-mRNA-1:cds;Parent=Msa0475390-mRNA-1 |
| chr3_3 | three_prime_UTR | 78573968 | 78574219 | 78573968 | ID=Msa0475390-mRNA-1:three_prime_utr;Parent=Msa0475390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
