Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0382670 | XP_003600862.1 | 98.264 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 0.0 | 583 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0382670 | sp|O04202|EIF3F_ARATH | 75.945 | 291 | 66 | 1 | 2 | 288 | 3 | 293 | 2.00e-159 | 448 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0382670 | B7FK44 | 98.264 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 0.0 | 583 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001760 | Msa0382670 | 0.823896 | 1.081811e-53 | -8.615850e-47 |
Msa0003330 | Msa0382670 | 0.877275 | 7.162366e-69 | -8.615850e-47 |
Msa0020870 | Msa0382670 | 0.811984 | 5.324390e-51 | -8.615850e-47 |
Msa0027590 | Msa0382670 | 0.861426 | 1.034806e-63 | -8.615850e-47 |
Msa0037230 | Msa0382670 | 0.823385 | 1.425106e-53 | -8.615850e-47 |
Msa0042510 | Msa0382670 | 0.841996 | 3.385348e-58 | -8.615850e-47 |
Msa0071640 | Msa0382670 | 0.800071 | 1.711404e-48 | -8.615850e-47 |
Msa0075350 | Msa0382670 | 0.818404 | 1.995280e-52 | -8.615850e-47 |
Msa0079560 | Msa0382670 | 0.825297 | 5.061989e-54 | -8.615850e-47 |
Msa0094210 | Msa0382670 | 0.832364 | 9.861769e-56 | -8.615850e-47 |
Msa0127230 | Msa0382670 | 0.814030 | 1.896018e-51 | -8.615850e-47 |
Msa0132460 | Msa0382670 | 0.824104 | 9.669312e-54 | -8.615850e-47 |
Msa0148000 | Msa0382670 | -0.813065 | 3.090589e-51 | -8.615850e-47 |
Msa0159870 | Msa0382670 | 0.810609 | 1.058585e-50 | -8.615850e-47 |
Msa0167860 | Msa0382670 | 0.836049 | 1.175023e-56 | -8.615850e-47 |
Msa0168320 | Msa0382670 | 0.888552 | 5.336395e-73 | -8.615850e-47 |
Msa0177940 | Msa0382670 | 0.854092 | 1.549415e-61 | -8.615850e-47 |
Msa0182050 | Msa0382670 | 0.828811 | 7.305684e-55 | -8.615850e-47 |
Msa0182100 | Msa0382670 | 0.847501 | 1.111096e-59 | -8.615850e-47 |
Msa0188740 | Msa0382670 | 0.851306 | 9.671154e-61 | -8.615850e-47 |
Msa0191450 | Msa0382670 | 0.809769 | 1.606300e-50 | -8.615850e-47 |
Msa0192300 | Msa0382670 | 0.844102 | 9.306753e-59 | -8.615850e-47 |
Msa0195030 | Msa0382670 | 0.862932 | 3.569421e-64 | -8.615850e-47 |
Msa0225370 | Msa0382670 | -0.801791 | 7.622291e-49 | -8.615850e-47 |
Msa0233550 | Msa0382670 | 0.865257 | 6.732824e-65 | -8.615850e-47 |
Msa0237180 | Msa0382670 | 0.844354 | 7.964521e-59 | -8.615850e-47 |
Msa0371490 | Msa0382670 | 0.887450 | 1.412086e-72 | -8.615850e-47 |
Msa0376850 | Msa0382670 | 0.817167 | 3.794411e-52 | -8.615850e-47 |
Msa0377520 | Msa0382670 | 0.843365 | 1.465394e-58 | -8.615850e-47 |
Msa0378620 | Msa0382670 | -0.838119 | 3.473910e-57 | -8.615850e-47 |
Msa0382670 | Msa0387290 | 0.861757 | 8.197409e-64 | -8.615850e-47 |
Msa0382670 | Msa0388520 | 0.822220 | 2.661440e-53 | -8.615850e-47 |
Msa0382670 | Msa0389800 | 0.824604 | 7.376038e-54 | -8.615850e-47 |
Msa0382670 | Msa0404210 | -0.824733 | 6.879217e-54 | -8.615850e-47 |
Msa0382670 | Msa0416470 | 0.932269 | 1.097226e-94 | -8.615850e-47 |
Msa0382670 | Msa0426090 | 0.825085 | 5.679892e-54 | -8.615850e-47 |
Msa0382670 | Msa0428530 | -0.816127 | 6.489824e-52 | -8.615850e-47 |
Msa0382670 | Msa0432260 | -0.819956 | 8.846579e-53 | -8.615850e-47 |
Msa0382670 | Msa0436830 | -0.824564 | 7.539001e-54 | -8.615850e-47 |
Msa0382670 | Msa0460680 | -0.803182 | 3.938306e-49 | -8.615850e-47 |
Msa0382670 | Msa0468140 | 0.831923 | 1.267545e-55 | -8.615850e-47 |
Msa0382670 | Msa0472480 | 0.836368 | 9.751776e-57 | -8.615850e-47 |
Msa0382670 | Msa0475390 | -0.827369 | 1.624837e-54 | -8.615850e-47 |
Msa0382670 | Msa0476730 | -0.819003 | 1.458582e-52 | -8.615850e-47 |
Msa0382670 | Msa0485220 | 0.817745 | 2.811475e-52 | -8.615850e-47 |
Msa0382670 | Msa0511760 | 0.871158 | 8.459538e-67 | -8.615850e-47 |
Msa0382670 | Msa0516830 | 0.818231 | 2.183105e-52 | -8.615850e-47 |
Msa0382670 | Msa0517480 | 0.835335 | 1.781817e-56 | -8.615850e-47 |
Msa0382670 | Msa0547920 | 0.822942 | 1.808468e-53 | -8.615850e-47 |
Msa0382670 | Msa0573550 | 0.844378 | 7.847436e-59 | -8.615850e-47 |
Msa0382670 | Msa0574780 | 0.867692 | 1.135069e-65 | -8.615850e-47 |
Msa0382670 | Msa0578010 | 0.803439 | 3.484196e-49 | -8.615850e-47 |
Msa0382670 | Msa0582070 | 0.803542 | 3.316601e-49 | -8.615850e-47 |
Msa0382670 | Msa0597240 | 0.849210 | 3.742049e-60 | -8.615850e-47 |
Msa0382670 | Msa0602900 | 0.817704 | 2.872839e-52 | -8.615850e-47 |
Msa0382670 | Msa0609120 | 0.822981 | 1.770967e-53 | -8.615850e-47 |
Msa0382670 | Msa0619230 | 0.878273 | 3.207745e-69 | -8.615850e-47 |
Msa0382670 | Msa0621190 | 0.901352 | 2.923352e-78 | -8.615850e-47 |
Msa0382670 | Msa0643960 | 0.817065 | 4.000136e-52 | -8.615850e-47 |
Msa0382670 | Msa0646180 | -0.818691 | 1.717890e-52 | -8.615850e-47 |
Msa0382670 | Msa0656450 | 0.833631 | 4.773728e-56 | -8.615850e-47 |
Msa0382670 | Msa0691760 | 0.880447 | 5.447198e-70 | -8.615850e-47 |
Msa0382670 | Msa0694400 | 0.810434 | 1.154891e-50 | -8.615850e-47 |
Msa0382670 | Msa0700370 | 0.847859 | 8.857595e-60 | -8.615850e-47 |
Msa0382670 | Msa0708630 | 0.824254 | 8.916462e-54 | -8.615850e-47 |
Msa0382670 | Msa0724530 | 0.820677 | 6.044056e-53 | -8.615850e-47 |
Msa0382670 | Msa0758420 | 0.831888 | 1.293214e-55 | -8.615850e-47 |
Msa0382670 | Msa0790450 | 0.835976 | 1.226260e-56 | -8.615850e-47 |
Msa0382670 | Msa0834220 | 0.846322 | 2.335566e-59 | -8.615850e-47 |
Msa0382670 | Msa0880050 | 0.867830 | 1.024619e-65 | -8.615850e-47 |
Msa0382670 | Msa0881240 | 0.807837 | 4.158479e-50 | -8.615850e-47 |
Msa0382670 | Msa0929680 | 0.837024 | 6.633478e-57 | -8.615850e-47 |
Msa0382670 | Msa0929700 | 0.866732 | 2.299502e-65 | -8.615850e-47 |
Msa0382670 | Msa0929790 | 0.813716 | 2.223086e-51 | -8.615850e-47 |
Msa0382670 | Msa0930360 | 0.867858 | 1.003840e-65 | -8.615850e-47 |
Msa0382670 | Msa0930790 | 0.836121 | 1.126733e-56 | -8.615850e-47 |
Msa0382670 | Msa0982260 | 0.825209 | 5.310930e-54 | -8.615850e-47 |
Msa0382670 | Msa1037030 | 0.801288 | 9.664237e-49 | -8.615850e-47 |
Msa0382670 | Msa1041830 | 0.828758 | 7.524154e-55 | -8.615850e-47 |
Msa0382670 | Msa1055710 | -0.805388 | 1.367353e-49 | -8.615850e-47 |
Msa0382670 | Msa1082050 | 0.849951 | 2.325340e-60 | -8.615850e-47 |
Msa0382670 | Msa1082170 | 0.803940 | 2.742015e-49 | -8.615850e-47 |
Msa0382670 | Msa1124980 | 0.875999 | 1.978295e-68 | -8.615850e-47 |
Msa0382670 | Msa1126690 | 0.801196 | 1.009213e-48 | -8.615850e-47 |
Msa0382670 | Msa1144630 | 0.806767 | 7.011781e-50 | -8.615850e-47 |
Msa0382670 | Msa1152860 | 0.844041 | 9.660811e-59 | -8.615850e-47 |
Msa0382670 | Msa1156830 | 0.826668 | 2.390278e-54 | -8.615850e-47 |
Msa0382670 | Msa1167360 | 0.869593 | 2.755982e-66 | -8.615850e-47 |
Msa0382670 | Msa1186030 | 0.810450 | 1.145528e-50 | -8.615850e-47 |
Msa0382670 | Msa1225040 | 0.812313 | 4.514108e-51 | -8.615850e-47 |
Msa0382670 | Msa1235950 | 0.869635 | 2.671368e-66 | -8.615850e-47 |
Msa0382670 | Msa1235980 | 0.879784 | 9.394328e-70 | -8.615850e-47 |
Msa0382670 | Msa1237040 | 0.854714 | 1.024225e-61 | -8.615850e-47 |
Msa0382670 | Msa1261970 | 0.803530 | 3.336605e-49 | -8.615850e-47 |
Msa0382670 | Msa1284800 | 0.841319 | 5.108680e-58 | -8.615850e-47 |
Msa0382670 | Msa1307730 | 0.828297 | 9.722705e-55 | -8.615850e-47 |
Msa0382670 | Msa1316100 | 0.862157 | 6.179919e-64 | -8.615850e-47 |
Msa0382670 | Msa1317390 | 0.885474 | 7.883822e-72 | -8.615850e-47 |
Msa0382670 | Msa1329930 | 0.839632 | 1.410778e-57 | -8.615850e-47 |
Msa0382670 | Msa1330530 | -0.800565 | 1.357816e-48 | -8.615850e-47 |
Msa0382670 | Msa1351020 | 0.833247 | 5.952081e-56 | -8.615850e-47 |
Msa0382670 | Msa1359880 | -0.815217 | 1.035107e-51 | -8.615850e-47 |
Msa0382670 | Msa1363910 | 0.828391 | 9.225730e-55 | -8.615850e-47 |
Msa0382670 | Msa1363930 | 0.807197 | 5.684705e-50 | -8.615850e-47 |
Msa0382670 | Msa1387750 | 0.883145 | 5.747020e-71 | -8.615850e-47 |
Msa0382670 | Msa1390760 | 0.879029 | 1.738610e-69 | -8.615850e-47 |
Msa0382670 | Msa1407550 | 0.860548 | 1.913145e-63 | -8.615850e-47 |
Msa0382670 | Msa1413570 | 0.833884 | 4.126507e-56 | -8.615850e-47 |
Msa0382670 | Msa1423050 | 0.866923 | 1.998312e-65 | -8.615850e-47 |
Msa0382670 | Msa1432310 | 0.820749 | 5.818751e-53 | -8.615850e-47 |
Msa0382670 | Msa1446510 | 0.806963 | 6.372255e-50 | -8.615850e-47 |
Msa0382670 | Msa1450560 | 0.842295 | 2.822360e-58 | -8.615850e-47 |
Msa0382670 | Msa1453380 | 0.839005 | 2.052246e-57 | -8.615850e-47 |
Msa0382670 | Msa1453530 | 0.815670 | 8.209355e-52 | -8.615850e-47 |
Msa0382670 | Msa1463510 | 0.822026 | 2.951799e-53 | -8.615850e-47 |
Msa0382670 | Msa1465700 | 0.900645 | 5.952722e-78 | -8.615850e-47 |
Msa0382670 | Msa1465890 | 0.825724 | 4.010372e-54 | -8.615850e-47 |
Msa0239420 | Msa0382670 | 0.891052 | 5.646672e-74 | -8.615850e-47 |
Msa0266380 | Msa0382670 | -0.812658 | 3.795798e-51 | -8.615850e-47 |
Msa0270160 | Msa0382670 | 0.810415 | 1.165787e-50 | -8.615850e-47 |
Msa0274940 | Msa0382670 | 0.863135 | 3.089941e-64 | -8.615850e-47 |
Msa0281370 | Msa0382670 | 0.821061 | 4.931282e-53 | -8.615850e-47 |
Msa0301250 | Msa0382670 | 0.854588 | 1.113707e-61 | -8.615850e-47 |
Msa0313060 | Msa0382670 | 0.832130 | 1.127002e-55 | -8.615850e-47 |
Msa0315660 | Msa0382670 | 0.850452 | 1.682657e-60 | -8.615850e-47 |
Msa0341520 | Msa0382670 | -0.819632 | 1.048915e-52 | -8.615850e-47 |
Msa0341860 | Msa0382670 | -0.811693 | 6.161931e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0382670 | MtrunA17_Chr3g0113201 | 98.264 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 0.0 | 583 |
Msa0382670 | MtrunA17_Chr5g0436671 | 88.542 | 288 | 29 | 1 | 1 | 288 | 1 | 284 | 0.0 | 520 |
Msa0382670 | MtrunA17_Chr3g0113191 | 33.096 | 281 | 170 | 7 | 17 | 283 | 10 | 286 | 1.00e-34 | 127 |
Msa0382670 | MtrunA17_Chr5g0436641 | 32.841 | 271 | 165 | 6 | 25 | 282 | 19 | 285 | 1.64e-34 | 127 |
Msa0382670 | MtrunA17_Chr5g0436681 | 75.000 | 40 | 10 | 0 | 182 | 221 | 16 | 55 | 5.81e-13 | 62.8 |
Msa0382670 | MtrunA17_Chr3g0079641 | 23.948 | 309 | 191 | 7 | 14 | 284 | 2 | 304 | 5.66e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0382670 | AT2G39990.1 | 75.945 | 291 | 66 | 1 | 2 | 288 | 3 | 293 | 2.03e-160 | 448 |
Msa0382670 | AT3G11270.2 | 32.979 | 282 | 169 | 7 | 17 | 282 | 5 | 282 | 1.82e-36 | 132 |
Msa0382670 | AT3G11270.1 | 32.632 | 285 | 169 | 7 | 17 | 282 | 5 | 285 | 4.80e-36 | 131 |
Msa0382670 | AT5G05780.2 | 31.560 | 282 | 173 | 7 | 17 | 282 | 5 | 282 | 1.33e-33 | 125 |
Msa0382670 | AT5G05780.1 | 31.228 | 285 | 173 | 7 | 17 | 282 | 5 | 285 | 3.38e-33 | 124 |
Msa0382670 | AT4G26430.1 | 24.342 | 304 | 191 | 7 | 16 | 284 | 4 | 303 | 2.23e-13 | 69.7 |
Msa0382670 | AT5G56280.1 | 24.752 | 303 | 191 | 7 | 16 | 284 | 4 | 303 | 1.47e-12 | 67.4 |
Find 73 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCTGATACTACAAGTTTC+TGG | 0.171214 | 3_1:-85414207 | None:intergenic |
CGCGTCATTGGAACGCTTCT+TGG | 0.210700 | 3_1:+85409196 | Msa0382670:CDS |
GTTGCACCAGACAACAAAAT+TGG | 0.229921 | 3_1:+85413781 | Msa0382670:CDS |
ACAGTCAGAATTACAAAATC+TGG | 0.275877 | 3_1:-85414137 | None:intergenic |
TGTCAACAGTGGTTGCCTTT+AGG | 0.305583 | 3_1:-85413586 | None:intergenic |
GTTTGACACATAAGCTTTGA+TGG | 0.319915 | 3_1:-85412844 | None:intergenic |
TTTCTTCTATATCTCGTATA+AGG | 0.321676 | 3_1:+85414294 | Msa0382670:three_prime_UTR |
CTTGGATCTGTTCTTCCTGA+TGG | 0.343100 | 3_1:+85409214 | Msa0382670:CDS |
GCTTGTGAACGACAGCTTAC+AGG | 0.343421 | 3_1:+85413864 | Msa0382670:CDS |
TCAACTGGACTTGGAGTAAC+TGG | 0.372693 | 3_1:+85412729 | Msa0382670:CDS |
GTGTCAAACAATTTATCTCT+TGG | 0.383210 | 3_1:+85412858 | Msa0382670:CDS |
TATTTATGCAGGTATTCAAC+TGG | 0.393038 | 3_1:+85412714 | Msa0382670:intron |
ATTCATTTGACTGTTGATAC+AGG | 0.396286 | 3_1:+85412801 | Msa0382670:CDS |
GATCAAGCTGAACGCGTCAT+TGG | 0.409335 | 3_1:+85409184 | Msa0382670:CDS |
AACAGTCAAATGAATGGGAT+TGG | 0.410536 | 3_1:-85412793 | None:intergenic |
TGCAGGTATTCAACTGGACT+TGG | 0.422441 | 3_1:+85412720 | Msa0382670:intron |
AAAATCCCCTCTGACTTAGA+AGG | 0.446924 | 3_1:+85413608 | Msa0382670:CDS |
AGAAGGCATGGAAGCATCAA+TGG | 0.461890 | 3_1:+85413625 | Msa0382670:CDS |
AATCAAAAGGAAGTCATAGT+TGG | 0.465079 | 3_1:+85412236 | Msa0382670:CDS |
TGTATCAACAGTCAAATGAA+TGG | 0.465420 | 3_1:-85412799 | None:intergenic |
TCCAACCTCCTCTGCGAACA+TGG | 0.475173 | 3_1:+85409042 | Msa0382670:exon |
TTGCACCAGACAACAAAATT+GGG | 0.482472 | 3_1:+85413782 | Msa0382670:CDS |
ATGGTTGAAGCTGAGCGAAT+TGG | 0.484794 | 3_1:+85412930 | Msa0382670:CDS |
TCACAATGAATCCATTGATC+AGG | 0.486833 | 3_1:+85409270 | Msa0382670:CDS |
GAGGAACAGCATATGAATTA+CGG | 0.486958 | 3_1:-85409249 | None:intergenic |
ACAATTTATCTCTTGGAGAC+AGG | 0.488454 | 3_1:+85412865 | Msa0382670:CDS |
ACAGTCAAATGAATGGGATT+GGG | 0.491042 | 3_1:-85412792 | None:intergenic |
CGAGGGAAGGACCTGATCAA+TGG | 0.491179 | 3_1:-85409281 | None:intergenic |
TTCTCAGAGCTTATCCGCTA+AGG | 0.495822 | 3_1:+85409111 | Msa0382670:CDS |
GTATCAACAGTCAAATGAAT+GGG | 0.496605 | 3_1:-85412798 | None:intergenic |
CGGATATCAACAGTTCCATC+AGG | 0.497957 | 3_1:-85409229 | None:intergenic |
CCCCTCTGACTTAGAAGGCA+TGG | 0.501688 | 3_1:+85413613 | Msa0382670:CDS |
GTTGATACAGGATTCACAAC+TGG | 0.502330 | 3_1:+85412813 | Msa0382670:CDS |
AAATATGACAAGGAAACCTC+CGG | 0.502350 | 3_1:-85414183 | None:intergenic |
ATGACGCGTTCAGCTTGATC+AGG | 0.505348 | 3_1:-85409181 | None:intergenic |
CACAAGAACTCAACTTAGCT+TGG | 0.506158 | 3_1:+85414092 | Msa0382670:CDS |
ACAAGCTTATCAAAATCAGA+TGG | 0.513873 | 3_1:-85413847 | None:intergenic |
CAAGCTTATCAAAATCAGAT+GGG | 0.536179 | 3_1:-85413846 | None:intergenic |
AATTCCACTGGATCTTCGTA+TGG | 0.540296 | 3_1:+85412911 | Msa0382670:CDS |
CTTCTCGAGAATAAAACTCA+TGG | 0.540683 | 3_1:-85412767 | None:intergenic |
CAGTCAGAATTACAAAATCT+GGG | 0.544157 | 3_1:-85414136 | None:intergenic |
ACACGTCTTGTGAGCAGCGA+AGG | 0.545362 | 3_1:+85409012 | Msa0382670:five_prime_UTR |
GTTTCAGGATCACTTGCTCA+TGG | 0.545819 | 3_1:+85414053 | Msa0382670:intron |
TGACGCCATGTTCGCAGAGG+AGG | 0.548240 | 3_1:-85409047 | None:intergenic |
AATGTCAGTTGATATCCTAA+AGG | 0.558985 | 3_1:+85413571 | Msa0382670:intron |
GGGACAACAACATATTATGA+TGG | 0.564682 | 3_1:-85412202 | None:intergenic |
AATATGACAAGGAAACCTCC+GGG | 0.570671 | 3_1:-85414182 | None:intergenic |
GCCATGTTCGCAGAGGAGGT+TGG | 0.571219 | 3_1:-85409043 | None:intergenic |
GAATTGCAACACTGTGCGAT+TGG | 0.579767 | 3_1:-85409071 | None:intergenic |
TCCATGCCTTCTAAGTCAGA+GGG | 0.582710 | 3_1:-85413614 | None:intergenic |
TTCTGACTGTCTCTGAGCGA+AGG | 0.593642 | 3_1:+85414150 | Msa0382670:three_prime_UTR |
CAAATATGTTGATGATGTTG+TGG | 0.594015 | 3_1:+85413679 | Msa0382670:CDS |
TGCGCATGGCAACGCATAGG+TGG | 0.594293 | 3_1:+85414270 | Msa0382670:three_prime_UTR |
AAAAGGAAGTCATAGTTGGA+TGG | 0.597430 | 3_1:+85412240 | Msa0382670:CDS |
AGCGGATAAGCTCTGAGAAG+AGG | 0.597938 | 3_1:-85409107 | None:intergenic |
TTCCATGCCTTCTAAGTCAG+AGG | 0.599344 | 3_1:-85413615 | None:intergenic |
GACGAGAGGATGAACCTTAG+CGG | 0.606488 | 3_1:-85409125 | None:intergenic |
ACAGGATTCACAACTGGAGG+GGG | 0.607665 | 3_1:+85412819 | Msa0382670:CDS |
AAATTTATATCAGATGCAGT+AGG | 0.618068 | 3_1:+85413805 | Msa0382670:CDS |
GATACAGGATTCACAACTGG+AGG | 0.619089 | 3_1:+85412816 | Msa0382670:CDS |
ACTGGACTTGGAGTAACTGG+TGG | 0.625290 | 3_1:+85412732 | Msa0382670:CDS |
TACAGGATTCACAACTGGAG+GGG | 0.630808 | 3_1:+85412818 | Msa0382670:CDS |
ACAGTTTCAAGAAATTCCAC+TGG | 0.631890 | 3_1:+85412899 | Msa0382670:CDS |
AAGCTTATCAAAATCAGATG+GGG | 0.633795 | 3_1:-85413845 | None:intergenic |
TGATCAATGGATTCATTGTG+AGG | 0.635583 | 3_1:-85409268 | None:intergenic |
ATACAGGATTCACAACTGGA+GGG | 0.659687 | 3_1:+85412817 | Msa0382670:CDS |
AGCTTATCAAAATCAGATGG+GGG | 0.668310 | 3_1:-85413844 | None:intergenic |
CAGATGTTGAATACGACGAG+AGG | 0.671951 | 3_1:-85409139 | None:intergenic |
GGTTGACGCCATGTTCGCAG+AGG | 0.681472 | 3_1:-85409050 | None:intergenic |
CCATGCCTTCTAAGTCAGAG+GGG | 0.694607 | 3_1:-85413613 | None:intergenic |
TCAACCATACGAAGATCCAG+TGG | 0.695781 | 3_1:-85412915 | None:intergenic |
AGTTTCTGGAAAATATGACA+AGG | 0.735731 | 3_1:-85414193 | None:intergenic |
ATATGACAAGGAAACCTCCG+GGG | 0.760518 | 3_1:-85414181 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTATTGATAAAAAAAAAT+AGG | + | chr3_1:85410590-85410609 | Msa0382670:intron | 10.0% |
!!! | TTTTAAATGAAAGAAAAAAA+TGG | - | chr3_1:85411453-85411472 | None:intergenic | 10.0% |
!! | TTTGTGAAAATATTAAATTA+AGG | + | chr3_1:85413494-85413513 | Msa0382670:intron | 10.0% |
!! | AATCATTAAAAATCAATATT+TGG | - | chr3_1:85413525-85413544 | None:intergenic | 10.0% |
!! | TAATAGATTTATTTATGTCT+TGG | + | chr3_1:85410519-85410538 | Msa0382670:intron | 15.0% |
!!! | TTTGCTTATTGTTTTTAAAA+CGG | + | chr3_1:85411519-85411538 | Msa0382670:intron | 15.0% |
!! | TGGTTAATATTAATATGAAA+TGG | + | chr3_1:85412514-85412533 | Msa0382670:intron | 15.0% |
!! | AAAATACAACAAAAAAACAA+AGG | - | chr3_1:85414251-85414270 | None:intergenic | 15.0% |
!! | AATATGTAATAGTAGAAAAA+AGG | - | chr3_1:85414376-85414395 | None:intergenic | 15.0% |
!! | ATCACATATTAAAATGTAGA+TGG | - | chr3_1:85409310-85409329 | None:intergenic | 20.0% |
!!! | ATAATTGTGAACTTTTTGTT+TGG | + | chr3_1:85409403-85409422 | Msa0382670:intron | 20.0% |
!! | GTTGTATTTATAGATATGAT+AGG | + | chr3_1:85409445-85409464 | Msa0382670:intron | 20.0% |
!! | TATTTATAGATATGATAGGA+GGG | + | chr3_1:85409449-85409468 | Msa0382670:intron | 20.0% |
!!! | TAGTTGAAATTTTAACAGAA+TGG | - | chr3_1:85409585-85409604 | None:intergenic | 20.0% |
!! | TAAGTATTTACTTACAAACT+CGG | - | chr3_1:85410198-85410217 | None:intergenic | 20.0% |
!!! | ATTGAATTTTTGTCTAGATA+AGG | + | chr3_1:85410324-85410343 | Msa0382670:intron | 20.0% |
!!! | TTGAATTTTTGTCTAGATAA+GGG | + | chr3_1:85410325-85410344 | Msa0382670:intron | 20.0% |
!! | GAAGGAAAAAAAATTATTAC+AGG | - | chr3_1:85410443-85410462 | None:intergenic | 20.0% |
!! | TATAAGAGAAACTATTAAGA+AGG | + | chr3_1:85410910-85410929 | Msa0382670:intron | 20.0% |
!!! | TGTTGTTTTTGTTGTAATTA+TGG | + | chr3_1:85411035-85411054 | Msa0382670:intron | 20.0% |
!!! | TCAAACTCAGAATTTTTTTT+TGG | - | chr3_1:85411330-85411349 | None:intergenic | 20.0% |
!! | AAAGTAAATACTTATCTCAT+CGG | + | chr3_1:85411412-85411431 | Msa0382670:intron | 20.0% |
!!! | TTGCTTATTGTTTTTAAAAC+GGG | + | chr3_1:85411520-85411539 | Msa0382670:intron | 20.0% |
!!! | ATTGAATTTTTGTCTAGATA+AGG | + | chr3_1:85410324-85410343 | Msa0382670:intron | 20.0% |
!!! | TTGAATTTTTGTCTAGATAA+GGG | + | chr3_1:85410325-85410344 | Msa0382670:intron | 20.0% |
!! | GTTTATTGATATCTAATTAG+AGG | + | chr3_1:85411842-85411861 | Msa0382670:intron | 20.0% |
!!! | TTTAGCTGTAACTTTTTTTA+TGG | + | chr3_1:85412443-85412462 | Msa0382670:intron | 20.0% |
!!! | TTAGCTGTAACTTTTTTTAT+GGG | + | chr3_1:85412444-85412463 | Msa0382670:intron | 20.0% |
!!! | CATTTGTTTTATATACCAAT+GGG | - | chr3_1:85412474-85412493 | None:intergenic | 20.0% |
!! | TGGTTAATATTAATACGAAA+TGG | + | chr3_1:85412556-85412575 | Msa0382670:intron | 20.0% |
!!! | GGTTGATATTAATATACAAA+TGG | + | chr3_1:85412599-85412618 | Msa0382670:intron | 20.0% |
!! | ATATTAATATACAAATGGAC+TGG | + | chr3_1:85412604-85412623 | Msa0382670:intron | 20.0% |
!! | AATAATCAAAGTTTACACAA+GGG | - | chr3_1:85412698-85412717 | None:intergenic | 20.0% |
!! | AAATAATCAAAGTTTACACA+AGG | - | chr3_1:85412699-85412718 | None:intergenic | 20.0% |
!! | TAAACTTTGATTATTTATGC+AGG | + | chr3_1:85412703-85412722 | Msa0382670:intron | 20.0% |
!!! | AAAAGCTAAGACTTTAAAAT+AGG | - | chr3_1:85413103-85413122 | None:intergenic | 20.0% |
!!! | CTTAGCTTTTAATTATGTAA+TGG | + | chr3_1:85413113-85413132 | Msa0382670:intron | 20.0% |
! | ACATATTAAAATGTAGATGG+AGG | - | chr3_1:85409307-85409326 | None:intergenic | 25.0% |
! | ATACAACAATATCCTTACTT+TGG | - | chr3_1:85409432-85409451 | None:intergenic | 25.0% |
! | GTATTTATAGATATGATAGG+AGG | + | chr3_1:85409448-85409467 | Msa0382670:intron | 25.0% |
!! | TTTTCTCTTATAGCTTATCT+AGG | - | chr3_1:85409758-85409777 | None:intergenic | 25.0% |
! | AAGAGAAAATATGAATGAGT+TGG | + | chr3_1:85409769-85409788 | Msa0382670:intron | 25.0% |
! | TTCTGAACAAACACTTATAA+AGG | + | chr3_1:85410024-85410043 | Msa0382670:intron | 25.0% |
!! | AAATAGATTTGCTCATGTAA+TGG | + | chr3_1:85410048-85410067 | Msa0382670:intron | 25.0% |
!!! | TTTTAAAAGAGTTCCAAGTA+CGG | - | chr3_1:85410125-85410144 | None:intergenic | 25.0% |
! | AACAAAAACTTCAGGAATTT+AGG | - | chr3_1:85410298-85410317 | None:intergenic | 25.0% |
! | ATAAGATGAACAAAAACTTC+AGG | - | chr3_1:85410306-85410325 | None:intergenic | 25.0% |
! | TAAAAAAAAATAGGAGCGAA+TGG | + | chr3_1:85410599-85410618 | Msa0382670:intron | 25.0% |
! | CTTAAAAGAATCAGATAAGA+GGG | + | chr3_1:85410692-85410711 | Msa0382670:intron | 25.0% |
!! | AGAGTTGTAATTTTCACAAA+TGG | - | chr3_1:85410730-85410749 | None:intergenic | 25.0% |
! | GGATCTAGATATTAATGAAT+TGG | + | chr3_1:85410931-85410950 | Msa0382670:intron | 25.0% |
!! | TGGTTTTTGACATATTACTA+TGG | + | chr3_1:85410963-85410982 | Msa0382670:intron | 25.0% |
!! | AAATAGATTTGCTCATGTAA+TGG | + | chr3_1:85410048-85410067 | Msa0382670:intron | 25.0% |
!! | CTTTCAAACTCAAGAAATTT+TGG | - | chr3_1:85411396-85411415 | None:intergenic | 25.0% |
!!! | CTAATTAGAGGTACTTTTTT+AGG | + | chr3_1:85411854-85411873 | Msa0382670:intron | 25.0% |
!!! | AGTTTTGACTTTGATTGATA+AGG | + | chr3_1:85411977-85411996 | Msa0382670:intron | 25.0% |
!!! | CCATTTGTTTTATATACCAA+TGG | - | chr3_1:85412475-85412494 | None:intergenic | 25.0% |
! | CCATTGGTATATAAAACAAA+TGG | + | chr3_1:85412472-85412491 | Msa0382670:intron | 25.0% |
! | TAATACGAAATGGTTTCTTT+AGG | + | chr3_1:85412566-85412585 | Msa0382670:intron | 25.0% |
! | AATACGAAATGGTTTCTTTA+GGG | + | chr3_1:85412567-85412586 | Msa0382670:intron | 25.0% |
!!! | AATTGGATGTAAGTATTGAT+TGG | + | chr3_1:85412947-85412966 | Msa0382670:intron | 25.0% |
!! | GACAAATAAAGCTTTATAGA+GGG | - | chr3_1:85413023-85413042 | None:intergenic | 25.0% |
!! | TGACAAATAAAGCTTTATAG+AGG | - | chr3_1:85413024-85413043 | None:intergenic | 25.0% |
! | AACATTTACAGTTCTTTGTT+GGG | + | chr3_1:85413159-85413178 | Msa0382670:intron | 25.0% |
! | AAACAAGTCTATATACAGTA+TGG | - | chr3_1:85413333-85413352 | None:intergenic | 25.0% |
! | TATCACTTTATTGTTTCCAT+TGG | + | chr3_1:85413372-85413391 | Msa0382670:intron | 25.0% |
!! | ATTGATTAATTTTTCATCGC+AGG | + | chr3_1:85413750-85413769 | Msa0382670:intron | 25.0% |
! | AAATTTATATCAGATGCAGT+AGG | + | chr3_1:85413805-85413824 | Msa0382670:CDS | 25.0% |
! | TTTCTTCTATATCTCGTATA+AGG | + | chr3_1:85414294-85414313 | Msa0382670:three_prime_UTR | 25.0% |
TTGTTTCAGTTTCATGAAAC+TGG | + | chr3_1:85409499-85409518 | Msa0382670:intron | 30.0% | |
ACAAGATTAGAGAGTAAGTT+GGG | + | chr3_1:85409620-85409639 | Msa0382670:intron | 30.0% | |
! | CTACCATCTTTTCTACTAAT+AGG | - | chr3_1:85409651-85409670 | None:intergenic | 30.0% |
! | AAACTAGACTTAGGTTGTTT+GGG | + | chr3_1:85409671-85409690 | Msa0382670:intron | 30.0% |
AACGATAGTAGACAAAATAG+AGG | + | chr3_1:85409726-85409745 | Msa0382670:intron | 30.0% | |
ACGATAGTAGACAAAATAGA+GGG | + | chr3_1:85409727-85409746 | Msa0382670:intron | 30.0% | |
! | TACAAACTCGGAAGAAATTT+TGG | - | chr3_1:85410186-85410205 | None:intergenic | 30.0% |
!! | GATTATCACTGATTCAAAGA+AGG | - | chr3_1:85410461-85410480 | None:intergenic | 30.0% |
ATCATTGTGAACTCTATGTT+TGG | + | chr3_1:85410547-85410566 | Msa0382670:intron | 30.0% | |
ATACAACAATGTCATTACTC+TGG | - | chr3_1:85410576-85410595 | None:intergenic | 30.0% | |
GCTTAAAAGAATCAGATAAG+AGG | + | chr3_1:85410691-85410710 | Msa0382670:intron | 30.0% | |
! | CAACCATCTTTTCTTACTAT+AGG | - | chr3_1:85410795-85410814 | None:intergenic | 30.0% |
!! | AAACTAGACTTAGGTTGTTT+TGG | + | chr3_1:85409671-85409690 | Msa0382670:intron | 30.0% |
GTTTCTCTTATAGCTTATCT+AGG | - | chr3_1:85410902-85410921 | None:intergenic | 30.0% | |
TAATGAATTGGTGAAAGACA+TGG | + | chr3_1:85410943-85410962 | Msa0382670:intron | 30.0% | |
!!! | TTTTAGCTTCAAAAGTGAGA+AGG | - | chr3_1:85411069-85411088 | None:intergenic | 30.0% |
ATAAGATGAACAAACACTTG+AGG | - | chr3_1:85411676-85411695 | None:intergenic | 30.0% | |
!!! | AGGAAGTTTTTTTCTCTTTG+CGG | + | chr3_1:85411874-85411893 | Msa0382670:intron | 30.0% |
! | TTTGACTTTGATTGATAAGG+TGG | + | chr3_1:85411980-85411999 | Msa0382670:intron | 30.0% |
GTGTAAAAGTTATACGCTTA+AGG | + | chr3_1:85412023-85412042 | Msa0382670:intron | 30.0% | |
!!! | CTTTTGATTCACTTTTTGGT+GGG | - | chr3_1:85412225-85412244 | None:intergenic | 30.0% |
!! | CTTCCTTTTGATTCACTTTT+TGG | - | chr3_1:85412229-85412248 | None:intergenic | 30.0% |
AATCAAAAGGAAGTCATAGT+TGG | + | chr3_1:85412236-85412255 | Msa0382670:CDS | 30.0% | |
AGTGATAACATTGACAACTA+TGG | - | chr3_1:85412288-85412307 | None:intergenic | 30.0% | |
AAAATGTTCACTCTGATATC+TGG | + | chr3_1:85412379-85412398 | Msa0382670:intron | 30.0% | |
TATTTATGCAGGTATTCAAC+TGG | + | chr3_1:85412714-85412733 | Msa0382670:intron | 30.0% | |
GTATCAACAGTCAAATGAAT+GGG | - | chr3_1:85412801-85412820 | None:intergenic | 30.0% | |
TGTATCAACAGTCAAATGAA+TGG | - | chr3_1:85412802-85412821 | None:intergenic | 30.0% | |
ATTCATTTGACTGTTGATAC+AGG | + | chr3_1:85412801-85412820 | Msa0382670:CDS | 30.0% | |
GTGTCAAACAATTTATCTCT+TGG | + | chr3_1:85412858-85412877 | Msa0382670:CDS | 30.0% | |
AAGGAAAAAAGAAAGAAAGC+GGG | - | chr3_1:85412989-85413008 | None:intergenic | 30.0% | |
GAAGGAAAAAAGAAAGAAAG+CGG | - | chr3_1:85412990-85413009 | None:intergenic | 30.0% | |
AAAGAACTGTAAATGTTCAC+GGG | - | chr3_1:85413156-85413175 | None:intergenic | 30.0% | |
CAAAGAACTGTAAATGTTCA+CGG | - | chr3_1:85413157-85413176 | None:intergenic | 30.0% | |
GAACATTTACAGTTCTTTGT+TGG | + | chr3_1:85413158-85413177 | Msa0382670:intron | 30.0% | |
ACATTTACAGTTCTTTGTTG+GGG | + | chr3_1:85413160-85413179 | Msa0382670:intron | 30.0% | |
ATATACAGTATGGTGAAACT+TGG | - | chr3_1:85413323-85413342 | None:intergenic | 30.0% | |
! | AATGTCAGTTGATATCCTAA+AGG | + | chr3_1:85413571-85413590 | Msa0382670:intron | 30.0% |
!! | CAAATATGTTGATGATGTTG+TGG | + | chr3_1:85413679-85413698 | Msa0382670:CDS | 30.0% |
TACTACTCACTTTATTGTCT+AGG | + | chr3_1:85413722-85413741 | Msa0382670:intron | 30.0% | |
! | ATTAATTTTTCATCGCAGGA+AGG | + | chr3_1:85413754-85413773 | Msa0382670:intron | 30.0% |
! | TTAATTTTTCATCGCAGGAA+GGG | + | chr3_1:85413755-85413774 | Msa0382670:intron | 30.0% |
!! | AATTTCCCAATTTTGTTGTC+TGG | - | chr3_1:85413790-85413809 | None:intergenic | 30.0% |
AAGCTTATCAAAATCAGATG+GGG | - | chr3_1:85413848-85413867 | None:intergenic | 30.0% | |
CAAGCTTATCAAAATCAGAT+GGG | - | chr3_1:85413849-85413868 | None:intergenic | 30.0% | |
ACAAGCTTATCAAAATCAGA+TGG | - | chr3_1:85413850-85413869 | None:intergenic | 30.0% | |
CAGTCAGAATTACAAAATCT+GGG | - | chr3_1:85414139-85414158 | None:intergenic | 30.0% | |
ACAGTCAGAATTACAAAATC+TGG | - | chr3_1:85414140-85414159 | None:intergenic | 30.0% | |
! | AGTTTCTGGAAAATATGACA+AGG | - | chr3_1:85414196-85414215 | None:intergenic | 30.0% |
ATTCTGATACTACAAGTTTC+TGG | - | chr3_1:85414210-85414229 | None:intergenic | 30.0% | |
!! | TTTTTGTTGTATTTTGCGCA+TGG | + | chr3_1:85414256-85414275 | Msa0382670:three_prime_UTR | 30.0% |
GAGGAACAGCATATGAATTA+CGG | - | chr3_1:85409252-85409271 | None:intergenic | 35.0% | |
! | TGATCAATGGATTCATTGTG+AGG | - | chr3_1:85409271-85409290 | None:intergenic | 35.0% |
TCACAATGAATCCATTGATC+AGG | + | chr3_1:85409270-85409289 | Msa0382670:CDS | 35.0% | |
TTTGTTTGGAAGCCAAAGTA+AGG | + | chr3_1:85409417-85409436 | Msa0382670:intron | 35.0% | |
ATTGCTCGAACTAATCAGAT+AGG | + | chr3_1:85409543-85409562 | Msa0382670:intron | 35.0% | |
GACAAGATTAGAGAGTAAGT+TGG | + | chr3_1:85409619-85409638 | Msa0382670:intron | 35.0% | |
GCACCTATTAGTAGAAAAGA+TGG | + | chr3_1:85409645-85409664 | Msa0382670:intron | 35.0% | |
AGATGGTAGAAACTAGACTT+AGG | + | chr3_1:85409662-85409681 | Msa0382670:intron | 35.0% | |
! | GAAACTAGACTTAGGTTGTT+TGG | + | chr3_1:85409670-85409689 | Msa0382670:intron | 35.0% |
CGATAGTAGACAAAATAGAG+GGG | + | chr3_1:85409728-85409747 | Msa0382670:intron | 35.0% | |
! | TGGTTTTTGACATAACACCA+TGG | + | chr3_1:85409801-85409820 | Msa0382670:intron | 35.0% |
TCAGAAGTTCATGCTCTTAA+TGG | - | chr3_1:85410010-85410029 | None:intergenic | 35.0% | |
CTAATTCCCACATTAAGTGT+GGG | - | chr3_1:85410099-85410118 | None:intergenic | 35.0% | |
AAAAAATAGGAGCGAATGGA+TGG | + | chr3_1:85410603-85410622 | Msa0382670:intron | 35.0% | |
AAGAATCAGATAAGAGGGAA+TGG | + | chr3_1:85410697-85410716 | Msa0382670:intron | 35.0% | |
TGACAACATTAGAAGAGAGT+TGG | + | chr3_1:85410762-85410781 | Msa0382670:intron | 35.0% | |
GACAACATTAGAAGAGAGTT+GGG | + | chr3_1:85410763-85410782 | Msa0382670:intron | 35.0% | |
ACAACATTAGAAGAGAGTTG+GGG | + | chr3_1:85410764-85410783 | Msa0382670:intron | 35.0% | |
GCACCTATAGTAAGAAAAGA+TGG | + | chr3_1:85410789-85410808 | Msa0382670:intron | 35.0% | |
AGATGGTTGAAACTAGACTT+AGG | + | chr3_1:85410806-85410825 | Msa0382670:intron | 35.0% | |
!!! | TTTTAGCTTCGAAAGCAAGA+AGG | - | chr3_1:85411107-85411126 | None:intergenic | 35.0% |
TTGCTTTCGAAGCTAAAACA+TGG | + | chr3_1:85411109-85411128 | Msa0382670:intron | 35.0% | |
CTAATTCCCACATTAAGTGT+GGG | - | chr3_1:85410099-85410118 | None:intergenic | 35.0% | |
!! | AGAGACCCACTTTCATTTTT+GGG | - | chr3_1:85411547-85411566 | None:intergenic | 35.0% |
! | AAGAGACCCACTTTCATTTT+TGG | - | chr3_1:85411548-85411567 | None:intergenic | 35.0% |
AAAAATGAAAGTGGGTCTCT+TGG | + | chr3_1:85411547-85411566 | Msa0382670:intron | 35.0% | |
AAAATGAAAGTGGGTCTCTT+GGG | + | chr3_1:85411548-85411567 | Msa0382670:intron | 35.0% | |
TAGATCTGGGAAATTATAGG+AGG | - | chr3_1:85411607-85411626 | None:intergenic | 35.0% | |
AACAAACACTTGAGGAACTT+AGG | - | chr3_1:85411668-85411687 | None:intergenic | 35.0% | |
TCTGATTCATCTCATACAAG+AGG | - | chr3_1:85411753-85411772 | None:intergenic | 35.0% | |
! | AATTGTTCTGACCTTTTTCC+AGG | + | chr3_1:85412160-85412179 | Msa0382670:intron | 35.0% |
GGGACAACAACATATTATGA+TGG | - | chr3_1:85412205-85412224 | None:intergenic | 35.0% | |
!!! | CCTTTTGATTCACTTTTTGG+TGG | - | chr3_1:85412226-85412245 | None:intergenic | 35.0% |
CCACCAAAAAGTGAATCAAA+AGG | + | chr3_1:85412223-85412242 | Msa0382670:CDS | 35.0% | |
AAAAGGAAGTCATAGTTGGA+TGG | + | chr3_1:85412240-85412259 | Msa0382670:CDS | 35.0% | |
!! | CTTTGAAATCCATATGACGT+AGG | + | chr3_1:85412353-85412372 | Msa0382670:intron | 35.0% |
! | CATTTTGAACCTACGTCATA+TGG | - | chr3_1:85412365-85412384 | None:intergenic | 35.0% |
!!! | TTTTTTATGGGAAGACCCAT+TGG | + | chr3_1:85412456-85412475 | Msa0382670:intron | 35.0% |
! | GTTTCTTTAGAGATCATCAC+TGG | + | chr3_1:85412494-85412513 | Msa0382670:intron | 35.0% |
! | GTTTCTTTAGAGATCATCAC+TGG | + | chr3_1:85412494-85412513 | Msa0382670:intron | 35.0% |
CAAATACACCACTAAAGAAG+AGG | - | chr3_1:85412652-85412671 | None:intergenic | 35.0% | |
CTCTTCTTTAGTGGTGTATT+TGG | + | chr3_1:85412650-85412669 | Msa0382670:intron | 35.0% | |
CTTCTCGAGAATAAAACTCA+TGG | - | chr3_1:85412770-85412789 | None:intergenic | 35.0% | |
ACAGTCAAATGAATGGGATT+GGG | - | chr3_1:85412795-85412814 | None:intergenic | 35.0% | |
AACAGTCAAATGAATGGGAT+TGG | - | chr3_1:85412796-85412815 | None:intergenic | 35.0% | |
! | GTTTGACACATAAGCTTTGA+TGG | - | chr3_1:85412847-85412866 | None:intergenic | 35.0% |
ACAATTTATCTCTTGGAGAC+AGG | + | chr3_1:85412865-85412884 | Msa0382670:CDS | 35.0% | |
ACAGTTTCAAGAAATTCCAC+TGG | + | chr3_1:85412899-85412918 | Msa0382670:CDS | 35.0% | |
ATAGAGGGAGAAGAATAAGA+AGG | - | chr3_1:85413008-85413027 | None:intergenic | 35.0% | |
CAAGCTTCGGCAAATATATA+AGG | - | chr3_1:85413060-85413079 | None:intergenic | 35.0% | |
! | AATGTTCACGGGTTGTATAA+AGG | - | chr3_1:85413145-85413164 | None:intergenic | 35.0% |
CATTTACAGTTCTTTGTTGG+GGG | + | chr3_1:85413161-85413180 | Msa0382670:intron | 35.0% | |
GAGAAAATCAATCCAGTAGT+AGG | + | chr3_1:85413205-85413224 | Msa0382670:intron | 35.0% | |
! | CAATTAGAGGCTTTGTCATT+TGG | - | chr3_1:85413298-85413317 | None:intergenic | 35.0% |
GATTGACACAACATTACCAA+TGG | - | chr3_1:85413391-85413410 | None:intergenic | 35.0% | |
TTGCACCAGACAACAAAATT+GGG | + | chr3_1:85413782-85413801 | Msa0382670:CDS | 35.0% | |
AGCTTATCAAAATCAGATGG+GGG | - | chr3_1:85413847-85413866 | None:intergenic | 35.0% | |
! | TGTTACTGTGTTTTACGAAG+TGG | + | chr3_1:85413902-85413921 | Msa0382670:intron | 35.0% |
! | GTTACTGTGTTTTACGAAGT+GGG | + | chr3_1:85413903-85413922 | Msa0382670:intron | 35.0% |
!! | TCACCTAACATAGCTTTGTT+TGG | + | chr3_1:85414012-85414031 | Msa0382670:intron | 35.0% |
CTTGGCAGAAAAATTGAACA+CGG | + | chr3_1:85414110-85414129 | Msa0382670:CDS | 35.0% | |
AAATATGACAAGGAAACCTC+CGG | - | chr3_1:85414186-85414205 | None:intergenic | 35.0% | |
TAAAATGTAGATGGAGGCGA+GGG | - | chr3_1:85409301-85409320 | None:intergenic | 40.0% | |
TTAAAATGTAGATGGAGGCG+AGG | - | chr3_1:85409302-85409321 | None:intergenic | 40.0% | |
CTCGAACTAATCAGATAGGA+GGG | + | chr3_1:85409547-85409566 | Msa0382670:intron | 40.0% | |
ACTAATCAGATAGGAGGGAT+TGG | + | chr3_1:85409552-85409571 | Msa0382670:intron | 40.0% | |
!! | GAATGAGTTGGTGAAAGACA+TGG | + | chr3_1:85409781-85409800 | Msa0382670:intron | 40.0% |
ACATGAATCAAATGACGCCA+TGG | - | chr3_1:85409821-85409840 | None:intergenic | 40.0% | |
GCGTCATTTGATTCATGTAG+CGG | + | chr3_1:85409823-85409842 | Msa0382670:intron | 40.0% | |
TTTCAGCTTCAAAAGCGAGA+AGG | - | chr3_1:85409961-85409980 | None:intergenic | 40.0% | |
!!! | TCGCTTTTGAAGCTGAAACA+TGG | + | chr3_1:85409963-85409982 | Msa0382670:intron | 40.0% |
!!! | CTTTTGAAGCTGAAACATGG+AGG | + | chr3_1:85409966-85409985 | Msa0382670:intron | 40.0% |
GCTAATTCCCACATTAAGTG+TGG | - | chr3_1:85410100-85410119 | None:intergenic | 40.0% | |
AGGAATTTAGGAACAGAACC+CGG | - | chr3_1:85410286-85410305 | None:intergenic | 40.0% | |
! | TTTTTGTCTAGATAAGGGCG+AGG | + | chr3_1:85410330-85410349 | Msa0382670:intron | 40.0% |
TCTGATTCCTCTCATACAAG+AGG | - | chr3_1:85410383-85410402 | None:intergenic | 40.0% | |
TTCATTCCAGTTTCATGAGC+TGG | - | chr3_1:85410653-85410672 | None:intergenic | 40.0% | |
TGTAACGAGAGTAGATCAGA+AGG | + | chr3_1:85410867-85410886 | Msa0382670:intron | 40.0% | |
GCGTCATTTGATTCATGTAG+CGG | + | chr3_1:85409823-85409842 | Msa0382670:intron | 40.0% | |
!! | AAGCCTTATTCCACTAAGTG+GGG | - | chr3_1:85411012-85411031 | None:intergenic | 40.0% |
!! | CAAGCCTTATTCCACTAAGT+GGG | - | chr3_1:85411013-85411032 | None:intergenic | 40.0% |
TCAGATGTTCACGCTCTTAA+TGG | - | chr3_1:85411157-85411176 | None:intergenic | 40.0% | |
GCTAATTCCCACATTAAGTG+TGG | - | chr3_1:85410100-85410119 | None:intergenic | 40.0% | |
GTAGAATCGTACCTTGATGA+GGG | - | chr3_1:85411577-85411596 | None:intergenic | 40.0% | |
AGTAGAATCGTACCTTGATG+AGG | - | chr3_1:85411578-85411597 | None:intergenic | 40.0% | |
CGCTAGATCTGGGAAATTAT+AGG | - | chr3_1:85411610-85411629 | None:intergenic | 40.0% | |
! | TTTTTGTCTAGATAAGGGCG+AGG | + | chr3_1:85410330-85410349 | Msa0382670:intron | 40.0% |
GAAGAAATAGACACGACTAC+AGG | - | chr3_1:85412058-85412077 | None:intergenic | 40.0% | |
! | TGATATCTGGAAGTGTGGAA+TGG | + | chr3_1:85412392-85412411 | Msa0382670:intron | 40.0% |
! | GTTTCTTTAGGGATCATCAC+TGG | + | chr3_1:85412578-85412597 | Msa0382670:intron | 40.0% |
CTAAGTTGCCTCTTCTTTAG+TGG | + | chr3_1:85412641-85412660 | Msa0382670:intron | 40.0% | |
! | AGTGGTGTATTTGGTGATCT+TGG | + | chr3_1:85412659-85412678 | Msa0382670:intron | 40.0% |
! | GTGGTGTATTTGGTGATCTT+GGG | + | chr3_1:85412660-85412679 | Msa0382670:intron | 40.0% |
GTTGATACAGGATTCACAAC+TGG | + | chr3_1:85412813-85412832 | Msa0382670:CDS | 40.0% | |
ATACAGGATTCACAACTGGA+GGG | + | chr3_1:85412817-85412836 | Msa0382670:CDS | 40.0% | |
AATTCCACTGGATCTTCGTA+TGG | + | chr3_1:85412911-85412930 | Msa0382670:CDS | 40.0% | |
ACACTTACACTACCTACTAC+TGG | - | chr3_1:85413220-85413239 | None:intergenic | 40.0% | |
GTGAAACTTGGCTCAATTAG+AGG | - | chr3_1:85413311-85413330 | None:intergenic | 40.0% | |
TCACTTCTGAACCAAGCAAT+TGG | + | chr3_1:85413425-85413444 | Msa0382670:intron | 40.0% | |
TGAAAAGACCTCCAATTGCT+TGG | - | chr3_1:85413439-85413458 | None:intergenic | 40.0% | |
AAAATCCCCTCTGACTTAGA+AGG | + | chr3_1:85413608-85413627 | Msa0382670:CDS | 40.0% | |
GTTGCACCAGACAACAAAAT+TGG | + | chr3_1:85413781-85413800 | Msa0382670:CDS | 40.0% | |
AAATCAGATGGGGGCAATTT+GGG | - | chr3_1:85413838-85413857 | None:intergenic | 40.0% | |
AAAATCAGATGGGGGCAATT+TGG | - | chr3_1:85413839-85413858 | None:intergenic | 40.0% | |
CAGCCAAACAAAGCTATGTT+AGG | - | chr3_1:85414018-85414037 | None:intergenic | 40.0% | |
ACACATGCTTCATCTGTTTC+AGG | + | chr3_1:85414038-85414057 | Msa0382670:intron | 40.0% | |
CACAAGAACTCAACTTAGCT+TGG | + | chr3_1:85414092-85414111 | Msa0382670:CDS | 40.0% | |
AATATGACAAGGAAACCTCC+GGG | - | chr3_1:85414185-85414204 | None:intergenic | 40.0% | |
GAATTGCAACACTGTGCGAT+TGG | - | chr3_1:85409074-85409093 | None:intergenic | 45.0% | |
TTCTCAGAGCTTATCCGCTA+AGG | + | chr3_1:85409111-85409130 | Msa0382670:CDS | 45.0% | |
CAGATGTTGAATACGACGAG+AGG | - | chr3_1:85409142-85409161 | None:intergenic | 45.0% | |
CTTGGATCTGTTCTTCCTGA+TGG | + | chr3_1:85409214-85409233 | Msa0382670:CDS | 45.0% | |
CGGATATCAACAGTTCCATC+AGG | - | chr3_1:85409232-85409251 | None:intergenic | 45.0% | |
GCTCGAACTAATCAGATAGG+AGG | + | chr3_1:85409546-85409565 | Msa0382670:intron | 45.0% | |
!! | AAGCCTTATTCCACCAAGTG+GGG | - | chr3_1:85409850-85409869 | None:intergenic | 45.0% |
!! | CAAGCCTTATTCCACCAAGT+GGG | - | chr3_1:85409851-85409870 | None:intergenic | 45.0% |
TTAGCTGCCCACACTTAATG+TGG | + | chr3_1:85410089-85410108 | Msa0382670:intron | 45.0% | |
TAGCTGCCCACACTTAATGT+GGG | + | chr3_1:85410090-85410109 | Msa0382670:intron | 45.0% | |
! | TGGGAATTAGCTTCCGTACT+TGG | + | chr3_1:85410109-85410128 | Msa0382670:intron | 45.0% |
CGCTGCATCTGGGAAATTAT+AGG | - | chr3_1:85410240-85410259 | None:intergenic | 45.0% | |
TCTGACACCTCTTGTATGAG+AGG | + | chr3_1:85410373-85410392 | Msa0382670:intron | 45.0% | |
TTCACTCCAGCTCATGAAAC+TGG | + | chr3_1:85410644-85410663 | Msa0382670:intron | 45.0% | |
!! | CCAAGCCTTATTCCACTAAG+TGG | - | chr3_1:85411014-85411033 | None:intergenic | 45.0% |
CCACTTAGTGGAATAAGGCT+TGG | + | chr3_1:85411011-85411030 | Msa0382670:intron | 45.0% | |
TTAGCTGCCCACACTTAATG+TGG | + | chr3_1:85410089-85410108 | Msa0382670:intron | 45.0% | |
TAGCTGCCCACACTTAATGT+GGG | + | chr3_1:85410090-85410109 | Msa0382670:intron | 45.0% | |
ACGGGACCCAAAAATGAAAG+TGG | + | chr3_1:85411538-85411557 | Msa0382670:intron | 45.0% | |
CGGGACCCAAAAATGAAAGT+GGG | + | chr3_1:85411539-85411558 | Msa0382670:intron | 45.0% | |
AGGAACTTAGGAACAGAACC+CGG | - | chr3_1:85411656-85411675 | None:intergenic | 45.0% | |
! | TGTTCTGACCTTTTTCCAGG+TGG | + | chr3_1:85412163-85412182 | Msa0382670:intron | 45.0% |
CACTCTGATATCTGGAAGTG+TGG | + | chr3_1:85412387-85412406 | Msa0382670:intron | 45.0% | |
! | GTGTATTTGGTGATCTTGGG+AGG | + | chr3_1:85412663-85412682 | Msa0382670:intron | 45.0% |
TGCAGGTATTCAACTGGACT+TGG | + | chr3_1:85412720-85412739 | Msa0382670:intron | 45.0% | |
TCAACTGGACTTGGAGTAAC+TGG | + | chr3_1:85412729-85412748 | Msa0382670:CDS | 45.0% | |
GATACAGGATTCACAACTGG+AGG | + | chr3_1:85412816-85412835 | Msa0382670:CDS | 45.0% | |
TACAGGATTCACAACTGGAG+GGG | + | chr3_1:85412818-85412837 | Msa0382670:CDS | 45.0% | |
TCAACCATACGAAGATCCAG+TGG | - | chr3_1:85412918-85412937 | None:intergenic | 45.0% | |
ATGGTTGAAGCTGAGCGAAT+TGG | + | chr3_1:85412930-85412949 | Msa0382670:CDS | 45.0% | |
CTTCTGAACCAAGCAATTGG+AGG | + | chr3_1:85413428-85413447 | Msa0382670:intron | 45.0% | |
TGTCAACAGTGGTTGCCTTT+AGG | - | chr3_1:85413589-85413608 | None:intergenic | 45.0% | |
! | AGAGGGGATTTTGTCAACAG+TGG | - | chr3_1:85413600-85413619 | None:intergenic | 45.0% |
TCCATGCCTTCTAAGTCAGA+GGG | - | chr3_1:85413617-85413636 | None:intergenic | 45.0% | |
TTCCATGCCTTCTAAGTCAG+AGG | - | chr3_1:85413618-85413637 | None:intergenic | 45.0% | |
!! | AGAAGGCATGGAAGCATCAA+TGG | + | chr3_1:85413625-85413644 | Msa0382670:CDS | 45.0% |
GTTTCAGGATCACTTGCTCA+TGG | + | chr3_1:85414053-85414072 | Msa0382670:intron | 45.0% | |
ATATGACAAGGAAACCTCCG+GGG | - | chr3_1:85414184-85414203 | None:intergenic | 45.0% | |
!! | TTCATTAAAAAAATTATTAT+AGG | - | chr3_1:85411813-85411832 | None:intergenic | 5.0% |
!! | AGCGGATAAGCTCTGAGAAG+AGG | - | chr3_1:85409110-85409129 | None:intergenic | 50.0% |
GACGAGAGGATGAACCTTAG+CGG | - | chr3_1:85409128-85409147 | None:intergenic | 50.0% | |
ATGACGCGTTCAGCTTGATC+AGG | - | chr3_1:85409184-85409203 | None:intergenic | 50.0% | |
GATCAAGCTGAACGCGTCAT+TGG | + | chr3_1:85409184-85409203 | Msa0382670:CDS | 50.0% | |
GCATGTAGAGAGAAGACGTG+TGG | + | chr3_1:85409693-85409712 | Msa0382670:intron | 50.0% | |
!! | CCAAGCCTTATTCCACCAAG+TGG | - | chr3_1:85409852-85409871 | None:intergenic | 50.0% |
! | CCACTTGGTGGAATAAGGCT+TGG | + | chr3_1:85409849-85409868 | Msa0382670:intron | 50.0% |
AAGTGGTTGTCGCTGCATCT+GGG | - | chr3_1:85410250-85410269 | None:intergenic | 50.0% | |
AAAGTGGTTGTCGCTGCATC+TGG | - | chr3_1:85410251-85410270 | None:intergenic | 50.0% | |
ATGCAGCGACAACCACTTTC+TGG | + | chr3_1:85410252-85410271 | Msa0382670:intron | 50.0% | |
!! | CCACTTTCTGGCTTGATCAC+CGG | + | chr3_1:85410264-85410283 | Msa0382670:intron | 50.0% |
!! | CACTTTCTGGCTTGATCACC+GGG | + | chr3_1:85410265-85410284 | Msa0382670:intron | 50.0% |
CGAGAGTAGATCAGAAGGAG+AGG | + | chr3_1:85410872-85410891 | Msa0382670:intron | 50.0% | |
GGTCCCCACTTAGTGGAATA+AGG | + | chr3_1:85411006-85411025 | Msa0382670:intron | 50.0% | |
CTCTTGGGAAACCCTCATCA+AGG | + | chr3_1:85411563-85411582 | Msa0382670:intron | 50.0% | |
AAGTGGCTGTCGCTAGATCT+GGG | - | chr3_1:85411620-85411639 | None:intergenic | 50.0% | |
AAAGTGGCTGTCGCTAGATC+TGG | - | chr3_1:85411621-85411640 | None:intergenic | 50.0% | |
! | ATCTAGCGACAGCCACTTTC+TGG | + | chr3_1:85411622-85411641 | Msa0382670:intron | 50.0% |
!! | CCACTTTCTGGCTTGATCAC+CGG | + | chr3_1:85410264-85410283 | Msa0382670:intron | 50.0% |
!! | CACTTTCTGGCTTGATCACC+GGG | + | chr3_1:85410265-85410284 | Msa0382670:intron | 50.0% |
ACTGGACTTGGAGTAACTGG+TGG | + | chr3_1:85412732-85412751 | Msa0382670:CDS | 50.0% | |
ACAGGATTCACAACTGGAGG+GGG | + | chr3_1:85412819-85412838 | Msa0382670:CDS | 50.0% | |
GAGCTTCAGGACACAAGCTT+CGG | - | chr3_1:85413073-85413092 | None:intergenic | 50.0% | |
AATAGGCAACCACGAGCTTC+AGG | - | chr3_1:85413086-85413105 | None:intergenic | 50.0% | |
CCATGCCTTCTAAGTCAGAG+GGG | - | chr3_1:85413616-85413635 | None:intergenic | 50.0% | |
GCTTGTGAACGACAGCTTAC+AGG | + | chr3_1:85413864-85413883 | Msa0382670:CDS | 50.0% | |
TTCTGACTGTCTCTGAGCGA+AGG | + | chr3_1:85414150-85414169 | Msa0382670:three_prime_UTR | 50.0% | |
! | GAGCGAAGGCAATTTTTCCC+CGG | + | chr3_1:85414164-85414183 | Msa0382670:three_prime_UTR | 50.0% |
! | TTTTGCGCATGGCAACGCAT+AGG | + | chr3_1:85414267-85414286 | Msa0382670:three_prime_UTR | 50.0% |
ACACGTCTTGTGAGCAGCGA+AGG | + | chr3_1:85409012-85409031 | Msa0382670:five_prime_UTR | 55.0% | |
TCCAACCTCCTCTGCGAACA+TGG | + | chr3_1:85409042-85409061 | Msa0382670:exon | 55.0% | |
CGCGTCATTGGAACGCTTCT+TGG | + | chr3_1:85409196-85409215 | Msa0382670:CDS | 55.0% | |
CGAGGGAAGGACCTGATCAA+TGG | - | chr3_1:85409284-85409303 | None:intergenic | 55.0% | |
ATGTAGATGGAGGCGAGGGA+AGG | - | chr3_1:85409297-85409316 | None:intergenic | 55.0% | |
!! | TTCATGTAGCGGACCCCACT+TGG | + | chr3_1:85409834-85409853 | Msa0382670:intron | 55.0% |
! | GGACCCCACTTGGTGGAATA+AGG | + | chr3_1:85409844-85409863 | Msa0382670:intron | 55.0% |
CCGGTGATCAAGCCAGAAAG+TGG | - | chr3_1:85410267-85410286 | None:intergenic | 55.0% | |
ATGTAGCGGTCCCCACTTAG+TGG | + | chr3_1:85410999-85411018 | Msa0382670:intron | 55.0% | |
CCGGTGATCAAGCCAGAAAG+TGG | - | chr3_1:85410267-85410286 | None:intergenic | 55.0% | |
! | GACCTTTTTCCAGGTGGCGT+TGG | + | chr3_1:85412169-85412188 | Msa0382670:intron | 55.0% |
GTCCAACGCCACCTGGAAAA+AGG | - | chr3_1:85412174-85412193 | None:intergenic | 55.0% | |
ACTCTATGTCCAACGCCACC+TGG | - | chr3_1:85412181-85412200 | None:intergenic | 55.0% | |
AGCTTGTGTCCTGAAGCTCG+TGG | + | chr3_1:85413074-85413093 | Msa0382670:intron | 55.0% | |
CCCCTCTGACTTAGAAGGCA+TGG | + | chr3_1:85413613-85413632 | Msa0382670:CDS | 55.0% | |
! | CGAAGGCAATTTTTCCCCGG+AGG | + | chr3_1:85414167-85414186 | Msa0382670:three_prime_UTR | 55.0% |
GCCATGTTCGCAGAGGAGGT+TGG | - | chr3_1:85409046-85409065 | None:intergenic | 60.0% | |
TGACGCCATGTTCGCAGAGG+AGG | - | chr3_1:85409050-85409069 | None:intergenic | 60.0% | |
GGTTGACGCCATGTTCGCAG+AGG | - | chr3_1:85409053-85409072 | None:intergenic | 60.0% | |
!! | ATGTAGCGGACCCCACTTGG+TGG | + | chr3_1:85409837-85409856 | Msa0382670:intron | 60.0% |
TGCGCATGGCAACGCATAGG+TGG | + | chr3_1:85414270-85414289 | Msa0382670:three_prime_UTR | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 85408974 | 85414414 | 85408974 | ID=Msa0382670;Name=Msa0382670 |
chr3_1 | mRNA | 85408974 | 85414414 | 85408974 | ID=Msa0382670-mRNA-1;Parent=Msa0382670;Name=Msa0382670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=87|1|1|1|1|1|6|265|288 |
chr3_1 | exon | 85408974 | 85409291 | 85408974 | ID=Msa0382670-mRNA-1:exon:22373;Parent=Msa0382670-mRNA-1 |
chr3_1 | exon | 85412182 | 85412261 | 85412182 | ID=Msa0382670-mRNA-1:exon:22374;Parent=Msa0382670-mRNA-1 |
chr3_1 | exon | 85412725 | 85412954 | 85412725 | ID=Msa0382670-mRNA-1:exon:22375;Parent=Msa0382670-mRNA-1 |
chr3_1 | exon | 85413579 | 85413700 | 85413579 | ID=Msa0382670-mRNA-1:exon:22376;Parent=Msa0382670-mRNA-1 |
chr3_1 | exon | 85413772 | 85413885 | 85413772 | ID=Msa0382670-mRNA-1:exon:22377;Parent=Msa0382670-mRNA-1 |
chr3_1 | exon | 85414060 | 85414414 | 85414060 | ID=Msa0382670-mRNA-1:exon:22378;Parent=Msa0382670-mRNA-1 |
chr3_1 | five_prime_UTR | 85408974 | 85409060 | 85408974 | ID=Msa0382670-mRNA-1:five_prime_utr;Parent=Msa0382670-mRNA-1 |
chr3_1 | CDS | 85409061 | 85409291 | 85409061 | ID=Msa0382670-mRNA-1:cds;Parent=Msa0382670-mRNA-1 |
chr3_1 | CDS | 85412182 | 85412261 | 85412182 | ID=Msa0382670-mRNA-1:cds;Parent=Msa0382670-mRNA-1 |
chr3_1 | CDS | 85412725 | 85412954 | 85412725 | ID=Msa0382670-mRNA-1:cds;Parent=Msa0382670-mRNA-1 |
chr3_1 | CDS | 85413579 | 85413700 | 85413579 | ID=Msa0382670-mRNA-1:cds;Parent=Msa0382670-mRNA-1 |
chr3_1 | CDS | 85413772 | 85413885 | 85413772 | ID=Msa0382670-mRNA-1:cds;Parent=Msa0382670-mRNA-1 |
chr3_1 | CDS | 85414060 | 85414149 | 85414060 | ID=Msa0382670-mRNA-1:cds;Parent=Msa0382670-mRNA-1 |
chr3_1 | three_prime_UTR | 85414150 | 85414414 | 85414150 | ID=Msa0382670-mRNA-1:three_prime_utr;Parent=Msa0382670-mRNA-1 |
Gene Sequence |
Protein sequence |