Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379530 | XP_003602861.2 | 90.782 | 358 | 32 | 1 | 1 | 357 | 1 | 358 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379530 | sp|Q9FZ95|PUP3_ARATH | 56.598 | 341 | 137 | 2 | 13 | 353 | 1 | 330 | 7.70e-138 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379530 | G7J4H6 | 90.782 | 358 | 32 | 1 | 1 | 357 | 1 | 358 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0099350 | Msa0379530 | 0.816720 | 4.782331e-52 | -8.615850e-47 |
| Msa0099430 | Msa0379530 | 0.815941 | 7.141618e-52 | -8.615850e-47 |
| Msa0148000 | Msa0379530 | 0.835282 | 1.836915e-56 | -8.615850e-47 |
| Msa0198140 | Msa0379530 | 0.801945 | 7.086257e-49 | -8.615850e-47 |
| Msa0198220 | Msa0379530 | 0.805368 | 1.380818e-49 | -8.615850e-47 |
| Msa0379530 | Msa0384330 | 0.804893 | 1.735812e-49 | -8.615850e-47 |
| Msa0379530 | Msa0404210 | 0.916721 | 1.265748e-85 | -8.615850e-47 |
| Msa0379530 | Msa0475390 | 0.918606 | 1.265849e-86 | -8.615850e-47 |
| Msa0379530 | Msa0477070 | 0.802294 | 6.007075e-49 | -8.615850e-47 |
| Msa0379530 | Msa0521440 | 0.803778 | 2.963631e-49 | -8.615850e-47 |
| Msa0379530 | Msa0549550 | 0.807021 | 6.195370e-50 | -8.615850e-47 |
| Msa0379530 | Msa0578380 | 0.807312 | 5.374161e-50 | -8.615850e-47 |
| Msa0379530 | Msa0578890 | 0.813535 | 2.437086e-51 | -8.615850e-47 |
| Msa0379530 | Msa0646180 | 0.801823 | 7.507132e-49 | -8.615850e-47 |
| Msa0379530 | Msa0703640 | 0.805661 | 1.198724e-49 | -8.615850e-47 |
| Msa0379530 | Msa0708430 | 0.807724 | 4.394225e-50 | -8.615850e-47 |
| Msa0379530 | Msa0791780 | 0.805542 | 1.269773e-49 | -8.615850e-47 |
| Msa0379530 | Msa1018210 | 0.831015 | 2.121138e-55 | -8.615850e-47 |
| Msa0379530 | Msa1020500 | 0.810694 | 1.014565e-50 | -8.615850e-47 |
| Msa0379530 | Msa1029190 | 0.824227 | 9.050180e-54 | -8.615850e-47 |
| Msa0379530 | Msa1029200 | 0.805345 | 1.396038e-49 | -8.615850e-47 |
| Msa0379530 | Msa1055710 | 0.812540 | 4.027538e-51 | -8.615850e-47 |
| Msa0379530 | Msa1065620 | 0.824817 | 6.572051e-54 | -8.615850e-47 |
| Msa0379530 | Msa1111190 | 0.802485 | 5.485593e-49 | -8.615850e-47 |
| Msa0379530 | Msa1154770 | 0.824122 | 9.576485e-54 | -8.615850e-47 |
| Msa0379530 | Msa1465700 | -0.812221 | 4.728442e-51 | -8.615850e-47 |
| Msa0278340 | Msa0379530 | 0.802339 | 5.879061e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379530 | MtrunA17_Chr3g0132551 | 88.022 | 359 | 41 | 2 | 1 | 357 | 1 | 359 | 0.0 | 634 |
| Msa0379530 | MtrunA17_Chr3g0132561 | 82.402 | 358 | 28 | 2 | 1 | 357 | 1 | 324 | 0.0 | 580 |
| Msa0379530 | MtrunA17_Chr5g0426921 | 63.559 | 354 | 122 | 3 | 5 | 357 | 9 | 356 | 9.84e-152 | 431 |
| Msa0379530 | MtrunA17_Chr2g0296491 | 35.494 | 324 | 189 | 4 | 14 | 334 | 67 | 373 | 2.25e-63 | 207 |
| Msa0379530 | MtrunA17_Chr2g0283381 | 30.966 | 352 | 229 | 3 | 6 | 353 | 28 | 369 | 8.47e-60 | 197 |
| Msa0379530 | MtrunA17_Chr3g0102091 | 35.385 | 325 | 190 | 5 | 24 | 342 | 55 | 365 | 2.97e-58 | 193 |
| Msa0379530 | MtrunA17_Chr7g0249781 | 34.000 | 350 | 211 | 5 | 11 | 354 | 20 | 355 | 4.56e-58 | 192 |
| Msa0379530 | MtrunA17_Chr4g0055041 | 33.333 | 339 | 204 | 6 | 25 | 356 | 44 | 367 | 3.30e-55 | 185 |
| Msa0379530 | MtrunA17_Chr2g0296481 | 33.714 | 350 | 210 | 5 | 9 | 352 | 39 | 372 | 1.42e-54 | 184 |
| Msa0379530 | MtrunA17_Chr8g0346091 | 31.722 | 331 | 209 | 2 | 17 | 347 | 54 | 367 | 3.00e-50 | 172 |
| Msa0379530 | MtrunA17_Chr6g0483671 | 33.784 | 148 | 98 | 0 | 195 | 342 | 4 | 151 | 4.47e-24 | 97.1 |
| Msa0379530 | MtrunA17_Chr2g0313931 | 35.606 | 132 | 71 | 3 | 16 | 147 | 32 | 149 | 3.17e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379530 | AT1G28220.1 | 56.598 | 341 | 137 | 2 | 13 | 353 | 1 | 330 | 7.83e-139 | 399 |
| Msa0379530 | AT1G28230.1 | 57.440 | 336 | 139 | 2 | 13 | 347 | 1 | 333 | 2.02e-128 | 372 |
| Msa0379530 | AT2G33750.2 | 54.678 | 342 | 146 | 1 | 12 | 353 | 2 | 334 | 8.82e-128 | 370 |
| Msa0379530 | AT2G33750.1 | 52.975 | 353 | 146 | 2 | 12 | 353 | 2 | 345 | 5.20e-124 | 361 |
| Msa0379530 | AT4G18220.1 | 34.663 | 326 | 200 | 4 | 28 | 353 | 57 | 369 | 1.88e-56 | 189 |
| Msa0379530 | AT4G18205.1 | 34.294 | 347 | 213 | 5 | 11 | 356 | 34 | 366 | 5.74e-55 | 185 |
| Msa0379530 | AT4G18210.1 | 33.436 | 326 | 204 | 3 | 28 | 353 | 57 | 369 | 2.31e-51 | 176 |
| Msa0379530 | AT1G30840.2 | 33.819 | 343 | 207 | 7 | 3 | 341 | 11 | 337 | 2.02e-49 | 170 |
| Msa0379530 | AT1G30840.1 | 33.819 | 343 | 207 | 7 | 3 | 341 | 11 | 337 | 2.02e-49 | 170 |
| Msa0379530 | AT4G18195.1 | 33.236 | 343 | 214 | 5 | 10 | 351 | 39 | 367 | 4.09e-48 | 167 |
| Msa0379530 | AT4G18197.1 | 34.375 | 320 | 196 | 4 | 32 | 351 | 59 | 364 | 5.53e-48 | 167 |
| Msa0379530 | AT1G44750.6 | 30.145 | 345 | 225 | 3 | 11 | 353 | 26 | 356 | 6.30e-43 | 153 |
| Msa0379530 | AT1G44750.2 | 30.145 | 345 | 225 | 3 | 11 | 353 | 26 | 356 | 6.30e-43 | 153 |
| Msa0379530 | AT1G44750.1 | 30.145 | 345 | 225 | 3 | 11 | 353 | 38 | 368 | 9.23e-43 | 152 |
| Msa0379530 | AT1G44750.7 | 32.932 | 249 | 166 | 1 | 106 | 353 | 44 | 292 | 7.61e-41 | 145 |
| Msa0379530 | AT1G44750.5 | 32.932 | 249 | 166 | 1 | 106 | 353 | 44 | 292 | 7.61e-41 | 145 |
| Msa0379530 | AT1G44750.4 | 32.932 | 249 | 166 | 1 | 106 | 353 | 44 | 292 | 7.61e-41 | 145 |
| Msa0379530 | AT1G44750.8 | 32.932 | 249 | 166 | 1 | 106 | 353 | 44 | 292 | 7.61e-41 | 145 |
| Msa0379530 | AT1G44750.3 | 32.932 | 249 | 166 | 1 | 106 | 353 | 44 | 292 | 7.61e-41 | 145 |
| Msa0379530 | AT4G18190.1 | 32.591 | 359 | 223 | 6 | 3 | 353 | 20 | 367 | 1.99e-40 | 147 |
| Msa0379530 | AT2G24220.1 | 33.115 | 305 | 187 | 1 | 32 | 336 | 54 | 341 | 1.76e-38 | 141 |
| Msa0379530 | AT2G24220.2 | 33.007 | 306 | 188 | 1 | 31 | 336 | 71 | 359 | 1.94e-38 | 141 |
| Msa0379530 | AT4G08700.1 | 26.437 | 348 | 234 | 4 | 12 | 354 | 28 | 358 | 2.13e-35 | 132 |
| Msa0379530 | AT5G41160.1 | 26.398 | 322 | 222 | 3 | 34 | 354 | 54 | 361 | 6.84e-32 | 123 |
| Msa0379530 | AT1G19770.1 | 26.885 | 305 | 203 | 4 | 47 | 340 | 88 | 383 | 3.37e-23 | 99.8 |
| Msa0379530 | AT1G57943.2 | 26.301 | 365 | 229 | 11 | 11 | 351 | 36 | 384 | 1.69e-20 | 92.4 |
| Msa0379530 | AT1G57943.1 | 26.301 | 365 | 229 | 11 | 11 | 351 | 37 | 385 | 1.87e-20 | 92.0 |
| Msa0379530 | AT1G57990.1 | 24.722 | 360 | 237 | 10 | 11 | 351 | 33 | 377 | 1.54e-18 | 86.7 |
| Msa0379530 | AT1G57980.1 | 27.174 | 368 | 218 | 13 | 11 | 351 | 37 | 381 | 2.91e-17 | 82.8 |
| Msa0379530 | AT1G47603.1 | 27.731 | 357 | 213 | 11 | 17 | 350 | 49 | 383 | 3.43e-17 | 82.4 |
Find 97 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGGAAGCTAGAAATTT+TGG | 0.100824 | 3_1:+80717147 | Msa0379530:CDS |
| GATTGCAAACAATGACTTTA+AGG | 0.119715 | 3_1:+80714533 | Msa0379530:CDS |
| AAGTTGTTAAAGGGTATAAT+TGG | 0.217445 | 3_1:-80717657 | None:intergenic |
| TGTCACTTGTACTTTCTCTT+TGG | 0.257169 | 3_1:+80717364 | Msa0379530:CDS |
| GTCACTTGTACTTTCTCTTT+GGG | 0.266053 | 3_1:+80717365 | Msa0379530:CDS |
| CATCACTTATTCTCTTGTTA+TGG | 0.272446 | 3_1:+80714458 | Msa0379530:CDS |
| TACGGTTGGTTCTGGTGTTT+TGG | 0.295285 | 3_1:+80714293 | Msa0379530:CDS |
| AAGCTGAGATGCTATTATTA+AGG | 0.319246 | 3_1:-80714193 | None:intergenic |
| TTTAATCTCACCATAGAAAT+AGG | 0.320060 | 3_1:-80717397 | None:intergenic |
| CTCATAGATATTGATAAGTA+TGG | 0.352605 | 3_1:+80717605 | Msa0379530:three_prime_UTR |
| GCCACTCTCTTCTGTGCTAT+AGG | 0.354346 | 3_1:+80714507 | Msa0379530:CDS |
| TGGTGGATGGTGGAGGATGG+TGG | 0.364115 | 3_1:-80714029 | None:intergenic |
| TCTATAATAAAGATTGTTGT+TGG | 0.366551 | 3_1:+80717682 | Msa0379530:three_prime_UTR |
| TCCACGGCGGCCAACGTGTC+TGG | 0.372039 | 3_1:+80713923 | Msa0379530:CDS |
| GTTGCTGCTTCTGCATTGTA+TGG | 0.384050 | 3_1:+80714387 | Msa0379530:CDS |
| AATGAGCATCAAGGGGAAAC+TGG | 0.387179 | 3_1:-80713968 | None:intergenic |
| TCAAGGGGAAACTGGCGGTT+TGG | 0.389802 | 3_1:-80713960 | None:intergenic |
| ATGGAGATGGTGGTGGATGG+TGG | 0.398618 | 3_1:-80714039 | None:intergenic |
| ATTAAGGAACCAGTGGAAAC+TGG | 0.398731 | 3_1:-80714177 | None:intergenic |
| ACGTGGTTTAGAAATATAGA+TGG | 0.416127 | 3_1:+80717443 | Msa0379530:exon |
| TCTTCGCATATGGCGTTGCT+CGG | 0.418830 | 3_1:+80714151 | Msa0379530:CDS |
| TGGTGGTGGATGGTGGAGGA+TGG | 0.424033 | 3_1:-80714032 | None:intergenic |
| TTCTTCGCAGCCGCCTTCAT+CGG | 0.427701 | 3_1:+80714102 | Msa0379530:CDS |
| TGGATGGTGGAGGATGGTGG+TGG | 0.430332 | 3_1:-80714026 | None:intergenic |
| CTGCTCCGTGATTGGAATGT+AGG | 0.430513 | 3_1:+80717487 | Msa0379530:three_prime_UTR |
| TTCTGTGATGGAGATGGTGG+TGG | 0.432880 | 3_1:-80714046 | None:intergenic |
| AGTTGTTAAAGGGTATAATT+GGG | 0.436684 | 3_1:-80717656 | None:intergenic |
| CCAAAATTTCTAGCTTCCCT+TGG | 0.438019 | 3_1:-80717147 | None:intergenic |
| ACTGCCAACACTTCTGTTAG+TGG | 0.444558 | 3_1:-80717303 | None:intergenic |
| TTGTGCCTCATCGTTAGTGT+CGG | 0.457199 | 3_1:+80717257 | Msa0379530:CDS |
| GCTCGGCTTCCAGTTTCCAC+TGG | 0.458963 | 3_1:+80714168 | Msa0379530:CDS |
| GAAGAAAATAGAAGGTTTCA+TGG | 0.460569 | 3_1:-80714085 | None:intergenic |
| GGGGAGCACCGGAGGTACCT+AGG | 0.461356 | 3_1:-80713879 | None:intergenic |
| GACGACTATCTCTTCGCATA+TGG | 0.467374 | 3_1:+80714141 | Msa0379530:CDS |
| GTGGAGGATGGTGGTGGAGA+CGG | 0.467478 | 3_1:-80714020 | None:intergenic |
| TGAAATAGAGACGCATTATG+AGG | 0.471366 | 3_1:-80713900 | None:intergenic |
| GCCGGTGAGGATTCCGATGA+AGG | 0.474028 | 3_1:-80714115 | None:intergenic |
| GAGATGGTGGTGGATGGTGG+AGG | 0.481262 | 3_1:-80714036 | None:intergenic |
| TGTGCCTCATCGTTAGTGTC+GGG | 0.483652 | 3_1:+80717258 | Msa0379530:CDS |
| AGGGGAAACTGGCGGTTTGG+AGG | 0.487139 | 3_1:-80713957 | None:intergenic |
| GTGATGGAGATGGTGGTGGA+TGG | 0.491847 | 3_1:-80714042 | None:intergenic |
| TAGATGGGTCAAACTCTTGA+GGG | 0.495608 | 3_1:+80717459 | Msa0379530:exon |
| GAAACTGGCGGTTTGGAGGA+AGG | 0.498472 | 3_1:-80713953 | None:intergenic |
| GCGGCTGCGAAGAAAATAGA+AGG | 0.499053 | 3_1:-80714093 | None:intergenic |
| TGCTCCGTGATTGGAATGTA+GGG | 0.513072 | 3_1:+80717488 | Msa0379530:three_prime_UTR |
| GGGAGCACCGGAGGTACCTA+GGG | 0.520001 | 3_1:-80713878 | None:intergenic |
| TGAAATTGTAGGTGATTCCA+AGG | 0.522629 | 3_1:+80717130 | Msa0379530:intron |
| TGCGAGGGGAATGAGCATCA+AGG | 0.523525 | 3_1:-80713977 | None:intergenic |
| GAGAACACACACATGGAAGA+AGG | 0.533724 | 3_1:+80713790 | Msa0379530:exon |
| ACGAGTAGTGATCGTCCTGC+TGG | 0.534270 | 3_1:+80714324 | Msa0379530:CDS |
| TCACTTGTACTTTCTCTTTG+GGG | 0.538433 | 3_1:+80717366 | Msa0379530:CDS |
| GCCAGACACGTTGGCCGCCG+TGG | 0.541479 | 3_1:-80713924 | None:intergenic |
| ACGCATTATGAGGGGAGCAC+CGG | 0.545670 | 3_1:-80713890 | None:intergenic |
| GAAATAGAGACGCATTATGA+GGG | 0.548591 | 3_1:-80713899 | None:intergenic |
| TGGTGAGATTAAACATGCTA+AGG | 0.555926 | 3_1:+80717407 | Msa0379530:CDS |
| ATAGATGGGTCAAACTCTTG+AGG | 0.556122 | 3_1:+80717458 | Msa0379530:exon |
| TTAATAATAGCATCTCAGCT+TGG | 0.557663 | 3_1:+80714195 | Msa0379530:CDS |
| ATGTTAGCCCTAGGTACCTC+CGG | 0.565369 | 3_1:+80713871 | Msa0379530:CDS |
| TGCTATTATTAAGGAACCAG+TGG | 0.565701 | 3_1:-80714184 | None:intergenic |
| AATTGTCTCATGTTAGCCCT+AGG | 0.571570 | 3_1:+80713862 | Msa0379530:CDS |
| TTATAAACCAACTTAACCGA+AGG | 0.572401 | 3_1:-80714420 | None:intergenic |
| CACACACATGGAAGAAGGAA+AGG | 0.574939 | 3_1:+80713795 | Msa0379530:exon |
| CTACATTCCAATCACGGAGC+AGG | 0.577783 | 3_1:-80717486 | None:intergenic |
| GCGAGGGGAATGAGCATCAA+GGG | 0.578405 | 3_1:-80713976 | None:intergenic |
| GTTACCACTAACAGAAGTGT+TGG | 0.579485 | 3_1:+80717299 | Msa0379530:CDS |
| GCCTTCATCGGAATCCTCAC+CGG | 0.585533 | 3_1:+80714114 | Msa0379530:CDS |
| CGTGGTTTAGAAATATAGAT+GGG | 0.586265 | 3_1:+80717444 | Msa0379530:exon |
| TGAGACAATTTACTATCAGA+AGG | 0.586602 | 3_1:-80713849 | None:intergenic |
| AAGCACTTACTATGTTGTGT+TGG | 0.589316 | 3_1:+80717179 | Msa0379530:CDS |
| ATAACAAGAGAATAAGTGAT+GGG | 0.603082 | 3_1:-80714456 | None:intergenic |
| CATAACAAGAGAATAAGTGA+TGG | 0.603170 | 3_1:-80714457 | None:intergenic |
| CATTATGAGGGGAGCACCGG+AGG | 0.606065 | 3_1:-80713887 | None:intergenic |
| TATACCCTACATTCCAATCA+CGG | 0.608300 | 3_1:-80717492 | None:intergenic |
| ATGCGTCTCTATTTCATCCA+CGG | 0.610236 | 3_1:+80713907 | Msa0379530:CDS |
| GAAGAGATAGTCGTCAAGGC+CGG | 0.619969 | 3_1:-80714133 | None:intergenic |
| GTATGATGTATGAGATTGCG+AGG | 0.623652 | 3_1:-80713993 | None:intergenic |
| ATGCGAAGAGATAGTCGTCA+AGG | 0.632876 | 3_1:-80714137 | None:intergenic |
| TGGTTGTTAGTGCGTTAATG+TGG | 0.639944 | 3_1:+80717199 | Msa0379530:CDS |
| TATGATGTATGAGATTGCGA+GGG | 0.643247 | 3_1:-80713992 | None:intergenic |
| GTTTAGAGAGAACACACACA+TGG | 0.644169 | 3_1:+80713783 | None:intergenic |
| CAATGCAGAAGCAGCAACCG+TGG | 0.648575 | 3_1:-80714382 | None:intergenic |
| GGTGAGGATTCCGATGAAGG+CGG | 0.655496 | 3_1:-80714112 | None:intergenic |
| ACCAACCGTAAGCAAAACAA+TGG | 0.657982 | 3_1:-80714280 | None:intergenic |
| GCCTATAGCACAGAAGAGAG+TGG | 0.659041 | 3_1:-80714508 | None:intergenic |
| CGAGGGGAATGAGCATCAAG+GGG | 0.659390 | 3_1:-80713975 | None:intergenic |
| AGATGGGTCAAACTCTTGAG+GGG | 0.660235 | 3_1:+80717460 | Msa0379530:exon |
| GAAATTGTAGGTGATTCCAA+GGG | 0.661077 | 3_1:+80717131 | Msa0379530:intron |
| ACTGGCGGTTTGGAGGAAGG+CGG | 0.661208 | 3_1:-80713950 | None:intergenic |
| AAATAGAGACGCATTATGAG+GGG | 0.661247 | 3_1:-80713898 | None:intergenic |
| AGGCGGAGAGCCAGACACGT+TGG | 0.665988 | 3_1:-80713933 | None:intergenic |
| GATGGGTCAAACTCTTGAGG+GGG | 0.688539 | 3_1:+80717461 | Msa0379530:exon |
| GATAGTCGTCAAGGCCGGTG+AGG | 0.690358 | 3_1:-80714128 | None:intergenic |
| GAGCATCAAGGGGAAACTGG+CGG | 0.694601 | 3_1:-80713965 | None:intergenic |
| AATACCCGACACTAACGATG+AGG | 0.705820 | 3_1:-80717262 | None:intergenic |
| ATGATGTATGAGATTGCGAG+GGG | 0.708086 | 3_1:-80713991 | None:intergenic |
| AAGGCAGAAAAGAAGAAACG+TGG | 0.749200 | 3_1:+80717426 | Msa0379530:CDS |
| CGTCTCTATTTCATCCACGG+CGG | 0.772458 | 3_1:+80713910 | Msa0379530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTTCTCAAAATTTAT+CGG | + | chr3_1:80714785-80714804 | Msa0379530:intron | 10.0% |
| !! | AAAAAAAAAGAATAATGAAA+AGG | + | chr3_1:80715432-80715451 | Msa0379530:intron | 10.0% |
| !!! | TTTTAACAATTAATATTAAC+AGG | + | chr3_1:80715727-80715746 | Msa0379530:intron | 10.0% |
| !!! | TTTTTTAATGTAATTTTTTC+AGG | - | chr3_1:80715964-80715983 | None:intergenic | 10.0% |
| !! | TTAGATCTATAAAAATAAAA+AGG | + | chr3_1:80716110-80716129 | Msa0379530:intron | 10.0% |
| !! | AATAAATTTAATGTAACAAA+TGG | + | chr3_1:80716417-80716436 | Msa0379530:intron | 10.0% |
| !! | TAAATATTTGTTTATATTGT+TGG | + | chr3_1:80716586-80716605 | Msa0379530:intron | 10.0% |
| !! | AGAAAAAGATAATAATGAAA+AGG | + | chr3_1:80715476-80715495 | Msa0379530:intron | 15.0% |
| !! | ATAAAGTTAATAGCTTAAAT+TGG | - | chr3_1:80715705-80715724 | None:intergenic | 15.0% |
| !! | CTATAAAAATAAAAAGGAAA+TGG | + | chr3_1:80716116-80716135 | Msa0379530:intron | 15.0% |
| !!! | CTTTTCATTTTTTTTTCTTT+CGG | - | chr3_1:80716158-80716177 | None:intergenic | 15.0% |
| !!! | TAGTAAAATATGTTGTTTAA+GGG | - | chr3_1:80716519-80716538 | None:intergenic | 15.0% |
| !!! | ATAGTAAAATATGTTGTTTA+AGG | - | chr3_1:80716520-80716539 | None:intergenic | 15.0% |
| !!! | ATTAAATGTCTTACTTTTTT+AGG | + | chr3_1:80717553-80717572 | Msa0379530:three_prime_UTR | 15.0% |
| !!! | TTAAATGTCTTACTTTTTTA+GGG | + | chr3_1:80717554-80717573 | Msa0379530:three_prime_UTR | 15.0% |
| !! | TTATAGAAAAAGTTGTTAAA+GGG | - | chr3_1:80717669-80717688 | None:intergenic | 15.0% |
| !! | ATTATAGAAAAAGTTGTTAA+AGG | - | chr3_1:80717670-80717689 | None:intergenic | 15.0% |
| !!! | TATATTTAGTTTTTCTGTGA+TGG | - | chr3_1:80714061-80714080 | None:intergenic | 20.0% |
| !! | GAGAAAATAATTATAAATGC+CGG | - | chr3_1:80714776-80714795 | None:intergenic | 20.0% |
| !! | AAAAATTAACAATTATGTCC+TGG | - | chr3_1:80714954-80714973 | None:intergenic | 20.0% |
| !! | AAGTCATAAATTAAATTCAG+TGG | + | chr3_1:80715153-80715172 | Msa0379530:intron | 20.0% |
| !! | TCCAAAGATAAAATTATATG+CGG | + | chr3_1:80715371-80715390 | Msa0379530:intron | 20.0% |
| !!! | TTTTTTTTTTCTTTCCGTTA+CGG | - | chr3_1:80715421-80715440 | None:intergenic | 20.0% |
| !!! | TTCATTATTGTTTTTTGTGT+TGG | - | chr3_1:80715585-80715604 | None:intergenic | 20.0% |
| !! | CACAAAAAACAATAATGAAA+AGG | + | chr3_1:80715586-80715605 | Msa0379530:intron | 20.0% |
| !! | AGCTTCAAGTAATATAATAT+AGG | + | chr3_1:80715926-80715945 | Msa0379530:intron | 20.0% |
| !! | CGAAAGAAAAAAAAATGAAA+AGG | + | chr3_1:80716156-80716175 | Msa0379530:intron | 20.0% |
| !!! | ATGAAAAGGAAACTTTTATA+CGG | + | chr3_1:80716170-80716189 | Msa0379530:intron | 20.0% |
| !! | TTATTTGTATAGAAAGTTGA+GGG | - | chr3_1:80716376-80716395 | None:intergenic | 20.0% |
| !!! | CTATAACTTTTGAAACTTAA+AGG | - | chr3_1:80716858-80716877 | None:intergenic | 20.0% |
| !! | AAGTTTCAAAAGTTATAGAT+AGG | + | chr3_1:80716860-80716879 | Msa0379530:intron | 20.0% |
| !! | TCTATAATAAAGATTGTTGT+TGG | + | chr3_1:80717682-80717701 | Msa0379530:three_prime_UTR | 20.0% |
| ! | ATAACAAGAGAATAAGTGAT+GGG | - | chr3_1:80714459-80714478 | None:intergenic | 25.0% |
| !!! | CTTTAAGGTAAGATTATGTT+AGG | + | chr3_1:80714548-80714567 | Msa0379530:intron | 25.0% |
| !! | AGAGTTTGAATTTTACTAAG+TGG | + | chr3_1:80714847-80714866 | Msa0379530:intron | 25.0% |
| ! | TGCATCAACAAAAATGAATA+TGG | + | chr3_1:80715125-80715144 | Msa0379530:intron | 25.0% |
| ! | CGAAAGAAAACAATATACAA+AGG | + | chr3_1:80715236-80715255 | Msa0379530:intron | 25.0% |
| ! | CTAAATCTATAAAAAGGAAC+TGG | + | chr3_1:80715295-80715314 | Msa0379530:intron | 25.0% |
| !! | ACCGCATATAATTTTATCTT+TGG | - | chr3_1:80715375-80715394 | None:intergenic | 25.0% |
| ! | GGTTGAGAAATAATAAATTC+AGG | - | chr3_1:80715760-80715779 | None:intergenic | 25.0% |
| ! | ATAAATGCAGTCTAATATGA+AGG | - | chr3_1:80715781-80715800 | None:intergenic | 25.0% |
| ! | GTTATTTGTATAGAAAGTTG+AGG | - | chr3_1:80716377-80716396 | None:intergenic | 25.0% |
| !! | ATAAGTCCTTTAAGTTTCAA+AGG | - | chr3_1:80717012-80717031 | None:intergenic | 25.0% |
| ! | AAAAGAACTGTGATCAATAA+AGG | + | chr3_1:80717083-80717102 | Msa0379530:intron | 25.0% |
| !! | GATATTGGATTTGAAATTGT+AGG | + | chr3_1:80717119-80717138 | Msa0379530:intron | 25.0% |
| ! | TTTAATCTCACCATAGAAAT+AGG | - | chr3_1:80717400-80717419 | None:intergenic | 25.0% |
| !!! | TTACTTTTTTAGGGAAAGAA+GGG | + | chr3_1:80717563-80717582 | Msa0379530:three_prime_UTR | 25.0% |
| ! | CTCATAGATATTGATAAGTA+TGG | + | chr3_1:80717605-80717624 | Msa0379530:three_prime_UTR | 25.0% |
| !! | AGTTGTTAAAGGGTATAATT+GGG | - | chr3_1:80717659-80717678 | None:intergenic | 25.0% |
| !! | AAGTTGTTAAAGGGTATAAT+TGG | - | chr3_1:80717660-80717679 | None:intergenic | 25.0% |
| TGAGACAATTTACTATCAGA+AGG | - | chr3_1:80713852-80713871 | None:intergenic | 30.0% | |
| GAAGAAAATAGAAGGTTTCA+TGG | - | chr3_1:80714088-80714107 | None:intergenic | 30.0% | |
| AAGCTGAGATGCTATTATTA+AGG | - | chr3_1:80714196-80714215 | None:intergenic | 30.0% | |
| TTAATAATAGCATCTCAGCT+TGG | + | chr3_1:80714195-80714214 | Msa0379530:CDS | 30.0% | |
| TTATAAACCAACTTAACCGA+AGG | - | chr3_1:80714423-80714442 | None:intergenic | 30.0% | |
| CATAACAAGAGAATAAGTGA+TGG | - | chr3_1:80714460-80714479 | None:intergenic | 30.0% | |
| CATCACTTATTCTCTTGTTA+TGG | + | chr3_1:80714458-80714477 | Msa0379530:CDS | 30.0% | |
| GATTGCAAACAATGACTTTA+AGG | + | chr3_1:80714533-80714552 | Msa0379530:CDS | 30.0% | |
| AGGTAAGATTATGTTAGGTA+AGG | + | chr3_1:80714553-80714572 | Msa0379530:intron | 30.0% | |
| TATATGAAAACCTTGTTGCA+TGG | + | chr3_1:80714693-80714712 | Msa0379530:intron | 30.0% | |
| CACAGTAGTTGAATTTATGA+AGG | + | chr3_1:80714874-80714893 | Msa0379530:intron | 30.0% | |
| GATCCAAACCTAATCAATTA+GGG | - | chr3_1:80714929-80714948 | None:intergenic | 30.0% | |
| AGATCCAAACCTAATCAATT+AGG | - | chr3_1:80714930-80714949 | None:intergenic | 30.0% | |
| !! | TGTTTTTGCTAGACTCTAAT+CGG | + | chr3_1:80714973-80714992 | Msa0379530:intron | 30.0% |
| !! | TCTGGTTTCGATCAATTTTT+AGG | + | chr3_1:80715333-80715352 | Msa0379530:intron | 30.0% |
| TTAAAGATTTAGTCGCCTTT+GGG | - | chr3_1:80715525-80715544 | None:intergenic | 30.0% | |
| TTTAAAGATTTAGTCGCCTT+TGG | - | chr3_1:80715526-80715545 | None:intergenic | 30.0% | |
| TATAGATCTAACTACCATTG+CGG | - | chr3_1:80716101-80716120 | None:intergenic | 30.0% | |
| !! | TCAACCTAAAAGTGTTGAAA+GGG | - | chr3_1:80716334-80716353 | None:intergenic | 30.0% |
| !! | TTCAACCTAAAAGTGTTGAA+AGG | - | chr3_1:80716335-80716354 | None:intergenic | 30.0% |
| !!! | TAGAAAGTTGAGGGTATTTT+TGG | - | chr3_1:80716367-80716386 | None:intergenic | 30.0% |
| CGTTAGTACAATAAAAAGAG+CGG | + | chr3_1:80716731-80716750 | Msa0379530:intron | 30.0% | |
| TATTATTACCAGCGAAAAGA+CGG | - | chr3_1:80716777-80716796 | None:intergenic | 30.0% | |
| GTTACAAACGTGAAACTTAA+AGG | - | chr3_1:80717034-80717053 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCAA+AGG | + | chr3_1:80716878-80716897 | Msa0379530:intron | 30.0% |
| !! | CTGAAACCTTTGAAACTTAA+AGG | - | chr3_1:80716887-80716906 | None:intergenic | 30.0% |
| AAGTTTCAAAGGTTTCAGAT+AGG | + | chr3_1:80716889-80716908 | Msa0379530:intron | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | - | chr3_1:80716916-80716935 | None:intergenic | 30.0% | |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | - | chr3_1:80716972-80716991 | None:intergenic | 30.0% |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr3_1:80716974-80716993 | Msa0379530:intron | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | chr3_1:80716983-80717002 | None:intergenic | 30.0% |
| AAGTTTCAAAGGTTACAGAT+AGG | - | chr3_1:80717001-80717020 | None:intergenic | 30.0% | |
| !! | CTGTAACCTTTGAAACTTAA+AGG | + | chr3_1:80717003-80717022 | Msa0379530:intron | 30.0% |
| GTTACAAACGTGAAACTTAA+AGG | + | chr3_1:80717034-80717053 | Msa0379530:intron | 30.0% | |
| GGAACACTAATATGAGATAT+TGG | + | chr3_1:80717104-80717123 | Msa0379530:intron | 30.0% | |
| AAAATTCCAAGCAGAAAAAG+CGG | + | chr3_1:80717341-80717360 | Msa0379530:CDS | 30.0% | |
| ACGTGGTTTAGAAATATAGA+TGG | + | chr3_1:80717443-80717462 | Msa0379530:exon | 30.0% | |
| CGTGGTTTAGAAATATAGAT+GGG | + | chr3_1:80717444-80717463 | Msa0379530:exon | 30.0% | |
| !!! | CTTACTTTTTTAGGGAAAGA+AGG | + | chr3_1:80717562-80717581 | Msa0379530:three_prime_UTR | 30.0% |
| AAATAGAGACGCATTATGAG+GGG | - | chr3_1:80713901-80713920 | None:intergenic | 35.0% | |
| GAAATAGAGACGCATTATGA+GGG | - | chr3_1:80713902-80713921 | None:intergenic | 35.0% | |
| TGAAATAGAGACGCATTATG+AGG | - | chr3_1:80713903-80713922 | None:intergenic | 35.0% | |
| TATGATGTATGAGATTGCGA+GGG | - | chr3_1:80713995-80714014 | None:intergenic | 35.0% | |
| !! | TAGTTTTTCTGTGATGGAGA+TGG | - | chr3_1:80714055-80714074 | None:intergenic | 35.0% |
| TGCTATTATTAAGGAACCAG+TGG | - | chr3_1:80714187-80714206 | None:intergenic | 35.0% | |
| AAGAAGAAAAGCGAAAAACG+CGG | - | chr3_1:80714226-80714245 | None:intergenic | 35.0% | |
| !! | AAACGCCATTGTTTTGCTTA+CGG | + | chr3_1:80714275-80714294 | Msa0379530:CDS | 35.0% |
| !!! | TGCGATTAGTTTTTCAACCA+CGG | + | chr3_1:80714365-80714384 | Msa0379530:CDS | 35.0% |
| !!! | GTATGGATTTGTTTTGCCTT+CGG | + | chr3_1:80714404-80714423 | Msa0379530:CDS | 35.0% |
| ACATGACGCAAGTCATATAT+CGG | - | chr3_1:80714742-80714761 | None:intergenic | 35.0% | |
| TTATGAAGGAGAATCTCTTC+TGG | + | chr3_1:80714888-80714907 | Msa0379530:intron | 35.0% | |
| GATTCAGACCCTAATTGATT+AGG | + | chr3_1:80714918-80714937 | Msa0379530:intron | 35.0% | |
| AGACCCTAATTGATTAGGTT+TGG | + | chr3_1:80714923-80714942 | Msa0379530:intron | 35.0% | |
| ! | GTTTTTGCTAGACTCTAATC+GGG | + | chr3_1:80714974-80714993 | Msa0379530:intron | 35.0% |
| TCAGTGGAACTAATCAAAAG+TGG | + | chr3_1:80715169-80715188 | Msa0379530:intron | 35.0% | |
| !! | TATGCGGTTCAGTTTGATTT+TGG | + | chr3_1:80715387-80715406 | Msa0379530:intron | 35.0% |
| ! | TTTTGGATGGAATTCCGTAA+CGG | + | chr3_1:80715404-80715423 | Msa0379530:intron | 35.0% |
| TGAGAAAAAGCTAATCCCAA+AGG | + | chr3_1:80715507-80715526 | Msa0379530:intron | 35.0% | |
| ! | TTACCCCTTTCAACACTTTT+AGG | + | chr3_1:80716327-80716346 | Msa0379530:intron | 35.0% |
| !! | CAACCTAAAAGTGTTGAAAG+GGG | - | chr3_1:80716333-80716352 | None:intergenic | 35.0% |
| !!! | AAGTTGAGGGTATTTTTGGA+AGG | - | chr3_1:80716363-80716382 | None:intergenic | 35.0% |
| ATTATTACCAGCGAAAAGAC+GGG | - | chr3_1:80716776-80716795 | None:intergenic | 35.0% | |
| CGCTGGTAATAATAACGAAA+AGG | + | chr3_1:80716783-80716802 | Msa0379530:intron | 35.0% | |
| !! | GTTTCGAGTTTGTTTCAGAT+AGG | + | chr3_1:80716920-80716939 | Msa0379530:intron | 35.0% |
| !! | GATCACAGTTCTTTTTCGTT+AGG | - | chr3_1:80717078-80717097 | None:intergenic | 35.0% |
| TGAAATTGTAGGTGATTCCA+AGG | + | chr3_1:80717130-80717149 | Msa0379530:intron | 35.0% | |
| GAAATTGTAGGTGATTCCAA+GGG | + | chr3_1:80717131-80717150 | Msa0379530:intron | 35.0% | |
| ! | CAAGGGAAGCTAGAAATTTT+GGG | + | chr3_1:80717148-80717167 | Msa0379530:CDS | 35.0% |
| AAGCACTTACTATGTTGTGT+TGG | + | chr3_1:80717179-80717198 | Msa0379530:CDS | 35.0% | |
| ! | TGTCACTTGTACTTTCTCTT+TGG | + | chr3_1:80717364-80717383 | Msa0379530:CDS | 35.0% |
| GTCACTTGTACTTTCTCTTT+GGG | + | chr3_1:80717365-80717384 | Msa0379530:CDS | 35.0% | |
| TCACTTGTACTTTCTCTTTG+GGG | + | chr3_1:80717366-80717385 | Msa0379530:CDS | 35.0% | |
| !!! | GGTTTTGTGTCCTATTTCTA+TGG | + | chr3_1:80717387-80717406 | Msa0379530:CDS | 35.0% |
| TGGTGAGATTAAACATGCTA+AGG | + | chr3_1:80717407-80717426 | Msa0379530:CDS | 35.0% | |
| TATACCCTACATTCCAATCA+CGG | - | chr3_1:80717495-80717514 | None:intergenic | 35.0% | |
| AATTGTCTCATGTTAGCCCT+AGG | + | chr3_1:80713862-80713881 | Msa0379530:CDS | 40.0% | |
| ATGCGTCTCTATTTCATCCA+CGG | + | chr3_1:80713907-80713926 | Msa0379530:CDS | 40.0% | |
| ATGATGTATGAGATTGCGAG+GGG | - | chr3_1:80713994-80714013 | None:intergenic | 40.0% | |
| GTATGATGTATGAGATTGCG+AGG | - | chr3_1:80713996-80714015 | None:intergenic | 40.0% | |
| !! | TTTTTCTGTGATGGAGATGG+TGG | - | chr3_1:80714052-80714071 | None:intergenic | 40.0% |
| ATTAAGGAACCAGTGGAAAC+TGG | - | chr3_1:80714180-80714199 | None:intergenic | 40.0% | |
| ACCAACCGTAAGCAAAACAA+TGG | - | chr3_1:80714283-80714302 | None:intergenic | 40.0% | |
| ! | TGTTTTGCCTTCGGTTAAGT+TGG | + | chr3_1:80714413-80714432 | Msa0379530:CDS | 40.0% |
| TGATTAGGTTTGGATCTTCC+AGG | + | chr3_1:80714933-80714952 | Msa0379530:intron | 40.0% | |
| GGGCGGCTAAATCTATAAAA+AGG | + | chr3_1:80715289-80715308 | Msa0379530:intron | 40.0% | |
| CTATAAAAAGGAACTGGCAG+TGG | + | chr3_1:80715301-80715320 | Msa0379530:intron | 40.0% | |
| !! | CGGTTCAGTTTGATTTTGGA+TGG | + | chr3_1:80715391-80715410 | Msa0379530:intron | 40.0% |
| !! | TGTGTTGTCATGTGCTACTT+CGG | + | chr3_1:80715624-80715643 | Msa0379530:intron | 40.0% |
| !! | GTTAGTATCGGTTTCTTGGT+GGG | - | chr3_1:80716079-80716098 | None:intergenic | 40.0% |
| ACTACCATTGCGGTTAGTAT+CGG | - | chr3_1:80716091-80716110 | None:intergenic | 40.0% | |
| !! | CTTAACGGAGGTTGATAGAA+AGG | - | chr3_1:80716947-80716966 | None:intergenic | 40.0% |
| CTTTCTATCAACCTCCGTTA+AGG | + | chr3_1:80716945-80716964 | Msa0379530:intron | 40.0% | |
| GGTTTCAGATAGGTCCTTAA+CGG | - | chr3_1:80716962-80716981 | None:intergenic | 40.0% | |
| !! | CCAAAATTTCTAGCTTCCCT+TGG | - | chr3_1:80717150-80717169 | None:intergenic | 40.0% |
| ! | CCAAGGGAAGCTAGAAATTT+TGG | + | chr3_1:80717147-80717166 | Msa0379530:CDS | 40.0% |
| ! | GAAGCTAGAAATTTTGGGCT+AGG | + | chr3_1:80717153-80717172 | Msa0379530:CDS | 40.0% |
| TGGTTGTTAGTGCGTTAATG+TGG | + | chr3_1:80717199-80717218 | Msa0379530:CDS | 40.0% | |
| ! | AATGTGGCAAGCGTTTTTCT+TGG | + | chr3_1:80717215-80717234 | Msa0379530:CDS | 40.0% |
| ! | ATGTGGCAAGCGTTTTTCTT+GGG | + | chr3_1:80717216-80717235 | Msa0379530:CDS | 40.0% |
| ! | CGTTTTTCTTGGGAGCTATT+GGG | + | chr3_1:80717226-80717245 | Msa0379530:CDS | 40.0% |
| ! | GTTTTTCTTGGGAGCTATTG+GGG | + | chr3_1:80717227-80717246 | Msa0379530:CDS | 40.0% |
| ! | GTTACCACTAACAGAAGTGT+TGG | + | chr3_1:80717299-80717318 | Msa0379530:CDS | 40.0% |
| AAGGCAGAAAAGAAGAAACG+TGG | + | chr3_1:80717426-80717445 | Msa0379530:CDS | 40.0% | |
| ATAGATGGGTCAAACTCTTG+AGG | + | chr3_1:80717458-80717477 | Msa0379530:exon | 40.0% | |
| TAGATGGGTCAAACTCTTGA+GGG | + | chr3_1:80717459-80717478 | Msa0379530:exon | 40.0% | |
| GAGAACACACACATGGAAGA+AGG | + | chr3_1:80713790-80713809 | Msa0379530:exon | 45.0% | |
| CACACACATGGAAGAAGGAA+AGG | + | chr3_1:80713795-80713814 | Msa0379530:exon | 45.0% | |
| AATGAGCATCAAGGGGAAAC+TGG | - | chr3_1:80713971-80713990 | None:intergenic | 45.0% | |
| ATGCGAAGAGATAGTCGTCA+AGG | - | chr3_1:80714140-80714159 | None:intergenic | 45.0% | |
| GACGACTATCTCTTCGCATA+TGG | + | chr3_1:80714141-80714160 | Msa0379530:CDS | 45.0% | |
| !! | GCCATTGTTTTGCTTACGGT+TGG | + | chr3_1:80714279-80714298 | Msa0379530:CDS | 45.0% |
| !! | GTTTTGCTTACGGTTGGTTC+TGG | + | chr3_1:80714285-80714304 | Msa0379530:CDS | 45.0% |
| !!! | TACGGTTGGTTCTGGTGTTT+TGG | + | chr3_1:80714293-80714312 | Msa0379530:CDS | 45.0% |
| ! | TGTTTTGCAGAAACACCAGC+AGG | - | chr3_1:80714342-80714361 | None:intergenic | 45.0% |
| ! | GTTGCTGCTTCTGCATTGTA+TGG | + | chr3_1:80714387-80714406 | Msa0379530:CDS | 45.0% |
| !! | TCAGAAGTGTCCATGCAACA+AGG | - | chr3_1:80714706-80714725 | None:intergenic | 45.0% |
| GCATGGACACTTCTGATTGA+AGG | + | chr3_1:80714710-80714729 | Msa0379530:intron | 45.0% | |
| TATAGATTTAGCCGCCCTTG+CGG | - | chr3_1:80715286-80715305 | None:intergenic | 45.0% | |
| !! | GGTTAGTATCGGTTTCTTGG+TGG | - | chr3_1:80716080-80716099 | None:intergenic | 45.0% |
| !! | TGCGGTTAGTATCGGTTTCT+TGG | - | chr3_1:80716083-80716102 | None:intergenic | 45.0% |
| GAAACCGATACTAACCGCAA+TGG | + | chr3_1:80716084-80716103 | Msa0379530:intron | 45.0% | |
| AAAAGGCCAAATACCTCCCT+GGG | + | chr3_1:80716800-80716819 | Msa0379530:intron | 45.0% | |
| CGTGAAACTTAAAGGACCCA+GGG | - | chr3_1:80717042-80717061 | None:intergenic | 45.0% | |
| ACGTGAAACTTAAAGGACCC+AGG | - | chr3_1:80717041-80717060 | None:intergenic | 45.0% | |
| TTCAGATAGGTCCTTAACGG+AGG | - | chr3_1:80716959-80716978 | None:intergenic | 45.0% | |
| GAAACTTAAAGGACCCAGAG+AGG | + | chr3_1:80717045-80717064 | Msa0379530:intron | 45.0% | |
| !! | AAAGGACCCAGAGAGGTATT+TGG | + | chr3_1:80717052-80717071 | Msa0379530:intron | 45.0% |
| GTTAGGCCAAATACCTCTCT+GGG | - | chr3_1:80717061-80717080 | None:intergenic | 45.0% | |
| ! | GCGTTTTTCTTGGGAGCTAT+TGG | + | chr3_1:80717225-80717244 | Msa0379530:CDS | 45.0% |
| TTGTGCCTCATCGTTAGTGT+CGG | + | chr3_1:80717257-80717276 | Msa0379530:CDS | 45.0% | |
| AATACCCGACACTAACGATG+AGG | - | chr3_1:80717265-80717284 | None:intergenic | 45.0% | |
| ACTGCCAACACTTCTGTTAG+TGG | - | chr3_1:80717306-80717325 | None:intergenic | 45.0% | |
| AGATGGGTCAAACTCTTGAG+GGG | + | chr3_1:80717460-80717479 | Msa0379530:exon | 45.0% | |
| TGCTCCGTGATTGGAATGTA+GGG | + | chr3_1:80717488-80717507 | Msa0379530:three_prime_UTR | 45.0% | |
| !!! | ATCTTTAAAAAAAAAAAATA+AGG | + | chr3_1:80715537-80715556 | Msa0379530:intron | 5.0% |
| ATGTTAGCCCTAGGTACCTC+CGG | + | chr3_1:80713871-80713890 | Msa0379530:CDS | 50.0% | |
| CGTCTCTATTTCATCCACGG+CGG | + | chr3_1:80713910-80713929 | Msa0379530:CDS | 50.0% | |
| ! | TTCTGTGATGGAGATGGTGG+TGG | - | chr3_1:80714049-80714068 | None:intergenic | 50.0% |
| GCGGCTGCGAAGAAAATAGA+AGG | - | chr3_1:80714096-80714115 | None:intergenic | 50.0% | |
| GAAGAGATAGTCGTCAAGGC+CGG | - | chr3_1:80714136-80714155 | None:intergenic | 50.0% | |
| TCTTCGCATATGGCGTTGCT+CGG | + | chr3_1:80714151-80714170 | Msa0379530:CDS | 50.0% | |
| GCCACTCTCTTCTGTGCTAT+AGG | + | chr3_1:80714507-80714526 | Msa0379530:CDS | 50.0% | |
| GCCTATAGCACAGAAGAGAG+TGG | - | chr3_1:80714511-80714530 | None:intergenic | 50.0% | |
| CGTCATGTTCGACACAACAC+CGG | + | chr3_1:80714754-80714773 | Msa0379530:intron | 50.0% | |
| AGAAACTTGTCCTACCCGCA+AGG | + | chr3_1:80715268-80715287 | Msa0379530:intron | 50.0% | |
| GAAACTTGTCCTACCCGCAA+GGG | + | chr3_1:80715269-80715288 | Msa0379530:intron | 50.0% | |
| ATAGATTTAGCCGCCCTTGC+GGG | - | chr3_1:80715285-80715304 | None:intergenic | 50.0% | |
| GAAAAGGCCAAATACCTCCC+TGG | + | chr3_1:80716799-80716818 | Msa0379530:intron | 50.0% | |
| !! | AAAGGACCCAGGGAGGTATT+TGG | - | chr3_1:80716809-80716828 | None:intergenic | 50.0% |
| GAAACTTAAAGGACCCAGGG+AGG | - | chr3_1:80716816-80716835 | None:intergenic | 50.0% | |
| CGTTAGGCCAAATACCTCTC+TGG | - | chr3_1:80717062-80717081 | None:intergenic | 50.0% | |
| TGTGCCTCATCGTTAGTGTC+GGG | + | chr3_1:80717258-80717277 | Msa0379530:CDS | 50.0% | |
| !!! | GTGACACCGCTTTTTCTGCT+TGG | - | chr3_1:80717350-80717369 | None:intergenic | 50.0% |
| GATGGGTCAAACTCTTGAGG+GGG | + | chr3_1:80717461-80717480 | Msa0379530:exon | 50.0% | |
| CTACATTCCAATCACGGAGC+AGG | - | chr3_1:80717489-80717508 | None:intergenic | 50.0% | |
| CTGCTCCGTGATTGGAATGT+AGG | + | chr3_1:80717487-80717506 | Msa0379530:three_prime_UTR | 50.0% | |
| ! | ACGCATTATGAGGGGAGCAC+CGG | - | chr3_1:80713893-80713912 | None:intergenic | 55.0% |
| ! | GAAACTGGCGGTTTGGAGGA+AGG | - | chr3_1:80713956-80713975 | None:intergenic | 55.0% |
| TCAAGGGGAAACTGGCGGTT+TGG | - | chr3_1:80713963-80713982 | None:intergenic | 55.0% | |
| GAGCATCAAGGGGAAACTGG+CGG | - | chr3_1:80713968-80713987 | None:intergenic | 55.0% | |
| CGAGGGGAATGAGCATCAAG+GGG | - | chr3_1:80713978-80713997 | None:intergenic | 55.0% | |
| GCGAGGGGAATGAGCATCAA+GGG | - | chr3_1:80713979-80713998 | None:intergenic | 55.0% | |
| TGCGAGGGGAATGAGCATCA+AGG | - | chr3_1:80713980-80713999 | None:intergenic | 55.0% | |
| !! | ATGGAGATGGTGGTGGATGG+TGG | - | chr3_1:80714042-80714061 | None:intergenic | 55.0% |
| !! | GTGATGGAGATGGTGGTGGA+TGG | - | chr3_1:80714045-80714064 | None:intergenic | 55.0% |
| TTCTTCGCAGCCGCCTTCAT+CGG | + | chr3_1:80714102-80714121 | Msa0379530:CDS | 55.0% | |
| GGTGAGGATTCCGATGAAGG+CGG | - | chr3_1:80714115-80714134 | None:intergenic | 55.0% | |
| GCCTTCATCGGAATCCTCAC+CGG | + | chr3_1:80714114-80714133 | Msa0379530:CDS | 55.0% | |
| ACGAGTAGTGATCGTCCTGC+TGG | + | chr3_1:80714324-80714343 | Msa0379530:CDS | 55.0% | |
| CAATGCAGAAGCAGCAACCG+TGG | - | chr3_1:80714385-80714404 | None:intergenic | 55.0% | |
| GGAACTGGCAGTGGTGTTCA+CGG | + | chr3_1:80715310-80715329 | Msa0379530:intron | 55.0% | |
| !! | CATTATGAGGGGAGCACCGG+AGG | - | chr3_1:80713890-80713909 | None:intergenic | 60.0% |
| ! | ACTGGCGGTTTGGAGGAAGG+CGG | - | chr3_1:80713953-80713972 | None:intergenic | 60.0% |
| ! | AGGGGAAACTGGCGGTTTGG+AGG | - | chr3_1:80713960-80713979 | None:intergenic | 60.0% |
| !! | GTGGAGGATGGTGGTGGAGA+CGG | - | chr3_1:80714023-80714042 | None:intergenic | 60.0% |
| !! | TGGATGGTGGAGGATGGTGG+TGG | - | chr3_1:80714029-80714048 | None:intergenic | 60.0% |
| !! | TGGTGGATGGTGGAGGATGG+TGG | - | chr3_1:80714032-80714051 | None:intergenic | 60.0% |
| !! | TGGTGGTGGATGGTGGAGGA+TGG | - | chr3_1:80714035-80714054 | None:intergenic | 60.0% |
| !! | GAGATGGTGGTGGATGGTGG+AGG | - | chr3_1:80714039-80714058 | None:intergenic | 60.0% |
| GCCGGTGAGGATTCCGATGA+AGG | - | chr3_1:80714118-80714137 | None:intergenic | 60.0% | |
| GATAGTCGTCAAGGCCGGTG+AGG | - | chr3_1:80714131-80714150 | None:intergenic | 60.0% | |
| GCTCGGCTTCCAGTTTCCAC+TGG | + | chr3_1:80714168-80714187 | Msa0379530:CDS | 60.0% | |
| ACTTGTCCTACCCGCAAGGG+CGG | + | chr3_1:80715272-80715291 | Msa0379530:intron | 60.0% | |
| ATTTAGCCGCCCTTGCGGGT+AGG | - | chr3_1:80715281-80715300 | None:intergenic | 60.0% | |
| TGGCAGTGGTGTTCACGGTC+TGG | + | chr3_1:80715315-80715334 | Msa0379530:intron | 60.0% | |
| ! | GTGAGTGCCCGTCTTTTCGC+TGG | + | chr3_1:80716766-80716785 | Msa0379530:intron | 60.0% |
| !! | GGGAGCACCGGAGGTACCTA+GGG | - | chr3_1:80713881-80713900 | None:intergenic | 65.0% |
| AGGCGGAGAGCCAGACACGT+TGG | - | chr3_1:80713936-80713955 | None:intergenic | 65.0% | |
| !! | GGGGGTACCTGCTCCGTGAT+TGG | + | chr3_1:80717479-80717498 | Msa0379530:three_prime_UTR | 65.0% |
| !! | GGGGAGCACCGGAGGTACCT+AGG | - | chr3_1:80713882-80713901 | None:intergenic | 70.0% |
| TCCACGGCGGCCAACGTGTC+TGG | + | chr3_1:80713923-80713942 | Msa0379530:CDS | 70.0% | |
| GCCAGACACGTTGGCCGCCG+TGG | - | chr3_1:80713927-80713946 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 80713787 | 80717716 | 80713787 | ID=Msa0379530;Name=Msa0379530 |
| chr3_1 | mRNA | 80713787 | 80717716 | 80713787 | ID=Msa0379530-mRNA-1;Parent=Msa0379530;Name=Msa0379530-mRNA-1;_AED=0.29;_eAED=0.29;_QI=15|1|1|1|1|1|2|255|357 |
| chr3_1 | exon | 80713787 | 80714554 | 80713787 | ID=Msa0379530-mRNA-1:exon:20214;Parent=Msa0379530-mRNA-1 |
| chr3_1 | exon | 80717141 | 80717716 | 80717141 | ID=Msa0379530-mRNA-1:exon:20215;Parent=Msa0379530-mRNA-1 |
| chr3_1 | five_prime_UTR | 80713787 | 80713801 | 80713787 | ID=Msa0379530-mRNA-1:five_prime_utr;Parent=Msa0379530-mRNA-1 |
| chr3_1 | CDS | 80713802 | 80714554 | 80713802 | ID=Msa0379530-mRNA-1:cds;Parent=Msa0379530-mRNA-1 |
| chr3_1 | CDS | 80717141 | 80717461 | 80717141 | ID=Msa0379530-mRNA-1:cds;Parent=Msa0379530-mRNA-1 |
| chr3_1 | three_prime_UTR | 80717462 | 80717716 | 80717462 | ID=Msa0379530-mRNA-1:three_prime_utr;Parent=Msa0379530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
