AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1018210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018210 MtrunA17_Chr8g0381971 91.958 286 20 1 1 286 1 283 0.0 521
Msa1018210 MtrunA17_Chr5g0415341 39.179 268 137 8 13 265 10 266 1.41e-52 174
Msa1018210 MtrunA17_Chr4g0058901 27.899 276 164 10 13 265 12 275 1.98e-23 97.8
Msa1018210 MtrunA17_Chr4g0069121 27.559 254 159 8 24 266 25 264 6.72e-22 93.2
Msa1018210 MtrunA17_Chr4g0075211 27.574 272 155 11 25 272 30 283 1.31e-21 93.2
Msa1018210 MtrunA17_Chr2g0288891 28.148 270 150 12 28 272 19 269 4.53e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1018210 AT1G10380.1 38.956 249 131 6 32 265 28 270 2.84e-43 150
Msa1018210 AT1G10380.2 38.956 249 131 6 32 265 28 270 6.18e-43 149
Msa1018210 AT1G11915.1 28.674 279 158 13 7 258 1 265 4.42e-21 92.0
Msa1018210 AT3G17350.2 29.134 254 149 10 33 268 31 271 3.48e-19 85.9
Msa1018210 AT3G17350.1 28.980 245 144 9 33 260 31 262 5.62e-18 82.8
Msa1018210 AT5G50290.1 26.357 258 154 11 32 265 21 266 1.25e-15 76.3

Find 115 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAGTGGAGGAAGATATT+TGG 0.258075 7_1:-38135736 None:intergenic
CGGGGAACCTCGACGGCAAC+GGG 0.267401 7_1:+38135903 Msa1018210:CDS
GTGTATGAAATGGAGGTTAT+AGG 0.283646 7_1:-38135620 None:intergenic
CCTGCGTATGCCCGAGCTTT+GGG 0.314040 7_1:-38137270 None:intergenic
CCCTGCGTATGCCCGAGCTT+TGG 0.316582 7_1:-38137271 None:intergenic
GCTCGGGCATACGCAGGGTC+TGG 0.339031 7_1:+38137276 Msa1018210:three_prime_UTR
ATACAAGTCAAGTATCCTTT+TGG 0.355121 7_1:+38135494 Msa1018210:CDS
TTTGATGTGCATGTTATGTA+TGG 0.360995 7_1:-38135551 None:intergenic
CTCACAACTAGTACATTTAG+TGG 0.392056 7_1:-38136062 None:intergenic
ACACAAACAAATCCACTTCC+TGG 0.398611 7_1:-38136115 None:intergenic
ATCAAAACCAGGATTTCCTT+TGG 0.418071 7_1:+38136182 Msa1018210:CDS
GATCGTAATTAGAGCAATCA+AGG 0.418096 7_1:-38136162 None:intergenic
GTTATGTATGGGTTGAATAG+TGG 0.421768 7_1:-38135539 None:intergenic
GAATGTCTGGAGTTCCATCT+TGG 0.421862 7_1:+38136997 Msa1018210:CDS
GTTAAGTCTATGCCAAAGTT+TGG 0.422132 7_1:-38135704 None:intergenic
GATCCTACTCATTGGGTTTG+TGG 0.422171 7_1:+38135995 Msa1018210:CDS
TCAAAACCAGGATTTCCTTT+GGG 0.424220 7_1:+38136183 Msa1018210:CDS
TTTGTTTGTGTTTGTAAAGG+TGG 0.424363 7_1:+38136127 Msa1018210:CDS
TGTATGAAATGGAGGTTATA+GGG 0.425846 7_1:-38135619 None:intergenic
CCCTACCGATCCTACTCATT+GGG 0.428780 7_1:+38135988 Msa1018210:CDS
AGAGATAGCAATACACCAAA+AGG 0.431333 7_1:-38137411 None:intergenic
GGCAGTCAGTGCCCAAAGCT+CGG 0.436153 7_1:+38137259 Msa1018210:three_prime_UTR
CCGGGGAACCTCGACGGCAA+CGG 0.439474 7_1:+38135902 Msa1018210:CDS
TATACACAACATGTGTTAGT+AGG 0.444066 7_1:-38135875 None:intergenic
TTTGGCACAGGTCCTGGTTG+CGG 0.445245 7_1:+38135512 Msa1018210:CDS
CTCGGGCATACGCAGGGTCT+GGG 0.450491 7_1:+38137277 Msa1018210:three_prime_UTR
TATGAACAGTTGGGAATGTC+TGG 0.453180 7_1:+38136984 Msa1018210:intron
ACCCTACCGATCCTACTCAT+TGG 0.464490 7_1:+38135987 Msa1018210:CDS
GAGATAGCAATACACCAAAA+GGG 0.467742 7_1:-38137410 None:intergenic
CAGAGTCCCAAAGGAAATCC+TGG 0.467751 7_1:-38136189 None:intergenic
ATGCAAACCTCACCAAACTT+TGG 0.468525 7_1:+38135692 Msa1018210:CDS
TACATAACATGCACATCAAA+CGG 0.472131 7_1:+38135554 Msa1018210:CDS
TGGGAAATGATCTCACCATT+TGG 0.475530 7_1:+38137296 Msa1018210:three_prime_UTR
AAGTTGAGGAGGGTGGAAAG+AGG 0.482013 7_1:-38135401 None:intergenic
TAATCGGAGGATAATGCTGC+TGG 0.482178 7_1:+38137043 Msa1018210:exon
GTCTGGAGTTCCATCTTGGC+TGG 0.482605 7_1:+38137001 Msa1018210:CDS
GCAGTCAGTGCCCAAAGCTC+GGG 0.483669 7_1:+38137260 Msa1018210:three_prime_UTR
CCCAAAGCTCGGGCATACGC+AGG 0.486844 7_1:+38137270 Msa1018210:three_prime_UTR
AACAATACACTAGACTTCAT+AGG 0.495200 7_1:-38137196 None:intergenic
CACATGTTGTGTATACTCAC+CGG 0.497181 7_1:+38135883 Msa1018210:CDS
ATCAAAAGAAGTGTCACAAA+TGG 0.498238 7_1:-38135789 None:intergenic
TACTCATTGGGTTTGTGGCG+TGG 0.499146 7_1:+38136000 Msa1018210:CDS
GGATCATGAAGAAGTTGAGG+AGG 0.499775 7_1:-38135412 None:intergenic
TATTCAACATCAATATGTAA+TGG 0.500190 7_1:-38137465 None:intergenic
AGTAGTAGTGGTAGTGCCAT+TGG 0.501269 7_1:-38135374 None:intergenic
GGAGGATCATGAAGAAGTTG+AGG 0.505398 7_1:-38135415 None:intergenic
GAAAGAGGTGGTAGTAGTAG+TGG 0.510292 7_1:-38135386 None:intergenic
GTTGTGTACAATACACCAAA+TGG 0.517237 7_1:-38137311 None:intergenic
CAACCAGGACCTGTGCCAAA+AGG 0.520035 7_1:-38135509 None:intergenic
AGTGGAAGTGGTGTATGAAA+TGG 0.521135 7_1:-38135630 None:intergenic
GAAAATGATACCAGCCAAGA+TGG 0.521207 7_1:-38137011 None:intergenic
GCAAGAGAGGAGGATGAAAG+TGG 0.526113 7_1:-38135750 None:intergenic
CCGTTGCCGTCGAGGTTCCC+CGG 0.529751 7_1:-38135902 None:intergenic
AATAGTGGGGATCCGCAACC+AGG 0.530035 7_1:-38135524 None:intergenic
CTCTAATTACGATCAAAACC+AGG 0.530696 7_1:+38136171 Msa1018210:CDS
GGATACGCTCCTCCAGGAAG+TGG 0.534984 7_1:+38136103 Msa1018210:CDS
TACACTAGACTTCATAGGAA+TGG 0.540053 7_1:-38137191 None:intergenic
CATGAAGAAGTTGAGGAGGG+TGG 0.540295 7_1:-38135408 None:intergenic
GGATTTGTTTGTGTTTGTAA+AGG 0.540887 7_1:+38136124 Msa1018210:CDS
TGTGAGTATGAGAGTGGAAG+TGG 0.545933 7_1:-38135642 None:intergenic
ACATGTTGTGTATACTCACC+GGG 0.550531 7_1:+38135884 Msa1018210:CDS
GAGAGTAGTGGTGGTGTGTG+TGG 0.551922 7_1:+38136082 Msa1018210:CDS
TTGAGGAGGGTGGAAAGAGG+TGG 0.552015 7_1:-38135398 None:intergenic
TGCCCTCAAGTAGTCTCACT+TGG 0.552797 7_1:+38135836 Msa1018210:CDS
CATTATCCTCCGATTACACT+AGG 0.553212 7_1:-38137036 None:intergenic
GGCAGTGCAAGTAGACATGT+AGG 0.553764 7_1:-38135669 None:intergenic
TTATGTATGGGTTGAATAGT+GGG 0.557969 7_1:-38135538 None:intergenic
ACAAATTTATCTTTGCGTCA+AGG 0.558019 7_1:+38137383 Msa1018210:three_prime_UTR
TCAAGTCCCCGTTGCCGTCG+AGG 0.567153 7_1:-38135910 None:intergenic
GTCTATGCCAAAGTTTGGTG+AGG 0.568396 7_1:-38135699 None:intergenic
GGGTGGTGTGAGTATGAGAG+TGG 0.568455 7_1:-38135648 None:intergenic
GGAAGTGGTGTATGAAATGG+AGG 0.572115 7_1:-38135627 None:intergenic
GTGTGTGGATACGCTCCTCC+AGG 0.572268 7_1:+38136097 Msa1018210:CDS
ACCCAATGAGTAGGATCGGT+AGG 0.577418 7_1:-38135989 None:intergenic
CTGTTGGTAGAGATGCTAAG+AGG 0.579340 7_1:-38135436 None:intergenic
GTAATTAGAGCAATCAAGGC+TGG 0.584195 7_1:-38136158 None:intergenic
AGAGAGGAGGATGAAAGTGG+AGG 0.585943 7_1:-38135747 None:intergenic
TGATTGTAGTAGTTATACTT+CGG 0.586867 7_1:+38135946 Msa1018210:CDS
GTGGAGGAAGATATTTGGAA+TGG 0.589220 7_1:-38135731 None:intergenic
CACACTGGTGTTGAGGCTGT+TGG 0.589421 7_1:-38135452 None:intergenic
AAAGTTTGGTGAGGTTTGCA+TGG 0.589595 7_1:-38135690 None:intergenic
TACTCACCGGGGAACCTCGA+CGG 0.589903 7_1:+38135896 Msa1018210:CDS
GTCATGGCACACTGGTGTTG+AGG 0.591700 7_1:-38135459 None:intergenic
TTGATGTGCATGTTATGTAT+GGG 0.591875 7_1:-38135550 None:intergenic
TACCAAGTGAGACTACTTGA+GGG 0.596440 7_1:-38135838 None:intergenic
ATACCAAGTGAGACTACTTG+AGG 0.598463 7_1:-38135839 None:intergenic
GAGGAGATACAGAGTCCCAA+AGG 0.600882 7_1:-38136198 None:intergenic
GATCATGAAGAAGTTGAGGA+GGG 0.601845 7_1:-38135411 None:intergenic
AGATAGCAATACACCAAAAG+GGG 0.603408 7_1:-38137409 None:intergenic
GAGGAAACAAGCAAAGCCAA+TGG 0.604727 7_1:+38135358 Msa1018210:exon
ACAAACCCAATGAGTAGGAT+CGG 0.610699 7_1:-38135993 None:intergenic
CCAAAGCTCGGGCATACGCA+GGG 0.612253 7_1:+38137271 Msa1018210:three_prime_UTR
CCCAATGAGTAGGATCGGTA+GGG 0.618650 7_1:-38135988 None:intergenic
CTAACAGTTAAGTCATTCAG+AGG 0.631884 7_1:+38137084 Msa1018210:three_prime_UTR
ACGCCACAAACCCAATGAGT+AGG 0.632533 7_1:-38135998 None:intergenic
CCACATGTGTCATGGCACAC+TGG 0.636762 7_1:-38135467 None:intergenic
GCAGTGCAAGTAGACATGTA+GGG 0.645279 7_1:-38135668 None:intergenic
AAGAGTAAAGAGAAGCACAA+AGG 0.652408 7_1:-38135814 None:intergenic
AACGTACTGTTGTACATGGG+AGG 0.655418 7_1:-38136220 None:intergenic
GTACTGTTGTACATGGGAGG+AGG 0.656054 7_1:-38136217 None:intergenic
AATCGGAGGATAATGCTGCT+GGG 0.657349 7_1:+38137044 Msa1018210:exon
TTTCAGCCTAGTGTAATCGG+AGG 0.665898 7_1:+38137030 Msa1018210:exon
GTATTGAGCCACATGTGTCA+TGG 0.676021 7_1:-38135475 None:intergenic
TTGGTAGAGATGCTAAGAGG+AGG 0.680960 7_1:-38135433 None:intergenic
ACAGTTAAGTCATTCAGAGG+AGG 0.686509 7_1:+38137087 Msa1018210:three_prime_UTR
TATGTATGGGTTGAATAGTG+GGG 0.690061 7_1:-38135537 None:intergenic
GTGGCATTGAAATATAGTCA+TGG 0.693317 7_1:+38136019 Msa1018210:CDS
ACTAGTTGTGAGAGTAGTGG+TGG 0.700797 7_1:+38136073 Msa1018210:CDS
TGTACTAGTTGTGAGAGTAG+TGG 0.707622 7_1:+38136070 Msa1018210:CDS
GATAGCAATACACCAAAAGG+GGG 0.708242 7_1:-38137408 None:intergenic
GGGGAACCTCGACGGCAACG+GGG 0.708881 7_1:+38135904 Msa1018210:CDS
GTGCAAGTAGACATGTAGGG+TGG 0.711373 7_1:-38135665 None:intergenic
CATGTTGTGTATACTCACCG+GGG 0.745636 7_1:+38135885 Msa1018210:CDS
CCAGTGTGCCATGACACATG+TGG 0.747102 7_1:+38135467 Msa1018210:CDS
CAAACAAATCCACTTCCTGG+AGG 0.785898 7_1:-38136112 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTGTTTCTTTTATTAT+TGG + chr7_1:38136255-38136274 Msa1018210:intron 15.0%
!!! TTCATTTTCATATATCATAT+AGG + chr7_1:38136653-38136672 Msa1018210:intron 15.0%
!!! TAGTGTATTGTTTTTTTTTT+TGG + chr7_1:38137207-38137226 Msa1018210:three_prime_UTR 15.0%
!! ATAACAATAAATCTATCTTT+AGG + chr7_1:38137485-38137504 Msa1018210:three_prime_UTR 15.0%
!!! TTTGTTGTTTCTTTTATTAT+TGG + chr7_1:38136255-38136274 Msa1018210:intron 15.0%
!!! TTCATTTTCATATATCATAT+AGG + chr7_1:38136653-38136672 Msa1018210:intron 15.0%
!!! TAGTGTATTGTTTTTTTTTT+TGG + chr7_1:38137207-38137226 Msa1018210:three_prime_UTR 15.0%
!! GAGTATGTATAAGTAATTAA+GGG + chr7_1:38136675-38136694 Msa1018210:intron 20.0%
!! CAAGAAAAAGGAAAAATAAA+TGG + chr7_1:38136766-38136785 Msa1018210:intron 20.0%
!! AAAAAGGAAAAATAAATGGT+TGG + chr7_1:38136770-38136789 Msa1018210:intron 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG + chr7_1:38137150-38137169 Msa1018210:three_prime_UTR 20.0%
!! TATTCAACATCAATATGTAA+TGG - chr7_1:38137468-38137487 None:intergenic 20.0%
!! GAGTATGTATAAGTAATTAA+GGG + chr7_1:38136675-38136694 Msa1018210:intron 20.0%
!! CAAGAAAAAGGAAAAATAAA+TGG + chr7_1:38136766-38136785 Msa1018210:intron 20.0%
!! AAAAAGGAAAAATAAATGGT+TGG + chr7_1:38136770-38136789 Msa1018210:intron 20.0%
!! AAAGTACATTCAAAGAAAAA+TGG + chr7_1:38137150-38137169 Msa1018210:three_prime_UTR 20.0%
!! TATTCAACATCAATATGTAA+TGG - chr7_1:38137468-38137487 None:intergenic 20.0%
!!! ATGAGAATGTTTGAGTTTTA+AGG - chr7_1:38135598-38135617 None:intergenic 25.0%
!!! AAATGGTTGAACTTTTTTCT+TGG - chr7_1:38135775-38135794 None:intergenic 25.0%
! TGATTGTAGTAGTTATACTT+CGG + chr7_1:38135946-38135965 Msa1018210:CDS 25.0%
! AAAGAAACAACAAAAAGAGA+AGG - chr7_1:38136249-38136268 None:intergenic 25.0%
!!! ACAACTTTTTGAAACTTAAG+GGG - chr7_1:38136298-38136317 None:intergenic 25.0%
!!! CACAACTTTTTGAAACTTAA+GGG - chr7_1:38136299-38136318 None:intergenic 25.0%
!!! TCACAACTTTTTGAAACTTA+AGG - chr7_1:38136300-38136319 None:intergenic 25.0%
!! GTTTCAAAAAGTTGTGATTT+TGG + chr7_1:38136303-38136322 Msa1018210:intron 25.0%
!!! TGGAAAGAGTTGTTTTTTTA+GGG - chr7_1:38136331-38136350 None:intergenic 25.0%
!!! TTGGAAAGAGTTGTTTTTTT+AGG - chr7_1:38136514-38136533 None:intergenic 25.0%
!!! TTACTTTTTGACTCGAAATT+AGG + chr7_1:38136414-38136433 Msa1018210:intron 25.0%
!!! TACTTTTTGACTCGAAATTA+GGG + chr7_1:38136415-38136434 Msa1018210:intron 25.0%
! TTGCAACATAAAGTAAACTT+AGG + chr7_1:38136487-38136506 Msa1018210:intron 25.0%
! TGCAACATAAAGTAAACTTA+GGG + chr7_1:38136488-38136507 Msa1018210:intron 25.0%
!!! TGGAAAGAGTTGTTTTTTTT+AGG + chr7_1:38136515-38136534 Msa1018210:intron 25.0%
!!! GGAAAGAGTTGTTTTTTTTA+GGG + chr7_1:38136516-38136535 Msa1018210:intron 25.0%
!!! GAAAGAGTTGTTTTTTTTAG+GGG + chr7_1:38136517-38136536 Msa1018210:intron 25.0%
!! TAAAGGCTTAATTACACTTT+TGG - chr7_1:38136575-38136594 None:intergenic 25.0%
! GGAGTATGTATAAGTAATTA+AGG + chr7_1:38136674-38136693 Msa1018210:intron 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG + chr7_1:38136754-38136773 Msa1018210:intron 25.0%
! AAAAATAAATGGTTGGACAT+TGG + chr7_1:38136777-38136796 Msa1018210:intron 25.0%
! ATAATAGTTACCCATTACTT+TGG - chr7_1:38136853-38136872 None:intergenic 25.0%
! TATTATTCTGTACACTTGAA+AGG + chr7_1:38136867-38136886 Msa1018210:intron 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG + chr7_1:38136913-38136932 Msa1018210:intron 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG - chr7_1:38137123-38137142 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG - chr7_1:38137146-38137165 None:intergenic 25.0%
!!! TTTTTTTTTTGGTACAAGTC+TGG + chr7_1:38137218-38137237 Msa1018210:three_prime_UTR 25.0%
! TGGTGTATTGTCAAAAAAAA+GGG + chr7_1:38137238-38137257 Msa1018210:three_prime_UTR 25.0%
! TCTCTGTAAAAAAAATTGCA+TGG + chr7_1:38137429-38137448 Msa1018210:three_prime_UTR 25.0%
!!! ATGAGAATGTTTGAGTTTTA+AGG - chr7_1:38135598-38135617 None:intergenic 25.0%
!!! AAATGGTTGAACTTTTTTCT+TGG - chr7_1:38135775-38135794 None:intergenic 25.0%
! TGATTGTAGTAGTTATACTT+CGG + chr7_1:38135946-38135965 Msa1018210:CDS 25.0%
! AAAGAAACAACAAAAAGAGA+AGG - chr7_1:38136249-38136268 None:intergenic 25.0%
!!! ACAACTTTTTGAAACTTAAG+GGG - chr7_1:38136298-38136317 None:intergenic 25.0%
!!! CACAACTTTTTGAAACTTAA+GGG - chr7_1:38136299-38136318 None:intergenic 25.0%
!!! TCACAACTTTTTGAAACTTA+AGG - chr7_1:38136300-38136319 None:intergenic 25.0%
!! GTTTCAAAAAGTTGTGATTT+TGG + chr7_1:38136303-38136322 Msa1018210:intron 25.0%
!!! TGGAAAGAGTTGTTTTTTTA+GGG - chr7_1:38136331-38136350 None:intergenic 25.0%
!!! TTGGAAAGAGTTGTTTTTTT+AGG - chr7_1:38136514-38136533 None:intergenic 25.0%
!!! TTACTTTTTGACTCGAAATT+AGG + chr7_1:38136414-38136433 Msa1018210:intron 25.0%
!!! TACTTTTTGACTCGAAATTA+GGG + chr7_1:38136415-38136434 Msa1018210:intron 25.0%
! TTGCAACATAAAGTAAACTT+AGG + chr7_1:38136487-38136506 Msa1018210:intron 25.0%
! TGCAACATAAAGTAAACTTA+GGG + chr7_1:38136488-38136507 Msa1018210:intron 25.0%
!!! TGGAAAGAGTTGTTTTTTTT+AGG + chr7_1:38136515-38136534 Msa1018210:intron 25.0%
!!! GGAAAGAGTTGTTTTTTTTA+GGG + chr7_1:38136516-38136535 Msa1018210:intron 25.0%
!!! GAAAGAGTTGTTTTTTTTAG+GGG + chr7_1:38136517-38136536 Msa1018210:intron 25.0%
!! TAAAGGCTTAATTACACTTT+TGG - chr7_1:38136575-38136594 None:intergenic 25.0%
! GGAGTATGTATAAGTAATTA+AGG + chr7_1:38136674-38136693 Msa1018210:intron 25.0%
!! ATTTTCTGAGTACAAGAAAA+AGG + chr7_1:38136754-38136773 Msa1018210:intron 25.0%
! AAAAATAAATGGTTGGACAT+TGG + chr7_1:38136777-38136796 Msa1018210:intron 25.0%
! ATAATAGTTACCCATTACTT+TGG - chr7_1:38136853-38136872 None:intergenic 25.0%
! TATTATTCTGTACACTTGAA+AGG + chr7_1:38136867-38136886 Msa1018210:intron 25.0%
!!! TTTATATTGATTCTCTCTCT+TGG + chr7_1:38136913-38136932 Msa1018210:intron 25.0%
!! TAACTTTTGTGCATTAAAGA+AGG - chr7_1:38137123-38137142 None:intergenic 25.0%
!! TCTTTGAATGTACTTTTCTA+AGG - chr7_1:38137146-38137165 None:intergenic 25.0%
!!! TTTTTTTTTTGGTACAAGTC+TGG + chr7_1:38137218-38137237 Msa1018210:three_prime_UTR 25.0%
! TGGTGTATTGTCAAAAAAAA+GGG + chr7_1:38137238-38137257 Msa1018210:three_prime_UTR 25.0%
! TCTCTGTAAAAAAAATTGCA+TGG + chr7_1:38137429-38137448 Msa1018210:three_prime_UTR 25.0%
! ATACAAGTCAAGTATCCTTT+TGG + chr7_1:38135494-38135513 Msa1018210:CDS 30.0%
! TTATGTATGGGTTGAATAGT+GGG - chr7_1:38135541-38135560 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG - chr7_1:38135553-38135572 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG - chr7_1:38135554-38135573 None:intergenic 30.0%
TACATAACATGCACATCAAA+CGG + chr7_1:38135554-38135573 Msa1018210:CDS 30.0%
!!! TTTGAGTTTTAAGGATGAGT+TGG - chr7_1:38135589-38135608 None:intergenic 30.0%
TGTATGAAATGGAGGTTATA+GGG - chr7_1:38135622-38135641 None:intergenic 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG - chr7_1:38135792-38135811 None:intergenic 30.0%
TATACACAACATGTGTTAGT+AGG - chr7_1:38135878-38135897 None:intergenic 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG + chr7_1:38136124-38136143 Msa1018210:CDS 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG + chr7_1:38136127-38136146 Msa1018210:CDS 30.0%
AAAAACGTACTGTTGTACAT+GGG - chr7_1:38136226-38136245 None:intergenic 30.0%
!!! GAAAGAGTTGTTTTTTTAGG+GGG - chr7_1:38136329-38136348 None:intergenic 30.0%
!!! GGAAAGAGTTGTTTTTTTAG+GGG - chr7_1:38136330-38136349 None:intergenic 30.0%
GAAAGTAAACTTAGGAGATT+TGG - chr7_1:38136351-38136370 None:intergenic 30.0%
TTGCAACAGAAAGTAAACTT+AGG - chr7_1:38136359-38136378 None:intergenic 30.0%
AGTCAAAAAGTAAACTTAGG+GGG - chr7_1:38136407-38136426 None:intergenic 30.0%
GAGTCAAAAAGTAAACTTAG+GGG - chr7_1:38136408-38136427 None:intergenic 30.0%
CGAGTCAAAAAGTAAACTTA+GGG - chr7_1:38136409-38136428 None:intergenic 30.0%
TCGAGTCAAAAAGTAAACTT+AGG - chr7_1:38136410-38136429 None:intergenic 30.0%
!! ACTTTTTGACTCGAAATTAG+GGG + chr7_1:38136416-38136435 Msa1018210:intron 30.0%
GCAACATAAAGTAAACTTAG+GGG + chr7_1:38136489-38136508 Msa1018210:intron 30.0%
CAACATAAAGTAAACTTAGG+GGG + chr7_1:38136490-38136509 Msa1018210:intron 30.0%
! ATTTCCCAAAGTTGTGATTT+TGG - chr7_1:38136544-38136563 None:intergenic 30.0%
! ATCACAACTTTGGGAAATTT+AGG + chr7_1:38136546-38136565 Msa1018210:intron 30.0%
! TCACAACTTTGGGAAATTTA+GGG + chr7_1:38136547-38136566 Msa1018210:intron 30.0%
! TTGAAATTCCCCATAGTTTT+CGG + chr7_1:38136623-38136642 Msa1018210:intron 30.0%
AAAAAAGACCCGAAAACTAT+GGG - chr7_1:38136635-38136654 None:intergenic 30.0%
AAACCAATATGCCAAAGTAA+TGG + chr7_1:38136839-38136858 Msa1018210:intron 30.0%
AACCAATATGCCAAAGTAAT+GGG + chr7_1:38136840-38136859 Msa1018210:intron 30.0%
AACAATACACTAGACTTCAT+AGG - chr7_1:38137199-38137218 None:intergenic 30.0%
CTGGTGTATTGTCAAAAAAA+AGG + chr7_1:38137237-38137256 Msa1018210:three_prime_UTR 30.0%
ACAAATTTATCTTTGCGTCA+AGG + chr7_1:38137383-38137402 Msa1018210:three_prime_UTR 30.0%
! ATACAAGTCAAGTATCCTTT+TGG + chr7_1:38135494-38135513 Msa1018210:CDS 30.0%
! TTATGTATGGGTTGAATAGT+GGG - chr7_1:38135541-38135560 None:intergenic 30.0%
TTGATGTGCATGTTATGTAT+GGG - chr7_1:38135553-38135572 None:intergenic 30.0%
TTTGATGTGCATGTTATGTA+TGG - chr7_1:38135554-38135573 None:intergenic 30.0%
TACATAACATGCACATCAAA+CGG + chr7_1:38135554-38135573 Msa1018210:CDS 30.0%
!!! TTTGAGTTTTAAGGATGAGT+TGG - chr7_1:38135589-38135608 None:intergenic 30.0%
TGTATGAAATGGAGGTTATA+GGG - chr7_1:38135622-38135641 None:intergenic 30.0%
!! ATCAAAAGAAGTGTCACAAA+TGG - chr7_1:38135792-38135811 None:intergenic 30.0%
TATACACAACATGTGTTAGT+AGG - chr7_1:38135878-38135897 None:intergenic 30.0%
! GGATTTGTTTGTGTTTGTAA+AGG + chr7_1:38136124-38136143 Msa1018210:CDS 30.0%
TTTGTTTGTGTTTGTAAAGG+TGG + chr7_1:38136127-38136146 Msa1018210:CDS 30.0%
AAAAACGTACTGTTGTACAT+GGG - chr7_1:38136226-38136245 None:intergenic 30.0%
!!! GAAAGAGTTGTTTTTTTAGG+GGG - chr7_1:38136329-38136348 None:intergenic 30.0%
!!! GGAAAGAGTTGTTTTTTTAG+GGG - chr7_1:38136330-38136349 None:intergenic 30.0%
GAAAGTAAACTTAGGAGATT+TGG - chr7_1:38136351-38136370 None:intergenic 30.0%
TTGCAACAGAAAGTAAACTT+AGG - chr7_1:38136359-38136378 None:intergenic 30.0%
AGTCAAAAAGTAAACTTAGG+GGG - chr7_1:38136407-38136426 None:intergenic 30.0%
GAGTCAAAAAGTAAACTTAG+GGG - chr7_1:38136408-38136427 None:intergenic 30.0%
CGAGTCAAAAAGTAAACTTA+GGG - chr7_1:38136409-38136428 None:intergenic 30.0%
TCGAGTCAAAAAGTAAACTT+AGG - chr7_1:38136410-38136429 None:intergenic 30.0%
!! ACTTTTTGACTCGAAATTAG+GGG + chr7_1:38136416-38136435 Msa1018210:intron 30.0%
GCAACATAAAGTAAACTTAG+GGG + chr7_1:38136489-38136508 Msa1018210:intron 30.0%
CAACATAAAGTAAACTTAGG+GGG + chr7_1:38136490-38136509 Msa1018210:intron 30.0%
! ATTTCCCAAAGTTGTGATTT+TGG - chr7_1:38136544-38136563 None:intergenic 30.0%
! ATCACAACTTTGGGAAATTT+AGG + chr7_1:38136546-38136565 Msa1018210:intron 30.0%
! TCACAACTTTGGGAAATTTA+GGG + chr7_1:38136547-38136566 Msa1018210:intron 30.0%
! TTGAAATTCCCCATAGTTTT+CGG + chr7_1:38136623-38136642 Msa1018210:intron 30.0%
AAAAAAGACCCGAAAACTAT+GGG - chr7_1:38136635-38136654 None:intergenic 30.0%
AAACCAATATGCCAAAGTAA+TGG + chr7_1:38136839-38136858 Msa1018210:intron 30.0%
AACCAATATGCCAAAGTAAT+GGG + chr7_1:38136840-38136859 Msa1018210:intron 30.0%
AACAATACACTAGACTTCAT+AGG - chr7_1:38137199-38137218 None:intergenic 30.0%
CTGGTGTATTGTCAAAAAAA+AGG + chr7_1:38137237-38137256 Msa1018210:three_prime_UTR 30.0%
ACAAATTTATCTTTGCGTCA+AGG + chr7_1:38137383-38137402 Msa1018210:three_prime_UTR 30.0%
! TATGTATGGGTTGAATAGTG+GGG - chr7_1:38135540-38135559 None:intergenic 35.0%
! GTTATGTATGGGTTGAATAG+TGG - chr7_1:38135542-38135561 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG - chr7_1:38135623-38135642 None:intergenic 35.0%
GTTAAGTCTATGCCAAAGTT+TGG - chr7_1:38135707-38135726 None:intergenic 35.0%
TGAAAGTGGAGGAAGATATT+TGG - chr7_1:38135739-38135758 None:intergenic 35.0%
!!! AACTTTTTTCTTGGCAAGAG+AGG - chr7_1:38135766-38135785 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG - chr7_1:38135817-38135836 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG - chr7_1:38135866-38135885 None:intergenic 35.0%
! GTGGCATTGAAATATAGTCA+TGG + chr7_1:38136019-38136038 Msa1018210:CDS 35.0%
CTCACAACTAGTACATTTAG+TGG - chr7_1:38136065-38136084 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG - chr7_1:38136165-38136184 None:intergenic 35.0%
CTCTAATTACGATCAAAACC+AGG + chr7_1:38136171-38136190 Msa1018210:CDS 35.0%
ATCAAAACCAGGATTTCCTT+TGG + chr7_1:38136182-38136201 Msa1018210:CDS 35.0%
TCAAAACCAGGATTTCCTTT+GGG + chr7_1:38136183-38136202 Msa1018210:CDS 35.0%
GAAAAACGTACTGTTGTACA+TGG - chr7_1:38136227-38136246 None:intergenic 35.0%
!! CTTTTTGACTCGAAATTAGG+GGG + chr7_1:38136417-38136436 Msa1018210:intron 35.0%
! CACAACTTTGGGAAATTTAG+GGG + chr7_1:38136548-38136567 Msa1018210:intron 35.0%
! ACAACTTTGGGAAATTTAGG+GGG + chr7_1:38136549-38136568 Msa1018210:intron 35.0%
! TGAAATTCCCCATAGTTTTC+GGG + chr7_1:38136624-38136643 Msa1018210:intron 35.0%
AAAAAGACCCGAAAACTATG+GGG - chr7_1:38136634-38136653 None:intergenic 35.0%
GAAAAAAGACCCGAAAACTA+TGG - chr7_1:38136636-38136655 None:intergenic 35.0%
TACCCATTACTTTGGCATAT+TGG - chr7_1:38136845-38136864 None:intergenic 35.0%
CTGTTCTGTTATGAACAGTT+GGG + chr7_1:38136975-38136994 Msa1018210:intron 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG + chr7_1:38137027-38137046 Msa1018210:exon 35.0%
CTAACAGTTAAGTCATTCAG+AGG + chr7_1:38137084-38137103 Msa1018210:three_prime_UTR 35.0%
TACACTAGACTTCATAGGAA+TGG - chr7_1:38137194-38137213 None:intergenic 35.0%
GTTGTGTACAATACACCAAA+TGG - chr7_1:38137314-38137333 None:intergenic 35.0%
!!! CACAACCTTATCCCATTTTT+TGG + chr7_1:38137328-38137347 Msa1018210:three_prime_UTR 35.0%
TCTTGCCAAAAAATGGGATA+AGG - chr7_1:38137336-38137355 None:intergenic 35.0%
!!! TTATCCCATTTTTTGGCAAG+AGG + chr7_1:38137335-38137354 Msa1018210:three_prime_UTR 35.0%
AGATAGCAATACACCAAAAG+GGG - chr7_1:38137412-38137431 None:intergenic 35.0%
GAGATAGCAATACACCAAAA+GGG - chr7_1:38137413-38137432 None:intergenic 35.0%
AGAGATAGCAATACACCAAA+AGG - chr7_1:38137414-38137433 None:intergenic 35.0%
! TATGTATGGGTTGAATAGTG+GGG - chr7_1:38135540-38135559 None:intergenic 35.0%
! GTTATGTATGGGTTGAATAG+TGG - chr7_1:38135542-38135561 None:intergenic 35.0%
GTGTATGAAATGGAGGTTAT+AGG - chr7_1:38135623-38135642 None:intergenic 35.0%
GTTAAGTCTATGCCAAAGTT+TGG - chr7_1:38135707-38135726 None:intergenic 35.0%
TGAAAGTGGAGGAAGATATT+TGG - chr7_1:38135739-38135758 None:intergenic 35.0%
!!! AACTTTTTTCTTGGCAAGAG+AGG - chr7_1:38135766-38135785 None:intergenic 35.0%
! AAGAGTAAAGAGAAGCACAA+AGG - chr7_1:38135817-38135836 None:intergenic 35.0%
GTGTTAGTAGGAGAAAAAAG+AGG - chr7_1:38135866-38135885 None:intergenic 35.0%
! GTGGCATTGAAATATAGTCA+TGG + chr7_1:38136019-38136038 Msa1018210:CDS 35.0%
CTCACAACTAGTACATTTAG+TGG - chr7_1:38136065-38136084 None:intergenic 35.0%
GATCGTAATTAGAGCAATCA+AGG - chr7_1:38136165-38136184 None:intergenic 35.0%
CTCTAATTACGATCAAAACC+AGG + chr7_1:38136171-38136190 Msa1018210:CDS 35.0%
ATCAAAACCAGGATTTCCTT+TGG + chr7_1:38136182-38136201 Msa1018210:CDS 35.0%
TCAAAACCAGGATTTCCTTT+GGG + chr7_1:38136183-38136202 Msa1018210:CDS 35.0%
GAAAAACGTACTGTTGTACA+TGG - chr7_1:38136227-38136246 None:intergenic 35.0%
!! CTTTTTGACTCGAAATTAGG+GGG + chr7_1:38136417-38136436 Msa1018210:intron 35.0%
! CACAACTTTGGGAAATTTAG+GGG + chr7_1:38136548-38136567 Msa1018210:intron 35.0%
! ACAACTTTGGGAAATTTAGG+GGG + chr7_1:38136549-38136568 Msa1018210:intron 35.0%
! TGAAATTCCCCATAGTTTTC+GGG + chr7_1:38136624-38136643 Msa1018210:intron 35.0%
AAAAAGACCCGAAAACTATG+GGG - chr7_1:38136634-38136653 None:intergenic 35.0%
GAAAAAAGACCCGAAAACTA+TGG - chr7_1:38136636-38136655 None:intergenic 35.0%
TACCCATTACTTTGGCATAT+TGG - chr7_1:38136845-38136864 None:intergenic 35.0%
CTGTTCTGTTATGAACAGTT+GGG + chr7_1:38136975-38136994 Msa1018210:intron 35.0%
! CATTTTCAGCCTAGTGTAAT+CGG + chr7_1:38137027-38137046 Msa1018210:exon 35.0%
CTAACAGTTAAGTCATTCAG+AGG + chr7_1:38137084-38137103 Msa1018210:three_prime_UTR 35.0%
TACACTAGACTTCATAGGAA+TGG - chr7_1:38137194-38137213 None:intergenic 35.0%
GTTGTGTACAATACACCAAA+TGG - chr7_1:38137314-38137333 None:intergenic 35.0%
!!! CACAACCTTATCCCATTTTT+TGG + chr7_1:38137328-38137347 Msa1018210:three_prime_UTR 35.0%
TCTTGCCAAAAAATGGGATA+AGG - chr7_1:38137336-38137355 None:intergenic 35.0%
!!! TTATCCCATTTTTTGGCAAG+AGG + chr7_1:38137335-38137354 Msa1018210:three_prime_UTR 35.0%
AGATAGCAATACACCAAAAG+GGG - chr7_1:38137412-38137431 None:intergenic 35.0%
GAGATAGCAATACACCAAAA+GGG - chr7_1:38137413-38137432 None:intergenic 35.0%
AGAGATAGCAATACACCAAA+AGG - chr7_1:38137414-38137433 None:intergenic 35.0%
GATCATGAAGAAGTTGAGGA+GGG - chr7_1:38135414-38135433 None:intergenic 40.0%
AGTGGAAGTGGTGTATGAAA+TGG - chr7_1:38135633-38135652 None:intergenic 40.0%
! AAAGTTTGGTGAGGTTTGCA+TGG - chr7_1:38135693-38135712 None:intergenic 40.0%
ATGCAAACCTCACCAAACTT+TGG + chr7_1:38135692-38135711 Msa1018210:CDS 40.0%
GTGGAGGAAGATATTTGGAA+TGG - chr7_1:38135734-38135753 None:intergenic 40.0%
!!! TTTTTTCTTGGCAAGAGAGG+AGG - chr7_1:38135763-38135782 None:intergenic 40.0%
TACCAAGTGAGACTACTTGA+GGG - chr7_1:38135841-38135860 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG - chr7_1:38135842-38135861 None:intergenic 40.0%
CACATGTTGTGTATACTCAC+CGG + chr7_1:38135883-38135902 Msa1018210:CDS 40.0%
ACATGTTGTGTATACTCACC+GGG + chr7_1:38135884-38135903 Msa1018210:CDS 40.0%
ACAAACCCAATGAGTAGGAT+CGG - chr7_1:38135996-38136015 None:intergenic 40.0%
TGTACTAGTTGTGAGAGTAG+TGG + chr7_1:38136070-38136089 Msa1018210:CDS 40.0%
ACACAAACAAATCCACTTCC+TGG - chr7_1:38136118-38136137 None:intergenic 40.0%
GTAATTAGAGCAATCAAGGC+TGG - chr7_1:38136161-38136180 None:intergenic 40.0%
TAAAGTAAACTTAGGGGGCT+TGG + chr7_1:38136495-38136514 Msa1018210:intron 40.0%
GGGACCAAAATCACAACTTT+GGG + chr7_1:38136537-38136556 Msa1018210:intron 40.0%
CCAACTGTTCATAACAGAAC+AGG - chr7_1:38136977-38136996 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG + chr7_1:38136974-38136993 Msa1018210:intron 40.0%
TATGAACAGTTGGGAATGTC+TGG + chr7_1:38136984-38137003 Msa1018210:intron 40.0%
GAAAATGATACCAGCCAAGA+TGG - chr7_1:38137014-38137033 None:intergenic 40.0%
CATTATCCTCCGATTACACT+AGG - chr7_1:38137039-38137058 None:intergenic 40.0%
ACAGTTAAGTCATTCAGAGG+AGG + chr7_1:38137087-38137106 Msa1018210:three_prime_UTR 40.0%
TGGGAAATGATCTCACCATT+TGG + chr7_1:38137296-38137315 Msa1018210:three_prime_UTR 40.0%
ACAGCCTCTTGCCAAAAAAT+GGG - chr7_1:38137342-38137361 None:intergenic 40.0%
AACAGCCTCTTGCCAAAAAA+TGG - chr7_1:38137343-38137362 None:intergenic 40.0%
GATAGCAATACACCAAAAGG+GGG - chr7_1:38137411-38137430 None:intergenic 40.0%
GATCATGAAGAAGTTGAGGA+GGG - chr7_1:38135414-38135433 None:intergenic 40.0%
AGTGGAAGTGGTGTATGAAA+TGG - chr7_1:38135633-38135652 None:intergenic 40.0%
! AAAGTTTGGTGAGGTTTGCA+TGG - chr7_1:38135693-38135712 None:intergenic 40.0%
ATGCAAACCTCACCAAACTT+TGG + chr7_1:38135692-38135711 Msa1018210:CDS 40.0%
GTGGAGGAAGATATTTGGAA+TGG - chr7_1:38135734-38135753 None:intergenic 40.0%
!!! TTTTTTCTTGGCAAGAGAGG+AGG - chr7_1:38135763-38135782 None:intergenic 40.0%
TACCAAGTGAGACTACTTGA+GGG - chr7_1:38135841-38135860 None:intergenic 40.0%
ATACCAAGTGAGACTACTTG+AGG - chr7_1:38135842-38135861 None:intergenic 40.0%
CACATGTTGTGTATACTCAC+CGG + chr7_1:38135883-38135902 Msa1018210:CDS 40.0%
ACATGTTGTGTATACTCACC+GGG + chr7_1:38135884-38135903 Msa1018210:CDS 40.0%
ACAAACCCAATGAGTAGGAT+CGG - chr7_1:38135996-38136015 None:intergenic 40.0%
TGTACTAGTTGTGAGAGTAG+TGG + chr7_1:38136070-38136089 Msa1018210:CDS 40.0%
ACACAAACAAATCCACTTCC+TGG - chr7_1:38136118-38136137 None:intergenic 40.0%
GTAATTAGAGCAATCAAGGC+TGG - chr7_1:38136161-38136180 None:intergenic 40.0%
TAAAGTAAACTTAGGGGGCT+TGG + chr7_1:38136495-38136514 Msa1018210:intron 40.0%
GGGACCAAAATCACAACTTT+GGG + chr7_1:38136537-38136556 Msa1018210:intron 40.0%
CCAACTGTTCATAACAGAAC+AGG - chr7_1:38136977-38136996 None:intergenic 40.0%
CCTGTTCTGTTATGAACAGT+TGG + chr7_1:38136974-38136993 Msa1018210:intron 40.0%
TATGAACAGTTGGGAATGTC+TGG + chr7_1:38136984-38137003 Msa1018210:intron 40.0%
GAAAATGATACCAGCCAAGA+TGG - chr7_1:38137014-38137033 None:intergenic 40.0%
CATTATCCTCCGATTACACT+AGG - chr7_1:38137039-38137058 None:intergenic 40.0%
ACAGTTAAGTCATTCAGAGG+AGG + chr7_1:38137087-38137106 Msa1018210:three_prime_UTR 40.0%
TGGGAAATGATCTCACCATT+TGG + chr7_1:38137296-38137315 Msa1018210:three_prime_UTR 40.0%
ACAGCCTCTTGCCAAAAAAT+GGG - chr7_1:38137342-38137361 None:intergenic 40.0%
AACAGCCTCTTGCCAAAAAA+TGG - chr7_1:38137343-38137362 None:intergenic 40.0%
GATAGCAATACACCAAAAGG+GGG - chr7_1:38137411-38137430 None:intergenic 40.0%
GAGGAAACAAGCAAAGCCAA+TGG + chr7_1:38135358-38135377 Msa1018210:exon 45.0%
! AGTAGTAGTGGTAGTGCCAT+TGG - chr7_1:38135377-38135396 None:intergenic 45.0%
GAAAGAGGTGGTAGTAGTAG+TGG - chr7_1:38135389-38135408 None:intergenic 45.0%
GGATCATGAAGAAGTTGAGG+AGG - chr7_1:38135415-38135434 None:intergenic 45.0%
GGAGGATCATGAAGAAGTTG+AGG - chr7_1:38135418-38135437 None:intergenic 45.0%
TTGGTAGAGATGCTAAGAGG+AGG - chr7_1:38135436-38135455 None:intergenic 45.0%
! CTGTTGGTAGAGATGCTAAG+AGG - chr7_1:38135439-38135458 None:intergenic 45.0%
GTATTGAGCCACATGTGTCA+TGG - chr7_1:38135478-38135497 None:intergenic 45.0%
! GTCAAGTATCCTTTTGGCAC+AGG + chr7_1:38135500-38135519 Msa1018210:CDS 45.0%
GGAAGTGGTGTATGAAATGG+AGG - chr7_1:38135630-38135649 None:intergenic 45.0%
TGTGAGTATGAGAGTGGAAG+TGG - chr7_1:38135645-38135664 None:intergenic 45.0%
GCAGTGCAAGTAGACATGTA+GGG - chr7_1:38135671-38135690 None:intergenic 45.0%
! GTCTATGCCAAAGTTTGGTG+AGG - chr7_1:38135702-38135721 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG + chr7_1:38135885-38135904 Msa1018210:CDS 45.0%
GATCCTACTCATTGGGTTTG+TGG + chr7_1:38135995-38136014 Msa1018210:CDS 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG + chr7_1:38136073-38136092 Msa1018210:CDS 45.0%
CAAACAAATCCACTTCCTGG+AGG - chr7_1:38136115-38136134 None:intergenic 45.0%
AACGTACTGTTGTACATGGG+AGG - chr7_1:38136223-38136242 None:intergenic 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG + chr7_1:38136372-38136391 Msa1018210:intron 45.0%
GGGCCTGCAAAGTAAACTTA+GGG + chr7_1:38136437-38136456 Msa1018210:intron 45.0%
GGCCTGCAAAGTAAACTTAG+GGG + chr7_1:38136438-38136457 Msa1018210:intron 45.0%
GCCTGCAAAGTAAACTTAGG+GGG + chr7_1:38136439-38136458 Msa1018210:intron 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG - chr7_1:38136372-38136391 None:intergenic 45.0%
GGGGACCAAAATCACAACTT+TGG + chr7_1:38136536-38136555 Msa1018210:intron 45.0%
! GAATGTCTGGAGTTCCATCT+TGG + chr7_1:38136997-38137016 Msa1018210:CDS 45.0%
TTTCAGCCTAGTGTAATCGG+AGG + chr7_1:38137030-38137049 Msa1018210:exon 45.0%
TAATCGGAGGATAATGCTGC+TGG + chr7_1:38137043-38137062 Msa1018210:exon 45.0%
AATCGGAGGATAATGCTGCT+GGG + chr7_1:38137044-38137063 Msa1018210:exon 45.0%
GAGGAAACAAGCAAAGCCAA+TGG + chr7_1:38135358-38135377 Msa1018210:exon 45.0%
! AGTAGTAGTGGTAGTGCCAT+TGG - chr7_1:38135377-38135396 None:intergenic 45.0%
GAAAGAGGTGGTAGTAGTAG+TGG - chr7_1:38135389-38135408 None:intergenic 45.0%
GGATCATGAAGAAGTTGAGG+AGG - chr7_1:38135415-38135434 None:intergenic 45.0%
GGAGGATCATGAAGAAGTTG+AGG - chr7_1:38135418-38135437 None:intergenic 45.0%
TTGGTAGAGATGCTAAGAGG+AGG - chr7_1:38135436-38135455 None:intergenic 45.0%
! CTGTTGGTAGAGATGCTAAG+AGG - chr7_1:38135439-38135458 None:intergenic 45.0%
GTATTGAGCCACATGTGTCA+TGG - chr7_1:38135478-38135497 None:intergenic 45.0%
! GTCAAGTATCCTTTTGGCAC+AGG + chr7_1:38135500-38135519 Msa1018210:CDS 45.0%
GGAAGTGGTGTATGAAATGG+AGG - chr7_1:38135630-38135649 None:intergenic 45.0%
TGTGAGTATGAGAGTGGAAG+TGG - chr7_1:38135645-38135664 None:intergenic 45.0%
GCAGTGCAAGTAGACATGTA+GGG - chr7_1:38135671-38135690 None:intergenic 45.0%
! GTCTATGCCAAAGTTTGGTG+AGG - chr7_1:38135702-38135721 None:intergenic 45.0%
CATGTTGTGTATACTCACCG+GGG + chr7_1:38135885-38135904 Msa1018210:CDS 45.0%
GATCCTACTCATTGGGTTTG+TGG + chr7_1:38135995-38136014 Msa1018210:CDS 45.0%
ACTAGTTGTGAGAGTAGTGG+TGG + chr7_1:38136073-38136092 Msa1018210:CDS 45.0%
CAAACAAATCCACTTCCTGG+AGG - chr7_1:38136115-38136134 None:intergenic 45.0%
AACGTACTGTTGTACATGGG+AGG - chr7_1:38136223-38136242 None:intergenic 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG + chr7_1:38136372-38136391 Msa1018210:intron 45.0%
GGGCCTGCAAAGTAAACTTA+GGG + chr7_1:38136437-38136456 Msa1018210:intron 45.0%
GGCCTGCAAAGTAAACTTAG+GGG + chr7_1:38136438-38136457 Msa1018210:intron 45.0%
GCCTGCAAAGTAAACTTAGG+GGG + chr7_1:38136439-38136458 Msa1018210:intron 45.0%
!! GTTGCAATTTTAGCCCCTCA+TGG - chr7_1:38136372-38136391 None:intergenic 45.0%
GGGGACCAAAATCACAACTT+TGG + chr7_1:38136536-38136555 Msa1018210:intron 45.0%
! GAATGTCTGGAGTTCCATCT+TGG + chr7_1:38136997-38137016 Msa1018210:CDS 45.0%
TTTCAGCCTAGTGTAATCGG+AGG + chr7_1:38137030-38137049 Msa1018210:exon 45.0%
TAATCGGAGGATAATGCTGC+TGG + chr7_1:38137043-38137062 Msa1018210:exon 45.0%
AATCGGAGGATAATGCTGCT+GGG + chr7_1:38137044-38137063 Msa1018210:exon 45.0%
!! TAATTTATTCAAAATAATAA+AGG - chr7_1:38136592-38136611 None:intergenic 5.0%
!! TAATTTATTCAAAATAATAA+AGG - chr7_1:38136592-38136611 None:intergenic 5.0%
AAGTTGAGGAGGGTGGAAAG+AGG - chr7_1:38135404-38135423 None:intergenic 50.0%
CATGAAGAAGTTGAGGAGGG+TGG - chr7_1:38135411-38135430 None:intergenic 50.0%
! TATCCTTTTGGCACAGGTCC+TGG + chr7_1:38135506-38135525 Msa1018210:CDS 50.0%
GTGCAAGTAGACATGTAGGG+TGG - chr7_1:38135668-38135687 None:intergenic 50.0%
GGCAGTGCAAGTAGACATGT+AGG - chr7_1:38135672-38135691 None:intergenic 50.0%
AGAGAGGAGGATGAAAGTGG+AGG - chr7_1:38135750-38135769 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG - chr7_1:38135753-38135772 None:intergenic 50.0%
TGCCCTCAAGTAGTCTCACT+TGG + chr7_1:38135836-38135855 Msa1018210:CDS 50.0%
ACCCTACCGATCCTACTCAT+TGG + chr7_1:38135987-38136006 Msa1018210:CDS 50.0%
CCCAATGAGTAGGATCGGTA+GGG - chr7_1:38135991-38136010 None:intergenic 50.0%
CCCTACCGATCCTACTCATT+GGG + chr7_1:38135988-38136007 Msa1018210:CDS 50.0%
ACCCAATGAGTAGGATCGGT+AGG - chr7_1:38135992-38136011 None:intergenic 50.0%
ACGCCACAAACCCAATGAGT+AGG - chr7_1:38136001-38136020 None:intergenic 50.0%
TACTCATTGGGTTTGTGGCG+TGG + chr7_1:38136000-38136019 Msa1018210:CDS 50.0%
CAGAGTCCCAAAGGAAATCC+TGG - chr7_1:38136192-38136211 None:intergenic 50.0%
GAGGAGATACAGAGTCCCAA+AGG - chr7_1:38136201-38136220 None:intergenic 50.0%
GTACTGTTGTACATGGGAGG+AGG - chr7_1:38136220-38136239 None:intergenic 50.0%
GGGGCTAAAATTGCCATGAG+GGG - chr7_1:38136458-38136477 None:intergenic 50.0%
GGGGGCTAAAATTGCCATGA+GGG - chr7_1:38136457-38136476 None:intergenic 50.0%
AGGGGGCTAAAATTGCCATG+AGG - chr7_1:38136456-38136475 None:intergenic 50.0%
GGGGCCTGCAAAGTAAACTT+AGG + chr7_1:38136436-38136455 Msa1018210:intron 50.0%
GCCCCCTAAGTTTACTTTGC+AGG - chr7_1:38136443-38136462 None:intergenic 50.0%
AGGGGGCTAAAATTGCCATG+AGG + chr7_1:38136456-38136475 Msa1018210:intron 50.0%
GGGGGCTAAAATTGCCATGA+GGG + chr7_1:38136457-38136476 Msa1018210:intron 50.0%
GGGGCTAAAATTGCCATGAG+GGG + chr7_1:38136458-38136477 Msa1018210:intron 50.0%
AAGTTGAGGAGGGTGGAAAG+AGG - chr7_1:38135404-38135423 None:intergenic 50.0%
CATGAAGAAGTTGAGGAGGG+TGG - chr7_1:38135411-38135430 None:intergenic 50.0%
! TATCCTTTTGGCACAGGTCC+TGG + chr7_1:38135506-38135525 Msa1018210:CDS 50.0%
GTGCAAGTAGACATGTAGGG+TGG - chr7_1:38135668-38135687 None:intergenic 50.0%
GGCAGTGCAAGTAGACATGT+AGG - chr7_1:38135672-38135691 None:intergenic 50.0%
AGAGAGGAGGATGAAAGTGG+AGG - chr7_1:38135750-38135769 None:intergenic 50.0%
GCAAGAGAGGAGGATGAAAG+TGG - chr7_1:38135753-38135772 None:intergenic 50.0%
TGCCCTCAAGTAGTCTCACT+TGG + chr7_1:38135836-38135855 Msa1018210:CDS 50.0%
ACCCTACCGATCCTACTCAT+TGG + chr7_1:38135987-38136006 Msa1018210:CDS 50.0%
CCCAATGAGTAGGATCGGTA+GGG - chr7_1:38135991-38136010 None:intergenic 50.0%
CCCTACCGATCCTACTCATT+GGG + chr7_1:38135988-38136007 Msa1018210:CDS 50.0%
ACCCAATGAGTAGGATCGGT+AGG - chr7_1:38135992-38136011 None:intergenic 50.0%
ACGCCACAAACCCAATGAGT+AGG - chr7_1:38136001-38136020 None:intergenic 50.0%
TACTCATTGGGTTTGTGGCG+TGG + chr7_1:38136000-38136019 Msa1018210:CDS 50.0%
CAGAGTCCCAAAGGAAATCC+TGG - chr7_1:38136192-38136211 None:intergenic 50.0%
GAGGAGATACAGAGTCCCAA+AGG - chr7_1:38136201-38136220 None:intergenic 50.0%
GTACTGTTGTACATGGGAGG+AGG - chr7_1:38136220-38136239 None:intergenic 50.0%
GGGGCTAAAATTGCCATGAG+GGG - chr7_1:38136458-38136477 None:intergenic 50.0%
GGGGGCTAAAATTGCCATGA+GGG - chr7_1:38136457-38136476 None:intergenic 50.0%
AGGGGGCTAAAATTGCCATG+AGG - chr7_1:38136456-38136475 None:intergenic 50.0%
GGGGCCTGCAAAGTAAACTT+AGG + chr7_1:38136436-38136455 Msa1018210:intron 50.0%
GCCCCCTAAGTTTACTTTGC+AGG - chr7_1:38136443-38136462 None:intergenic 50.0%
AGGGGGCTAAAATTGCCATG+AGG + chr7_1:38136456-38136475 Msa1018210:intron 50.0%
GGGGGCTAAAATTGCCATGA+GGG + chr7_1:38136457-38136476 Msa1018210:intron 50.0%
GGGGCTAAAATTGCCATGAG+GGG + chr7_1:38136458-38136477 Msa1018210:intron 50.0%
TTGAGGAGGGTGGAAAGAGG+TGG - chr7_1:38135401-38135420 None:intergenic 55.0%
! CACACTGGTGTTGAGGCTGT+TGG - chr7_1:38135455-38135474 None:intergenic 55.0%
! GTCATGGCACACTGGTGTTG+AGG - chr7_1:38135462-38135481 None:intergenic 55.0%
CCACATGTGTCATGGCACAC+TGG - chr7_1:38135470-38135489 None:intergenic 55.0%
CCAGTGTGCCATGACACATG+TGG + chr7_1:38135467-38135486 Msa1018210:CDS 55.0%
CAACCAGGACCTGTGCCAAA+AGG - chr7_1:38135512-38135531 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG + chr7_1:38135512-38135531 Msa1018210:CDS 55.0%
! AATAGTGGGGATCCGCAACC+AGG - chr7_1:38135527-38135546 None:intergenic 55.0%
GGGTGGTGTGAGTATGAGAG+TGG - chr7_1:38135651-38135670 None:intergenic 55.0%
! GAGAGTAGTGGTGGTGTGTG+TGG + chr7_1:38136082-38136101 Msa1018210:CDS 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG + chr7_1:38137001-38137020 Msa1018210:CDS 55.0%
TTGAGGAGGGTGGAAAGAGG+TGG - chr7_1:38135401-38135420 None:intergenic 55.0%
! CACACTGGTGTTGAGGCTGT+TGG - chr7_1:38135455-38135474 None:intergenic 55.0%
! GTCATGGCACACTGGTGTTG+AGG - chr7_1:38135462-38135481 None:intergenic 55.0%
CCACATGTGTCATGGCACAC+TGG - chr7_1:38135470-38135489 None:intergenic 55.0%
CCAGTGTGCCATGACACATG+TGG + chr7_1:38135467-38135486 Msa1018210:CDS 55.0%
CAACCAGGACCTGTGCCAAA+AGG - chr7_1:38135512-38135531 None:intergenic 55.0%
TTTGGCACAGGTCCTGGTTG+CGG + chr7_1:38135512-38135531 Msa1018210:CDS 55.0%
! AATAGTGGGGATCCGCAACC+AGG - chr7_1:38135527-38135546 None:intergenic 55.0%
GGGTGGTGTGAGTATGAGAG+TGG - chr7_1:38135651-38135670 None:intergenic 55.0%
! GAGAGTAGTGGTGGTGTGTG+TGG + chr7_1:38136082-38136101 Msa1018210:CDS 55.0%
! GTCTGGAGTTCCATCTTGGC+TGG + chr7_1:38137001-38137020 Msa1018210:CDS 55.0%
TACTCACCGGGGAACCTCGA+CGG + chr7_1:38135896-38135915 Msa1018210:CDS 60.0%
GTGTGTGGATACGCTCCTCC+AGG + chr7_1:38136097-38136116 Msa1018210:CDS 60.0%
GGATACGCTCCTCCAGGAAG+TGG + chr7_1:38136103-38136122 Msa1018210:CDS 60.0%
GGCAGTCAGTGCCCAAAGCT+CGG + chr7_1:38137259-38137278 Msa1018210:three_prime_UTR 60.0%
GCAGTCAGTGCCCAAAGCTC+GGG + chr7_1:38137260-38137279 Msa1018210:three_prime_UTR 60.0%
CCTGCGTATGCCCGAGCTTT+GGG - chr7_1:38137273-38137292 None:intergenic 60.0%
CCAAAGCTCGGGCATACGCA+GGG + chr7_1:38137271-38137290 Msa1018210:three_prime_UTR 60.0%
! TGCGTCAAGGCTCCCCCTTT+TGG + chr7_1:38137396-38137415 Msa1018210:three_prime_UTR 60.0%
TACTCACCGGGGAACCTCGA+CGG + chr7_1:38135896-38135915 Msa1018210:CDS 60.0%
GTGTGTGGATACGCTCCTCC+AGG + chr7_1:38136097-38136116 Msa1018210:CDS 60.0%
GGATACGCTCCTCCAGGAAG+TGG + chr7_1:38136103-38136122 Msa1018210:CDS 60.0%
GGCAGTCAGTGCCCAAAGCT+CGG + chr7_1:38137259-38137278 Msa1018210:three_prime_UTR 60.0%
GCAGTCAGTGCCCAAAGCTC+GGG + chr7_1:38137260-38137279 Msa1018210:three_prime_UTR 60.0%
CCTGCGTATGCCCGAGCTTT+GGG - chr7_1:38137273-38137292 None:intergenic 60.0%
CCAAAGCTCGGGCATACGCA+GGG + chr7_1:38137271-38137290 Msa1018210:three_prime_UTR 60.0%
! TGCGTCAAGGCTCCCCCTTT+TGG + chr7_1:38137396-38137415 Msa1018210:three_prime_UTR 60.0%
TCAAGTCCCCGTTGCCGTCG+AGG - chr7_1:38135913-38135932 None:intergenic 65.0%
CCCAAAGCTCGGGCATACGC+AGG + chr7_1:38137270-38137289 Msa1018210:three_prime_UTR 65.0%
CCCTGCGTATGCCCGAGCTT+TGG - chr7_1:38137274-38137293 None:intergenic 65.0%
CTCGGGCATACGCAGGGTCT+GGG + chr7_1:38137277-38137296 Msa1018210:three_prime_UTR 65.0%
TCAAGTCCCCGTTGCCGTCG+AGG - chr7_1:38135913-38135932 None:intergenic 65.0%
CCCAAAGCTCGGGCATACGC+AGG + chr7_1:38137270-38137289 Msa1018210:three_prime_UTR 65.0%
CCCTGCGTATGCCCGAGCTT+TGG - chr7_1:38137274-38137293 None:intergenic 65.0%
CTCGGGCATACGCAGGGTCT+GGG + chr7_1:38137277-38137296 Msa1018210:three_prime_UTR 65.0%
CCGTTGCCGTCGAGGTTCCC+CGG - chr7_1:38135905-38135924 None:intergenic 70.0%
CCGGGGAACCTCGACGGCAA+CGG + chr7_1:38135902-38135921 Msa1018210:CDS 70.0%
CGGGGAACCTCGACGGCAAC+GGG + chr7_1:38135903-38135922 Msa1018210:CDS 70.0%
GGGGAACCTCGACGGCAACG+GGG + chr7_1:38135904-38135923 Msa1018210:CDS 70.0%
GCTCGGGCATACGCAGGGTC+TGG + chr7_1:38137276-38137295 Msa1018210:three_prime_UTR 70.0%
CCGTTGCCGTCGAGGTTCCC+CGG - chr7_1:38135905-38135924 None:intergenic 70.0%
CCGGGGAACCTCGACGGCAA+CGG + chr7_1:38135902-38135921 Msa1018210:CDS 70.0%
CGGGGAACCTCGACGGCAAC+GGG + chr7_1:38135903-38135922 Msa1018210:CDS 70.0%
GGGGAACCTCGACGGCAACG+GGG + chr7_1:38135904-38135923 Msa1018210:CDS 70.0%
GCTCGGGCATACGCAGGGTC+TGG + chr7_1:38137276-38137295 Msa1018210:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 38135358 38137506 38135358 ID=Msa1018210;Name=Msa1018210
chr7_1 mRNA 38135358 38137506 38135358 ID=Msa1018210-mRNA-1;Parent=Msa1018210;Name=Msa1018210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=19|1|1|1|1|1|2|461|303
chr7_1 exon 38135358 38136235 38135358 ID=Msa1018210-mRNA-1:exon:7339;Parent=Msa1018210-mRNA-1
chr7_1 exon 38136993 38137506 38136993 ID=Msa1018210-mRNA-1:exon:7340;Parent=Msa1018210-mRNA-1
chr7_1 five_prime_UTR 38135358 38135376 38135358 ID=Msa1018210-mRNA-1:five_prime_utr;Parent=Msa1018210-mRNA-1
chr7_1 CDS 38135377 38136235 38135377 ID=Msa1018210-mRNA-1:cds;Parent=Msa1018210-mRNA-1
chr7_1 CDS 38136993 38137045 38136993 ID=Msa1018210-mRNA-1:cds;Parent=Msa1018210-mRNA-1
chr7_1 three_prime_UTR 38137046 38137506 38137046 ID=Msa1018210-mRNA-1:three_prime_utr;Parent=Msa1018210-mRNA-1
Gene Sequence

>Msa1018210

ATGGCACTACCACTACTACTACCACCTCTTTCCACCCTCCTCAACTTCTTCATGATCCTCCTCTTAGCATCTCTACCAACAGCCTCAACACCAGTGTGCCATGACACATGTGGCTCAATACAAGTCAAGTATCCTTTTGGCACAGGTCCTGGTTGCGGATCCCCACTATTCAACCCATACATAACATGCACATCAAACGGAACATTAGACCAACTCATCCTTAAAACTCAAACATTCTCATACCCTATAACCTCCATTTCATACACCACTTCCACTCTCATACTCACACCACCCTACATGTCTACTTGCACTGCCATGCAAACCTCACCAAACTTTGGCATAGACTTAACTGCACCATTCCAAATATCTTCCTCCACTTTCATCCTCCTCTCTTGCCAAGAAAAAAGTTCAACCATTTGTGACACTTCTTTTGATTACCTTTGTGCTTCTCTTTACTCTTGCCCTCAAGTAGTCTCACTTGGTATGCCTCTTTTTTCTCCTACTAACACATGTTGTGTATACTCACCGGGGAACCTCGACGGCAACGGGGACTTGAATCTTAGAGAGAATGATTGTAGTAGTTATACTTCGGTTGTATCACTTGATGATAACCCTACCGATCCTACTCATTGGGTTTGTGGCGTGGCATTGAAATATAGTCATGGTGCTTTTGATAACTTTGCGACCACTAAATGTACTAGTTGTGAGAGTAGTGGTGGTGTGTGTGGATACGCTCCTCCAGGAAGTGGATTTGTTTGTGTTTGTAAAGGTGGATTTAATACCAGCCTTGATTGCTCTAATTACGATCAAAACCAGGATTTCCTTTGGGACTCTGTATCTCCTCCTCCCATGTACAACATTGGGAATGTCTGGAGTTCCATCTTGGCTGGTATCATTTTCAGCCTAGTGTAA

Protein sequence

>Msa1018210

MALPLLLPPLSTLLNFFMILLLASLPTASTPVCHDTCGSIQVKYPFGTGPGCGSPLFNPYITCTSNGTLDQLILKTQTFSYPITSISYTTSTLILTPPYMSTCTAMQTSPNFGIDLTAPFQISSSTFILLSCQEKSSTICDTSFDYLCASLYSCPQVVSLGMPLFSPTNTCCVYSPGNLDGNGDLNLRENDCSSYTSVVSLDDNPTDPTHWVCGVALKYSHGAFDNFATTKCTSCESSGGVCGYAPPGSGFVCVCKGGFNTSLDCSNYDQNQDFLWDSVSPPPMYNIGNVWSSILAGIIFSLV*