Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791780 | sp|Q9FUJ1|CKX7_ARATH | 59.403 | 335 | 120 | 4 | 1 | 319 | 1 | 335 | 7.14e-132 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791780 | A0A4Y5UJA3 | 99.062 | 320 | 3 | 0 | 1 | 320 | 1 | 320 | 0.0 | 657 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa0791780 | 0.801323 | 9.504912e-49 | -8.615850e-47 |
| Msa0007810 | Msa0791780 | 0.800036 | 1.739886e-48 | -8.615850e-47 |
| Msa0030050 | Msa0791780 | -0.837284 | 5.693077e-57 | -8.615850e-47 |
| Msa0072570 | Msa0791780 | -0.802178 | 6.344978e-49 | -8.615850e-47 |
| Msa0081700 | Msa0791780 | 0.819195 | 1.319645e-52 | -8.615850e-47 |
| Msa0091300 | Msa0791780 | 0.811015 | 8.649154e-51 | -8.615850e-47 |
| Msa0098500 | Msa0791780 | 0.806716 | 7.185728e-50 | -8.615850e-47 |
| Msa0099090 | Msa0791780 | 0.819372 | 1.202045e-52 | -8.615850e-47 |
| Msa0099350 | Msa0791780 | 0.975667 | 2.243135e-140 | -8.615850e-47 |
| Msa0099430 | Msa0791780 | 0.975519 | 4.218503e-140 | -8.615850e-47 |
| Msa0617470 | Msa0791780 | 0.813020 | 3.162159e-51 | -8.615850e-47 |
| Msa0622930 | Msa0791780 | 0.802190 | 6.310923e-49 | -8.615850e-47 |
| Msa0654400 | Msa0791780 | 0.839459 | 1.564594e-57 | -8.615850e-47 |
| Msa0654500 | Msa0791780 | 0.806872 | 6.659923e-50 | -8.615850e-47 |
| Msa0672090 | Msa0791780 | -0.809867 | 1.530086e-50 | -8.615850e-47 |
| Msa0690100 | Msa0791780 | 0.800730 | 1.256599e-48 | -8.615850e-47 |
| Msa0700250 | Msa0791780 | 0.804080 | 2.564496e-49 | -8.615850e-47 |
| Msa0701800 | Msa0791780 | 0.802583 | 5.237857e-49 | -8.615850e-47 |
| Msa0779830 | Msa0791780 | 0.803969 | 2.704262e-49 | -8.615850e-47 |
| Msa0791780 | Msa0826380 | -0.807134 | 5.862957e-50 | -8.615850e-47 |
| Msa0791780 | Msa0869320 | 0.815332 | 9.759633e-52 | -8.615850e-47 |
| Msa0791780 | Msa0870220 | 0.822460 | 2.341419e-53 | -8.615850e-47 |
| Msa0791780 | Msa0903460 | 0.832249 | 1.052757e-55 | -8.615850e-47 |
| Msa0791780 | Msa0934290 | 0.812746 | 3.629590e-51 | -8.615850e-47 |
| Msa0791780 | Msa0935930 | 0.836093 | 1.145461e-56 | -8.615850e-47 |
| Msa0791780 | Msa0956600 | 0.808812 | 2.576818e-50 | -8.615850e-47 |
| Msa0791780 | Msa0971780 | 0.816469 | 5.441160e-52 | -8.615850e-47 |
| Msa0791780 | Msa0972930 | 0.818633 | 1.770434e-52 | -8.615850e-47 |
| Msa0791780 | Msa1011140 | 0.807508 | 4.883776e-50 | -8.615850e-47 |
| Msa0791780 | Msa1014550 | 0.814553 | 1.452820e-51 | -8.615850e-47 |
| Msa0791780 | Msa1016450 | 0.824952 | 6.108252e-54 | -8.615850e-47 |
| Msa0791780 | Msa1018210 | 0.850602 | 1.526964e-60 | -8.615850e-47 |
| Msa0791780 | Msa1055520 | 0.817266 | 3.604543e-52 | -8.615850e-47 |
| Msa0791780 | Msa1057940 | 0.843582 | 1.282391e-58 | -8.615850e-47 |
| Msa0791780 | Msa1104020 | 0.811817 | 5.790754e-51 | -8.615850e-47 |
| Msa0791780 | Msa1134430 | 0.808717 | 2.699711e-50 | -8.615850e-47 |
| Msa0791780 | Msa1134480 | 0.806246 | 9.030186e-50 | -8.615850e-47 |
| Msa0791780 | Msa1213470 | 0.809202 | 2.125693e-50 | -8.615850e-47 |
| Msa0791780 | Msa1219530 | 0.815644 | 8.316118e-52 | -8.615850e-47 |
| Msa0791780 | Msa1300370 | 0.808841 | 2.540323e-50 | -8.615850e-47 |
| Msa0791780 | Msa1305970 | 0.804548 | 2.049249e-49 | -8.615850e-47 |
| Msa0791780 | Msa1333220 | 0.800051 | 1.727623e-48 | -8.615850e-47 |
| Msa0791780 | Msa1363310 | 0.840614 | 7.818126e-58 | -8.615850e-47 |
| Msa0791780 | Msa1384410 | 0.845578 | 3.721491e-59 | -8.615850e-47 |
| Msa0791780 | Msa1386580 | 0.839444 | 1.578456e-57 | -8.615850e-47 |
| Msa0791780 | Msa1389670 | 0.815482 | 9.038472e-52 | -8.615850e-47 |
| Msa0791780 | Msa1409360 | 0.815832 | 7.552546e-52 | -8.615850e-47 |
| Msa0791780 | Msa1459130 | 0.807607 | 4.654829e-50 | -8.615850e-47 |
| Msa0791780 | Msa1464470 | 0.805920 | 1.057239e-49 | -8.615850e-47 |
| Msa0127220 | Msa0791780 | 0.808933 | 2.427352e-50 | -8.615850e-47 |
| Msa0127910 | Msa0791780 | 0.830686 | 2.553450e-55 | -8.615850e-47 |
| Msa0148000 | Msa0791780 | 0.939681 | 8.444120e-100 | -8.615850e-47 |
| Msa0174060 | Msa0791780 | 0.821200 | 4.581811e-53 | -8.615850e-47 |
| Msa0379530 | Msa0791780 | 0.805542 | 1.269773e-49 | -8.615850e-47 |
| Msa0390590 | Msa0791780 | 0.827851 | 1.244947e-54 | -8.615850e-47 |
| Msa0404210 | Msa0791780 | 0.803650 | 3.151023e-49 | -8.615850e-47 |
| Msa0412480 | Msa0791780 | 0.806472 | 8.091739e-50 | -8.615850e-47 |
| Msa0475390 | Msa0791780 | 0.802849 | 4.616021e-49 | -8.615850e-47 |
| Msa0259670 | Msa0791780 | 0.805543 | 1.269117e-49 | -8.615850e-47 |
| Msa0341490 | Msa0791780 | 0.810008 | 1.426693e-50 | -8.615850e-47 |
| Msa0362440 | Msa0791780 | 0.820490 | 6.673978e-53 | -8.615850e-47 |
| Msa0502900 | Msa0791780 | 0.801079 | 1.066442e-48 | -8.615850e-47 |
| Msa0526520 | Msa0791780 | 0.838647 | 2.539463e-57 | -8.615850e-47 |
| Msa0533610 | Msa0791780 | 0.831758 | 1.391784e-55 | -8.615850e-47 |
| Msa0545750 | Msa0791780 | 0.804252 | 2.361447e-49 | -8.615850e-47 |
| Msa0546880 | Msa0791780 | -0.813301 | 2.743600e-51 | -8.615850e-47 |
| Msa0559440 | Msa0791780 | 0.811633 | 6.349751e-51 | -8.615850e-47 |
| Msa0569980 | Msa0791780 | 0.802926 | 4.448131e-49 | -8.615850e-47 |
| Msa0571900 | Msa0791780 | 0.832649 | 8.382473e-56 | -8.615850e-47 |
| Msa0588880 | Msa0791780 | -0.819237 | 1.290669e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791780 | MtrunA17_Chr1g0150941 | 97.188 | 320 | 9 | 0 | 1 | 320 | 1 | 320 | 0.0 | 648 |
| Msa0791780 | MtrunA17_Chr7g0257061 | 47.682 | 302 | 134 | 8 | 18 | 306 | 49 | 339 | 1.02e-87 | 273 |
| Msa0791780 | MtrunA17_Chr3g0091141 | 47.945 | 292 | 132 | 7 | 37 | 320 | 81 | 360 | 2.74e-84 | 264 |
| Msa0791780 | MtrunA17_Chr4g0020621 | 47.122 | 278 | 129 | 5 | 37 | 306 | 57 | 324 | 2.88e-83 | 261 |
| Msa0791780 | MtrunA17_Chr3g0141981 | 48.929 | 280 | 130 | 8 | 37 | 308 | 57 | 331 | 9.43e-74 | 236 |
| Msa0791780 | MtrunA17_Chr4g0071111 | 41.368 | 307 | 151 | 9 | 17 | 306 | 37 | 331 | 4.11e-70 | 226 |
| Msa0791780 | MtrunA17_Chr2g0299371 | 43.686 | 293 | 138 | 7 | 36 | 306 | 53 | 340 | 4.41e-70 | 227 |
| Msa0791780 | MtrunA17_Chr4g0071121 | 43.902 | 287 | 141 | 9 | 35 | 311 | 52 | 328 | 6.49e-67 | 218 |
| Msa0791780 | MtrunA17_Chr2g0299351 | 36.453 | 203 | 104 | 5 | 1 | 187 | 16 | 209 | 1.79e-30 | 115 |
| Msa0791780 | MtrunA17_Chr2g0299361 | 39.080 | 87 | 41 | 1 | 180 | 266 | 6 | 80 | 4.71e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791780 | AT5G21482.1 | 59.403 | 335 | 120 | 4 | 1 | 319 | 1 | 335 | 7.26e-133 | 388 |
| Msa0791780 | AT2G41510.3 | 48.227 | 282 | 133 | 6 | 37 | 313 | 76 | 349 | 6.38e-86 | 265 |
| Msa0791780 | AT2G41510.1 | 48.399 | 281 | 132 | 6 | 38 | 313 | 77 | 349 | 1.93e-84 | 265 |
| Msa0791780 | AT2G41510.2 | 48.399 | 281 | 132 | 6 | 38 | 313 | 139 | 411 | 5.73e-84 | 266 |
| Msa0791780 | AT3G63440.1 | 47.687 | 281 | 129 | 6 | 37 | 308 | 60 | 331 | 1.12e-82 | 259 |
| Msa0791780 | AT1G75450.1 | 49.135 | 289 | 133 | 10 | 29 | 309 | 44 | 326 | 2.29e-77 | 246 |
| Msa0791780 | AT1G75450.2 | 48.966 | 290 | 133 | 11 | 29 | 309 | 40 | 323 | 1.30e-75 | 241 |
| Msa0791780 | AT5G56970.2 | 42.391 | 276 | 153 | 4 | 37 | 311 | 58 | 328 | 7.04e-69 | 221 |
| Msa0791780 | AT5G56970.1 | 42.391 | 276 | 153 | 4 | 37 | 311 | 58 | 328 | 1.15e-67 | 220 |
| Msa0791780 | AT4G29740.3 | 39.744 | 312 | 166 | 7 | 11 | 309 | 29 | 331 | 1.61e-65 | 211 |
| Msa0791780 | AT2G19500.1 | 45.923 | 233 | 120 | 3 | 35 | 266 | 43 | 270 | 6.20e-65 | 213 |
| Msa0791780 | AT4G29740.1 | 39.617 | 313 | 167 | 7 | 10 | 309 | 28 | 331 | 2.53e-64 | 209 |
| Msa0791780 | AT4G29740.2 | 41.319 | 288 | 150 | 6 | 35 | 309 | 50 | 331 | 6.94e-63 | 208 |
Find 111 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAACCGGGTTGAAAATT+TGG | 0.149145 | 5_3:+2823979 | None:intergenic |
| TCTTTACTAGCGATGGAATT+AGG | 0.152257 | 5_3:+2824921 | None:intergenic |
| ATAATTTGAATTACCATATC+TGG | 0.190405 | 5_3:+2824351 | None:intergenic |
| CGCCATGGCTTGGCCGTTGA+TGG | 0.241138 | 5_3:+2824767 | None:intergenic |
| ACGTTTCCGGTGGGGCATTA+TGG | 0.267117 | 5_3:-2824662 | Msa0791780:CDS |
| TTTGCTTCACTTGGTGGTCT+TGG | 0.275872 | 5_3:-2824420 | Msa0791780:CDS |
| CTTTACTAGCGATGGAATTA+GGG | 0.278545 | 5_3:+2824922 | None:intergenic |
| GTTCCACACGTCGACGTTTC+CGG | 0.291921 | 5_3:-2824675 | Msa0791780:CDS |
| GGTAAGCTATCATGTTTGTT+TGG | 0.300397 | 5_3:+2825027 | None:intergenic |
| TACCTTGAACACTTCGTTCA+TGG | 0.302711 | 5_3:-2825008 | Msa0791780:CDS |
| GGCTTGTTGAAGAACGATTC+TGG | 0.324479 | 5_3:+2824374 | None:intergenic |
| ACCACATCGGCGGTGGTGTA+AGG | 0.326905 | 5_3:+2824855 | None:intergenic |
| AACGGCAAACGTAACGGAAT+TGG | 0.333855 | 5_3:-2824505 | Msa0791780:CDS |
| CGTTTCCGGTGGGGCATTAT+GGG | 0.338199 | 5_3:-2824661 | Msa0791780:CDS |
| GTTTGTCTTCCTTCTTCAGC+TGG | 0.347023 | 5_3:-2823963 | Msa0791780:CDS |
| GCGGAGTACGGCGAGGGGAG+TGG | 0.353548 | 5_3:+2824878 | None:intergenic |
| TCCGTTACGTTTGCCGTTTG+AGG | 0.363428 | 5_3:+2824510 | None:intergenic |
| CTTGGTGGTCTTGGTCAGTT+TGG | 0.364537 | 5_3:-2824411 | Msa0791780:CDS |
| GTAAGCTATCATGTTTGTTT+GGG | 0.372447 | 5_3:+2825028 | None:intergenic |
| TAATCAAAACCGTCACCTTC+TGG | 0.374704 | 5_3:+2824074 | None:intergenic |
| ACGGAATTGGAAGTTGTTAC+TGG | 0.376042 | 5_3:-2824492 | Msa0791780:CDS |
| CGCCGCCACTGTTAAATTTG+TGG | 0.405726 | 5_3:+2824806 | None:intergenic |
| GTCCTTTCTCCGCCATGGCT+TGG | 0.407600 | 5_3:+2824757 | None:intergenic |
| AGGTCGTGGACGGATTATCT+TGG | 0.416052 | 5_3:-2824594 | Msa0791780:CDS |
| AGAGATGAAACGTCGTCGTT+TGG | 0.424313 | 5_3:+2824966 | None:intergenic |
| TTCCATGAACGAAGTGTTCA+AGG | 0.426707 | 5_3:+2825006 | None:intergenic |
| TAATTTGAATTACCATATCT+GGG | 0.427257 | 5_3:+2824352 | None:intergenic |
| TTGGAAGTTGTTACTGGTAA+AGG | 0.428929 | 5_3:-2824486 | Msa0791780:CDS |
| TGTGAAATGAAGAAGAGTTT+CGG | 0.429316 | 5_3:+2825054 | None:intergenic |
| TCTTCCTTCTTCAGCTGGAC+CGG | 0.429397 | 5_3:-2823958 | Msa0791780:CDS |
| GGTGATTTACTCGGAATTTG+AGG | 0.430629 | 5_3:-2824132 | Msa0791780:CDS |
| CGATGGAATTAGGGGCGAAA+TGG | 0.432931 | 5_3:+2824931 | None:intergenic |
| AGTGGTCAGACTTTCCGTTA+TGG | 0.435886 | 5_3:-2824534 | Msa0791780:CDS |
| GCTGAAGAAGGAAGACAAAC+CGG | 0.448502 | 5_3:+2823966 | None:intergenic |
| AATTATAGGTGAGGTGGATG+AGG | 0.449429 | 5_3:-2824154 | Msa0791780:intron |
| TTCGAACCCATCGGAATTGT+GGG | 0.454639 | 5_3:+2824002 | None:intergenic |
| GTTCGAACCCATCGGAATTG+TGG | 0.455887 | 5_3:+2824001 | None:intergenic |
| TTAAGCTTGTTCCGAGGTCG+TGG | 0.462870 | 5_3:-2824608 | Msa0791780:CDS |
| TCTTCAACAAGCCCCAGATA+TGG | 0.463973 | 5_3:-2824364 | Msa0791780:intron |
| GGTCGTGGACGGATTATCTT+GGG | 0.467250 | 5_3:-2824593 | Msa0791780:CDS |
| GGGCGAAATGGAAAGAAGAT+TGG | 0.474103 | 5_3:+2824943 | None:intergenic |
| TACTAAAGATGCAGAGTGGC+TGG | 0.476282 | 5_3:-2824105 | Msa0791780:CDS |
| GGCCAAGCCATGGCGGAGAA+AGG | 0.478685 | 5_3:-2824759 | Msa0791780:CDS |
| TTCAGTTAAAAGGGAAGCTA+CGG | 0.483363 | 5_3:+2825081 | None:intergenic |
| AGCTCTAAGCAATAGAGAAC+CGG | 0.488364 | 5_3:+2823939 | None:intergenic |
| GATTATCTTGGGTTGACGGT+GGG | 0.491823 | 5_3:-2824582 | Msa0791780:CDS |
| GATGAAACGTCGTCGTTTGG+TGG | 0.497366 | 5_3:+2824969 | None:intergenic |
| TCCATCGCTAGTAAAGACTT+TGG | 0.502870 | 5_3:-2824915 | Msa0791780:CDS |
| TCGATCTTCTGAAGTTAATA+CGG | 0.504348 | 5_3:-2823892 | Msa0791780:CDS |
| CCACATCGGCGGTGGTGTAA+GGG | 0.506838 | 5_3:+2824856 | None:intergenic |
| GCCAAAGTCTTTACTAGCGA+TGG | 0.507471 | 5_3:+2824914 | None:intergenic |
| TATCTTGGGTTGACGGTGGG+TGG | 0.508422 | 5_3:-2824579 | Msa0791780:CDS |
| ACAGTGGCGGCGCGTGGTAA+CGG | 0.517231 | 5_3:-2824795 | Msa0791780:CDS |
| TTGCCGTTTGAGGACCATAA+CGG | 0.518469 | 5_3:+2824520 | None:intergenic |
| GCTTGTTCCGAGGTCGTGGA+CGG | 0.521292 | 5_3:-2824604 | Msa0791780:CDS |
| GGTGGTGTAAGGGCGGAGTA+CGG | 0.523423 | 5_3:+2824866 | None:intergenic |
| GTGATTAATTATAGGTGAGG+TGG | 0.525879 | 5_3:-2824160 | Msa0791780:intron |
| GACAAGTCCTTTCTCCGCCA+TGG | 0.527704 | 5_3:+2824752 | None:intergenic |
| AACAATGACGACCCTTGTAA+TGG | 0.528629 | 5_3:-2824029 | Msa0791780:CDS |
| TTTCCGTTATGGTCCTCAAA+CGG | 0.538238 | 5_3:-2824523 | Msa0791780:CDS |
| TCCTCAAACGGCAAACGTAA+CGG | 0.539282 | 5_3:-2824511 | Msa0791780:CDS |
| GTAAGGGCGGAGTACGGCGA+GGG | 0.539751 | 5_3:+2824872 | None:intergenic |
| ATTGTGGGCCAACCATTACA+AGG | 0.542464 | 5_3:+2824017 | None:intergenic |
| GACGGATTATCTTGGGTTGA+CGG | 0.542938 | 5_3:-2824586 | Msa0791780:CDS |
| CGCCACTGTTAAATTTGTGG+TGG | 0.542938 | 5_3:+2824809 | None:intergenic |
| CTCCATCAACGGCCAAGCCA+TGG | 0.544156 | 5_3:-2824769 | Msa0791780:CDS |
| ATTATAGGTGAGGTGGATGA+GGG | 0.546580 | 5_3:-2824153 | Msa0791780:intron |
| TGGTTGGCCCACAATTCCGA+TGG | 0.547575 | 5_3:-2824009 | Msa0791780:CDS |
| CGACATGCGAGCCACGGCGG+AGG | 0.549400 | 5_3:-2824727 | Msa0791780:CDS |
| AGATAATCCGTCCACGACCT+CGG | 0.550163 | 5_3:+2824597 | None:intergenic |
| GAGTACGGCGAGGGGAGTGG+AGG | 0.555436 | 5_3:+2824881 | None:intergenic |
| CACACGTCGACGTTTCCGGT+GGG | 0.555761 | 5_3:-2824671 | Msa0791780:CDS |
| GGATTATCTTGGGTTGACGG+TGG | 0.555995 | 5_3:-2824583 | Msa0791780:CDS |
| AGAACCGGTCCAGCTGAAGA+AGG | 0.557947 | 5_3:+2823954 | None:intergenic |
| AAAATTTGGTTCGAACCCAT+CGG | 0.558165 | 5_3:+2823993 | None:intergenic |
| CCGCCGTGGCTCGCATGTCG+AGG | 0.560775 | 5_3:+2824730 | None:intergenic |
| CCCTTACACCACCGCCGATG+TGG | 0.562433 | 5_3:-2824856 | Msa0791780:CDS |
| CTGAAGAAGGAAGACAAACC+GGG | 0.562836 | 5_3:+2823967 | None:intergenic |
| ATGACGACCCTTGTAATGGT+TGG | 0.566251 | 5_3:-2824025 | Msa0791780:CDS |
| TCGACGTAGAGAAGTTGAAA+AGG | 0.566784 | 5_3:+2824702 | None:intergenic |
| ATCGCTAGTAAAGACTTTGG+CGG | 0.568106 | 5_3:-2824912 | Msa0791780:CDS |
| TTTCAACTTCTCTACGTCGA+CGG | 0.568492 | 5_3:-2824699 | Msa0791780:CDS |
| CCACACGTCGACGTTTCCGG+TGG | 0.571833 | 5_3:-2824672 | Msa0791780:CDS |
| CACCACAAATTTAACAGTGG+CGG | 0.573395 | 5_3:-2824808 | Msa0791780:CDS |
| AATTTAACAGTGGCGGCGCG+TGG | 0.576208 | 5_3:-2824801 | Msa0791780:CDS |
| TTCTTCCCATAATGCCCCAC+CGG | 0.584444 | 5_3:+2824656 | None:intergenic |
| GTGGATGAGGGTGATTTACT+CGG | 0.585431 | 5_3:-2824141 | Msa0791780:CDS |
| TTATCTAACGCCGGTGTCAG+TGG | 0.591550 | 5_3:-2824552 | Msa0791780:CDS |
| CCACCGGAAACGTCGACGTG+TGG | 0.593175 | 5_3:+2824672 | None:intergenic |
| ACACGTCGACGTTTCCGGTG+GGG | 0.596713 | 5_3:-2824670 | Msa0791780:CDS |
| TAAGGGCGGAGTACGGCGAG+GGG | 0.607594 | 5_3:+2824873 | None:intergenic |
| AATTTGAATTACCATATCTG+GGG | 0.615221 | 5_3:+2824353 | None:intergenic |
| GAAAGTCTGACCACTGACAC+CGG | 0.615663 | 5_3:+2824542 | None:intergenic |
| TGTCCTCGACATGCGAGCCA+CGG | 0.617094 | 5_3:-2824733 | Msa0791780:CDS |
| GGTAACGGTCACTCCATCAA+CGG | 0.617798 | 5_3:-2824780 | Msa0791780:CDS |
| GGTTTGAGAAGCAAGTGAAG+TGG | 0.619946 | 5_3:+2825129 | None:intergenic |
| TGTAAGGGCGGAGTACGGCG+AGG | 0.621289 | 5_3:+2824871 | None:intergenic |
| GGTTGGCCCACAATTCCGAT+GGG | 0.621310 | 5_3:-2824008 | Msa0791780:CDS |
| TTGAAAAGGCTCCTCCGCCG+TGG | 0.646401 | 5_3:+2824716 | None:intergenic |
| CATCGGCGGTGGTGTAAGGG+CGG | 0.651775 | 5_3:+2824859 | None:intergenic |
| TTTACTAGCGATGGAATTAG+GGG | 0.652593 | 5_3:+2824923 | None:intergenic |
| GGTGGAACTTTATCTAACGC+CGG | 0.664301 | 5_3:-2824561 | Msa0791780:CDS |
| CATCAACGGCCAAGCCATGG+CGG | 0.679836 | 5_3:-2824766 | Msa0791780:CDS |
| CCTCGACATGCGAGCCACGG+CGG | 0.681570 | 5_3:-2824730 | Msa0791780:CDS |
| TTACGTGGAAGGGTTCGTTG+TGG | 0.686031 | 5_3:-2824054 | Msa0791780:CDS |
| TGGCTGGTGACACTACCAGA+AGG | 0.701936 | 5_3:-2824089 | Msa0791780:CDS |
| ATTAACTTCAGAAGATCGAG+CGG | 0.709501 | 5_3:+2823896 | None:intergenic |
| GTGACACTACCAGAAGGTGA+CGG | 0.718693 | 5_3:-2824083 | Msa0791780:CDS |
| TTGTGGGCCAACCATTACAA+GGG | 0.722239 | 5_3:+2824018 | None:intergenic |
| AACCACCACAAATTTAACAG+TGG | 0.724117 | 5_3:-2824811 | Msa0791780:CDS |
| ACTATACTAAAGATGCAGAG+TGG | 0.735948 | 5_3:-2824109 | Msa0791780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATTAAAAAAACAAAT+GGG | + | chr5_3:2825106-2825125 | None:intergenic | 10.0% |
| !! | AAAAAGATTAAAAAAACAAA+TGG | + | chr5_3:2825107-2825126 | None:intergenic | 10.0% |
| !! | AAAAGATTAAAAAAACAAAT+GGG | + | chr5_3:2825106-2825125 | None:intergenic | 10.0% |
| !! | AAAAAGATTAAAAAAACAAA+TGG | + | chr5_3:2825107-2825126 | None:intergenic | 10.0% |
| !!! | AAATCTTTGTTATTATTGTA+TGG | - | chr5_3:2824710-2824729 | Msa0791780:CDS | 15.0% |
| !!! | TTTGATTTTGATTTTGATTT+TGG | - | chr5_3:2824752-2824771 | Msa0791780:CDS | 15.0% |
| !!! | TTGATTTTGATTTTGATTTT+GGG | - | chr5_3:2824753-2824772 | Msa0791780:CDS | 15.0% |
| !!! | AAATCTTTGTTATTATTGTA+TGG | - | chr5_3:2824710-2824729 | Msa0791780:CDS | 15.0% |
| !!! | TTTGATTTTGATTTTGATTT+TGG | - | chr5_3:2824752-2824771 | Msa0791780:CDS | 15.0% |
| !!! | TTGATTTTGATTTTGATTTT+GGG | - | chr5_3:2824753-2824772 | Msa0791780:CDS | 15.0% |
| !! | TAATTTGAATTACCATATCT+GGG | + | chr5_3:2824587-2824606 | None:intergenic | 20.0% |
| !! | ATAATTTGAATTACCATATC+TGG | + | chr5_3:2824588-2824607 | None:intergenic | 20.0% |
| !!! | TGATTTTGATTTTGATTTTG+GGG | - | chr5_3:2824754-2824773 | Msa0791780:CDS | 20.0% |
| !! | TAATTTGAATTACCATATCT+GGG | + | chr5_3:2824587-2824606 | None:intergenic | 20.0% |
| !! | ATAATTTGAATTACCATATC+TGG | + | chr5_3:2824588-2824607 | None:intergenic | 20.0% |
| !!! | TGATTTTGATTTTGATTTTG+GGG | - | chr5_3:2824754-2824773 | Msa0791780:CDS | 20.0% |
| !! | GTTTTATGTTTGAAGAGTTT+GGG | + | chr5_3:2823831-2823850 | None:intergenic | 25.0% |
| !!! | TTCGGTTTTTTCAGTTAAAA+GGG | + | chr5_3:2823867-2823886 | None:intergenic | 25.0% |
| !!! | TTTCGGTTTTTTCAGTTAAA+AGG | + | chr5_3:2823868-2823887 | None:intergenic | 25.0% |
| ! | AATTTGAATTACCATATCTG+GGG | + | chr5_3:2824586-2824605 | None:intergenic | 25.0% |
| !!! | ATTTTGGGGTGATTAATTAT+AGG | - | chr5_3:2824768-2824787 | Msa0791780:CDS | 25.0% |
| !! | GTTTTATGTTTGAAGAGTTT+GGG | + | chr5_3:2823831-2823850 | None:intergenic | 25.0% |
| !!! | TTCGGTTTTTTCAGTTAAAA+GGG | + | chr5_3:2823867-2823886 | None:intergenic | 25.0% |
| !!! | TTTCGGTTTTTTCAGTTAAA+AGG | + | chr5_3:2823868-2823887 | None:intergenic | 25.0% |
| ! | AATTTGAATTACCATATCTG+GGG | + | chr5_3:2824586-2824605 | None:intergenic | 25.0% |
| !!! | ATTTTGGGGTGATTAATTAT+AGG | - | chr5_3:2824768-2824787 | Msa0791780:CDS | 25.0% |
| ! | CGTTTTATGTTTGAAGAGTT+TGG | + | chr5_3:2823832-2823851 | None:intergenic | 30.0% |
| TGTGAAATGAAGAAGAGTTT+CGG | + | chr5_3:2823885-2823904 | None:intergenic | 30.0% | |
| GTAAGCTATCATGTTTGTTT+GGG | + | chr5_3:2823911-2823930 | None:intergenic | 30.0% | |
| CAAGTAAGTTTAAATGAGTC+CGG | - | chr5_3:2824678-2824697 | Msa0791780:CDS | 30.0% | |
| ACAAAGATTTGACATATGTC+CGG | + | chr5_3:2824700-2824719 | None:intergenic | 30.0% | |
| ! | GTATGGAGTAGTTTATGTTT+TGG | - | chr5_3:2824727-2824746 | Msa0791780:CDS | 30.0% |
| !! | TCGATCTTCTGAAGTTAATA+CGG | - | chr5_3:2825044-2825063 | Msa0791780:five_prime_UTR | 30.0% |
| ! | CGTTTTATGTTTGAAGAGTT+TGG | + | chr5_3:2823832-2823851 | None:intergenic | 30.0% |
| TGTGAAATGAAGAAGAGTTT+CGG | + | chr5_3:2823885-2823904 | None:intergenic | 30.0% | |
| GTAAGCTATCATGTTTGTTT+GGG | + | chr5_3:2823911-2823930 | None:intergenic | 30.0% | |
| CAAGTAAGTTTAAATGAGTC+CGG | - | chr5_3:2824678-2824697 | Msa0791780:CDS | 30.0% | |
| ACAAAGATTTGACATATGTC+CGG | + | chr5_3:2824700-2824719 | None:intergenic | 30.0% | |
| ! | GTATGGAGTAGTTTATGTTT+TGG | - | chr5_3:2824727-2824746 | Msa0791780:CDS | 30.0% |
| !! | TCGATCTTCTGAAGTTAATA+CGG | - | chr5_3:2825044-2825063 | Msa0791780:five_prime_UTR | 30.0% |
| TTCAGTTAAAAGGGAAGCTA+CGG | + | chr5_3:2823858-2823877 | None:intergenic | 35.0% | |
| GGTAAGCTATCATGTTTGTT+TGG | + | chr5_3:2823912-2823931 | None:intergenic | 35.0% | |
| TTTACTAGCGATGGAATTAG+GGG | + | chr5_3:2824016-2824035 | None:intergenic | 35.0% | |
| CTTTACTAGCGATGGAATTA+GGG | + | chr5_3:2824017-2824036 | None:intergenic | 35.0% | |
| TCTTTACTAGCGATGGAATT+AGG | + | chr5_3:2824018-2824037 | None:intergenic | 35.0% | |
| ! | TTTTACGGCTTTTACCACAT+CGG | + | chr5_3:2824097-2824116 | None:intergenic | 35.0% |
| AACCACCACAAATTTAACAG+TGG | - | chr5_3:2824125-2824144 | Msa0791780:CDS | 35.0% | |
| TTGGAAGTTGTTACTGGTAA+AGG | - | chr5_3:2824450-2824469 | Msa0791780:CDS | 35.0% | |
| GTGATTAATTATAGGTGAGG+TGG | - | chr5_3:2824776-2824795 | Msa0791780:CDS | 35.0% | |
| ACTATACTAAAGATGCAGAG+TGG | - | chr5_3:2824827-2824846 | Msa0791780:CDS | 35.0% | |
| ! | AAAATTTGGTTCGAACCCAT+CGG | + | chr5_3:2824946-2824965 | None:intergenic | 35.0% |
| ! | TTCGAACCAAATTTTCAACC+CGG | - | chr5_3:2824951-2824970 | Msa0791780:CDS | 35.0% |
| ATTAACTTCAGAAGATCGAG+CGG | + | chr5_3:2825043-2825062 | None:intergenic | 35.0% | |
| TTCAGTTAAAAGGGAAGCTA+CGG | + | chr5_3:2823858-2823877 | None:intergenic | 35.0% | |
| GGTAAGCTATCATGTTTGTT+TGG | + | chr5_3:2823912-2823931 | None:intergenic | 35.0% | |
| TTTACTAGCGATGGAATTAG+GGG | + | chr5_3:2824016-2824035 | None:intergenic | 35.0% | |
| CTTTACTAGCGATGGAATTA+GGG | + | chr5_3:2824017-2824036 | None:intergenic | 35.0% | |
| TCTTTACTAGCGATGGAATT+AGG | + | chr5_3:2824018-2824037 | None:intergenic | 35.0% | |
| ! | TTTTACGGCTTTTACCACAT+CGG | + | chr5_3:2824097-2824116 | None:intergenic | 35.0% |
| AACCACCACAAATTTAACAG+TGG | - | chr5_3:2824125-2824144 | Msa0791780:CDS | 35.0% | |
| TTGGAAGTTGTTACTGGTAA+AGG | - | chr5_3:2824450-2824469 | Msa0791780:CDS | 35.0% | |
| GTGATTAATTATAGGTGAGG+TGG | - | chr5_3:2824776-2824795 | Msa0791780:CDS | 35.0% | |
| ACTATACTAAAGATGCAGAG+TGG | - | chr5_3:2824827-2824846 | Msa0791780:CDS | 35.0% | |
| ! | AAAATTTGGTTCGAACCCAT+CGG | + | chr5_3:2824946-2824965 | None:intergenic | 35.0% |
| ! | TTCGAACCAAATTTTCAACC+CGG | - | chr5_3:2824951-2824970 | Msa0791780:CDS | 35.0% |
| ATTAACTTCAGAAGATCGAG+CGG | + | chr5_3:2825043-2825062 | None:intergenic | 35.0% | |
| TACCTTGAACACTTCGTTCA+TGG | - | chr5_3:2823928-2823947 | Msa0791780:CDS | 40.0% | |
| ! | TTCCATGAACGAAGTGTTCA+AGG | + | chr5_3:2823933-2823952 | None:intergenic | 40.0% |
| TCCATCGCTAGTAAAGACTT+TGG | - | chr5_3:2824021-2824040 | Msa0791780:CDS | 40.0% | |
| ATCGCTAGTAAAGACTTTGG+CGG | - | chr5_3:2824024-2824043 | Msa0791780:CDS | 40.0% | |
| CACCACAAATTTAACAGTGG+CGG | - | chr5_3:2824128-2824147 | Msa0791780:CDS | 40.0% | |
| TCGACGTAGAGAAGTTGAAA+AGG | + | chr5_3:2824237-2824256 | None:intergenic | 40.0% | |
| TTTCAACTTCTCTACGTCGA+CGG | - | chr5_3:2824237-2824256 | Msa0791780:intron | 40.0% | |
| !! | CGAATTTTAAGCTTGTTCCG+AGG | - | chr5_3:2824322-2824341 | Msa0791780:intron | 40.0% |
| TTTCCGTTATGGTCCTCAAA+CGG | - | chr5_3:2824413-2824432 | Msa0791780:CDS | 40.0% | |
| ACGGAATTGGAAGTTGTTAC+TGG | - | chr5_3:2824444-2824463 | Msa0791780:CDS | 40.0% | |
| !!! | GAGCTCTTTTTTGCTTCACT+TGG | - | chr5_3:2824507-2824526 | Msa0791780:CDS | 40.0% |
| !!! | CTCTTTTTTGCTTCACTTGG+TGG | - | chr5_3:2824510-2824529 | Msa0791780:CDS | 40.0% |
| GGGGTGATTAATTATAGGTG+AGG | - | chr5_3:2824773-2824792 | Msa0791780:CDS | 40.0% | |
| AATTATAGGTGAGGTGGATG+AGG | - | chr5_3:2824782-2824801 | Msa0791780:CDS | 40.0% | |
| ATTATAGGTGAGGTGGATGA+GGG | - | chr5_3:2824783-2824802 | Msa0791780:CDS | 40.0% | |
| GGTGATTTACTCGGAATTTG+AGG | - | chr5_3:2824804-2824823 | Msa0791780:CDS | 40.0% | |
| TAATCAAAACCGTCACCTTC+TGG | + | chr5_3:2824865-2824884 | None:intergenic | 40.0% | |
| !!! | ACGGTTTTGATTACGTGGAA+GGG | - | chr5_3:2824872-2824891 | Msa0791780:CDS | 40.0% |
| AACAATGACGACCCTTGTAA+TGG | - | chr5_3:2824907-2824926 | Msa0791780:CDS | 40.0% | |
| ! | GACAAACCGGGTTGAAAATT+TGG | + | chr5_3:2824960-2824979 | None:intergenic | 40.0% |
| !! | AGCTCTAAGCAATAGAGAAC+CGG | + | chr5_3:2825000-2825019 | None:intergenic | 40.0% |
| TACCTTGAACACTTCGTTCA+TGG | - | chr5_3:2823928-2823947 | Msa0791780:CDS | 40.0% | |
| ! | TTCCATGAACGAAGTGTTCA+AGG | + | chr5_3:2823933-2823952 | None:intergenic | 40.0% |
| TCCATCGCTAGTAAAGACTT+TGG | - | chr5_3:2824021-2824040 | Msa0791780:CDS | 40.0% | |
| ATCGCTAGTAAAGACTTTGG+CGG | - | chr5_3:2824024-2824043 | Msa0791780:CDS | 40.0% | |
| CACCACAAATTTAACAGTGG+CGG | - | chr5_3:2824128-2824147 | Msa0791780:CDS | 40.0% | |
| TCGACGTAGAGAAGTTGAAA+AGG | + | chr5_3:2824237-2824256 | None:intergenic | 40.0% | |
| TTTCAACTTCTCTACGTCGA+CGG | - | chr5_3:2824237-2824256 | Msa0791780:intron | 40.0% | |
| !! | CGAATTTTAAGCTTGTTCCG+AGG | - | chr5_3:2824322-2824341 | Msa0791780:intron | 40.0% |
| TTTCCGTTATGGTCCTCAAA+CGG | - | chr5_3:2824413-2824432 | Msa0791780:CDS | 40.0% | |
| ACGGAATTGGAAGTTGTTAC+TGG | - | chr5_3:2824444-2824463 | Msa0791780:CDS | 40.0% | |
| !!! | GAGCTCTTTTTTGCTTCACT+TGG | - | chr5_3:2824507-2824526 | Msa0791780:CDS | 40.0% |
| !!! | CTCTTTTTTGCTTCACTTGG+TGG | - | chr5_3:2824510-2824529 | Msa0791780:CDS | 40.0% |
| GGGGTGATTAATTATAGGTG+AGG | - | chr5_3:2824773-2824792 | Msa0791780:CDS | 40.0% | |
| AATTATAGGTGAGGTGGATG+AGG | - | chr5_3:2824782-2824801 | Msa0791780:CDS | 40.0% | |
| ATTATAGGTGAGGTGGATGA+GGG | - | chr5_3:2824783-2824802 | Msa0791780:CDS | 40.0% | |
| GGTGATTTACTCGGAATTTG+AGG | - | chr5_3:2824804-2824823 | Msa0791780:CDS | 40.0% | |
| TAATCAAAACCGTCACCTTC+TGG | + | chr5_3:2824865-2824884 | None:intergenic | 40.0% | |
| !!! | ACGGTTTTGATTACGTGGAA+GGG | - | chr5_3:2824872-2824891 | Msa0791780:CDS | 40.0% |
| AACAATGACGACCCTTGTAA+TGG | - | chr5_3:2824907-2824926 | Msa0791780:CDS | 40.0% | |
| ! | GACAAACCGGGTTGAAAATT+TGG | + | chr5_3:2824960-2824979 | None:intergenic | 40.0% |
| !! | AGCTCTAAGCAATAGAGAAC+CGG | + | chr5_3:2825000-2825019 | None:intergenic | 40.0% |
| GGTTTGAGAAGCAAGTGAAG+TGG | + | chr5_3:2823810-2823829 | None:intergenic | 45.0% | |
| AGAGATGAAACGTCGTCGTT+TGG | + | chr5_3:2823973-2823992 | None:intergenic | 45.0% | |
| GGGCGAAATGGAAAGAAGAT+TGG | + | chr5_3:2823996-2824015 | None:intergenic | 45.0% | |
| GCCAAAGTCTTTACTAGCGA+TGG | + | chr5_3:2824025-2824044 | None:intergenic | 45.0% | |
| CGCCACTGTTAAATTTGTGG+TGG | + | chr5_3:2824130-2824149 | None:intergenic | 45.0% | |
| !! | GACGGATTATCTTGGGTTGA+CGG | - | chr5_3:2824350-2824369 | Msa0791780:intron | 45.0% |
| !! | GATTATCTTGGGTTGACGGT+GGG | - | chr5_3:2824354-2824373 | Msa0791780:intron | 45.0% |
| GGTGGAACTTTATCTAACGC+CGG | - | chr5_3:2824375-2824394 | Msa0791780:CDS | 45.0% | |
| AGTGGTCAGACTTTCCGTTA+TGG | - | chr5_3:2824402-2824421 | Msa0791780:CDS | 45.0% | |
| ! | TTGCCGTTTGAGGACCATAA+CGG | + | chr5_3:2824419-2824438 | None:intergenic | 45.0% |
| TCCTCAAACGGCAAACGTAA+CGG | - | chr5_3:2824425-2824444 | Msa0791780:CDS | 45.0% | |
| ! | AACGGCAAACGTAACGGAAT+TGG | - | chr5_3:2824431-2824450 | Msa0791780:CDS | 45.0% |
| ! | TTTGCTTCACTTGGTGGTCT+TGG | - | chr5_3:2824516-2824535 | Msa0791780:CDS | 45.0% |
| !! | GGCTTGTTGAAGAACGATTC+TGG | + | chr5_3:2824565-2824584 | None:intergenic | 45.0% |
| TCTTCAACAAGCCCCAGATA+TGG | - | chr5_3:2824572-2824591 | Msa0791780:CDS | 45.0% | |
| GTGGATGAGGGTGATTTACT+CGG | - | chr5_3:2824795-2824814 | Msa0791780:CDS | 45.0% | |
| TACTAAAGATGCAGAGTGGC+TGG | - | chr5_3:2824831-2824850 | Msa0791780:CDS | 45.0% | |
| !!! | AGGTGACGGTTTTGATTACG+TGG | - | chr5_3:2824867-2824886 | Msa0791780:CDS | 45.0% |
| !!! | GACGGTTTTGATTACGTGGA+AGG | - | chr5_3:2824871-2824890 | Msa0791780:CDS | 45.0% |
| ATGACGACCCTTGTAATGGT+TGG | - | chr5_3:2824911-2824930 | Msa0791780:CDS | 45.0% | |
| TTGTGGGCCAACCATTACAA+GGG | + | chr5_3:2824921-2824940 | None:intergenic | 45.0% | |
| ATTGTGGGCCAACCATTACA+AGG | + | chr5_3:2824922-2824941 | None:intergenic | 45.0% | |
| TTCGAACCCATCGGAATTGT+GGG | + | chr5_3:2824937-2824956 | None:intergenic | 45.0% | |
| CTGAAGAAGGAAGACAAACC+GGG | + | chr5_3:2824972-2824991 | None:intergenic | 45.0% | |
| GCTGAAGAAGGAAGACAAAC+CGG | + | chr5_3:2824973-2824992 | None:intergenic | 45.0% | |
| GTTTGTCTTCCTTCTTCAGC+TGG | - | chr5_3:2824973-2824992 | Msa0791780:CDS | 45.0% | |
| GGTTTGAGAAGCAAGTGAAG+TGG | + | chr5_3:2823810-2823829 | None:intergenic | 45.0% | |
| AGAGATGAAACGTCGTCGTT+TGG | + | chr5_3:2823973-2823992 | None:intergenic | 45.0% | |
| GGGCGAAATGGAAAGAAGAT+TGG | + | chr5_3:2823996-2824015 | None:intergenic | 45.0% | |
| GCCAAAGTCTTTACTAGCGA+TGG | + | chr5_3:2824025-2824044 | None:intergenic | 45.0% | |
| CGCCACTGTTAAATTTGTGG+TGG | + | chr5_3:2824130-2824149 | None:intergenic | 45.0% | |
| !! | GACGGATTATCTTGGGTTGA+CGG | - | chr5_3:2824350-2824369 | Msa0791780:intron | 45.0% |
| !! | GATTATCTTGGGTTGACGGT+GGG | - | chr5_3:2824354-2824373 | Msa0791780:intron | 45.0% |
| GGTGGAACTTTATCTAACGC+CGG | - | chr5_3:2824375-2824394 | Msa0791780:CDS | 45.0% | |
| AGTGGTCAGACTTTCCGTTA+TGG | - | chr5_3:2824402-2824421 | Msa0791780:CDS | 45.0% | |
| ! | TTGCCGTTTGAGGACCATAA+CGG | + | chr5_3:2824419-2824438 | None:intergenic | 45.0% |
| TCCTCAAACGGCAAACGTAA+CGG | - | chr5_3:2824425-2824444 | Msa0791780:CDS | 45.0% | |
| ! | AACGGCAAACGTAACGGAAT+TGG | - | chr5_3:2824431-2824450 | Msa0791780:CDS | 45.0% |
| ! | TTTGCTTCACTTGGTGGTCT+TGG | - | chr5_3:2824516-2824535 | Msa0791780:CDS | 45.0% |
| !! | GGCTTGTTGAAGAACGATTC+TGG | + | chr5_3:2824565-2824584 | None:intergenic | 45.0% |
| TCTTCAACAAGCCCCAGATA+TGG | - | chr5_3:2824572-2824591 | Msa0791780:CDS | 45.0% | |
| GTGGATGAGGGTGATTTACT+CGG | - | chr5_3:2824795-2824814 | Msa0791780:CDS | 45.0% | |
| TACTAAAGATGCAGAGTGGC+TGG | - | chr5_3:2824831-2824850 | Msa0791780:CDS | 45.0% | |
| !!! | AGGTGACGGTTTTGATTACG+TGG | - | chr5_3:2824867-2824886 | Msa0791780:CDS | 45.0% |
| !!! | GACGGTTTTGATTACGTGGA+AGG | - | chr5_3:2824871-2824890 | Msa0791780:CDS | 45.0% |
| ATGACGACCCTTGTAATGGT+TGG | - | chr5_3:2824911-2824930 | Msa0791780:CDS | 45.0% | |
| TTGTGGGCCAACCATTACAA+GGG | + | chr5_3:2824921-2824940 | None:intergenic | 45.0% | |
| ATTGTGGGCCAACCATTACA+AGG | + | chr5_3:2824922-2824941 | None:intergenic | 45.0% | |
| TTCGAACCCATCGGAATTGT+GGG | + | chr5_3:2824937-2824956 | None:intergenic | 45.0% | |
| CTGAAGAAGGAAGACAAACC+GGG | + | chr5_3:2824972-2824991 | None:intergenic | 45.0% | |
| GCTGAAGAAGGAAGACAAAC+CGG | + | chr5_3:2824973-2824992 | None:intergenic | 45.0% | |
| GTTTGTCTTCCTTCTTCAGC+TGG | - | chr5_3:2824973-2824992 | Msa0791780:CDS | 45.0% | |
| GATGAAACGTCGTCGTTTGG+TGG | + | chr5_3:2823970-2823989 | None:intergenic | 50.0% | |
| CGATGGAATTAGGGGCGAAA+TGG | + | chr5_3:2824008-2824027 | None:intergenic | 50.0% | |
| ! | TACGGCTTTTACCACATCGG+CGG | + | chr5_3:2824094-2824113 | None:intergenic | 50.0% |
| !!! | GGTGGTTGCTGCTGCTTTTA+CGG | + | chr5_3:2824112-2824131 | None:intergenic | 50.0% |
| CGCCGCCACTGTTAAATTTG+TGG | + | chr5_3:2824133-2824152 | None:intergenic | 50.0% | |
| ! | GGTAACGGTCACTCCATCAA+CGG | - | chr5_3:2824156-2824175 | Msa0791780:intron | 50.0% |
| TTCTTCCCATAATGCCCCAC+CGG | + | chr5_3:2824283-2824302 | None:intergenic | 50.0% | |
| ! | TTAAGCTTGTTCCGAGGTCG+TGG | - | chr5_3:2824328-2824347 | Msa0791780:intron | 50.0% |
| AGATAATCCGTCCACGACCT+CGG | + | chr5_3:2824342-2824361 | None:intergenic | 50.0% | |
| !! | AGGTCGTGGACGGATTATCT+TGG | - | chr5_3:2824342-2824361 | Msa0791780:intron | 50.0% |
| !! | GGTCGTGGACGGATTATCTT+GGG | - | chr5_3:2824343-2824362 | Msa0791780:intron | 50.0% |
| !! | GGATTATCTTGGGTTGACGG+TGG | - | chr5_3:2824353-2824372 | Msa0791780:intron | 50.0% |
| ! | TTATCTAACGCCGGTGTCAG+TGG | - | chr5_3:2824384-2824403 | Msa0791780:CDS | 50.0% |
| GAAAGTCTGACCACTGACAC+CGG | + | chr5_3:2824397-2824416 | None:intergenic | 50.0% | |
| ! | TCCGTTACGTTTGCCGTTTG+AGG | + | chr5_3:2824429-2824448 | None:intergenic | 50.0% |
| ! | CTTGGTGGTCTTGGTCAGTT+TGG | - | chr5_3:2824525-2824544 | Msa0791780:CDS | 50.0% |
| GTGACACTACCAGAAGGTGA+CGG | - | chr5_3:2824853-2824872 | Msa0791780:CDS | 50.0% | |
| TTACGTGGAAGGGTTCGTTG+TGG | - | chr5_3:2824882-2824901 | Msa0791780:CDS | 50.0% | |
| GTTCGAACCCATCGGAATTG+TGG | + | chr5_3:2824938-2824957 | None:intergenic | 50.0% | |
| TCTTCCTTCTTCAGCTGGAC+CGG | - | chr5_3:2824978-2824997 | Msa0791780:CDS | 50.0% | |
| GATGAAACGTCGTCGTTTGG+TGG | + | chr5_3:2823970-2823989 | None:intergenic | 50.0% | |
| CGATGGAATTAGGGGCGAAA+TGG | + | chr5_3:2824008-2824027 | None:intergenic | 50.0% | |
| ! | TACGGCTTTTACCACATCGG+CGG | + | chr5_3:2824094-2824113 | None:intergenic | 50.0% |
| !!! | GGTGGTTGCTGCTGCTTTTA+CGG | + | chr5_3:2824112-2824131 | None:intergenic | 50.0% |
| CGCCGCCACTGTTAAATTTG+TGG | + | chr5_3:2824133-2824152 | None:intergenic | 50.0% | |
| ! | GGTAACGGTCACTCCATCAA+CGG | - | chr5_3:2824156-2824175 | Msa0791780:intron | 50.0% |
| TTCTTCCCATAATGCCCCAC+CGG | + | chr5_3:2824283-2824302 | None:intergenic | 50.0% | |
| ! | TTAAGCTTGTTCCGAGGTCG+TGG | - | chr5_3:2824328-2824347 | Msa0791780:intron | 50.0% |
| AGATAATCCGTCCACGACCT+CGG | + | chr5_3:2824342-2824361 | None:intergenic | 50.0% | |
| !! | AGGTCGTGGACGGATTATCT+TGG | - | chr5_3:2824342-2824361 | Msa0791780:intron | 50.0% |
| !! | GGTCGTGGACGGATTATCTT+GGG | - | chr5_3:2824343-2824362 | Msa0791780:intron | 50.0% |
| !! | GGATTATCTTGGGTTGACGG+TGG | - | chr5_3:2824353-2824372 | Msa0791780:intron | 50.0% |
| ! | TTATCTAACGCCGGTGTCAG+TGG | - | chr5_3:2824384-2824403 | Msa0791780:CDS | 50.0% |
| GAAAGTCTGACCACTGACAC+CGG | + | chr5_3:2824397-2824416 | None:intergenic | 50.0% | |
| ! | TCCGTTACGTTTGCCGTTTG+AGG | + | chr5_3:2824429-2824448 | None:intergenic | 50.0% |
| ! | CTTGGTGGTCTTGGTCAGTT+TGG | - | chr5_3:2824525-2824544 | Msa0791780:CDS | 50.0% |
| GTGACACTACCAGAAGGTGA+CGG | - | chr5_3:2824853-2824872 | Msa0791780:CDS | 50.0% | |
| TTACGTGGAAGGGTTCGTTG+TGG | - | chr5_3:2824882-2824901 | Msa0791780:CDS | 50.0% | |
| GTTCGAACCCATCGGAATTG+TGG | + | chr5_3:2824938-2824957 | None:intergenic | 50.0% | |
| TCTTCCTTCTTCAGCTGGAC+CGG | - | chr5_3:2824978-2824997 | Msa0791780:CDS | 50.0% | |
| AATTTAACAGTGGCGGCGCG+TGG | - | chr5_3:2824135-2824154 | Msa0791780:CDS | 55.0% | |
| GACAAGTCCTTTCTCCGCCA+TGG | + | chr5_3:2824187-2824206 | None:intergenic | 55.0% | |
| GTTCCACACGTCGACGTTTC+CGG | - | chr5_3:2824261-2824280 | Msa0791780:intron | 55.0% | |
| ! | ACGTTTCCGGTGGGGCATTA+TGG | - | chr5_3:2824274-2824293 | Msa0791780:intron | 55.0% |
| ! | CGTTTCCGGTGGGGCATTAT+GGG | - | chr5_3:2824275-2824294 | Msa0791780:intron | 55.0% |
| !! | TATCTTGGGTTGACGGTGGG+TGG | - | chr5_3:2824357-2824376 | Msa0791780:intron | 55.0% |
| TGGCTGGTGACACTACCAGA+AGG | - | chr5_3:2824847-2824866 | Msa0791780:CDS | 55.0% | |
| ! | TGGTTGGCCCACAATTCCGA+TGG | - | chr5_3:2824927-2824946 | Msa0791780:CDS | 55.0% |
| ! | GGTTGGCCCACAATTCCGAT+GGG | - | chr5_3:2824928-2824947 | Msa0791780:CDS | 55.0% |
| AGAACCGGTCCAGCTGAAGA+AGG | + | chr5_3:2824985-2825004 | None:intergenic | 55.0% | |
| AATTTAACAGTGGCGGCGCG+TGG | - | chr5_3:2824135-2824154 | Msa0791780:CDS | 55.0% | |
| GACAAGTCCTTTCTCCGCCA+TGG | + | chr5_3:2824187-2824206 | None:intergenic | 55.0% | |
| GTTCCACACGTCGACGTTTC+CGG | - | chr5_3:2824261-2824280 | Msa0791780:intron | 55.0% | |
| ! | ACGTTTCCGGTGGGGCATTA+TGG | - | chr5_3:2824274-2824293 | Msa0791780:intron | 55.0% |
| ! | CGTTTCCGGTGGGGCATTAT+GGG | - | chr5_3:2824275-2824294 | Msa0791780:intron | 55.0% |
| !! | TATCTTGGGTTGACGGTGGG+TGG | - | chr5_3:2824357-2824376 | Msa0791780:intron | 55.0% |
| TGGCTGGTGACACTACCAGA+AGG | - | chr5_3:2824847-2824866 | Msa0791780:CDS | 55.0% | |
| ! | TGGTTGGCCCACAATTCCGA+TGG | - | chr5_3:2824927-2824946 | Msa0791780:CDS | 55.0% |
| ! | GGTTGGCCCACAATTCCGAT+GGG | - | chr5_3:2824928-2824947 | Msa0791780:CDS | 55.0% |
| AGAACCGGTCCAGCTGAAGA+AGG | + | chr5_3:2824985-2825004 | None:intergenic | 55.0% | |
| GGTGGTGTAAGGGCGGAGTA+CGG | + | chr5_3:2824073-2824092 | None:intergenic | 60.0% | |
| CCACATCGGCGGTGGTGTAA+GGG | + | chr5_3:2824083-2824102 | None:intergenic | 60.0% | |
| ACCACATCGGCGGTGGTGTA+AGG | + | chr5_3:2824084-2824103 | None:intergenic | 60.0% | |
| ! | GGCTTTTACCACATCGGCGG+TGG | + | chr5_3:2824091-2824110 | None:intergenic | 60.0% |
| CTCCATCAACGGCCAAGCCA+TGG | - | chr5_3:2824167-2824186 | Msa0791780:intron | 60.0% | |
| CATCAACGGCCAAGCCATGG+CGG | - | chr5_3:2824170-2824189 | Msa0791780:intron | 60.0% | |
| GTCCTTTCTCCGCCATGGCT+TGG | + | chr5_3:2824182-2824201 | None:intergenic | 60.0% | |
| TGTCCTCGACATGCGAGCCA+CGG | - | chr5_3:2824203-2824222 | Msa0791780:intron | 60.0% | |
| TTGAAAAGGCTCCTCCGCCG+TGG | + | chr5_3:2824223-2824242 | None:intergenic | 60.0% | |
| CACACGTCGACGTTTCCGGT+GGG | - | chr5_3:2824265-2824284 | Msa0791780:intron | 60.0% | |
| ACACGTCGACGTTTCCGGTG+GGG | - | chr5_3:2824266-2824285 | Msa0791780:intron | 60.0% | |
| GCTTGTTCCGAGGTCGTGGA+CGG | - | chr5_3:2824332-2824351 | Msa0791780:intron | 60.0% | |
| GGTGGTGTAAGGGCGGAGTA+CGG | + | chr5_3:2824073-2824092 | None:intergenic | 60.0% | |
| CCACATCGGCGGTGGTGTAA+GGG | + | chr5_3:2824083-2824102 | None:intergenic | 60.0% | |
| ACCACATCGGCGGTGGTGTA+AGG | + | chr5_3:2824084-2824103 | None:intergenic | 60.0% | |
| ! | GGCTTTTACCACATCGGCGG+TGG | + | chr5_3:2824091-2824110 | None:intergenic | 60.0% |
| CTCCATCAACGGCCAAGCCA+TGG | - | chr5_3:2824167-2824186 | Msa0791780:intron | 60.0% | |
| CATCAACGGCCAAGCCATGG+CGG | - | chr5_3:2824170-2824189 | Msa0791780:intron | 60.0% | |
| GTCCTTTCTCCGCCATGGCT+TGG | + | chr5_3:2824182-2824201 | None:intergenic | 60.0% | |
| TGTCCTCGACATGCGAGCCA+CGG | - | chr5_3:2824203-2824222 | Msa0791780:intron | 60.0% | |
| TTGAAAAGGCTCCTCCGCCG+TGG | + | chr5_3:2824223-2824242 | None:intergenic | 60.0% | |
| CACACGTCGACGTTTCCGGT+GGG | - | chr5_3:2824265-2824284 | Msa0791780:intron | 60.0% | |
| ACACGTCGACGTTTCCGGTG+GGG | - | chr5_3:2824266-2824285 | Msa0791780:intron | 60.0% | |
| GCTTGTTCCGAGGTCGTGGA+CGG | - | chr5_3:2824332-2824351 | Msa0791780:intron | 60.0% | |
| TAAGGGCGGAGTACGGCGAG+GGG | + | chr5_3:2824066-2824085 | None:intergenic | 65.0% | |
| GTAAGGGCGGAGTACGGCGA+GGG | + | chr5_3:2824067-2824086 | None:intergenic | 65.0% | |
| TGTAAGGGCGGAGTACGGCG+AGG | + | chr5_3:2824068-2824087 | None:intergenic | 65.0% | |
| CATCGGCGGTGGTGTAAGGG+CGG | + | chr5_3:2824080-2824099 | None:intergenic | 65.0% | |
| CCCTTACACCACCGCCGATG+TGG | - | chr5_3:2824080-2824099 | Msa0791780:CDS | 65.0% | |
| ACAGTGGCGGCGCGTGGTAA+CGG | - | chr5_3:2824141-2824160 | Msa0791780:CDS | 65.0% | |
| ! | CGCCATGGCTTGGCCGTTGA+TGG | + | chr5_3:2824172-2824191 | None:intergenic | 65.0% |
| ! | GGCCAAGCCATGGCGGAGAA+AGG | - | chr5_3:2824177-2824196 | Msa0791780:intron | 65.0% |
| CCACCGGAAACGTCGACGTG+TGG | + | chr5_3:2824267-2824286 | None:intergenic | 65.0% | |
| CCACACGTCGACGTTTCCGG+TGG | - | chr5_3:2824264-2824283 | Msa0791780:intron | 65.0% | |
| TAAGGGCGGAGTACGGCGAG+GGG | + | chr5_3:2824066-2824085 | None:intergenic | 65.0% | |
| GTAAGGGCGGAGTACGGCGA+GGG | + | chr5_3:2824067-2824086 | None:intergenic | 65.0% | |
| TGTAAGGGCGGAGTACGGCG+AGG | + | chr5_3:2824068-2824087 | None:intergenic | 65.0% | |
| CATCGGCGGTGGTGTAAGGG+CGG | + | chr5_3:2824080-2824099 | None:intergenic | 65.0% | |
| CCCTTACACCACCGCCGATG+TGG | - | chr5_3:2824080-2824099 | Msa0791780:CDS | 65.0% | |
| ACAGTGGCGGCGCGTGGTAA+CGG | - | chr5_3:2824141-2824160 | Msa0791780:CDS | 65.0% | |
| ! | CGCCATGGCTTGGCCGTTGA+TGG | + | chr5_3:2824172-2824191 | None:intergenic | 65.0% |
| ! | GGCCAAGCCATGGCGGAGAA+AGG | - | chr5_3:2824177-2824196 | Msa0791780:intron | 65.0% |
| CCACCGGAAACGTCGACGTG+TGG | + | chr5_3:2824267-2824286 | None:intergenic | 65.0% | |
| CCACACGTCGACGTTTCCGG+TGG | - | chr5_3:2824264-2824283 | Msa0791780:intron | 65.0% | |
| GAGTACGGCGAGGGGAGTGG+AGG | + | chr5_3:2824058-2824077 | None:intergenic | 70.0% | |
| CCTCGACATGCGAGCCACGG+CGG | - | chr5_3:2824206-2824225 | Msa0791780:intron | 70.0% | |
| GAGTACGGCGAGGGGAGTGG+AGG | + | chr5_3:2824058-2824077 | None:intergenic | 70.0% | |
| CCTCGACATGCGAGCCACGG+CGG | - | chr5_3:2824206-2824225 | Msa0791780:intron | 70.0% | |
| GCGGAGTACGGCGAGGGGAG+TGG | + | chr5_3:2824061-2824080 | None:intergenic | 75.0% | |
| CCGCCGTGGCTCGCATGTCG+AGG | + | chr5_3:2824209-2824228 | None:intergenic | 75.0% | |
| CGACATGCGAGCCACGGCGG+AGG | - | chr5_3:2824209-2824228 | Msa0791780:intron | 75.0% | |
| GCGGAGTACGGCGAGGGGAG+TGG | + | chr5_3:2824061-2824080 | None:intergenic | 75.0% | |
| CCGCCGTGGCTCGCATGTCG+AGG | + | chr5_3:2824209-2824228 | None:intergenic | 75.0% | |
| CGACATGCGAGCCACGGCGG+AGG | - | chr5_3:2824209-2824228 | Msa0791780:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2823807 | 2825151 | 2823807 | ID=Msa0791780;Name=Msa0791780 |
| chr5_3 | mRNA | 2823807 | 2825151 | 2823807 | ID=Msa0791780-mRNA-1;Parent=Msa0791780;Name=Msa0791780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=112|1|1|1|1|1|2|74|320 |
| chr5_3 | exon | 2823807 | 2824168 | 2823807 | ID=Msa0791780-mRNA-1:exon:1203;Parent=Msa0791780-mRNA-1 |
| chr5_3 | exon | 2824365 | 2825151 | 2824365 | ID=Msa0791780-mRNA-1:exon:1202;Parent=Msa0791780-mRNA-1 |
| chr5_3 | five_prime_UTR | 2825040 | 2825151 | 2825040 | ID=Msa0791780-mRNA-1:five_prime_utr;Parent=Msa0791780-mRNA-1 |
| chr5_3 | CDS | 2824365 | 2825039 | 2824365 | ID=Msa0791780-mRNA-1:cds;Parent=Msa0791780-mRNA-1 |
| chr5_3 | CDS | 2823881 | 2824168 | 2823881 | ID=Msa0791780-mRNA-1:cds;Parent=Msa0791780-mRNA-1 |
| chr5_3 | three_prime_UTR | 2823807 | 2823880 | 2823807 | ID=Msa0791780-mRNA-1:three_prime_utr;Parent=Msa0791780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
