AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0513080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0513080 MtrunA17_Chr3g0119541 96.409 362 13 0 1 362 1 362 0.0 704
Msa0513080 MtrunA17_Chr5g0439251 73.977 342 89 0 20 361 19 360 0.0 530
Msa0513080 MtrunA17_Chr1g0177171 66.361 327 110 0 22 348 34 360 3.19e-158 453
Msa0513080 MtrunA17_Chr1g0189111 49.091 330 164 4 19 347 24 350 2.24e-101 305
Msa0513080 MtrunA17_Chr4g0043851 44.875 361 189 5 3 362 11 362 3.11e-101 304
Msa0513080 MtrunA17_Chr4g0026321 47.164 335 165 5 22 353 25 350 6.70e-101 303
Msa0513080 MtrunA17_Chr2g0321511 43.750 336 184 3 9 343 12 343 2.35e-95 289
Msa0513080 MtrunA17_Chr4g0003281 44.986 349 186 4 4 351 20 363 9.32e-95 288
Msa0513080 MtrunA17_Chr8g0389741 42.424 330 189 1 20 349 22 350 9.04e-94 288
Msa0513080 MtrunA17_Chr2g0285901 45.614 342 178 6 7 343 1 339 1.35e-93 285
Msa0513080 MtrunA17_Chr6g0487261 41.143 350 204 2 1 349 1 349 1.39e-91 283
Msa0513080 MtrunA17_Chr7g0234821 43.925 321 175 4 27 343 27 346 1.58e-91 281
Msa0513080 MtrunA17_Chr1g0146831 44.242 330 177 4 15 342 20 344 3.71e-91 278
Msa0513080 MtrunA17_Chr4g0034901 42.982 342 188 4 4 343 10 346 9.80e-90 277
Msa0513080 MtrunA17_Chr1g0161011 41.714 350 199 3 4 349 1 349 1.10e-89 278
Msa0513080 MtrunA17_Chr8g0339191 40.698 344 199 4 4 343 7 349 1.08e-88 274
Msa0513080 MtrunA17_Chr3g0110371 42.210 353 194 4 1 349 3 349 3.19e-88 274
Msa0513080 MtrunA17_Chr4g0046311 39.595 346 202 3 7 346 4 348 2.64e-87 271
Msa0513080 MtrunA17_Chr3g0144531 42.945 326 183 3 20 343 21 345 8.59e-87 269
Msa0513080 MtrunA17_Chr4g0075031 40.449 356 193 4 4 341 8 362 1.80e-85 268
Msa0513080 MtrunA17_Chr4g0064021 43.125 320 180 2 27 345 27 345 2.49e-85 263
Msa0513080 MtrunA17_Chr1g0155001 42.812 320 180 3 26 343 24 342 3.12e-85 264
Msa0513080 MtrunA17_Chr5g0434591 41.964 336 186 3 1 333 3 332 1.75e-83 262
Msa0513080 MtrunA17_Chr3g0121271 38.415 328 197 3 23 346 23 349 1.99e-81 256
Msa0513080 MtrunA17_Chr7g0223961 43.302 321 173 6 24 342 21 334 4.63e-81 254
Msa0513080 MtrunA17_Chr4g0043511 44.118 340 179 8 26 362 62 393 9.58e-81 256
Msa0513080 MtrunA17_Chr4g0039071 42.679 321 177 4 23 343 22 335 4.13e-80 249
Msa0513080 MtrunA17_Chr8g0378621 37.971 345 203 3 4 345 11 347 3.35e-78 248
Msa0513080 MtrunA17_Chr4g0038981 42.368 321 171 8 25 345 22 328 8.77e-78 242
Msa0513080 MtrunA17_Chr4g0039011 42.042 333 180 7 25 357 41 360 1.02e-76 240
Msa0513080 MtrunA17_Chr4g0038941 43.210 324 164 8 25 345 51 357 1.55e-76 239
Msa0513080 MtrunA17_Chr4g0038971 41.840 337 181 9 10 345 6 328 1.88e-75 236
Msa0513080 MtrunA17_Chr4g0038961 42.857 322 168 9 25 345 22 328 2.86e-75 236
Msa0513080 MtrunA17_Chr2g0294591 39.755 327 184 8 25 349 29 344 5.26e-71 226
Msa0513080 MtrunA17_Chr2g0294601 40.964 332 179 10 25 352 58 376 1.38e-68 220
Msa0513080 MtrunA17_Chr4g0039021 40.845 284 159 4 52 335 7 281 5.43e-67 213
Msa0513080 MtrunA17_Chr1g0174261 41.724 290 160 5 55 343 1 282 6.86e-66 212
Msa0513080 MtrunA17_Chr7g0250301 37.658 316 188 6 26 341 8 314 8.03e-66 211
Msa0513080 MtrunA17_Chr4g0076581 36.735 343 202 11 6 341 14 348 2.65e-57 194
Msa0513080 MtrunA17_Chr2g0290821 37.651 332 193 9 20 343 22 347 8.59e-56 189
Msa0513080 MtrunA17_Chr4g0062771 35.613 351 208 11 2 343 9 350 1.12e-53 184
Msa0513080 MtrunA17_Chr7g0250321 37.838 296 170 7 1 292 1 286 4.06e-53 177
Msa0513080 MtrunA17_Chr8g0383311 34.139 331 204 10 26 349 43 366 5.18e-52 180
Msa0513080 MtrunA17_Chr1g0148391 36.697 327 189 11 26 343 26 343 3.75e-51 177
Msa0513080 MtrunA17_Chr4g0069801 34.637 358 209 13 4 352 11 352 1.05e-50 176
Msa0513080 MtrunA17_Chr7g0253091 34.097 349 205 13 1 336 1 337 3.66e-50 174
Msa0513080 MtrunA17_Chr3g0138741 36.036 333 197 11 19 343 24 348 8.80e-50 174
Msa0513080 MtrunA17_Chr6g0461601 36.778 329 179 14 26 338 26 341 2.56e-48 169
Msa0513080 MtrunA17_Chr3g0129341 32.670 352 216 15 9 349 14 355 1.85e-45 162
Msa0513080 MtrunA17_Chr5g0436361 32.131 305 195 8 42 342 53 349 1.05e-43 155
Msa0513080 MtrunA17_Chr3g0105981 34.154 325 200 9 25 343 26 342 3.64e-43 155
Msa0513080 MtrunA17_Chr2g0306311 32.486 354 195 12 26 343 30 375 5.34e-43 156
Msa0513080 MtrunA17_Chr2g0294581 38.931 131 78 1 25 153 75 205 1.04e-22 96.3
Msa0513080 MtrunA17_Chr2g0294581 39.796 98 51 5 243 339 187 277 1.47e-12 67.4
Msa0513080 MtrunA17_Chr4g0018771 45.977 87 42 2 257 343 94 175 1.64e-16 77.8
Msa0513080 MtrunA17_Chr4g0018771 45.161 62 34 0 23 84 23 84 1.68e-11 63.2
Msa0513080 MtrunA17_Chr4g0018861 45.977 87 42 2 257 343 92 173 4.92e-16 76.3
Msa0513080 MtrunA17_Chr4g0018861 45.902 61 33 0 24 84 20 80 1.89e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0513080 AT2G05790.1 73.054 334 90 0 22 355 21 354 0.0 531
Msa0513080 AT5G55180.2 68.421 323 102 0 21 343 22 344 1.49e-158 453
Msa0513080 AT5G55180.1 68.421 323 102 0 21 343 22 344 1.70e-158 452
Msa0513080 AT4G26830.1 63.905 338 120 2 9 346 9 344 3.19e-148 426
Msa0513080 AT4G26830.2 64.923 325 113 1 22 346 25 348 4.02e-148 426
Msa0513080 AT1G32860.1 48.160 326 164 4 25 347 28 351 2.07e-103 311
Msa0513080 AT2G27500.2 46.386 332 171 3 23 353 26 351 8.53e-100 300
Msa0513080 AT2G27500.1 46.386 332 171 3 23 353 26 351 1.79e-99 300
Msa0513080 AT4G18340.2 45.245 347 181 4 8 347 10 354 2.91e-98 296
Msa0513080 AT4G18340.1 45.376 346 180 4 8 346 10 353 4.74e-98 296
Msa0513080 AT1G30080.2 45.115 348 182 4 3 343 7 352 4.83e-98 296
Msa0513080 AT1G30080.1 47.352 321 166 3 24 343 34 352 7.99e-98 296
Msa0513080 AT5G24318.4 46.106 321 166 4 25 343 29 344 9.49e-97 292
Msa0513080 AT5G42100.2 47.447 333 167 6 15 343 18 346 1.31e-96 294
Msa0513080 AT5G42100.1 47.447 333 167 6 15 343 18 346 1.48e-96 293
Msa0513080 AT5G24318.2 44.838 339 180 4 25 361 29 362 8.53e-96 293
Msa0513080 AT5G24318.1 44.838 339 180 4 25 361 29 362 1.69e-95 292
Msa0513080 AT3G15800.1 47.561 328 167 4 27 352 44 368 2.15e-95 290
Msa0513080 AT2G16230.1 45.031 322 175 2 26 346 25 345 4.24e-92 285
Msa0513080 AT5G42720.1 44.638 345 182 4 4 346 10 347 1.19e-91 281
Msa0513080 AT2G26600.1 43.114 334 185 3 16 345 21 353 4.42e-90 276
Msa0513080 AT5G56590.1 41.104 326 189 3 23 346 23 347 3.81e-87 272
Msa0513080 AT4G29360.2 43.149 343 192 2 6 346 15 356 1.18e-86 272
Msa0513080 AT4G14080.1 41.390 331 190 3 19 346 35 364 2.46e-86 269
Msa0513080 AT4G34480.2 44.828 319 174 2 26 343 26 343 3.59e-86 265
Msa0513080 AT4G29360.1 41.449 345 201 1 2 346 3 346 1.22e-85 269
Msa0513080 AT2G01630.2 41.284 327 188 2 26 349 23 348 1.26e-84 262
Msa0513080 AT3G07320.1 40.841 333 190 5 27 355 26 355 1.47e-84 264
Msa0513080 AT2G01630.3 41.284 327 188 2 26 349 23 348 2.61e-84 263
Msa0513080 AT4G34480.1 44.828 319 174 2 26 343 26 343 2.80e-84 265
Msa0513080 AT3G23770.1 40.469 341 194 4 19 353 30 367 3.03e-84 264
Msa0513080 AT2G01630.1 41.284 327 188 2 26 349 23 348 2.63e-83 262
Msa0513080 AT1G66250.1 40.896 335 193 3 18 349 24 356 2.86e-83 262
Msa0513080 AT1G11820.1 39.812 319 188 3 26 341 44 361 7.82e-81 252
Msa0513080 AT3G13560.4 40.244 328 190 4 19 341 17 343 2.77e-80 254
Msa0513080 AT3G13560.1 40.244 328 190 4 19 341 17 343 2.77e-80 254
Msa0513080 AT3G13560.2 40.244 328 190 4 19 341 17 343 2.77e-80 254
Msa0513080 AT3G13560.5 40.244 328 190 4 19 341 17 343 2.77e-80 254
Msa0513080 AT3G13560.3 40.244 328 190 4 19 341 17 343 2.77e-80 254
Msa0513080 AT1G11820.3 39.812 319 188 3 26 341 44 361 1.03e-79 252
Msa0513080 AT1G11820.2 39.812 319 188 3 26 341 44 361 2.34e-79 252
Msa0513080 AT2G27500.3 44.604 278 147 3 77 353 2 273 1.58e-78 244
Msa0513080 AT4G16260.1 39.420 345 197 7 4 348 5 337 5.63e-76 238
Msa0513080 AT3G57270.1 40.923 325 181 7 23 345 24 339 6.94e-73 230
Msa0513080 AT3G46570.1 41.714 350 183 12 1 343 7 342 1.60e-71 227
Msa0513080 AT4G16260.2 40.190 316 180 6 33 348 2 308 4.81e-71 224
Msa0513080 AT3G55430.1 38.988 336 186 12 14 343 19 341 3.02e-70 227
Msa0513080 AT2G26600.2 42.913 254 143 2 93 345 7 259 2.94e-69 219
Msa0513080 AT3G61810.1 37.690 329 186 5 26 346 55 372 7.13e-69 221
Msa0513080 AT1G77780.1 39.650 343 192 9 4 343 2 332 6.01e-66 213
Msa0513080 AT3G57260.1 37.719 342 196 8 4 345 14 338 1.88e-65 211
Msa0513080 AT3G57260.2 37.719 342 196 8 4 345 30 354 3.89e-65 211
Msa0513080 AT5G24318.3 44.934 227 121 1 135 361 1 223 3.56e-64 207
Msa0513080 AT2G39640.1 36.047 344 206 10 3 343 6 338 1.13e-60 204
Msa0513080 AT1G77790.1 36.443 343 208 7 3 343 7 341 2.60e-59 195
Msa0513080 AT3G57240.1 37.188 320 187 8 26 345 35 340 5.34e-59 194
Msa0513080 AT5G20390.1 36.657 341 204 9 3 341 11 341 9.88e-59 194
Msa0513080 AT4G34480.3 47.186 231 120 2 114 343 3 232 2.94e-58 194
Msa0513080 AT5G20330.1 39.144 327 188 8 19 343 27 344 3.18e-58 192
Msa0513080 AT5G20340.1 38.066 331 192 9 16 343 33 353 5.44e-56 187
Msa0513080 AT3G24330.1 33.520 358 219 12 2 349 16 364 4.36e-54 186
Msa0513080 AT1G33220.1 36.310 336 195 7 9 343 17 334 3.66e-53 179
Msa0513080 AT5G18220.1 33.898 354 214 11 5 351 13 353 4.29e-51 177
Msa0513080 AT4G17180.1 34.402 343 204 11 24 357 23 353 9.39e-51 176
Msa0513080 AT2G19440.2 35.088 342 198 14 19 349 16 344 1.16e-50 176
Msa0513080 AT2G19440.1 35.088 342 198 14 19 349 16 344 1.16e-50 176
Msa0513080 AT3G55780.1 29.375 320 216 7 42 356 51 365 8.99e-50 171
Msa0513080 AT1G64760.1 34.706 340 202 14 24 353 23 352 3.35e-49 172
Msa0513080 AT1G64760.2 34.706 340 202 14 24 353 23 352 3.35e-49 172
Msa0513080 AT5G58090.1 36.420 324 184 13 24 336 20 332 1.11e-48 171
Msa0513080 AT5G64790.1 34.181 354 215 11 4 349 8 351 5.85e-48 169
Msa0513080 AT4G31140.1 34.006 347 212 13 19 356 20 358 2.41e-47 167
Msa0513080 AT3G04010.1 32.493 357 221 12 6 353 15 360 5.59e-46 164
Msa0513080 AT5G20870.1 33.618 351 207 14 2 336 7 347 1.56e-45 163
Msa0513080 AT5G20560.1 33.134 335 211 9 4 335 12 336 3.24e-44 155
Msa0513080 AT5G58480.1 33.131 329 204 9 25 345 25 345 1.02e-42 155

Find 115 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTACTTCAGAGAGGAATTT+TGG 0.105755 3_4:-63280791 Msa0513080:CDS
GATGGCTTCTATTTGGGTTT+TGG 0.211284 3_4:+63281441 None:intergenic
CGACGGCGATGGCTTCTATT+TGG 0.212947 3_4:+63281434 None:intergenic
ATATCTGCAAAATGAAATTT+AGG 0.220474 3_4:+63280527 None:intergenic
CATGGCGGGGATGAGGTATT+TGG 0.229684 3_4:+63281378 None:intergenic
TCGAGGTTGAGAATATAATT+TGG 0.241683 3_4:-63280570 Msa0513080:three_prime_UTR
GTATCACTTAGTATGTTAAT+TGG 0.258538 3_4:-63280481 Msa0513080:three_prime_UTR
TCCTCTTATCCGTCTTCAAC+CGG 0.271730 3_4:-63281271 Msa0513080:CDS
TCATAAACTTTCTTCATATC+AGG 0.295925 3_4:+63280758 None:intergenic
GACGGCGATGGCTTCTATTT+GGG 0.306420 3_4:+63281435 None:intergenic
TTCAACCCCGCCACAGTAAA+CGG 0.314456 3_4:+63280731 None:intergenic
TTATGATCAGTTCATTATCT+TGG 0.322108 3_4:-63280604 Msa0513080:three_prime_UTR
AGATTCGCATTCGGTCTTAA+AGG 0.324788 3_4:+63280860 None:intergenic
CGAGGTTGAGAATATAATTT+GGG 0.329120 3_4:-63280569 Msa0513080:three_prime_UTR
TTTAGCATTGGTTTAATTAC+GGG 0.335880 3_4:+63281223 None:intergenic
TATGATCAGTTCATTATCTT+GGG 0.350524 3_4:-63280603 Msa0513080:three_prime_UTR
TTGTATCACATTAATTCATA+TGG 0.352912 3_4:+63280321 None:intergenic
GTTTAGCATTGGTTTAATTA+CGG 0.353752 3_4:+63281222 None:intergenic
GATTCGCATTCGGTCTTAAA+GGG 0.355739 3_4:+63280861 None:intergenic
CTCTCACTTCCACTACTTGC+AGG 0.379057 3_4:-63281994 Msa0513080:intron
CGCTTTGTTTCGTGAAAACC+CGG 0.382673 3_4:-63281110 Msa0513080:CDS
AGTTCTGCTCAGCCGCTTCC+CGG 0.386123 3_4:+63280686 None:intergenic
GTTTACGGTTACTTTGATTC+CGG 0.388759 3_4:+63281549 None:intergenic
TGAAACGTCGTCGTATTTGA+TGG 0.393298 3_4:-63281191 Msa0513080:CDS
TACCGTGACGTTTCGGCGCC+GGG 0.395980 3_4:-63280704 Msa0513080:CDS
GACGTTTCGGCGCCGGGAAG+CGG 0.399867 3_4:-63280698 Msa0513080:CDS
TTGTTCGTTTGGGAGGTTTA+CGG 0.405496 3_4:+63281534 None:intergenic
TATAGAAGAGTTGTTCGTTT+GGG 0.414891 3_4:+63281524 None:intergenic
TTTGATTCCGGATCCGGATA+AGG 0.415353 3_4:+63281561 None:intergenic
GAAGAGTTACCGTGACGTTT+CGG 0.420176 3_4:-63280711 Msa0513080:CDS
TGTACGCAGCAGCGTTCTGC+GGG 0.420666 3_4:+63280924 None:intergenic
AATTCCATTGGAGTGAACTA+TGG 0.424527 3_4:-63281691 Msa0513080:CDS
GGTTACTTTGATTCCGGATC+CGG 0.435065 3_4:+63281555 None:intergenic
TAGACGATGCATGGTGGGAT+AGG 0.436707 3_4:+63282047 None:intergenic
GATGTCCCGTTTACTGTGGC+GGG 0.446901 3_4:-63280737 Msa0513080:CDS
GGTAATGTGGATCCGGGTAA+CGG 0.452916 3_4:-63281088 Msa0513080:CDS
TCAAATACGACGACGTTTCA+CGG 0.456148 3_4:+63281194 None:intergenic
ATTACGGGTTCTATGAGATC+GGG 0.459527 3_4:+63281238 None:intergenic
TAGTGGAAGTGAGAGGTATG+AGG 0.464913 3_4:+63282002 None:intergenic
GTTACAGATGGTAATTCCAT+TGG 0.466020 3_4:-63281703 Msa0513080:intron
CCCGGTTGAAGACGGATAAG+AGG 0.467032 3_4:+63281270 None:intergenic
GTAATGTGGATCCGGGTAAC+GGG 0.469921 3_4:-63281087 Msa0513080:CDS
CTAAAATCCTTATCCGGATC+CGG 0.470230 3_4:-63281568 Msa0513080:CDS
AAACCCGGGTAATGTGGATC+CGG 0.471625 3_4:-63281095 Msa0513080:CDS
GTGAGAGGTATGAGGAAATG+AGG 0.472680 3_4:+63282010 None:intergenic
TCATTATCTTGGGTGTGTCT+AGG 0.480062 3_4:-63280593 Msa0513080:three_prime_UTR
TCAACCCCGCCACAGTAAAC+GGG 0.482442 3_4:+63280732 None:intergenic
AGAGTGGTTGTGAGTGAAAC+GGG 0.485100 3_4:-63280986 Msa0513080:CDS
GTATAGAAGAGTTGTTCGTT+TGG 0.487771 3_4:+63281523 None:intergenic
AATTACGGGTTCTATGAGAT+CGG 0.488872 3_4:+63281237 None:intergenic
TTACCGTGACGTTTCGGCGC+CGG 0.490715 3_4:-63280705 Msa0513080:CDS
TTTAATGAAAATGGGAAAGT+GGG 0.491545 3_4:-63280815 Msa0513080:CDS
CCAAAATTCCTCTCTGAAGT+AGG 0.497611 3_4:+63280791 None:intergenic
TAAAATCACAAGGAATCGAC+CGG 0.501310 3_4:-63281621 Msa0513080:CDS
GCCGTTCTAAAATCCTTATC+CGG 0.508050 3_4:-63281574 Msa0513080:CDS
TAGAGTGGTTGTGAGTGAAA+CGG 0.511502 3_4:-63280987 Msa0513080:CDS
AACTTCATTACCGACGGCGA+TGG 0.513226 3_4:+63281423 None:intergenic
AGAAGAGTTGTTCGTTTGGG+AGG 0.520427 3_4:+63281527 None:intergenic
TATATAGCTAAGAGATCAGT+AGG 0.522243 3_4:+63280344 None:intergenic
CAAATAGAAGCCATCGCCGT+CGG 0.523034 3_4:-63281433 Msa0513080:CDS
CCAATCGCTTTATCTGCTCT+CGG 0.531316 3_4:-63281295 Msa0513080:CDS
AGACGATGCATGGTGGGATA+GGG 0.531744 3_4:+63282048 None:intergenic
TTGTACGCAGCAGCGTTCTG+CGG 0.534277 3_4:+63280923 None:intergenic
CTACTTTGAATGCTGAGGGT+AGG 0.540473 3_4:+63281653 None:intergenic
TTACCCGGATCCACATTACC+CGG 0.542092 3_4:+63281091 None:intergenic
AACCCGGGTAATGTGGATCC+GGG 0.543293 3_4:-63281094 Msa0513080:CDS
GAGGTATGAGGAAATGAGGA+TGG 0.545090 3_4:+63282014 None:intergenic
CGTGCAACTTTCACTACACA+TGG 0.548989 3_4:+63280404 None:intergenic
CTTAACTACTTTGAATGCTG+AGG 0.551196 3_4:+63281648 None:intergenic
AACTTTCCTACGCCCTCACA+TGG 0.552284 3_4:-63281492 Msa0513080:CDS
TCTTGGGTGTGTCTAGGTCG+AGG 0.552824 3_4:-63280587 Msa0513080:three_prime_UTR
TGATGTCCCGTTTACTGTGG+CGG 0.556256 3_4:-63280738 Msa0513080:CDS
AACGTCAGCGTTTGACTCGT+AGG 0.557317 3_4:+63281147 None:intergenic
TCGTGAAAACCCGGGTAATG+TGG 0.558115 3_4:-63281101 Msa0513080:CDS
TTGGAGCCATGTGAGGGCGT+AGG 0.561253 3_4:+63281486 None:intergenic
TTGAATGACCCGGTTGAAGA+CGG 0.562405 3_4:+63281262 None:intergenic
TAAACGGTCAGATTCGCATT+CGG 0.565144 3_4:+63280851 None:intergenic
CCGAGAGCAGATAAAGCGAT+TGG 0.569316 3_4:+63281295 None:intergenic
CCTCTTATCCGTCTTCAACC+GGG 0.572031 3_4:-63281270 Msa0513080:CDS
TCACGGAGGAAGTTTAGCAT+TGG 0.572211 3_4:+63281211 None:intergenic
TTAACTACTTTGAATGCTGA+GGG 0.578124 3_4:+63281649 None:intergenic
TTCCCGGCGCCGAAACGTCA+CGG 0.582794 3_4:+63280702 None:intergenic
GCGACCATAGTTCACTCCAA+TGG 0.590342 3_4:+63281687 None:intergenic
ATGAGTAGACGATGCATGGT+GGG 0.593641 3_4:+63282042 None:intergenic
GGCGGGGATGAGGTATTTGG+TGG 0.601341 3_4:+63281381 None:intergenic
GAAGCAATACCTGCAAGTAG+TGG 0.602871 3_4:+63281985 None:intergenic
CACGAAAACTTCATTACCGA+CGG 0.607493 3_4:+63281417 None:intergenic
GAAACGGGTTGGCCTTCGAA+AGG 0.613978 3_4:-63280971 Msa0513080:CDS
TCAATACAACGACGTTAGAG+TGG 0.620974 3_4:-63281002 Msa0513080:CDS
AGAAGATTCTGAACAACGGT+GGG 0.622512 3_4:-63280886 Msa0513080:CDS
CGGTGTCGTAGAGTTTGACC+CGG 0.627592 3_4:+63281602 None:intergenic
ATTCGCATTCGGTCTTAAAG+GGG 0.628701 3_4:+63280862 None:intergenic
TTATGATGTCCCGTTTACTG+TGG 0.629738 3_4:-63280741 Msa0513080:CDS
GAGATCGGGTTTGAATGACC+CGG 0.632773 3_4:+63281252 None:intergenic
CAAACTCTACGACACCGACC+CGG 0.633891 3_4:-63281596 Msa0513080:CDS
TCATCACTATCACCTTTCGA+AGG 0.639827 3_4:+63280959 None:intergenic
GAAAGGTGATAGTGATGAGG+TGG 0.640804 3_4:-63280954 Msa0513080:CDS
AAGAATGAGTAGACGATGCA+TGG 0.642954 3_4:+63282038 None:intergenic
CAGAACGCTGCTGCGTACAA+CGG 0.643294 3_4:-63280920 Msa0513080:CDS
TACCCGGATCCACATTACCC+GGG 0.647522 3_4:+63281092 None:intergenic
TTCGAAAGGTGATAGTGATG+AGG 0.659057 3_4:-63280957 Msa0513080:CDS
CTGCAAGTAGTGGAAGTGAG+AGG 0.663993 3_4:+63281995 None:intergenic
AAGAAGATTCTGAACAACGG+TGG 0.664425 3_4:-63280887 Msa0513080:CDS
AAAATCACAAGGAATCGACC+GGG 0.666777 3_4:-63281620 Msa0513080:CDS
GTTAAGAAGATTCTGAACAA+CGG 0.668546 3_4:-63280890 Msa0513080:CDS
ATGTCCCGTTTACTGTGGCG+GGG 0.669480 3_4:-63280736 Msa0513080:CDS
AATGAGTAGACGATGCATGG+TGG 0.672661 3_4:+63282041 None:intergenic
GTTAAGCTTCTAAAATCACA+AGG 0.686975 3_4:-63281631 Msa0513080:CDS
TGGTTGTGAGTGAAACGGGT+TGG 0.699770 3_4:-63280982 Msa0513080:CDS
GCTTTGTTTCGTGAAAACCC+GGG 0.717428 3_4:-63281109 Msa0513080:CDS
AAAGGTGATAGTGATGAGGT+GGG 0.725483 3_4:-63280953 Msa0513080:CDS
GTACGCAGCAGCGTTCTGCG+GGG 0.728728 3_4:+63280925 None:intergenic
GCAACTTTCACTACACATGG+AGG 0.733978 3_4:+63280407 None:intergenic
AAGTGGGACCTACTTCAGAG+AGG 0.745668 3_4:-63280799 Msa0513080:CDS
AATACGACGACGTTTCACGG+AGG 0.753555 3_4:+63281197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTTTAAGATTTGTT+GGG - chr3_4:63281912-63281931 Msa0513080:intron 10.0%
!!! TAATATTTTTAAGATTTGTT+GGG - chr3_4:63281912-63281931 Msa0513080:intron 10.0%
!! AATAATGTAAACAAAAAAGA+TGG + chr3_4:63280425-63280444 None:intergenic 15.0%
!!! TATTGGGATTAAATTTTATT+GGG - chr3_4:63281866-63281885 Msa0513080:intron 15.0%
!!! CTAATATTTTTAAGATTTGT+TGG - chr3_4:63281911-63281930 Msa0513080:intron 15.0%
!!! AATATTTTTAAGATTTGTTG+GGG - chr3_4:63281913-63281932 Msa0513080:intron 15.0%
!! AATAATGTAAACAAAAAAGA+TGG + chr3_4:63280425-63280444 None:intergenic 15.0%
!!! TATTGGGATTAAATTTTATT+GGG - chr3_4:63281866-63281885 Msa0513080:intron 15.0%
!!! CTAATATTTTTAAGATTTGT+TGG - chr3_4:63281911-63281930 Msa0513080:intron 15.0%
!!! AATATTTTTAAGATTTGTTG+GGG - chr3_4:63281913-63281932 Msa0513080:intron 15.0%
!! TGTTTAATATAAACATGTGT+AGG - chr3_4:63280483-63280502 Msa0513080:three_prime_UTR 20.0%
!!! AAAAAGCGCAAATAAATAAA+CGG + chr3_4:63281537-63281556 None:intergenic 20.0%
!! ATATCTGCAAAATGAAATTT+AGG + chr3_4:63281845-63281864 None:intergenic 20.0%
!!! GTATTGGGATTAAATTTTAT+TGG - chr3_4:63281865-63281884 Msa0513080:intron 20.0%
!!! ATATTTTTAAGATTTGTTGG+GGG - chr3_4:63281914-63281933 Msa0513080:intron 20.0%
!! TTGTATCACATTAATTCATA+TGG + chr3_4:63282051-63282070 None:intergenic 20.0%
!! TGTTTAATATAAACATGTGT+AGG - chr3_4:63280483-63280502 Msa0513080:three_prime_UTR 20.0%
!!! AAAAAGCGCAAATAAATAAA+CGG + chr3_4:63281537-63281556 None:intergenic 20.0%
!! ATATCTGCAAAATGAAATTT+AGG + chr3_4:63281845-63281864 None:intergenic 20.0%
!!! GTATTGGGATTAAATTTTAT+TGG - chr3_4:63281865-63281884 Msa0513080:intron 20.0%
!!! ATATTTTTAAGATTTGTTGG+GGG - chr3_4:63281914-63281933 Msa0513080:intron 20.0%
!! TTGTATCACATTAATTCATA+TGG + chr3_4:63282051-63282070 None:intergenic 20.0%
! TAATATAAACATGTGTAGGT+AGG - chr3_4:63280487-63280506 Msa0513080:three_prime_UTR 25.0%
!! TTATTAATTGCTGTTACAGA+TGG - chr3_4:63280654-63280673 Msa0513080:three_prime_UTR 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG + chr3_4:63281149-63281168 None:intergenic 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG + chr3_4:63281150-63281169 None:intergenic 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG - chr3_4:63281545-63281564 Msa0513080:CDS 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG - chr3_4:63281546-63281565 Msa0513080:CDS 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG - chr3_4:63281553-63281572 Msa0513080:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG - chr3_4:63281554-63281573 Msa0513080:CDS 25.0%
! TCATAAACTTTCTTCATATC+AGG + chr3_4:63281614-63281633 None:intergenic 25.0%
! TTATGATCAGTTCATTATCT+TGG - chr3_4:63281765-63281784 Msa0513080:intron 25.0%
! TATGATCAGTTCATTATCTT+GGG - chr3_4:63281766-63281785 Msa0513080:intron 25.0%
!! TTCATTTTGCAGATATGTAT+TGG - chr3_4:63281849-63281868 Msa0513080:intron 25.0%
!! TCATTTTGCAGATATGTATT+GGG - chr3_4:63281850-63281869 Msa0513080:intron 25.0%
! GTATCACTTAGTATGTTAAT+TGG - chr3_4:63281888-63281907 Msa0513080:intron 25.0%
! TAATATAAACATGTGTAGGT+AGG - chr3_4:63280487-63280506 Msa0513080:three_prime_UTR 25.0%
!! TTATTAATTGCTGTTACAGA+TGG - chr3_4:63280654-63280673 Msa0513080:three_prime_UTR 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG + chr3_4:63281149-63281168 None:intergenic 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG + chr3_4:63281150-63281169 None:intergenic 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG - chr3_4:63281545-63281564 Msa0513080:CDS 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG - chr3_4:63281546-63281565 Msa0513080:CDS 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG - chr3_4:63281553-63281572 Msa0513080:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG - chr3_4:63281554-63281573 Msa0513080:CDS 25.0%
! TCATAAACTTTCTTCATATC+AGG + chr3_4:63281614-63281633 None:intergenic 25.0%
! TTATGATCAGTTCATTATCT+TGG - chr3_4:63281765-63281784 Msa0513080:intron 25.0%
! TATGATCAGTTCATTATCTT+GGG - chr3_4:63281766-63281785 Msa0513080:intron 25.0%
!! TTCATTTTGCAGATATGTAT+TGG - chr3_4:63281849-63281868 Msa0513080:intron 25.0%
!! TCATTTTGCAGATATGTATT+GGG - chr3_4:63281850-63281869 Msa0513080:intron 25.0%
! GTATCACTTAGTATGTTAAT+TGG - chr3_4:63281888-63281907 Msa0513080:intron 25.0%
TGTATGTGAAAGTGACTTAT+CGG + chr3_4:63280523-63280542 None:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG + chr3_4:63280723-63280742 None:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG - chr3_4:63280738-63280757 Msa0513080:CDS 30.0%
TATAGAAGAGTTGTTCGTTT+GGG + chr3_4:63280848-63280867 None:intergenic 30.0%
! TTTGTGAATGTTTTTCATGG+CGG + chr3_4:63281009-63281028 None:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG + chr3_4:63281012-63281031 None:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG + chr3_4:63281052-63281071 None:intergenic 30.0%
!!! TAATATTTTAACCCGTTACC+CGG + chr3_4:63281296-63281315 None:intergenic 30.0%
GTTAAGAAGATTCTGAACAA+CGG - chr3_4:63281479-63281498 Msa0513080:CDS 30.0%
TCGAGGTTGAGAATATAATT+TGG - chr3_4:63281799-63281818 Msa0513080:intron 30.0%
CGAGGTTGAGAATATAATTT+GGG - chr3_4:63281800-63281819 Msa0513080:intron 30.0%
TATATAGCTAAGAGATCAGT+AGG + chr3_4:63282028-63282047 None:intergenic 30.0%
TGTATGTGAAAGTGACTTAT+CGG + chr3_4:63280523-63280542 None:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG + chr3_4:63280723-63280742 None:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG - chr3_4:63280738-63280757 Msa0513080:CDS 30.0%
TATAGAAGAGTTGTTCGTTT+GGG + chr3_4:63280848-63280867 None:intergenic 30.0%
! TTTGTGAATGTTTTTCATGG+CGG + chr3_4:63281009-63281028 None:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG + chr3_4:63281012-63281031 None:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG + chr3_4:63281052-63281071 None:intergenic 30.0%
!!! TAATATTTTAACCCGTTACC+CGG + chr3_4:63281296-63281315 None:intergenic 30.0%
GTTAAGAAGATTCTGAACAA+CGG - chr3_4:63281479-63281498 Msa0513080:CDS 30.0%
TCGAGGTTGAGAATATAATT+TGG - chr3_4:63281799-63281818 Msa0513080:intron 30.0%
CGAGGTTGAGAATATAATTT+GGG - chr3_4:63281800-63281819 Msa0513080:intron 30.0%
TATATAGCTAAGAGATCAGT+AGG + chr3_4:63282028-63282047 None:intergenic 30.0%
CAAAAAAGATGGTGAAGAAG+TGG + chr3_4:63280414-63280433 None:intergenic 35.0%
AGAAATGTCAGCTACATCTA+CGG + chr3_4:63280452-63280471 None:intergenic 35.0%
GTTACAGATGGTAATTCCAT+TGG - chr3_4:63280666-63280685 Msa0513080:three_prime_UTR 35.0%
AATTCCATTGGAGTGAACTA+TGG - chr3_4:63280678-63280697 Msa0513080:exon 35.0%
CTTAACTACTTTGAATGCTG+AGG + chr3_4:63280724-63280743 None:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG - chr3_4:63280748-63280767 Msa0513080:CDS 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG + chr3_4:63280799-63280818 None:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG + chr3_4:63280823-63280842 None:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG + chr3_4:63280849-63280868 None:intergenic 35.0%
!! ATGGCTTCTATTTGGGTTTT+GGG + chr3_4:63280930-63280949 None:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG + chr3_4:63281008-63281027 None:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG + chr3_4:63281049-63281068 None:intergenic 35.0%
! GATTGGTGAAGAGATTTTGA+TGG + chr3_4:63281060-63281079 None:intergenic 35.0%
AATTACGGGTTCTATGAGAT+CGG + chr3_4:63281135-63281154 None:intergenic 35.0%
! CTACTTCAGAGAGGAATTTT+GGG - chr3_4:63281579-63281598 Msa0513080:CDS 35.0%
CAAAAAAGATGGTGAAGAAG+TGG + chr3_4:63280414-63280433 None:intergenic 35.0%
AGAAATGTCAGCTACATCTA+CGG + chr3_4:63280452-63280471 None:intergenic 35.0%
GTTACAGATGGTAATTCCAT+TGG - chr3_4:63280666-63280685 Msa0513080:three_prime_UTR 35.0%
AATTCCATTGGAGTGAACTA+TGG - chr3_4:63280678-63280697 Msa0513080:exon 35.0%
CTTAACTACTTTGAATGCTG+AGG + chr3_4:63280724-63280743 None:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG - chr3_4:63280748-63280767 Msa0513080:CDS 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG + chr3_4:63280799-63280818 None:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG + chr3_4:63280823-63280842 None:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG + chr3_4:63280849-63280868 None:intergenic 35.0%
!! ATGGCTTCTATTTGGGTTTT+GGG + chr3_4:63280930-63280949 None:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG + chr3_4:63281008-63281027 None:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG + chr3_4:63281049-63281068 None:intergenic 35.0%
! GATTGGTGAAGAGATTTTGA+TGG + chr3_4:63281060-63281079 None:intergenic 35.0%
AATTACGGGTTCTATGAGAT+CGG + chr3_4:63281135-63281154 None:intergenic 35.0%
! CTACTTCAGAGAGGAATTTT+GGG - chr3_4:63281579-63281598 Msa0513080:CDS 35.0%
AAGAATGAGTAGACGATGCA+TGG + chr3_4:63280334-63280353 None:intergenic 40.0%
AAAATCACAAGGAATCGACC+GGG - chr3_4:63280749-63280768 Msa0513080:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG + chr3_4:63280794-63280813 None:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG + chr3_4:63280795-63280814 None:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG - chr3_4:63280795-63280814 Msa0513080:CDS 40.0%
CTAAAATCCTTATCCGGATC+CGG - chr3_4:63280801-63280820 Msa0513080:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG + chr3_4:63280838-63280857 None:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG + chr3_4:63280892-63280911 None:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG + chr3_4:63280905-63280924 None:intergenic 40.0%
!! TGGCTTCTATTTGGGTTTTG+GGG + chr3_4:63280929-63280948 None:intergenic 40.0%
!! GATGGCTTCTATTTGGGTTT+TGG + chr3_4:63280931-63280950 None:intergenic 40.0%
CACGAAAACTTCATTACCGA+CGG + chr3_4:63280955-63280974 None:intergenic 40.0%
! TGTGAATGTTTTTCATGGCG+GGG + chr3_4:63281007-63281026 None:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG + chr3_4:63281134-63281153 None:intergenic 40.0%
TCAAATACGACGACGTTTCA+CGG + chr3_4:63281178-63281197 None:intergenic 40.0%
TGAAACGTCGTCGTATTTGA+TGG - chr3_4:63281178-63281197 Msa0513080:CDS 40.0%
! TTGACTCGTAGGCGAAAAAT+GGG + chr3_4:63281214-63281233 None:intergenic 40.0%
! TTTGACTCGTAGGCGAAAAA+TGG + chr3_4:63281215-63281234 None:intergenic 40.0%
TCAATACAACGACGTTAGAG+TGG - chr3_4:63281367-63281386 Msa0513080:CDS 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG - chr3_4:63281382-63281401 Msa0513080:CDS 40.0%
TCATCACTATCACCTTTCGA+AGG + chr3_4:63281413-63281432 None:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG - chr3_4:63281412-63281431 Msa0513080:CDS 40.0%
! AAAGGTGATAGTGATGAGGT+GGG - chr3_4:63281416-63281435 Msa0513080:CDS 40.0%
AAGAAGATTCTGAACAACGG+TGG - chr3_4:63281482-63281501 Msa0513080:CDS 40.0%
AGAAGATTCTGAACAACGGT+GGG - chr3_4:63281483-63281502 Msa0513080:CDS 40.0%
ATTCGCATTCGGTCTTAAAG+GGG + chr3_4:63281510-63281529 None:intergenic 40.0%
GATTCGCATTCGGTCTTAAA+GGG + chr3_4:63281511-63281530 None:intergenic 40.0%
AGATTCGCATTCGGTCTTAA+AGG + chr3_4:63281512-63281531 None:intergenic 40.0%
TAAACGGTCAGATTCGCATT+CGG + chr3_4:63281521-63281540 None:intergenic 40.0%
!! CCAAAATTCCTCTCTGAAGT+AGG + chr3_4:63281581-63281600 None:intergenic 40.0%
! CCTACTTCAGAGAGGAATTT+TGG - chr3_4:63281578-63281597 Msa0513080:CDS 40.0%
TTATGATGTCCCGTTTACTG+TGG - chr3_4:63281628-63281647 Msa0513080:CDS 40.0%
TCATTATCTTGGGTGTGTCT+AGG - chr3_4:63281776-63281795 Msa0513080:intron 40.0%
AAGAATGAGTAGACGATGCA+TGG + chr3_4:63280334-63280353 None:intergenic 40.0%
AAAATCACAAGGAATCGACC+GGG - chr3_4:63280749-63280768 Msa0513080:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG + chr3_4:63280794-63280813 None:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG + chr3_4:63280795-63280814 None:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG - chr3_4:63280795-63280814 Msa0513080:CDS 40.0%
CTAAAATCCTTATCCGGATC+CGG - chr3_4:63280801-63280820 Msa0513080:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG + chr3_4:63280838-63280857 None:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG + chr3_4:63280892-63280911 None:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG + chr3_4:63280905-63280924 None:intergenic 40.0%
!! TGGCTTCTATTTGGGTTTTG+GGG + chr3_4:63280929-63280948 None:intergenic 40.0%
!! GATGGCTTCTATTTGGGTTT+TGG + chr3_4:63280931-63280950 None:intergenic 40.0%
CACGAAAACTTCATTACCGA+CGG + chr3_4:63280955-63280974 None:intergenic 40.0%
! TGTGAATGTTTTTCATGGCG+GGG + chr3_4:63281007-63281026 None:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG + chr3_4:63281134-63281153 None:intergenic 40.0%
TCAAATACGACGACGTTTCA+CGG + chr3_4:63281178-63281197 None:intergenic 40.0%
TGAAACGTCGTCGTATTTGA+TGG - chr3_4:63281178-63281197 Msa0513080:CDS 40.0%
! TTGACTCGTAGGCGAAAAAT+GGG + chr3_4:63281214-63281233 None:intergenic 40.0%
! TTTGACTCGTAGGCGAAAAA+TGG + chr3_4:63281215-63281234 None:intergenic 40.0%
TCAATACAACGACGTTAGAG+TGG - chr3_4:63281367-63281386 Msa0513080:CDS 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG - chr3_4:63281382-63281401 Msa0513080:CDS 40.0%
TCATCACTATCACCTTTCGA+AGG + chr3_4:63281413-63281432 None:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG - chr3_4:63281412-63281431 Msa0513080:CDS 40.0%
! AAAGGTGATAGTGATGAGGT+GGG - chr3_4:63281416-63281435 Msa0513080:CDS 40.0%
AAGAAGATTCTGAACAACGG+TGG - chr3_4:63281482-63281501 Msa0513080:CDS 40.0%
AGAAGATTCTGAACAACGGT+GGG - chr3_4:63281483-63281502 Msa0513080:CDS 40.0%
ATTCGCATTCGGTCTTAAAG+GGG + chr3_4:63281510-63281529 None:intergenic 40.0%
GATTCGCATTCGGTCTTAAA+GGG + chr3_4:63281511-63281530 None:intergenic 40.0%
AGATTCGCATTCGGTCTTAA+AGG + chr3_4:63281512-63281531 None:intergenic 40.0%
TAAACGGTCAGATTCGCATT+CGG + chr3_4:63281521-63281540 None:intergenic 40.0%
!! CCAAAATTCCTCTCTGAAGT+AGG + chr3_4:63281581-63281600 None:intergenic 40.0%
! CCTACTTCAGAGAGGAATTT+TGG - chr3_4:63281578-63281597 Msa0513080:CDS 40.0%
TTATGATGTCCCGTTTACTG+TGG - chr3_4:63281628-63281647 Msa0513080:CDS 40.0%
TCATTATCTTGGGTGTGTCT+AGG - chr3_4:63281776-63281795 Msa0513080:intron 40.0%
ATGAGTAGACGATGCATGGT+GGG + chr3_4:63280330-63280349 None:intergenic 45.0%
AATGAGTAGACGATGCATGG+TGG + chr3_4:63280331-63280350 None:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG + chr3_4:63280358-63280377 None:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG + chr3_4:63280362-63280381 None:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG + chr3_4:63280370-63280389 None:intergenic 45.0%
GAAGCAATACCTGCAAGTAG+TGG + chr3_4:63280387-63280406 None:intergenic 45.0%
AAGATGGTGAAGAAGTGGCA+TGG + chr3_4:63280409-63280428 None:intergenic 45.0%
CTACTTTGAATGCTGAGGGT+AGG + chr3_4:63280719-63280738 None:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG + chr3_4:63280811-63280830 None:intergenic 45.0%
! GGTTACTTTGATTCCGGATC+CGG + chr3_4:63280817-63280836 None:intergenic 45.0%
AGAAGAGTTGTTCGTTTGGG+AGG + chr3_4:63280845-63280864 None:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG + chr3_4:63280874-63280893 None:intergenic 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG + chr3_4:63280893-63280912 None:intergenic 45.0%
!!! CTTCTATTTGGGTTTTGGGG+TGG + chr3_4:63280926-63280945 None:intergenic 45.0%
! CGTCGGTAATGAAGTTTTCG+TGG - chr3_4:63280953-63280972 Msa0513080:CDS 45.0%
CCAATCGCTTTATCTGCTCT+CGG - chr3_4:63281074-63281093 Msa0513080:CDS 45.0%
TCCTCTTATCCGTCTTCAAC+CGG - chr3_4:63281098-63281117 Msa0513080:CDS 45.0%
TTGAATGACCCGGTTGAAGA+CGG + chr3_4:63281110-63281129 None:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG + chr3_4:63281161-63281180 None:intergenic 45.0%
!! CGCTTTGTTTCGTGAAAACC+CGG - chr3_4:63281259-63281278 Msa0513080:CDS 45.0%
!! GCTTTGTTTCGTGAAAACCC+GGG - chr3_4:63281260-63281279 Msa0513080:CDS 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG - chr3_4:63281383-63281402 Msa0513080:CDS 45.0%
! GAAAGGTGATAGTGATGAGG+TGG - chr3_4:63281415-63281434 Msa0513080:CDS 45.0%
GAAGAGTTACCGTGACGTTT+CGG - chr3_4:63281658-63281677 Msa0513080:CDS 45.0%
!! AGATTTGTTGGGGGAAGCAA+AGG - chr3_4:63281923-63281942 Msa0513080:intron 45.0%
GCAACTTTCACTACACATGG+AGG + chr3_4:63281965-63281984 None:intergenic 45.0%
CGTGCAACTTTCACTACACA+TGG + chr3_4:63281968-63281987 None:intergenic 45.0%
ATGAGTAGACGATGCATGGT+GGG + chr3_4:63280330-63280349 None:intergenic 45.0%
AATGAGTAGACGATGCATGG+TGG + chr3_4:63280331-63280350 None:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG + chr3_4:63280358-63280377 None:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG + chr3_4:63280362-63280381 None:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG + chr3_4:63280370-63280389 None:intergenic 45.0%
GAAGCAATACCTGCAAGTAG+TGG + chr3_4:63280387-63280406 None:intergenic 45.0%
AAGATGGTGAAGAAGTGGCA+TGG + chr3_4:63280409-63280428 None:intergenic 45.0%
CTACTTTGAATGCTGAGGGT+AGG + chr3_4:63280719-63280738 None:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG + chr3_4:63280811-63280830 None:intergenic 45.0%
! GGTTACTTTGATTCCGGATC+CGG + chr3_4:63280817-63280836 None:intergenic 45.0%
AGAAGAGTTGTTCGTTTGGG+AGG + chr3_4:63280845-63280864 None:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG + chr3_4:63280874-63280893 None:intergenic 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG + chr3_4:63280893-63280912 None:intergenic 45.0%
!!! CTTCTATTTGGGTTTTGGGG+TGG + chr3_4:63280926-63280945 None:intergenic 45.0%
! CGTCGGTAATGAAGTTTTCG+TGG - chr3_4:63280953-63280972 Msa0513080:CDS 45.0%
CCAATCGCTTTATCTGCTCT+CGG - chr3_4:63281074-63281093 Msa0513080:CDS 45.0%
TCCTCTTATCCGTCTTCAAC+CGG - chr3_4:63281098-63281117 Msa0513080:CDS 45.0%
TTGAATGACCCGGTTGAAGA+CGG + chr3_4:63281110-63281129 None:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG + chr3_4:63281161-63281180 None:intergenic 45.0%
!! CGCTTTGTTTCGTGAAAACC+CGG - chr3_4:63281259-63281278 Msa0513080:CDS 45.0%
!! GCTTTGTTTCGTGAAAACCC+GGG - chr3_4:63281260-63281279 Msa0513080:CDS 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG - chr3_4:63281383-63281402 Msa0513080:CDS 45.0%
! GAAAGGTGATAGTGATGAGG+TGG - chr3_4:63281415-63281434 Msa0513080:CDS 45.0%
GAAGAGTTACCGTGACGTTT+CGG - chr3_4:63281658-63281677 Msa0513080:CDS 45.0%
!! AGATTTGTTGGGGGAAGCAA+AGG - chr3_4:63281923-63281942 Msa0513080:intron 45.0%
GCAACTTTCACTACACATGG+AGG + chr3_4:63281965-63281984 None:intergenic 45.0%
CGTGCAACTTTCACTACACA+TGG + chr3_4:63281968-63281987 None:intergenic 45.0%
! AGACGATGCATGGTGGGATA+GGG + chr3_4:63280324-63280343 None:intergenic 50.0%
! TAGACGATGCATGGTGGGAT+AGG + chr3_4:63280325-63280344 None:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG + chr3_4:63280377-63280396 None:intergenic 50.0%
CTCTCACTTCCACTACTTGC+AGG - chr3_4:63280375-63280394 Msa0513080:three_prime_UTR 50.0%
GCGACCATAGTTCACTCCAA+TGG + chr3_4:63280685-63280704 None:intergenic 50.0%
AACTTTCCTACGCCCTCACA+TGG - chr3_4:63280877-63280896 Msa0513080:CDS 50.0%
GACGGCGATGGCTTCTATTT+GGG + chr3_4:63280937-63280956 None:intergenic 50.0%
CAAATAGAAGCCATCGCCGT+CGG - chr3_4:63280936-63280955 Msa0513080:CDS 50.0%
AACTTCATTACCGACGGCGA+TGG + chr3_4:63280949-63280968 None:intergenic 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG + chr3_4:63281001-63281020 None:intergenic 50.0%
CCGAGAGCAGATAAAGCGAT+TGG + chr3_4:63281077-63281096 None:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG - chr3_4:63281099-63281118 Msa0513080:CDS 50.0%
GAGATCGGGTTTGAATGACC+CGG + chr3_4:63281120-63281139 None:intergenic 50.0%
AATACGACGACGTTTCACGG+AGG + chr3_4:63281175-63281194 None:intergenic 50.0%
! AACGTCAGCGTTTGACTCGT+AGG + chr3_4:63281225-63281244 None:intergenic 50.0%
TCGTGAAAACCCGGGTAATG+TGG - chr3_4:63281268-63281287 Msa0513080:CDS 50.0%
AAACCCGGGTAATGTGGATC+CGG - chr3_4:63281274-63281293 Msa0513080:CDS 50.0%
TTACCCGGATCCACATTACC+CGG + chr3_4:63281281-63281300 None:intergenic 50.0%
GGTAATGTGGATCCGGGTAA+CGG - chr3_4:63281281-63281300 Msa0513080:CDS 50.0%
GTAATGTGGATCCGGGTAAC+GGG - chr3_4:63281282-63281301 Msa0513080:CDS 50.0%
TGGTTGTGAGTGAAACGGGT+TGG - chr3_4:63281387-63281406 Msa0513080:CDS 50.0%
AAGTGGGACCTACTTCAGAG+AGG - chr3_4:63281570-63281589 Msa0513080:CDS 50.0%
TGATGTCCCGTTTACTGTGG+CGG - chr3_4:63281631-63281650 Msa0513080:CDS 50.0%
TTCAACCCCGCCACAGTAAA+CGG + chr3_4:63281641-63281660 None:intergenic 50.0%
! AGACGATGCATGGTGGGATA+GGG + chr3_4:63280324-63280343 None:intergenic 50.0%
! TAGACGATGCATGGTGGGAT+AGG + chr3_4:63280325-63280344 None:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG + chr3_4:63280377-63280396 None:intergenic 50.0%
CTCTCACTTCCACTACTTGC+AGG - chr3_4:63280375-63280394 Msa0513080:three_prime_UTR 50.0%
GCGACCATAGTTCACTCCAA+TGG + chr3_4:63280685-63280704 None:intergenic 50.0%
AACTTTCCTACGCCCTCACA+TGG - chr3_4:63280877-63280896 Msa0513080:CDS 50.0%
GACGGCGATGGCTTCTATTT+GGG + chr3_4:63280937-63280956 None:intergenic 50.0%
CAAATAGAAGCCATCGCCGT+CGG - chr3_4:63280936-63280955 Msa0513080:CDS 50.0%
AACTTCATTACCGACGGCGA+TGG + chr3_4:63280949-63280968 None:intergenic 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG + chr3_4:63281001-63281020 None:intergenic 50.0%
CCGAGAGCAGATAAAGCGAT+TGG + chr3_4:63281077-63281096 None:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG - chr3_4:63281099-63281118 Msa0513080:CDS 50.0%
GAGATCGGGTTTGAATGACC+CGG + chr3_4:63281120-63281139 None:intergenic 50.0%
AATACGACGACGTTTCACGG+AGG + chr3_4:63281175-63281194 None:intergenic 50.0%
! AACGTCAGCGTTTGACTCGT+AGG + chr3_4:63281225-63281244 None:intergenic 50.0%
TCGTGAAAACCCGGGTAATG+TGG - chr3_4:63281268-63281287 Msa0513080:CDS 50.0%
AAACCCGGGTAATGTGGATC+CGG - chr3_4:63281274-63281293 Msa0513080:CDS 50.0%
TTACCCGGATCCACATTACC+CGG + chr3_4:63281281-63281300 None:intergenic 50.0%
GGTAATGTGGATCCGGGTAA+CGG - chr3_4:63281281-63281300 Msa0513080:CDS 50.0%
GTAATGTGGATCCGGGTAAC+GGG - chr3_4:63281282-63281301 Msa0513080:CDS 50.0%
TGGTTGTGAGTGAAACGGGT+TGG - chr3_4:63281387-63281406 Msa0513080:CDS 50.0%
AAGTGGGACCTACTTCAGAG+AGG - chr3_4:63281570-63281589 Msa0513080:CDS 50.0%
TGATGTCCCGTTTACTGTGG+CGG - chr3_4:63281631-63281650 Msa0513080:CDS 50.0%
TTCAACCCCGCCACAGTAAA+CGG + chr3_4:63281641-63281660 None:intergenic 50.0%
!! CGGTGTCGTAGAGTTTGACC+CGG + chr3_4:63280770-63280789 None:intergenic 55.0%
CAAACTCTACGACACCGACC+CGG - chr3_4:63280773-63280792 Msa0513080:CDS 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG + chr3_4:63280790-63280809 None:intergenic 55.0%
CGACGGCGATGGCTTCTATT+TGG + chr3_4:63280938-63280957 None:intergenic 55.0%
! CATGGCGGGGATGAGGTATT+TGG + chr3_4:63280994-63281013 None:intergenic 55.0%
CCCGGTTGAAGACGGATAAG+AGG + chr3_4:63281102-63281121 None:intergenic 55.0%
AACCCGGGTAATGTGGATCC+GGG - chr3_4:63281275-63281294 Msa0513080:CDS 55.0%
TACCCGGATCCACATTACCC+GGG + chr3_4:63281280-63281299 None:intergenic 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG - chr3_4:63281398-63281417 Msa0513080:CDS 55.0%
TTGTACGCAGCAGCGTTCTG+CGG + chr3_4:63281449-63281468 None:intergenic 55.0%
CAGAACGCTGCTGCGTACAA+CGG - chr3_4:63281449-63281468 Msa0513080:CDS 55.0%
GATGTCCCGTTTACTGTGGC+GGG - chr3_4:63281632-63281651 Msa0513080:CDS 55.0%
ATGTCCCGTTTACTGTGGCG+GGG - chr3_4:63281633-63281652 Msa0513080:CDS 55.0%
TCAACCCCGCCACAGTAAAC+GGG + chr3_4:63281640-63281659 None:intergenic 55.0%
TCTTGGGTGTGTCTAGGTCG+AGG - chr3_4:63281782-63281801 Msa0513080:intron 55.0%
!! CGGTGTCGTAGAGTTTGACC+CGG + chr3_4:63280770-63280789 None:intergenic 55.0%
CAAACTCTACGACACCGACC+CGG - chr3_4:63280773-63280792 Msa0513080:CDS 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG + chr3_4:63280790-63280809 None:intergenic 55.0%
CGACGGCGATGGCTTCTATT+TGG + chr3_4:63280938-63280957 None:intergenic 55.0%
! CATGGCGGGGATGAGGTATT+TGG + chr3_4:63280994-63281013 None:intergenic 55.0%
CCCGGTTGAAGACGGATAAG+AGG + chr3_4:63281102-63281121 None:intergenic 55.0%
AACCCGGGTAATGTGGATCC+GGG - chr3_4:63281275-63281294 Msa0513080:CDS 55.0%
TACCCGGATCCACATTACCC+GGG + chr3_4:63281280-63281299 None:intergenic 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG - chr3_4:63281398-63281417 Msa0513080:CDS 55.0%
TTGTACGCAGCAGCGTTCTG+CGG + chr3_4:63281449-63281468 None:intergenic 55.0%
CAGAACGCTGCTGCGTACAA+CGG - chr3_4:63281449-63281468 Msa0513080:CDS 55.0%
GATGTCCCGTTTACTGTGGC+GGG - chr3_4:63281632-63281651 Msa0513080:CDS 55.0%
ATGTCCCGTTTACTGTGGCG+GGG - chr3_4:63281633-63281652 Msa0513080:CDS 55.0%
TCAACCCCGCCACAGTAAAC+GGG + chr3_4:63281640-63281659 None:intergenic 55.0%
TCTTGGGTGTGTCTAGGTCG+AGG - chr3_4:63281782-63281801 Msa0513080:intron 55.0%
! TTGGAGCCATGTGAGGGCGT+AGG + chr3_4:63280886-63280905 None:intergenic 60.0%
! GGCGGGGATGAGGTATTTGG+TGG + chr3_4:63280991-63281010 None:intergenic 60.0%
TGTACGCAGCAGCGTTCTGC+GGG + chr3_4:63281448-63281467 None:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG - chr3_4:63281664-63281683 Msa0513080:CDS 60.0%
AGTTCTGCTCAGCCGCTTCC+CGG + chr3_4:63281686-63281705 None:intergenic 60.0%
! TTGGAGCCATGTGAGGGCGT+AGG + chr3_4:63280886-63280905 None:intergenic 60.0%
! GGCGGGGATGAGGTATTTGG+TGG + chr3_4:63280991-63281010 None:intergenic 60.0%
TGTACGCAGCAGCGTTCTGC+GGG + chr3_4:63281448-63281467 None:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG - chr3_4:63281664-63281683 Msa0513080:CDS 60.0%
AGTTCTGCTCAGCCGCTTCC+CGG + chr3_4:63281686-63281705 None:intergenic 60.0%
GTACGCAGCAGCGTTCTGCG+GGG + chr3_4:63281447-63281466 None:intergenic 65.0%
TACCGTGACGTTTCGGCGCC+GGG - chr3_4:63281665-63281684 Msa0513080:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG + chr3_4:63281670-63281689 None:intergenic 65.0%
GTACGCAGCAGCGTTCTGCG+GGG + chr3_4:63281447-63281466 None:intergenic 65.0%
TACCGTGACGTTTCGGCGCC+GGG - chr3_4:63281665-63281684 Msa0513080:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG + chr3_4:63281670-63281689 None:intergenic 65.0%
! GACGTTTCGGCGCCGGGAAG+CGG - chr3_4:63281671-63281690 Msa0513080:CDS 70.0%
! GACGTTTCGGCGCCGGGAAG+CGG - chr3_4:63281671-63281690 Msa0513080:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 63280297 63282094 63280297 ID=Msa0513080;Name=Msa0513080
chr3_4 mRNA 63280297 63282094 63280297 ID=Msa0513080-mRNA-1;Parent=Msa0513080;Name=Msa0513080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=36|1|1|1|1|1|2|397|362
chr3_4 exon 63280297 63281718 63280297 ID=Msa0513080-mRNA-1:exon:15777;Parent=Msa0513080-mRNA-1
chr3_4 exon 63281995 63282094 63281995 ID=Msa0513080-mRNA-1:exon:15776;Parent=Msa0513080-mRNA-1
chr3_4 five_prime_UTR 63282059 63282094 63282059 ID=Msa0513080-mRNA-1:five_prime_utr;Parent=Msa0513080-mRNA-1
chr3_4 CDS 63281995 63282058 63281995 ID=Msa0513080-mRNA-1:cds;Parent=Msa0513080-mRNA-1
chr3_4 CDS 63280694 63281718 63280694 ID=Msa0513080-mRNA-1:cds;Parent=Msa0513080-mRNA-1
chr3_4 three_prime_UTR 63280297 63280693 63280297 ID=Msa0513080-mRNA-1:three_prime_utr;Parent=Msa0513080-mRNA-1
Gene Sequence

>Msa0513080

ATGCATCGTCTACTCATTCTTTCCATCCTCATTTCCTCATACCTCTCACTTCCACTACTTGCAGATGGTAATTCCATTGGAGTGAACTATGGTCGCATAGCAAACAACCTACCCTCAGCATTCAAAGTAGTTAAGCTTCTAAAATCACAAGGAATCGACCGGGTCAAACTCTACGACACCGACCCGGCCGTTCTAAAATCCTTATCCGGATCCGGAATCAAAGTAACCGTAAACCTCCCAAACGAACAACTCTTCTATACAGCCAAAAAACTTTCCTACGCCCTCACATGGCTCCAAAAAAACGTCGTCGTTTACCACCCCAAAACCCAAATAGAAGCCATCGCCGTCGGTAATGAAGTTTTCGTGGACACACACAACACCACCAAATACCTCATCCCCGCCATGAAAAACATTCACAAAGCTTTAATCAAATTCAACCTCCACAATTCCATCAAAATCTCTTCACCAATCGCTTTATCTGCTCTCGGATCCTCTTATCCGTCTTCAACCGGGTCATTCAAACCCGATCTCATAGAACCCGTAATTAAACCAATGCTAAACTTCCTCCGTGAAACGTCGTCGTATTTGATGGTCAACGTTTACCCATTTTTCGCCTACGAGTCAAACGCTGACGTTATTTCTTTAAACTACGCTTTGTTTCGTGAAAACCCGGGTAATGTGGATCCGGGTAACGGGTTAAAATATTACAACATCTTCGACGCACAAATCGACGCTGTTTTTGCAGCGCTTAACAAGCTTCAATACAACGACGTTAGAGTGGTTGTGAGTGAAACGGGTTGGCCTTCGAAAGGTGATAGTGATGAGGTGGGTGCATCCCCGCAGAACGCTGCTGCGTACAACGGTAATCTTGTTAAGAAGATTCTGAACAACGGTGGGACCCCTTTAAGACCGAATGCGAATCTGACCGTTTATTTATTTGCGCTTTTTAATGAAAATGGGAAAGTGGGACCTACTTCAGAGAGGAATTTTGGGATGTTTTATCCTGATATGAAGAAAGTTTATGATGTCCCGTTTACTGTGGCGGGGTTGAAGAGTTACCGTGACGTTTCGGCGCCGGGAAGCGGCTGA

Protein sequence

>Msa0513080

MHRLLILSILISSYLSLPLLADGNSIGVNYGRIANNLPSAFKVVKLLKSQGIDRVKLYDTDPAVLKSLSGSGIKVTVNLPNEQLFYTAKKLSYALTWLQKNVVVYHPKTQIEAIAVGNEVFVDTHNTTKYLIPAMKNIHKALIKFNLHNSIKISSPIALSALGSSYPSSTGSFKPDLIEPVIKPMLNFLRETSSYLMVNVYPFFAYESNADVISLNYALFRENPGNVDPGNGLKYYNIFDAQIDAVFAALNKLQYNDVRVVVSETGWPSKGDSDEVGASPQNAAAYNGNLVKKILNNGGTPLRPNANLTVYLFALFNENGKVGPTSERNFGMFYPDMKKVYDVPFTVAGLKSYRDVSAPGSG*