Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481920 | AFK34419.1 | 90.734 | 259 | 19 | 1 | 70 | 323 | 30 | 288 | 1.61e-153 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481920 | I3S2C7 | 90.734 | 259 | 19 | 1 | 70 | 323 | 30 | 288 | 7.68e-154 | 442 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030310 | Msa0481920 | 0.815905 | 7.276592e-52 | -8.615850e-47 |
| Msa0143080 | Msa0481920 | 0.818881 | 1.555196e-52 | -8.615850e-47 |
| Msa0194970 | Msa0481920 | 0.813485 | 2.500025e-51 | -8.615850e-47 |
| Msa0236980 | Msa0481920 | 0.820643 | 6.154977e-53 | -8.615850e-47 |
| Msa0411520 | Msa0481920 | 0.812055 | 5.139232e-51 | -8.615850e-47 |
| Msa0481920 | Msa0642650 | 0.801055 | 1.078729e-48 | -8.615850e-47 |
| Msa0481920 | Msa0775260 | 0.812574 | 3.959202e-51 | -8.615850e-47 |
| Msa0481920 | Msa0852730 | 0.821178 | 4.635560e-53 | -8.615850e-47 |
| Msa0481920 | Msa0922540 | 0.824073 | 9.835284e-54 | -8.615850e-47 |
| Msa0481920 | Msa0942730 | 0.822343 | 2.492052e-53 | -8.615850e-47 |
| Msa0481920 | Msa1092820 | 0.801351 | 9.381552e-49 | -8.615850e-47 |
| Msa0481920 | Msa1224670 | 0.813620 | 2.333871e-51 | -8.615850e-47 |
| Msa0481920 | Msa1382310 | 0.801724 | 7.867805e-49 | -8.615850e-47 |
| Msa0481920 | Msa1444450 | 0.801001 | 1.106370e-48 | -8.615850e-47 |
| Msa0328210 | Msa0481920 | 0.807746 | 4.347993e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481920 | MtrunA17_Chr3g0110241 | 90.734 | 259 | 19 | 1 | 70 | 323 | 278 | 536 | 1.94e-153 | 441 |
| Msa0481920 | MtrunA17_Chr3g0102791 | 79.762 | 84 | 4 | 2 | 1 | 83 | 1 | 72 | 7.53e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481920 | AT5G37590.1 | 45.175 | 228 | 122 | 3 | 84 | 310 | 297 | 522 | 1.01e-55 | 190 |
| Msa0481920 | AT5G37590.2 | 44.242 | 165 | 92 | 0 | 84 | 248 | 297 | 461 | 4.20e-37 | 139 |
Find 96 sgRNAs with CRISPR-Local
Find 521 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATGATATGGTTGCGAAAT+TGG | 0.106467 | 3_3:-88308195 | None:intergenic |
| TCATTTACCTGGTGGTAATT+TGG | 0.111148 | 3_3:-88310423 | None:intergenic |
| AGATATTCGTTCTTTATTTC+AGG | 0.202945 | 3_3:-88316923 | None:intergenic |
| ATGATGTTTGATTCAGCTTT+TGG | 0.211528 | 3_3:-88317003 | None:intergenic |
| GGTCGAATTATGGATGAATT+TGG | 0.218500 | 3_3:-88308173 | None:intergenic |
| TGCAAGGTCTCTGAAATTTC+GGG | 0.224213 | 3_3:+88308071 | Msa0481920:five_prime_UTR |
| TTGCAAGGTCTCTGAAATTT+CGG | 0.241226 | 3_3:+88308070 | Msa0481920:five_prime_UTR |
| GGAAGAATTGCAGGAGATTC+AGG | 0.248308 | 3_3:+88315179 | Msa0481920:CDS |
| CATTTACCTGGTGGTAATTT+GGG | 0.261244 | 3_3:-88310422 | None:intergenic |
| TGCGAAATTGGGTCGAATTA+TGG | 0.278971 | 3_3:-88308183 | None:intergenic |
| CCAAGCAGCACTTGTCATAT+TGG | 0.295451 | 3_3:+88314992 | Msa0481920:CDS |
| TCCTCTTCCAAACCATTGTT+AGG | 0.313054 | 3_3:+88308125 | Msa0481920:five_prime_UTR |
| TTGAGAATTCCATTATATTC+AGG | 0.319020 | 3_3:-88312467 | None:intergenic |
| ACTTCCTGGAGATCATATTC+AGG | 0.329597 | 3_3:+88313220 | Msa0481920:CDS |
| ATTTCAGAGACCTTGCAAAT+TGG | 0.334767 | 3_3:-88308065 | None:intergenic |
| TAAATATACCACACGCAATA+AGG | 0.338190 | 3_3:+88317091 | Msa0481920:three_prime_UTR |
| GTTCTTTATTTCAGGGTAAT+CGG | 0.348615 | 3_3:-88316915 | None:intergenic |
| TATAATATGTGCTGCAGCTT+TGG | 0.349585 | 3_3:+88311409 | Msa0481920:CDS |
| GAGAAAGATCCTGAATATAA+TGG | 0.352099 | 3_3:+88312458 | Msa0481920:CDS |
| GTTCGGAGAGCCTTACTTCC+TGG | 0.359187 | 3_3:+88313206 | Msa0481920:CDS |
| CAGAAGATGCTTGTAGGGTC+AGG | 0.379028 | 3_3:-88313055 | None:intergenic |
| TTGAAACCCTAACAATGGTT+TGG | 0.393778 | 3_3:-88308132 | None:intergenic |
| TTATATTCAGGATCTTTCTC+TGG | 0.396404 | 3_3:-88312455 | None:intergenic |
| CAATATGACAAGTGCTGCTT+GGG | 0.399276 | 3_3:-88314991 | None:intergenic |
| TTGTTTCAGAAGATGCTTGT+AGG | 0.401174 | 3_3:-88313061 | None:intergenic |
| TATGATATGGTTGCGAAATT+GGG | 0.410832 | 3_3:-88308194 | None:intergenic |
| TTGCTTGGCAATAAACTTGA+TGG | 0.416960 | 3_3:+88316971 | Msa0481920:CDS |
| GGATAGCTTCAGAAGCAGTT+TGG | 0.418939 | 3_3:-88308095 | None:intergenic |
| AGCACAATTGCCTCGGCTCT+TGG | 0.420644 | 3_3:+88317114 | Msa0481920:three_prime_UTR |
| GTTGGCTAAGGAAGAATTGC+AGG | 0.426289 | 3_3:+88315170 | Msa0481920:CDS |
| CTTGTAGATGTCTCGAGGTT+CGG | 0.428878 | 3_3:+88313189 | Msa0481920:intron |
| TGTAAGCAGCGATGCATTGA+AGG | 0.435552 | 3_3:-88316566 | None:intergenic |
| CCAATATGACAAGTGCTGCT+TGG | 0.442986 | 3_3:-88314992 | None:intergenic |
| TTAACAGTCCGTAGTCCTCT+TGG | 0.444264 | 3_3:-88311317 | None:intergenic |
| ATTATTTACATAATTCCATA+AGG | 0.447464 | 3_3:+88313583 | Msa0481920:CDS |
| CCTCTTCCAAACCATTGTTA+GGG | 0.453171 | 3_3:+88308126 | Msa0481920:five_prime_UTR |
| AATATGATCTCCAGGAAGTA+AGG | 0.453556 | 3_3:-88313216 | None:intergenic |
| AGTTATTGCAGCTGAATCCT+TGG | 0.460876 | 3_3:+88313031 | Msa0481920:CDS |
| TACTCTATCATCGGTGGAGT+TGG | 0.462273 | 3_3:+88315152 | Msa0481920:CDS |
| GATATTCGTTCTTTATTTCA+GGG | 0.463315 | 3_3:-88316922 | None:intergenic |
| TTAACAGTCCGTAGTCCTCT+TGG | 0.463947 | 3_3:-88311281 | None:intergenic |
| AAGCGTGCTCAAAGCTTGCT+TGG | 0.463949 | 3_3:+88316956 | Msa0481920:CDS |
| GTACCACGCGGAATCGTTGA+TGG | 0.480630 | 3_3:-88308250 | None:intergenic |
| TGTTTCAGAAGATGCTTGTA+GGG | 0.486266 | 3_3:-88313060 | None:intergenic |
| CCACTCTTGCAAGATGAAGT+AGG | 0.497488 | 3_3:-88313488 | None:intergenic |
| CAAACCTGAATATGATCTCC+AGG | 0.506112 | 3_3:-88313224 | None:intergenic |
| ATGAGCCGAAAACTATGATA+TGG | 0.515263 | 3_3:-88308207 | None:intergenic |
| CCCTAACAATGGTTTGGAAG+AGG | 0.519784 | 3_3:-88308126 | None:intergenic |
| TTCCTCCTGCACACCAATGT+TGG | 0.521105 | 3_3:+88310376 | Msa0481920:exon |
| AGTAGCCAACATTGGTGTGC+AGG | 0.522326 | 3_3:-88310381 | None:intergenic |
| ATCATCGGTGGAGTTGGCTA+AGG | 0.522722 | 3_3:+88315158 | Msa0481920:CDS |
| TGCTTGTAGGGTCAGGGCCA+AGG | 0.526372 | 3_3:-88313048 | None:intergenic |
| AGGGTTTCAAATTTCTCACT+CGG | 0.531778 | 3_3:+88308145 | Msa0481920:five_prime_UTR |
| TATTAACCTTGAGGCTAAAG+AGG | 0.538733 | 3_3:+88316539 | Msa0481920:CDS |
| AATCAAAAGAGCTTCTTGAA+AGG | 0.544707 | 3_3:+88313087 | Msa0481920:CDS |
| CCTACTTCATCTTGCAAGAG+TGG | 0.547747 | 3_3:+88313488 | Msa0481920:CDS |
| GGCAATAAACTTGATGGAGA+AGG | 0.548221 | 3_3:+88316977 | Msa0481920:CDS |
| TTAAATTTCCAAGAGGACTA+CGG | 0.552642 | 3_3:+88311273 | Msa0481920:CDS |
| TTAAATTTCCAAGAGGACTA+CGG | 0.552642 | 3_3:+88311309 | Msa0481920:CDS |
| AGAAGATGCTTGTAGGGTCA+GGG | 0.556526 | 3_3:-88313054 | None:intergenic |
| TGTGCGTGGACATACTAGTA+AGG | 0.557790 | 3_3:+88314965 | Msa0481920:CDS |
| ACACAGTTTCCACATGGTAG+AGG | 0.560771 | 3_3:+88311362 | Msa0481920:CDS |
| ATCGTTGATGGATTACGATA+CGG | 0.566139 | 3_3:-88308238 | None:intergenic |
| GGAGTGCCTCTTTAGCCTCA+AGG | 0.571269 | 3_3:-88316545 | None:intergenic |
| ATCACTCAGTACTCTATCAT+CGG | 0.573902 | 3_3:+88315143 | Msa0481920:CDS |
| TAGAGGAACTCGTTCTACTC+AGG | 0.576586 | 3_3:+88311379 | Msa0481920:CDS |
| GAATATAATGGAATTCTCAA+AGG | 0.576924 | 3_3:+88312470 | Msa0481920:CDS |
| GAAATTTGAAACCCTAACAA+TGG | 0.577367 | 3_3:-88308137 | None:intergenic |
| AGCTGAGCTTGATATAGCAA+AGG | 0.580713 | 3_3:+88313560 | Msa0481920:CDS |
| TCTCTCTTGTAGATGTCTCG+AGG | 0.589360 | 3_3:+88313184 | Msa0481920:intron |
| CTGAATCAAACATCATGAAG+AGG | 0.589423 | 3_3:+88317010 | Msa0481920:exon |
| AGCCAACATTGGTGTGCAGG+AGG | 0.598016 | 3_3:-88310378 | None:intergenic |
| TCGTCTTGATGACGCTGAGA+TGG | 0.602862 | 3_3:+88312431 | Msa0481920:CDS |
| AGATATGGTGCCAATTTGCA+AGG | 0.603964 | 3_3:+88308055 | None:intergenic |
| GGTTTGGAAGAGGAAGATGA+TGG | 0.604828 | 3_3:-88308116 | None:intergenic |
| AATAAGGAGCACAATTGCCT+CGG | 0.605287 | 3_3:+88317107 | Msa0481920:three_prime_UTR |
| CTTTCTGACACCAAGAGCCG+AGG | 0.605347 | 3_3:-88317124 | None:intergenic |
| AATACAGGGATGGAAATCGT+TGG | 0.608242 | 3_3:+88313004 | Msa0481920:intron |
| AATACAGTTAAATTTCCAAG+AGG | 0.616988 | 3_3:+88311302 | Msa0481920:CDS |
| TCGAAGAAAACTAGTGTGCG+TGG | 0.616999 | 3_3:+88314951 | Msa0481920:CDS |
| TCTACAGTTAAATTTCCAAG+AGG | 0.623564 | 3_3:+88311266 | Msa0481920:CDS |
| GCAAGGTCTCTGAAATTTCG+GGG | 0.627819 | 3_3:+88308072 | Msa0481920:five_prime_UTR |
| GGCCACTGTGTGGAAGAGAA+TGG | 0.636980 | 3_3:+88311239 | Msa0481920:CDS |
| ATTGTGCTCCTTATTGCGTG+TGG | 0.642314 | 3_3:-88317099 | None:intergenic |
| TCTTTGCCCAAATTACCACC+AGG | 0.643884 | 3_3:+88310416 | Msa0481920:CDS |
| ACTCAGTACTCTATCATCGG+TGG | 0.648209 | 3_3:+88315146 | Msa0481920:CDS |
| GTGTGCACAGTGAGAAGAGG+TGG | 0.650924 | 3_3:+88311218 | Msa0481920:intron |
| TTTGTGTGCACAGTGAGAAG+AGG | 0.656598 | 3_3:+88311215 | Msa0481920:intron |
| ACTGCACTAGTAGCCAACAT+TGG | 0.665642 | 3_3:-88310389 | None:intergenic |
| GAAAGGGGATATTAACCTTG+AGG | 0.668201 | 3_3:+88316530 | Msa0481920:intron |
| ATGCATCGCTGCTTACAATG+AGG | 0.673879 | 3_3:+88316572 | Msa0481920:CDS |
| GAGAAGAGGTGGCCACTGTG+TGG | 0.687254 | 3_3:+88311229 | Msa0481920:CDS |
| GAACGAGTTCCTCTACCATG+TGG | 0.701280 | 3_3:-88311371 | None:intergenic |
| AGTTGTACACAGTTTCCACA+TGG | 0.705945 | 3_3:+88311356 | Msa0481920:CDS |
| CACCATTCTCTTCCACACAG+TGG | 0.743076 | 3_3:-88311241 | None:intergenic |
| AATCCATCAACGATTCCGCG+TGG | 0.764571 | 3_3:+88308247 | Msa0481920:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAATTTAATAAATGATT+TGG | + | chr3_3:88308631-88308650 | Msa0481920:intron | 10.0% |
| !!! | TCTTAATATAATTTTAGATT+AGG | + | chr3_3:88309239-88309258 | Msa0481920:intron | 10.0% |
| !!! | AAATTCATTTTTTTCATTAA+CGG | + | chr3_3:88312529-88312548 | Msa0481920:intron | 10.0% |
| !! | TATTGTAATTATAGAAATAT+GGG | + | chr3_3:88312732-88312751 | Msa0481920:intron | 10.0% |
| !!! | ACATAATAATAATTTGATTT+AGG | - | chr3_3:88313662-88313681 | None:intergenic | 10.0% |
| !! | AAAAAATATATATTCATAAG+GGG | + | chr3_3:88316122-88316141 | Msa0481920:intron | 10.0% |
| !! | ATATACTGATATTAAAGAAA+TGG | - | chr3_3:88308290-88308309 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTAATGCACTTT+TGG | + | chr3_3:88308556-88308575 | Msa0481920:intron | 15.0% |
| !! | ATTATGATATTATCATATTC+TGG | + | chr3_3:88309187-88309206 | Msa0481920:intron | 15.0% |
| !!! | CAGTTTTTCTATTTTAAAAT+AGG | - | chr3_3:88309573-88309592 | None:intergenic | 15.0% |
| !! | TTATGATTACTGTATAAATT+GGG | + | chr3_3:88309969-88309988 | Msa0481920:intron | 15.0% |
| !!! | AATTGATAACAAATTCTAAA+AGG | - | chr3_3:88310256-88310275 | None:intergenic | 15.0% |
| !!! | ATTTTATCTTTTATCTTCTT+CGG | + | chr3_3:88310301-88310320 | Msa0481920:intron | 15.0% |
| !! | TAAATTGAGACATAATATTT+AGG | + | chr3_3:88310475-88310494 | Msa0481920:intron | 15.0% |
| !! | TTAGTAATACATGAAATTAA+GGG | - | chr3_3:88312148-88312167 | None:intergenic | 15.0% |
| !! | ATTAGTAATACATGAAATTA+AGG | - | chr3_3:88312149-88312168 | None:intergenic | 15.0% |
| !! | NNNNNNNATCATCAATTTGT+GGG | - | chr3_3:88312238-88312257 | None:intergenic | 15.0% |
| !! | NNNNNNNNATCATCAATTTG+TGG | - | chr3_3:88312239-88312258 | None:intergenic | 15.0% |
| !! | GTTAATGAAAAAAATGAATT+TGG | - | chr3_3:88312530-88312549 | None:intergenic | 15.0% |
| !! | CTATTGTAATTATAGAAATA+TGG | + | chr3_3:88312731-88312750 | Msa0481920:intron | 15.0% |
| !!! | AATTATGATTTGATAATTTG+TGG | + | chr3_3:88312797-88312816 | Msa0481920:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTACCCA+TGG | + | chr3_3:88313450-88313469 | Msa0481920:intron | 15.0% |
| !! | ATTATTTACATAATTCCATA+AGG | + | chr3_3:88313583-88313602 | Msa0481920:CDS | 15.0% |
| !! | AAAAAAGTTATGAAAGAATT+AGG | - | chr3_3:88313628-88313647 | None:intergenic | 15.0% |
| !! | ATTTGAATGTTATACATAAA+AGG | + | chr3_3:88313759-88313778 | Msa0481920:intron | 15.0% |
| !!! | TTTTCAACATGATATATATT+TGG | + | chr3_3:88313891-88313910 | Msa0481920:intron | 15.0% |
| !! | TTAGCCATTATAATTTAATA+GGG | - | chr3_3:88314103-88314122 | None:intergenic | 15.0% |
| !! | TTTAGCCATTATAATTTAAT+AGG | - | chr3_3:88314104-88314123 | None:intergenic | 15.0% |
| !!! | TTTGTAAATAAAAGTTGATT+TGG | + | chr3_3:88315087-88315106 | Msa0481920:intron | 15.0% |
| !! | AAAAATATATATTCATAAGG+GGG | + | chr3_3:88316123-88316142 | Msa0481920:intron | 15.0% |
| !!! | TCTAAATTCATATTTCTATT+TGG | + | chr3_3:88316477-88316496 | Msa0481920:intron | 15.0% |
| !!! | TTTTTTGTAGTTTGTAGAAA+TGG | + | chr3_3:88308419-88308438 | Msa0481920:intron | 20.0% |
| !!! | TTTTTGTAGTTTGTAGAAAT+GGG | + | chr3_3:88308420-88308439 | Msa0481920:intron | 20.0% |
| !!! | GAAGTTTACATTTTTATTGA+AGG | + | chr3_3:88308584-88308603 | Msa0481920:intron | 20.0% |
| !!! | TTTTTATTGAAGGATTTTGT+TGG | + | chr3_3:88308594-88308613 | Msa0481920:intron | 20.0% |
| !!! | TTTTATTGAAGGATTTTGTT+GGG | + | chr3_3:88308595-88308614 | Msa0481920:intron | 20.0% |
| !! | ACATATAATAGAAATGTGAA+TGG | - | chr3_3:88309018-88309037 | None:intergenic | 20.0% |
| !! | AAACTAAAAGATTTGTGAAT+GGG | - | chr3_3:88309056-88309075 | None:intergenic | 20.0% |
| !! | AAAACTAAAAGATTTGTGAA+TGG | - | chr3_3:88309057-88309076 | None:intergenic | 20.0% |
| !!! | AAATCTTTTAGTTTTCTTTC+TGG | + | chr3_3:88309062-88309081 | Msa0481920:intron | 20.0% |
| !!! | AATCTTTTAGTTTTCTTTCT+GGG | + | chr3_3:88309063-88309082 | Msa0481920:intron | 20.0% |
| !! | TTGAATATTTATTGTGTTGA+TGG | + | chr3_3:88309162-88309181 | Msa0481920:intron | 20.0% |
| !! | ATATTAAGAAAAACTGTAGA+CGG | - | chr3_3:88309228-88309247 | None:intergenic | 20.0% |
| !!! | ATTTTAAAATAGGTCATGTT+TGG | - | chr3_3:88309563-88309582 | None:intergenic | 20.0% |
| !! | ATTGAAAGGATTACATATTA+CGG | - | chr3_3:88309626-88309645 | None:intergenic | 20.0% |
| !! | GTTATGATTACTGTATAAAT+TGG | + | chr3_3:88309968-88309987 | Msa0481920:intron | 20.0% |
| !! | TGCATTGAAAGTAAAATTTA+GGG | - | chr3_3:88310054-88310073 | None:intergenic | 20.0% |
| !! | TTGCATTGAAAGTAAAATTT+AGG | - | chr3_3:88310055-88310074 | None:intergenic | 20.0% |
| !!! | TCTTTTTACATCTTCTTTAT+TGG | + | chr3_3:88310142-88310161 | Msa0481920:intron | 20.0% |
| !! | AGATAAAATATCTAGTATGT+TGG | - | chr3_3:88310290-88310309 | None:intergenic | 20.0% |
| !!! | TATCTATAACGATTTTTTCA+AGG | - | chr3_3:88310584-88310603 | None:intergenic | 20.0% |
| !! | ATAACTTGAAATTTCACATA+TGG | + | chr3_3:88311678-88311697 | Msa0481920:intron | 20.0% |
| !! | AATTTCACATATGGTTTATA+TGG | + | chr3_3:88311687-88311706 | Msa0481920:intron | 20.0% |
| !! | TAGAAAAACATTAAACATTC+AGG | + | chr3_3:88311877-88311896 | Msa0481920:intron | 20.0% |
| !! | NNNNNNATCATCAATTTGTG+GGG | - | chr3_3:88312237-88312256 | None:intergenic | 20.0% |
| !! | TATAATTACAATAGTGACTT+TGG | - | chr3_3:88312725-88312744 | None:intergenic | 20.0% |
| !! | TCATTAAAAAAGATGCAATT+TGG | + | chr3_3:88312979-88312998 | Msa0481920:intron | 20.0% |
| !! | CATTAAAAAAGATGCAATTT+GGG | + | chr3_3:88312980-88312999 | Msa0481920:intron | 20.0% |
| !! | TCAAAATAGTATAAACCTTA+TGG | - | chr3_3:88313601-88313620 | None:intergenic | 20.0% |
| !!! | AGTGTTGATTATTATTTCTT+CGG | + | chr3_3:88313697-88313716 | Msa0481920:intron | 20.0% |
| !!! | TGTATTCTCATTTTTAATTG+AGG | - | chr3_3:88313941-88313960 | None:intergenic | 20.0% |
| !!! | ACCAAGTTTAAAATCATTAT+AGG | + | chr3_3:88314457-88314476 | Msa0481920:intron | 20.0% |
| !!! | ACCTATAATGATTTTAAACT+TGG | - | chr3_3:88314461-88314480 | None:intergenic | 20.0% |
| !! | GAAATAATTGAATATCAAAG+AGG | - | chr3_3:88314571-88314590 | None:intergenic | 20.0% |
| !! | GATATTCAATTATTTCATTG+TGG | + | chr3_3:88314575-88314594 | Msa0481920:intron | 20.0% |
| !! | AGATAAATACATTCAAAAGA+AGG | - | chr3_3:88314872-88314891 | None:intergenic | 20.0% |
| !!! | TATTTATCTTTTTCTATCTC+AGG | + | chr3_3:88314883-88314902 | Msa0481920:intron | 20.0% |
| !!! | AATTTTTCCTTGATGATTAA+AGG | + | chr3_3:88316081-88316100 | Msa0481920:intron | 20.0% |
| !!! | CTAACTTAATTTTACAAAAC+CGG | - | chr3_3:88316170-88316189 | None:intergenic | 20.0% |
| !! | TTAGATGATTTACATTCATT+GGG | - | chr3_3:88316462-88316481 | None:intergenic | 20.0% |
| !! | TTTAGATGATTTACATTCAT+TGG | - | chr3_3:88316463-88316482 | None:intergenic | 20.0% |
| !! | TAATTAGTTAAATCTTCTCA+TGG | + | chr3_3:88316827-88316846 | Msa0481920:intron | 20.0% |
| !! | AATTAGTTAAATCTTCTCAT+GGG | + | chr3_3:88316828-88316847 | Msa0481920:intron | 20.0% |
| !! | ATCTTCACAAAAAATAGAAA+AGG | - | chr3_3:88317044-88317063 | None:intergenic | 20.0% |
| !!! | CAATCATTGAAGTTTTATGA+TGG | + | chr3_3:88308371-88308390 | Msa0481920:intron | 25.0% |
| ! | TGTTATGTATGTTGAAAGTT+TGG | + | chr3_3:88308395-88308414 | Msa0481920:intron | 25.0% |
| !! | TTTGCATAGGATTTTCATAT+GGG | + | chr3_3:88308451-88308470 | Msa0481920:intron | 25.0% |
| ! | TAATTCTAATCACATTCGTT+TGG | - | chr3_3:88308495-88308514 | None:intergenic | 25.0% |
| ! | ATTATGCACAGACTAATTAA+AGG | - | chr3_3:88308920-88308939 | None:intergenic | 25.0% |
| ! | AACTAAAAGATTTGTGAATG+GGG | - | chr3_3:88309055-88309074 | None:intergenic | 25.0% |
| ! | TTTAGTAAACATGACTATTG+TGG | + | chr3_3:88309114-88309133 | Msa0481920:intron | 25.0% |
| ! | TGATATTATCATATTCTGGT+TGG | + | chr3_3:88309191-88309210 | Msa0481920:intron | 25.0% |
| !! | GGGAAAAGAATAGAATTTTA+GGG | + | chr3_3:88309421-88309440 | Msa0481920:intron | 25.0% |
| ! | TAGTGGAAAAAAGAGAATTT+AGG | + | chr3_3:88309489-88309508 | Msa0481920:intron | 25.0% |
| ! | AGTGGAAAAAAGAGAATTTA+GGG | + | chr3_3:88309490-88309509 | Msa0481920:intron | 25.0% |
| ! | TTACATATTACGGTGAATAT+AGG | - | chr3_3:88309616-88309635 | None:intergenic | 25.0% |
| ! | AGCATATCAAACATATTGAA+AGG | - | chr3_3:88309640-88309659 | None:intergenic | 25.0% |
| !!! | TATTTCACATAGTGGATTTT+CGG | + | chr3_3:88309750-88309769 | Msa0481920:intron | 25.0% |
| ! | GGATTTATTGGTAAACATTT+CGG | + | chr3_3:88309946-88309965 | Msa0481920:intron | 25.0% |
| ! | GCATTGAAAGTAAAATTTAG+GGG | - | chr3_3:88310053-88310072 | None:intergenic | 25.0% |
| ! | AACAAACTAAAAGTTAAGAC+TGG | - | chr3_3:88310105-88310124 | None:intergenic | 25.0% |
| !!! | AGTCTTAACTTTTAGTTTGT+TGG | + | chr3_3:88310104-88310123 | Msa0481920:intron | 25.0% |
| !! | GATAACAAATTCTAAAAGGT+GGG | - | chr3_3:88310252-88310271 | None:intergenic | 25.0% |
| !! | TGATAACAAATTCTAAAAGG+TGG | - | chr3_3:88310253-88310272 | None:intergenic | 25.0% |
| !! | ATCCCTTTTATGCTTTATAT+AGG | + | chr3_3:88310638-88310657 | Msa0481920:intron | 25.0% |
| ! | TGCCTATATAAAGCATAAAA+GGG | - | chr3_3:88310643-88310662 | None:intergenic | 25.0% |
| ! | ATGCCTATATAAAGCATAAA+AGG | - | chr3_3:88310644-88310663 | None:intergenic | 25.0% |
| !! | TCATAACTGAACACTTTTAT+TGG | - | chr3_3:88310683-88310702 | None:intergenic | 25.0% |
| ! | TTAAATTCACGCACAATTTA+AGG | + | chr3_3:88310955-88310974 | Msa0481920:intron | 25.0% |
| !! | TTTTTATAACCCATACAACT+AGG | - | chr3_3:88311020-88311039 | None:intergenic | 25.0% |
| !! | AGTTGTATGGGTTATAAAAA+TGG | + | chr3_3:88311020-88311039 | Msa0481920:intron | 25.0% |
| ! | AATACAGTTAAATTTCCAAG+AGG | + | chr3_3:88311302-88311321 | Msa0481920:CDS | 25.0% |
| !! | AAAATTGCAATCTAGAGTAA+AGG | - | chr3_3:88311488-88311507 | None:intergenic | 25.0% |
| ! | AACTCATAGACTATAAGAAT+TGG | - | chr3_3:88311513-88311532 | None:intergenic | 25.0% |
| !! | GTTGTCTAACCATAAAATTT+TGG | + | chr3_3:88311594-88311613 | Msa0481920:intron | 25.0% |
| !!! | AGCTGTTTTCCAAAATTTTA+TGG | - | chr3_3:88311606-88311625 | None:intergenic | 25.0% |
| !!! | TTATGTCATTTTTGGAACAT+TGG | + | chr3_3:88311650-88311669 | Msa0481920:intron | 25.0% |
| ! | AATGTATGAAATTTATAGCC+TGG | - | chr3_3:88311737-88311756 | None:intergenic | 25.0% |
| ! | ACAAAAGATACCAAAAAACA+AGG | - | chr3_3:88311797-88311816 | None:intergenic | 25.0% |
| ! | GATGCAATTTCAAATATATC+TGG | - | chr3_3:88312413-88312432 | None:intergenic | 25.0% |
| ! | TTGAGAATTCCATTATATTC+AGG | - | chr3_3:88312470-88312489 | None:intergenic | 25.0% |
| !! | GAATATAATGGAATTCTCAA+AGG | + | chr3_3:88312470-88312489 | Msa0481920:CDS | 25.0% |
| ! | AAACAATTGTCAATTAAGTG+TGG | + | chr3_3:88312617-88312636 | Msa0481920:intron | 25.0% |
| !! | ATTTTCTATCACTGTAAATG+AGG | + | chr3_3:88312658-88312677 | Msa0481920:intron | 25.0% |
| ! | TGTGGAATATTTGTAATTAC+TGG | + | chr3_3:88312815-88312834 | Msa0481920:intron | 25.0% |
| ! | AGAAAGAAGTTAAAACTCAT+CGG | - | chr3_3:88312877-88312896 | None:intergenic | 25.0% |
| !!! | ATTTTGCGATATTGCTATTA+TGG | - | chr3_3:88312953-88312972 | None:intergenic | 25.0% |
| !! | GTTTTGCAATCAATTTTAGA+GGG | - | chr3_3:88313301-88313320 | None:intergenic | 25.0% |
| !! | AGTTTTGCAATCAATTTTAG+AGG | - | chr3_3:88313302-88313321 | None:intergenic | 25.0% |
| !! | AAAAAAATCAGTTTTTCGTG+AGG | - | chr3_3:88313429-88313448 | None:intergenic | 25.0% |
| ! | TTTCAGTCAGTACAAAAAAT+TGG | + | chr3_3:88313521-88313540 | Msa0481920:CDS | 25.0% |
| ! | TTAAGATCTATCTAAGTAGT+CGG | - | chr3_3:88313857-88313876 | None:intergenic | 25.0% |
| ! | CAACATGATATATATTTGGT+AGG | + | chr3_3:88313895-88313914 | Msa0481920:intron | 25.0% |
| ! | TGGTCCCTATTAAATTATAA+TGG | + | chr3_3:88314096-88314115 | Msa0481920:intron | 25.0% |
| ! | AGAAAACAAATGTCAAGAAA+TGG | - | chr3_3:88314335-88314354 | None:intergenic | 25.0% |
| !!! | ATTTCTTGACATTTGTTTTC+TGG | + | chr3_3:88314334-88314353 | Msa0481920:intron | 25.0% |
| !! | TTTTTGCAATGATTCTTTTC+TGG | + | chr3_3:88314419-88314438 | Msa0481920:intron | 25.0% |
| !!! | ATGATTCTTTTCTGGAATTT+TGG | + | chr3_3:88314427-88314446 | Msa0481920:intron | 25.0% |
| !!! | TGATTCTTTTCTGGAATTTT+GGG | + | chr3_3:88314428-88314447 | Msa0481920:intron | 25.0% |
| ! | GAAAGAAAAATCAAAGTGAT+TGG | + | chr3_3:88314542-88314561 | Msa0481920:intron | 25.0% |
| !!! | CATTGTGGTTTTGTTTATTA+TGG | + | chr3_3:88314590-88314609 | Msa0481920:intron | 25.0% |
| !!! | AGAGAATTTTCAAGAAAAGA+AGG | - | chr3_3:88314759-88314778 | None:intergenic | 25.0% |
| !! | AACATTGTTATTGGAAAAGA+GGG | - | chr3_3:88314812-88314831 | None:intergenic | 25.0% |
| !! | TAACATTGTTATTGGAAAAG+AGG | - | chr3_3:88314813-88314832 | None:intergenic | 25.0% |
| ! | ATGTCTAGTAACATTGTTAT+TGG | - | chr3_3:88314821-88314840 | None:intergenic | 25.0% |
| ! | ATACATTCAAAAGAAGGATA+AGG | - | chr3_3:88314866-88314885 | None:intergenic | 25.0% |
| ! | GTCTTAAAATACTTCTAAGT+AGG | + | chr3_3:88315240-88315259 | Msa0481920:intron | 25.0% |
| ! | TACCACGTTAGAATTTAAAT+TGG | - | chr3_3:88315312-88315331 | None:intergenic | 25.0% |
| ! | ATCTTTAAGCATTACAACTT+TGG | + | chr3_3:88315399-88315418 | Msa0481920:intron | 25.0% |
| ! | TCTTTAAGCATTACAACTTT+GGG | + | chr3_3:88315400-88315419 | Msa0481920:intron | 25.0% |
| ! | TTGATATATGTTATGCATTG+AGG | + | chr3_3:88315430-88315449 | Msa0481920:intron | 25.0% |
| ! | TAATCAATTGAGGAGAAAAT+TGG | - | chr3_3:88315620-88315639 | None:intergenic | 25.0% |
| ! | CATCAAAATAAAATCACAGA+AGG | + | chr3_3:88315812-88315831 | Msa0481920:intron | 25.0% |
| ! | AATGGAAAGAAACTTGAATT+TGG | - | chr3_3:88316028-88316047 | None:intergenic | 25.0% |
| !!! | TATTTTGACTCGAACAAAAA+TGG | - | chr3_3:88316046-88316065 | None:intergenic | 25.0% |
| !!! | CGGTTTTGTAAAATTAAGTT+AGG | + | chr3_3:88316168-88316187 | Msa0481920:intron | 25.0% |
| ! | TTTCTATTTGGTCTAAGTAT+TGG | + | chr3_3:88316489-88316508 | Msa0481920:intron | 25.0% |
| ! | TATAACAAAAAGCCGAATAA+TGG | - | chr3_3:88316769-88316788 | None:intergenic | 25.0% |
| !! | GATATTCGTTCTTTATTTCA+GGG | - | chr3_3:88316925-88316944 | None:intergenic | 25.0% |
| !! | AGATATTCGTTCTTTATTTC+AGG | - | chr3_3:88316926-88316945 | None:intergenic | 25.0% |
| ! | GAAATTTGAAACCCTAACAA+TGG | - | chr3_3:88308140-88308159 | None:intergenic | 30.0% |
| TATGATATGGTTGCGAAATT+GGG | - | chr3_3:88308197-88308216 | None:intergenic | 30.0% | |
| TTGAACAACACAACAACAAA+GGG | - | chr3_3:88308348-88308367 | None:intergenic | 30.0% | |
| ATTGAACAACACAACAACAA+AGG | - | chr3_3:88308349-88308368 | None:intergenic | 30.0% | |
| ! | GTTTGCATAGGATTTTCATA+TGG | + | chr3_3:88308450-88308469 | Msa0481920:intron | 30.0% |
| CCAAGTTTAGTTATGGAAAA+TGG | - | chr3_3:88308725-88308744 | None:intergenic | 30.0% | |
| ! | CCATTTTCCATAACTAAACT+TGG | + | chr3_3:88308722-88308741 | Msa0481920:intron | 30.0% |
| TGTATGACCAAGTTTAGTTA+TGG | - | chr3_3:88308732-88308751 | None:intergenic | 30.0% | |
| ! | AGCAAAGTATCTTATCTAGA+AGG | - | chr3_3:88308945-88308964 | None:intergenic | 30.0% |
| TTATCAGTGTTGTCAAATAG+CGG | + | chr3_3:88309277-88309296 | Msa0481920:intron | 30.0% | |
| ATTGTCCTACTAGAAAAACT+CGG | - | chr3_3:88309355-88309374 | None:intergenic | 30.0% | |
| ! | CGGGAAAAGAATAGAATTTT+AGG | + | chr3_3:88309420-88309439 | Msa0481920:intron | 30.0% |
| AAAAAAAACACGGAGAATAG+AGG | - | chr3_3:88309666-88309685 | None:intergenic | 30.0% | |
| AAGCAATTAGTAATCTGTGT+TGG | + | chr3_3:88310006-88310025 | Msa0481920:intron | 30.0% | |
| ! | AATTAGTAATCTGTGTTGGT+CGG | + | chr3_3:88310010-88310029 | Msa0481920:intron | 30.0% |
| TAGGTATGACAATCATCAAT+CGG | + | chr3_3:88310181-88310200 | Msa0481920:intron | 30.0% | |
| ATATCTAGTATGTTGGAACT+AGG | - | chr3_3:88310283-88310302 | None:intergenic | 30.0% | |
| AGAAATTATCATTTACCTGG+TGG | - | chr3_3:88310434-88310453 | None:intergenic | 30.0% | |
| GTCAGAAATTATCATTTACC+TGG | - | chr3_3:88310437-88310456 | None:intergenic | 30.0% | |
| AGGCATAAGAAATATGAGTT+CGG | + | chr3_3:88310495-88310514 | Msa0481920:intron | 30.0% | |
| AGATGGAAAATAAAAGTGAC+GGG | - | chr3_3:88310535-88310554 | None:intergenic | 30.0% | |
| CAGATGGAAAATAAAAGTGA+CGG | - | chr3_3:88310536-88310555 | None:intergenic | 30.0% | |
| ! | ATATTACCAGAAGTACAGAT+TGG | + | chr3_3:88310705-88310724 | Msa0481920:intron | 30.0% |
| ! | TATTACCAGAAGTACAGATT+GGG | + | chr3_3:88310706-88310725 | Msa0481920:intron | 30.0% |
| ATTGATTGCTATCTTATCCA+AGG | + | chr3_3:88310780-88310799 | Msa0481920:intron | 30.0% | |
| AACATGTATGCATTAATCCT+TGG | - | chr3_3:88310800-88310819 | None:intergenic | 30.0% | |
| AGGATTAATGCATACATGTT+TGG | + | chr3_3:88310800-88310819 | Msa0481920:intron | 30.0% | |
| TTTAACACAAATGTGCACAA+TGG | - | chr3_3:88310940-88310959 | None:intergenic | 30.0% | |
| CAAAAACACAAAGATGCATA+TGG | - | chr3_3:88310990-88311009 | None:intergenic | 30.0% | |
| ! | TTGTGTTTTTCCTAGTTGTA+TGG | + | chr3_3:88311007-88311026 | Msa0481920:intron | 30.0% |
| ! | TGTGTTTTTCCTAGTTGTAT+GGG | + | chr3_3:88311008-88311027 | Msa0481920:intron | 30.0% |
| TCTACAGTTAAATTTCCAAG+AGG | + | chr3_3:88311266-88311285 | Msa0481920:CDS | 30.0% | |
| TTAAATTTCCAAGAGGACTA+CGG | + | chr3_3:88311273-88311292 | Msa0481920:CDS | 30.0% | |
| TTAAATTTCCAAGAGGACTA+CGG | + | chr3_3:88311273-88311292 | Msa0481920:CDS | 30.0% | |
| TAGACAACATAATTCTTCAC+AGG | - | chr3_3:88311582-88311601 | None:intergenic | 30.0% | |
| !!! | GTGGTCATTTATGTCATTTT+TGG | + | chr3_3:88311642-88311661 | Msa0481920:intron | 30.0% |
| TTTATATGGATTCTGACCTT+TGG | + | chr3_3:88311701-88311720 | Msa0481920:intron | 30.0% | |
| !!! | GATTTGATGTCCTTGTTTTT+TGG | + | chr3_3:88311784-88311803 | Msa0481920:intron | 30.0% |
| TATTCTACCCAAGCATATAA+GGG | - | chr3_3:88311856-88311875 | None:intergenic | 30.0% | |
| !! | ACATTCAGGAGTTTTGATAT+TGG | + | chr3_3:88311891-88311910 | Msa0481920:intron | 30.0% |
| ATTACTAATGAATCCATCCA+AGG | + | chr3_3:88312160-88312179 | Msa0481920:intron | 30.0% | |
| ! | TTGAATTCAACTTTCAGGTA+AGG | + | chr3_3:88312205-88312224 | Msa0481920:intron | 30.0% |
| AAAGTTAGCACAGAAAAGTA+GGG | - | chr3_3:88312358-88312377 | None:intergenic | 30.0% | |
| TAAAGTTAGCACAGAAAAGT+AGG | - | chr3_3:88312359-88312378 | None:intergenic | 30.0% | |
| TTATATTCAGGATCTTTCTC+TGG | - | chr3_3:88312458-88312477 | None:intergenic | 30.0% | |
| GAGAAAGATCCTGAATATAA+TGG | + | chr3_3:88312458-88312477 | Msa0481920:CDS | 30.0% | |
| TCAGCAAGAATAGAATAACA+TGG | - | chr3_3:88312695-88312714 | None:intergenic | 30.0% | |
| AATCAAAAGAGCTTCTTGAA+AGG | + | chr3_3:88313087-88313106 | Msa0481920:CDS | 30.0% | |
| !! | GGAAAGGATTTAATTTGCAT+AGG | - | chr3_3:88313159-88313178 | None:intergenic | 30.0% |
| !! | AGGTTTGTTAGTTCTTGAAA+GGG | + | chr3_3:88313240-88313259 | Msa0481920:intron | 30.0% |
| ! | TTAGTTCTTGAAAGGGATTT+CGG | + | chr3_3:88313247-88313266 | Msa0481920:intron | 30.0% |
| TTAGTCCTCATAAAACCTAA+TGG | - | chr3_3:88313999-88314018 | None:intergenic | 30.0% | |
| TAATTTCTTCCCAATACTGT+AGG | + | chr3_3:88314133-88314152 | Msa0481920:intron | 30.0% | |
| TAGTAAGTGTGAATAATTGG+TGG | - | chr3_3:88314271-88314290 | None:intergenic | 30.0% | |
| CCATAGTAAGTGTGAATAAT+TGG | - | chr3_3:88314274-88314293 | None:intergenic | 30.0% | |
| CCAATTATTCACACTTACTA+TGG | + | chr3_3:88314271-88314290 | Msa0481920:intron | 30.0% | |
| TTTGATATCATTTGCGTTGA+TGG | + | chr3_3:88314372-88314391 | Msa0481920:intron | 30.0% | |
| AGAAAAATCAAAGTGATTGG+TGG | + | chr3_3:88314545-88314564 | Msa0481920:intron | 30.0% | |
| ATAGAAAATGCAGCAAAGTT+TGG | - | chr3_3:88314616-88314635 | None:intergenic | 30.0% | |
| AAATCGTTGTTGCAAATTGT+TGG | + | chr3_3:88314715-88314734 | Msa0481920:intron | 30.0% | |
| AATCGTTGTTGCAAATTGTT+GGG | + | chr3_3:88314716-88314735 | Msa0481920:intron | 30.0% | |
| TCTTGAAAATTCTCTTTCTC+TGG | + | chr3_3:88314764-88314783 | Msa0481920:intron | 30.0% | |
| !! | GTTGATTTGGTTATGAAAGT+TGG | + | chr3_3:88315100-88315119 | Msa0481920:intron | 30.0% |
| GTCTCACATTAAATGTCATA+TGG | + | chr3_3:88315218-88315237 | Msa0481920:intron | 30.0% | |
| GTCCAATTTAAATTCTAACG+TGG | + | chr3_3:88315307-88315326 | Msa0481920:intron | 30.0% | |
| ! | AGTATAGCTTGGTTTGATAA+AGG | + | chr3_3:88315331-88315350 | Msa0481920:intron | 30.0% |
| ! | GTATAGCTTGGTTTGATAAA+GGG | + | chr3_3:88315332-88315351 | Msa0481920:intron | 30.0% |
| CGGTACAATTTAATCAATTG+AGG | - | chr3_3:88315630-88315649 | None:intergenic | 30.0% | |
| CAACGAAGCAATAAAATTGT+CGG | - | chr3_3:88315650-88315669 | None:intergenic | 30.0% | |
| !! | GATTGTATCTAGAGTTTTGT+TGG | + | chr3_3:88315706-88315725 | Msa0481920:intron | 30.0% |
| TGTGTGCTCTTTAATACATT+TGG | - | chr3_3:88315914-88315933 | None:intergenic | 30.0% | |
| TCAGAAACCTTTAATCATCA+AGG | - | chr3_3:88316091-88316110 | None:intergenic | 30.0% | |
| !!! | ACATTCCTTATTTTAGAAGC+CGG | + | chr3_3:88316148-88316167 | Msa0481920:intron | 30.0% |
| TTATGTACAACAAACTGCAA+AGG | - | chr3_3:88316884-88316903 | None:intergenic | 30.0% | |
| ! | GTTCTTTATTTCAGGGTAAT+CGG | - | chr3_3:88316918-88316937 | None:intergenic | 30.0% |
| ! | ATGATGTTTGATTCAGCTTT+TGG | - | chr3_3:88317006-88317025 | None:intergenic | 30.0% |
| TAAATATACCACACGCAATA+AGG | + | chr3_3:88317091-88317110 | Msa0481920:three_prime_UTR | 30.0% | |
| !! | TTGCAAGGTCTCTGAAATTT+CGG | + | chr3_3:88308070-88308089 | Msa0481920:five_prime_UTR | 35.0% |
| TTGAAACCCTAACAATGGTT+TGG | - | chr3_3:88308135-88308154 | None:intergenic | 35.0% | |
| AGGGTTTCAAATTTCTCACT+CGG | + | chr3_3:88308145-88308164 | Msa0481920:five_prime_UTR | 35.0% | |
| GGTCGAATTATGGATGAATT+TGG | - | chr3_3:88308176-88308195 | None:intergenic | 35.0% | |
| CTATGATATGGTTGCGAAAT+TGG | - | chr3_3:88308198-88308217 | None:intergenic | 35.0% | |
| ! | CGCAACCATATCATAGTTTT+CGG | + | chr3_3:88308202-88308221 | Msa0481920:five_prime_UTR | 35.0% |
| ATGAGCCGAAAACTATGATA+TGG | - | chr3_3:88308210-88308229 | None:intergenic | 35.0% | |
| !! | ATCGTTGATGGATTACGATA+CGG | - | chr3_3:88308241-88308260 | None:intergenic | 35.0% |
| ! | TGTAGTTTGTAGAAATGGGT+TGG | + | chr3_3:88308424-88308443 | Msa0481920:intron | 35.0% |
| TGCTAGAGAGTTTAGAAGAT+TGG | + | chr3_3:88308530-88308549 | Msa0481920:intron | 35.0% | |
| ! | GGTCATACATGTGAGTTTTT+AGG | + | chr3_3:88308743-88308762 | Msa0481920:intron | 35.0% |
| AGTGATCTAGTCTAGTTGAT+AGG | + | chr3_3:88308769-88308788 | Msa0481920:intron | 35.0% | |
| ! | ACTAATTAAAGGCCGAGTTT+TGG | - | chr3_3:88308909-88308928 | None:intergenic | 35.0% |
| ! | GGTTTGCTTAATTATGTACG+TGG | + | chr3_3:88309135-88309154 | Msa0481920:intron | 35.0% |
| ! | TCATATTCTGGTTGGAATGT+TGG | + | chr3_3:88309199-88309218 | Msa0481920:intron | 35.0% |
| TTACATCTGCTAGCAGAAAT+TGG | - | chr3_3:88309391-88309410 | None:intergenic | 35.0% | |
| ATTTCTGCTAGCAGATGTAA+CGG | + | chr3_3:88309391-88309410 | Msa0481920:intron | 35.0% | |
| TGAAATAGCAGGTAATGTTG+CGG | - | chr3_3:88309737-88309756 | None:intergenic | 35.0% | |
| !! | TTACCTGCTATTTCACATAG+TGG | + | chr3_3:88309742-88309761 | Msa0481920:intron | 35.0% |
| AATCCACTATGTGAAATAGC+AGG | - | chr3_3:88309748-88309767 | None:intergenic | 35.0% | |
| TTTAGTCTAATGAAGCTCCA+TGG | + | chr3_3:88309817-88309836 | Msa0481920:intron | 35.0% | |
| TTAGTCTAATGAAGCTCCAT+GGG | + | chr3_3:88309818-88309837 | Msa0481920:intron | 35.0% | |
| TAAATCCAGTCGACAAAACA+AGG | - | chr3_3:88309933-88309952 | None:intergenic | 35.0% | |
| !! | GTTTTGTCGACTGGATTTAT+TGG | + | chr3_3:88309934-88309953 | Msa0481920:intron | 35.0% |
| TGGAAGTCTGTTGTAGAAAT+AGG | + | chr3_3:88310162-88310181 | Msa0481920:intron | 35.0% | |
| AGGTATGACAATCATCAATC+GGG | + | chr3_3:88310182-88310201 | Msa0481920:intron | 35.0% | |
| CATTTACCTGGTGGTAATTT+GGG | - | chr3_3:88310425-88310444 | None:intergenic | 35.0% | |
| TCATTTACCTGGTGGTAATT+TGG | - | chr3_3:88310426-88310445 | None:intergenic | 35.0% | |
| GATGGAAAATAAAAGTGACG+GGG | - | chr3_3:88310534-88310553 | None:intergenic | 35.0% | |
| ATGTGTAAAACAGGATACAG+CGG | - | chr3_3:88310614-88310633 | None:intergenic | 35.0% | |
| GGGATATCTATGTGTAAAAC+AGG | - | chr3_3:88310623-88310642 | None:intergenic | 35.0% | |
| AGAACACACATCAAATTCAC+TGG | - | chr3_3:88310760-88310779 | None:intergenic | 35.0% | |
| ! | AATGTGTCAATTAAAAGCGC+GGG | - | chr3_3:88310829-88310848 | None:intergenic | 35.0% |
| GAATGTGTCAATTAAAAGCG+CGG | - | chr3_3:88310830-88310849 | None:intergenic | 35.0% | |
| AGTTGACTGGATACTATTTG+AGG | + | chr3_3:88310888-88310907 | Msa0481920:intron | 35.0% | |
| ! | TGGATACTATTTGAGGTGAA+TGG | + | chr3_3:88310895-88310914 | Msa0481920:intron | 35.0% |
| ! | GGATACTATTTGAGGTGAAT+GGG | + | chr3_3:88310896-88310915 | Msa0481920:intron | 35.0% |
| ! | GATACTATTTGAGGTGAATG+GGG | + | chr3_3:88310897-88310916 | Msa0481920:intron | 35.0% |
| AGAAAACCAAATGTGTCAGA+TGG | - | chr3_3:88311122-88311141 | None:intergenic | 35.0% | |
| TATAATATGTGCTGCAGCTT+TGG | + | chr3_3:88311409-88311428 | Msa0481920:CDS | 35.0% | |
| CAACATAATTCTTCACAGGT+CGG | - | chr3_3:88311578-88311597 | None:intergenic | 35.0% | |
| ACAGCTTCATTACTCATTAG+AGG | + | chr3_3:88311620-88311639 | Msa0481920:intron | 35.0% | |
| ! | AGAAGAGGACTTTTAAGCTT+AGG | - | chr3_3:88311827-88311846 | None:intergenic | 35.0% |
| GTATTCTACCCAAGCATATA+AGG | - | chr3_3:88311857-88311876 | None:intergenic | 35.0% | |
| TTGCATTCTGCATATATCAG+AGG | - | chr3_3:88312014-88312033 | None:intergenic | 35.0% | |
| TCAACAATTACCTGGAAGAT+GGG | - | chr3_3:88312088-88312107 | None:intergenic | 35.0% | |
| TCATTCAGTCAACAATTACC+TGG | - | chr3_3:88312096-88312115 | None:intergenic | 35.0% | |
| CTGAAAGTTGAATTCAACCA+TGG | - | chr3_3:88312202-88312221 | None:intergenic | 35.0% | |
| CATGGTTGAATTCAACTTTC+AGG | + | chr3_3:88312200-88312219 | Msa0481920:intron | 35.0% | |
| ATGAATTTGGAAGCAGAAGT+GGG | - | chr3_3:88312517-88312536 | None:intergenic | 35.0% | |
| AATGAATTTGGAAGCAGAAG+TGG | - | chr3_3:88312518-88312537 | None:intergenic | 35.0% | |
| !! | ATAGAATAACATGGTGTCAC+AGG | - | chr3_3:88312686-88312705 | None:intergenic | 35.0% |
| !!! | TTTTTTATGAAACCAACCCC+TGG | - | chr3_3:88312776-88312795 | None:intergenic | 35.0% |
| ACCATGCAAACTATTATGTC+TGG | + | chr3_3:88312841-88312860 | Msa0481920:intron | 35.0% | |
| ! | TCCAGACATAATAGTTTGCA+TGG | - | chr3_3:88312845-88312864 | None:intergenic | 35.0% |
| AGATGCAATTTGGGTAATAC+AGG | + | chr3_3:88312989-88313008 | Msa0481920:intron | 35.0% | |
| GATGCAATTTGGGTAATACA+GGG | + | chr3_3:88312990-88313009 | Msa0481920:intron | 35.0% | |
| TGTTTCAGAAGATGCTTGTA+GGG | - | chr3_3:88313063-88313082 | None:intergenic | 35.0% | |
| TTGTTTCAGAAGATGCTTGT+AGG | - | chr3_3:88313064-88313083 | None:intergenic | 35.0% | |
| ACATCTACAAGAGAGAGAAA+GGG | - | chr3_3:88313180-88313199 | None:intergenic | 35.0% | |
| AATATGATCTCCAGGAAGTA+AGG | - | chr3_3:88313219-88313238 | None:intergenic | 35.0% | |
| !! | CAGGTTTGTTAGTTCTTGAA+AGG | + | chr3_3:88313239-88313258 | Msa0481920:intron | 35.0% |
| !!! | TTTTTTACCCATGGTCAGAT+TGG | + | chr3_3:88313459-88313478 | Msa0481920:intron | 35.0% |
| ! | AATTTTCACTTGCAGCTGAT+GGG | + | chr3_3:88313727-88313746 | Msa0481920:intron | 35.0% |
| ! | AGATCTGGTTGATTCACTTA+AGG | + | chr3_3:88313807-88313826 | Msa0481920:intron | 35.0% |
| ! | TGGTTGATTCACTTAAGGAA+AGG | + | chr3_3:88313812-88313831 | Msa0481920:intron | 35.0% |
| ! | AGGTCTTTTTATCATCTGCA+TGG | - | chr3_3:88313921-88313940 | None:intergenic | 35.0% |
| TAAAACCTAATGGCTCCTTA+GGG | - | chr3_3:88313989-88314008 | None:intergenic | 35.0% | |
| ATAAAACCTAATGGCTCCTT+AGG | - | chr3_3:88313990-88314009 | None:intergenic | 35.0% | |
| CAAGCAAAAATCAATCAAGC+AGG | - | chr3_3:88314050-88314069 | None:intergenic | 35.0% | |
| ACTGTACTGTTGTAATCTGA+TGG | + | chr3_3:88314076-88314095 | Msa0481920:intron | 35.0% | |
| AGGCTGTGCAAGTAATTTAT+CGG | + | chr3_3:88314153-88314172 | Msa0481920:intron | 35.0% | |
| !! | GCAAAAAGCTCTAAAGTTGA+AGG | - | chr3_3:88314406-88314425 | None:intergenic | 35.0% |
| GTGTCTTTGCAACTTGTAAA+AGG | + | chr3_3:88314500-88314519 | Msa0481920:intron | 35.0% | |
| !! | ATTTTCAAGAAAAGAAGGCC+TGG | - | chr3_3:88314754-88314773 | None:intergenic | 35.0% |
| ATGAGAGAAAGCTAATAACG+AGG | - | chr3_3:88315030-88315049 | None:intergenic | 35.0% | |
| ATCACTCAGTACTCTATCAT+CGG | + | chr3_3:88315143-88315162 | Msa0481920:CDS | 35.0% | |
| ! | CTATACCAACCAGCTTTTTA+AGG | + | chr3_3:88315275-88315294 | Msa0481920:intron | 35.0% |
| CTAACTCATCCTTAAAAAGC+TGG | - | chr3_3:88315287-88315306 | None:intergenic | 35.0% | |
| !! | CAGCTTTTTAAGGATGAGTT+AGG | + | chr3_3:88315285-88315304 | Msa0481920:intron | 35.0% |
| TGCACTTGAAGTGAAATTCA+AGG | + | chr3_3:88315859-88315878 | Msa0481920:intron | 35.0% | |
| GCACTTGAAGTGAAATTCAA+GGG | + | chr3_3:88315860-88315879 | Msa0481920:intron | 35.0% | |
| !! | CAAAACCGGCTTCTAAAATA+AGG | - | chr3_3:88316156-88316175 | None:intergenic | 35.0% |
| ! | TGGTCTAATTGTCTAGTCTT+AGG | + | chr3_3:88316258-88316277 | Msa0481920:intron | 35.0% |
| AGCCATATCACATTCAATGT+GGG | - | chr3_3:88316308-88316327 | None:intergenic | 35.0% | |
| AAGCCATATCACATTCAATG+TGG | - | chr3_3:88316309-88316328 | None:intergenic | 35.0% | |
| ACAAAATCCGCTTGTAAAGT+GGG | - | chr3_3:88316362-88316381 | None:intergenic | 35.0% | |
| TACAAAATCCGCTTGTAAAG+TGG | - | chr3_3:88316363-88316382 | None:intergenic | 35.0% | |
| !! | CTTTACAAGCGGATTTTGTA+AGG | + | chr3_3:88316363-88316382 | Msa0481920:intron | 35.0% |
| TAGTAGTTCAACCAGATTCA+AGG | + | chr3_3:88316436-88316455 | Msa0481920:intron | 35.0% | |
| ! | CTCTTTTTGCAAAGCAGAAA+GGG | + | chr3_3:88316514-88316533 | Msa0481920:intron | 35.0% |
| ! | TCTTTTTGCAAAGCAGAAAG+GGG | + | chr3_3:88316515-88316534 | Msa0481920:intron | 35.0% |
| TATTAACCTTGAGGCTAAAG+AGG | + | chr3_3:88316539-88316558 | Msa0481920:CDS | 35.0% | |
| !! | AAAAGCCGAATAATGGATCT+CGG | - | chr3_3:88316762-88316781 | None:intergenic | 35.0% |
| TTGCTTGGCAATAAACTTGA+TGG | + | chr3_3:88316971-88316990 | Msa0481920:CDS | 35.0% | |
| CTGAATCAAACATCATGAAG+AGG | + | chr3_3:88317010-88317029 | Msa0481920:exon | 35.0% | |
| !! | TGCAAGGTCTCTGAAATTTC+GGG | + | chr3_3:88308071-88308090 | Msa0481920:five_prime_UTR | 40.0% |
| TCCTCTTCCAAACCATTGTT+AGG | + | chr3_3:88308125-88308144 | Msa0481920:five_prime_UTR | 40.0% | |
| CCTCTTCCAAACCATTGTTA+GGG | + | chr3_3:88308126-88308145 | Msa0481920:five_prime_UTR | 40.0% | |
| TGCGAAATTGGGTCGAATTA+TGG | - | chr3_3:88308186-88308205 | None:intergenic | 40.0% | |
| AAAATATGTAGCGTACCACG+CGG | - | chr3_3:88308265-88308284 | None:intergenic | 40.0% | |
| !! | AGTTTGTAGAAATGGGTTGG+TGG | + | chr3_3:88308427-88308446 | Msa0481920:intron | 40.0% |
| !! | GTTTGTAGAAATGGGTTGGT+GGG | + | chr3_3:88308428-88308447 | Msa0481920:intron | 40.0% |
| ! | GCTTTAAACGCCTACGTAAA+AGG | + | chr3_3:88308811-88308830 | Msa0481920:intron | 40.0% |
| AAACGCCTACGTAAAAGGTT+AGG | + | chr3_3:88308816-88308835 | Msa0481920:intron | 40.0% | |
| AACGCCTACGTAAAAGGTTA+GGG | + | chr3_3:88308817-88308836 | Msa0481920:intron | 40.0% | |
| CTGCTGTTGAAACCAAAACT+CGG | + | chr3_3:88308894-88308913 | Msa0481920:intron | 40.0% | |
| GCTAGCAGAAATTGGAATAG+CGG | - | chr3_3:88309383-88309402 | None:intergenic | 40.0% | |
| GACTTATTTCAACCGCTATG+CGG | + | chr3_3:88309697-88309716 | Msa0481920:intron | 40.0% | |
| AAATAGAAGAAGCCGCATAG+CGG | - | chr3_3:88309712-88309731 | None:intergenic | 40.0% | |
| CAAGTACGTGTTATCACTAG+CGG | - | chr3_3:88309797-88309816 | None:intergenic | 40.0% | |
| TAGTCTAATGAAGCTCCATG+GGG | + | chr3_3:88309819-88309838 | Msa0481920:intron | 40.0% | |
| TTACTAATTGCTTGCGCACA+GGG | - | chr3_3:88309999-88310018 | None:intergenic | 40.0% | |
| ATTACTAATTGCTTGCGCAC+AGG | - | chr3_3:88310000-88310019 | None:intergenic | 40.0% | |
| ATGACAATCATCAATCGGGT+TGG | + | chr3_3:88310186-88310205 | Msa0481920:intron | 40.0% | |
| TGACAATCATCAATCGGGTT+GGG | + | chr3_3:88310187-88310206 | Msa0481920:intron | 40.0% | |
| !! | GTATGTCACTTCAAGTTGAC+TGG | + | chr3_3:88310875-88310894 | Msa0481920:intron | 40.0% |
| AATACTGCCTTTAGCAGGTA+GGG | - | chr3_3:88311074-88311093 | None:intergenic | 40.0% | |
| ! | GTATAGCAGGACAAGGATTT+TGG | - | chr3_3:88311100-88311119 | None:intergenic | 40.0% |
| AATGTGTCAGATGGTATAGC+AGG | - | chr3_3:88311113-88311132 | None:intergenic | 40.0% | |
| GCTATACCATCTGACACATT+TGG | + | chr3_3:88311113-88311132 | Msa0481920:intron | 40.0% | |
| AGTTGTACACAGTTTCCACA+TGG | + | chr3_3:88311356-88311375 | Msa0481920:CDS | 40.0% | |
| GCTTCATTACTCATTAGAGG+TGG | + | chr3_3:88311623-88311642 | Msa0481920:intron | 40.0% | |
| GCTTAAAAGTCCTCTTCTTG+TGG | + | chr3_3:88311829-88311848 | Msa0481920:intron | 40.0% | |
| ATATAAGGGACCACAAGAAG+AGG | - | chr3_3:88311842-88311861 | None:intergenic | 40.0% | |
| TTGTGGTCCCTTATATGCTT+GGG | + | chr3_3:88311846-88311865 | Msa0481920:intron | 40.0% | |
| GTCAACAATTACCTGGAAGA+TGG | - | chr3_3:88312089-88312108 | None:intergenic | 40.0% | |
| TGAATTTGGAAGCAGAAGTG+GGG | - | chr3_3:88312516-88312535 | None:intergenic | 40.0% | |
| CAATTTGGGTAATACAGGGA+TGG | + | chr3_3:88312994-88313013 | Msa0481920:intron | 40.0% | |
| AATACAGGGATGGAAATCGT+TGG | + | chr3_3:88313004-88313023 | Msa0481920:intron | 40.0% | |
| AGTTATTGCAGCTGAATCCT+TGG | + | chr3_3:88313031-88313050 | Msa0481920:CDS | 40.0% | |
| TACAAGAGAGAGAAAGGGAA+AGG | - | chr3_3:88313175-88313194 | None:intergenic | 40.0% | |
| GACATCTACAAGAGAGAGAA+AGG | - | chr3_3:88313181-88313200 | None:intergenic | 40.0% | |
| ACTTCCTGGAGATCATATTC+AGG | + | chr3_3:88313220-88313239 | Msa0481920:CDS | 40.0% | |
| CAAACCTGAATATGATCTCC+AGG | - | chr3_3:88313227-88313246 | None:intergenic | 40.0% | |
| AGCTGAGCTTGATATAGCAA+AGG | + | chr3_3:88313560-88313579 | Msa0481920:CDS | 40.0% | |
| ! | CAATTTTCACTTGCAGCTGA+TGG | + | chr3_3:88313726-88313745 | Msa0481920:intron | 40.0% |
| ! | TCACTTGCAGCTTTTAGATC+TGG | + | chr3_3:88313792-88313811 | Msa0481920:intron | 40.0% |
| !! | AGGAGCCATTAGGTTTTATG+AGG | + | chr3_3:88313991-88314010 | Msa0481920:intron | 40.0% |
| TCCAGTGTACAGAGTTTACT+TGG | + | chr3_3:88314023-88314042 | Msa0481920:intron | 40.0% | |
| TCCAAGTAAACTCTGTACAC+TGG | - | chr3_3:88314027-88314046 | None:intergenic | 40.0% | |
| ! | GGTCATCGTGCTAAAGTTTT+TGG | + | chr3_3:88314478-88314497 | Msa0481920:intron | 40.0% |
| GTTGGGAAATAACTTTGTCC+AGG | + | chr3_3:88314733-88314752 | Msa0481920:intron | 40.0% | |
| !! | CAATATGACAAGTGCTGCTT+GGG | - | chr3_3:88314994-88315013 | None:intergenic | 40.0% |
| CTCATCCTTAAAAAGCTGGT+TGG | - | chr3_3:88315283-88315302 | None:intergenic | 40.0% | |
| TCTAACGTGGTAGTATAGCT+TGG | + | chr3_3:88315320-88315339 | Msa0481920:intron | 40.0% | |
| TGGTTTGATAAAGGGATGTG+TGG | + | chr3_3:88315340-88315359 | Msa0481920:intron | 40.0% | |
| GGTTTGATAAAGGGATGTGT+GGG | + | chr3_3:88315341-88315360 | Msa0481920:intron | 40.0% | |
| ! | ATAAAGGGATGTGTGGGTTA+AGG | + | chr3_3:88315347-88315366 | Msa0481920:intron | 40.0% |
| CTTAAAGATATCTGCAAGCG+TGG | - | chr3_3:88315388-88315407 | None:intergenic | 40.0% | |
| ! | TTAAAGAGCGCAACCATGAA+GGG | - | chr3_3:88315540-88315559 | None:intergenic | 40.0% |
| ! | ATTAAAGAGCGCAACCATGA+AGG | - | chr3_3:88315541-88315560 | None:intergenic | 40.0% |
| CGACTAATGATAGCACGTAA+TGG | - | chr3_3:88315571-88315590 | None:intergenic | 40.0% | |
| TACCATCATAGAATCTGTGC+TGG | - | chr3_3:88316195-88316214 | None:intergenic | 40.0% | |
| GTGGTCAAACTCAAAAGGAT+AGG | - | chr3_3:88316224-88316243 | None:intergenic | 40.0% | |
| AACGAGTGGTCAAACTCAAA+AGG | - | chr3_3:88316229-88316248 | None:intergenic | 40.0% | |
| GTCCCACATTGAATGTGATA+TGG | + | chr3_3:88316303-88316322 | Msa0481920:intron | 40.0% | |
| ! | GCTCTTTTTGCAAAGCAGAA+AGG | + | chr3_3:88316513-88316532 | Msa0481920:intron | 40.0% |
| GAAAGGGGATATTAACCTTG+AGG | + | chr3_3:88316530-88316549 | Msa0481920:intron | 40.0% | |
| AATTATGCAGCAATGCATCG+AGG | - | chr3_3:88316714-88316733 | None:intergenic | 40.0% | |
| TCAGACCGAGATCCATTATT+CGG | + | chr3_3:88316754-88316773 | Msa0481920:intron | 40.0% | |
| GGCAATAAACTTGATGGAGA+AGG | + | chr3_3:88316977-88316996 | Msa0481920:CDS | 40.0% | |
| ! | AATAAGGAGCACAATTGCCT+CGG | + | chr3_3:88317107-88317126 | Msa0481920:three_prime_UTR | 40.0% |
| !! | GCAAGGTCTCTGAAATTTCG+GGG | + | chr3_3:88308072-88308091 | Msa0481920:five_prime_UTR | 45.0% |
| GGATAGCTTCAGAAGCAGTT+TGG | - | chr3_3:88308098-88308117 | None:intergenic | 45.0% | |
| GGTTTGGAAGAGGAAGATGA+TGG | - | chr3_3:88308119-88308138 | None:intergenic | 45.0% | |
| ! | CCCTAACAATGGTTTGGAAG+AGG | - | chr3_3:88308129-88308148 | None:intergenic | 45.0% |
| ! | CATGCCCTAACCTTTTACGT+AGG | - | chr3_3:88308824-88308843 | None:intergenic | 45.0% |
| TGCCAAAAACAACACCTTGC+CGG | + | chr3_3:88308853-88308872 | Msa0481920:intron | 45.0% | |
| AAATACCAATAGAGCCGGCA+AGG | - | chr3_3:88308870-88308889 | None:intergenic | 45.0% | |
| GCCAGAAATACCAATAGAGC+CGG | - | chr3_3:88308875-88308894 | None:intergenic | 45.0% | |
| ! | CAGCGTTGTGGTTTTCATAG+TGG | - | chr3_3:88309331-88309350 | None:intergenic | 45.0% |
| !! | GCTGTCCGAGTTTTTCTAGT+AGG | + | chr3_3:88309347-88309366 | Msa0481920:intron | 45.0% |
| AGCAGATGTAACGGCAATAG+CGG | + | chr3_3:88309400-88309419 | Msa0481920:intron | 45.0% | |
| GCTAGCATACGAAACTCTTC+AGG | - | chr3_3:88309464-88309483 | None:intergenic | 45.0% | |
| TCGTATGCTAGCAGCAATAG+TGG | + | chr3_3:88309472-88309491 | Msa0481920:intron | 45.0% | |
| AGTCTAATGAAGCTCCATGG+GGG | + | chr3_3:88309820-88309839 | Msa0481920:intron | 45.0% | |
| ATTCTCCAATACTTCCCCCA+TGG | - | chr3_3:88309837-88309856 | None:intergenic | 45.0% | |
| !!! | TGTCTCCTTGTTTTGTCGAC+TGG | + | chr3_3:88309925-88309944 | Msa0481920:intron | 45.0% |
| TACTAATTGCTTGCGCACAG+GGG | - | chr3_3:88309998-88310017 | None:intergenic | 45.0% | |
| ! | TAGTAATCTGTGTTGGTCGG+TGG | + | chr3_3:88310013-88310032 | Msa0481920:intron | 45.0% |
| ! | GACAATCATCAATCGGGTTG+GGG | + | chr3_3:88310188-88310207 | Msa0481920:intron | 45.0% |
| !! | ACAATCATCAATCGGGTTGG+GGG | + | chr3_3:88310189-88310208 | Msa0481920:intron | 45.0% |
| ACTGCACTAGTAGCCAACAT+TGG | - | chr3_3:88310392-88310411 | None:intergenic | 45.0% | |
| TCTTTGCCCAAATTACCACC+AGG | + | chr3_3:88310416-88310435 | Msa0481920:CDS | 45.0% | |
| GATTGCCCAATCTGTACTTC+TGG | - | chr3_3:88310714-88310733 | None:intergenic | 45.0% | |
| CATCAAATTCACTGGCAGGA+AGG | - | chr3_3:88310752-88310771 | None:intergenic | 45.0% | |
| CACACATCAAATTCACTGGC+AGG | - | chr3_3:88310756-88310775 | None:intergenic | 45.0% | |
| ! | ATTTGAGGTGAATGGGGTGA+AGG | + | chr3_3:88310903-88310922 | Msa0481920:intron | 45.0% |
| GTAGGGATGGAATGGAATCA+AGG | - | chr3_3:88311057-88311076 | None:intergenic | 45.0% | |
| TTTAGCAGGTAGGGATGGAA+TGG | - | chr3_3:88311065-88311084 | None:intergenic | 45.0% | |
| ATTCCATCCCTACCTGCTAA+AGG | + | chr3_3:88311064-88311083 | Msa0481920:intron | 45.0% | |
| CAATACTGCCTTTAGCAGGT+AGG | - | chr3_3:88311075-88311094 | None:intergenic | 45.0% | |
| GGATCAATACTGCCTTTAGC+AGG | - | chr3_3:88311079-88311098 | None:intergenic | 45.0% | |
| TCAGATGGTATAGCAGGACA+AGG | - | chr3_3:88311107-88311126 | None:intergenic | 45.0% | |
| TTTGTGTGCACAGTGAGAAG+AGG | + | chr3_3:88311215-88311234 | Msa0481920:intron | 45.0% | |
| TTAACAGTCCGTAGTCCTCT+TGG | - | chr3_3:88311284-88311303 | None:intergenic | 45.0% | |
| TTAACAGTCCGTAGTCCTCT+TGG | - | chr3_3:88311284-88311303 | None:intergenic | 45.0% | |
| ACACAGTTTCCACATGGTAG+AGG | + | chr3_3:88311362-88311381 | Msa0481920:CDS | 45.0% | |
| TAGAGGAACTCGTTCTACTC+AGG | + | chr3_3:88311379-88311398 | Msa0481920:CDS | 45.0% | |
| CTTGTGGTCCCTTATATGCT+TGG | + | chr3_3:88311845-88311864 | Msa0481920:intron | 45.0% | |
| CCTGGAAGATGGGTAATTGT+TGG | - | chr3_3:88312078-88312097 | None:intergenic | 45.0% | |
| CCAACAATTACCCATCTTCC+AGG | + | chr3_3:88312075-88312094 | Msa0481920:intron | 45.0% | |
| TCCATCCAAGGATGCTCTAA+TGG | + | chr3_3:88312172-88312191 | Msa0481920:intron | 45.0% | |
| AGAAGATGCTTGTAGGGTCA+GGG | - | chr3_3:88313057-88313076 | None:intergenic | 45.0% | |
| TCTCTCTTGTAGATGTCTCG+AGG | + | chr3_3:88313184-88313203 | Msa0481920:intron | 45.0% | |
| CTTGTAGATGTCTCGAGGTT+CGG | + | chr3_3:88313189-88313208 | Msa0481920:intron | 45.0% | |
| GTTTGCACCAATCTGACCAT+GGG | - | chr3_3:88313469-88313488 | None:intergenic | 45.0% | |
| CCACTCTTGCAAGATGAAGT+AGG | - | chr3_3:88313491-88313510 | None:intergenic | 45.0% | |
| CCTACTTCATCTTGCAAGAG+TGG | + | chr3_3:88313488-88313507 | Msa0481920:CDS | 45.0% | |
| ! | CCTTAGGGTTTCAGAGTGTT+AGG | - | chr3_3:88313974-88313993 | None:intergenic | 45.0% |
| !! | CCTAACACTCTGAAACCCTA+AGG | + | chr3_3:88313971-88313990 | Msa0481920:intron | 45.0% |
| TGAAACCCTAAGGAGCCATT+AGG | + | chr3_3:88313981-88314000 | Msa0481920:intron | 45.0% | |
| CTTGCACAGCCTACAGTATT+GGG | - | chr3_3:88314145-88314164 | None:intergenic | 45.0% | |
| ACTTGCACAGCCTACAGTAT+TGG | - | chr3_3:88314146-88314165 | None:intergenic | 45.0% | |
| TCGAAGAAAACTAGTGTGCG+TGG | + | chr3_3:88314951-88314970 | Msa0481920:CDS | 45.0% | |
| TGTGCGTGGACATACTAGTA+AGG | + | chr3_3:88314965-88314984 | Msa0481920:CDS | 45.0% | |
| ! | CCAATATGACAAGTGCTGCT+TGG | - | chr3_3:88314995-88315014 | None:intergenic | 45.0% |
| CCAAGCAGCACTTGTCATAT+TGG | + | chr3_3:88314992-88315011 | Msa0481920:CDS | 45.0% | |
| ACTCAGTACTCTATCATCGG+TGG | + | chr3_3:88315146-88315165 | Msa0481920:CDS | 45.0% | |
| TACTCTATCATCGGTGGAGT+TGG | + | chr3_3:88315152-88315171 | Msa0481920:CDS | 45.0% | |
| GTTGGCTAAGGAAGAATTGC+AGG | + | chr3_3:88315170-88315189 | Msa0481920:CDS | 45.0% | |
| GGAAGAATTGCAGGAGATTC+AGG | + | chr3_3:88315179-88315198 | Msa0481920:CDS | 45.0% | |
| AAGATATCTGCAAGCGTGGT+GGG | - | chr3_3:88315384-88315403 | None:intergenic | 45.0% | |
| AAAGATATCTGCAAGCGTGG+TGG | - | chr3_3:88315385-88315404 | None:intergenic | 45.0% | |
| !!! | GAGGTTTTGGAGAGGAATCT+GGG | - | chr3_3:88315481-88315500 | None:intergenic | 45.0% |
| !!! | AGAGGTTTTGGAGAGGAATC+TGG | - | chr3_3:88315482-88315501 | None:intergenic | 45.0% |
| ! | CAAAGCACGTGAAGAGGTTT+TGG | - | chr3_3:88315494-88315513 | None:intergenic | 45.0% |
| CAAAACCTCTTCACGTGCTT+TGG | + | chr3_3:88315492-88315511 | Msa0481920:intron | 45.0% | |
| !! | TTAGCTTTGCTCTCCCTTCA+TGG | + | chr3_3:88315524-88315543 | Msa0481920:intron | 45.0% |
| CAAAACCACTTCACACGCTT+TGG | - | chr3_3:88315968-88315987 | None:intergenic | 45.0% | |
| ! | CAAAGCGTGTGAAGTGGTTT+TGG | + | chr3_3:88315966-88315985 | Msa0481920:intron | 45.0% |
| GTCCAGCACAGATTCTATGA+TGG | + | chr3_3:88316190-88316209 | Msa0481920:intron | 45.0% | |
| GAGTTTGACCACTCGTTATC+AGG | + | chr3_3:88316232-88316251 | Msa0481920:intron | 45.0% | |
| TGCATCTCCCACTTTACAAG+CGG | + | chr3_3:88316352-88316371 | Msa0481920:intron | 45.0% | |
| TGGTTGAACTACTACAACGC+AGG | - | chr3_3:88316430-88316449 | None:intergenic | 45.0% | |
| CATTCATTGGGCCTTGAATC+TGG | - | chr3_3:88316450-88316469 | None:intergenic | 45.0% | |
| TGTAAGCAGCGATGCATTGA+AGG | - | chr3_3:88316569-88316588 | None:intergenic | 45.0% | |
| ATGCATCGCTGCTTACAATG+AGG | + | chr3_3:88316572-88316591 | Msa0481920:CDS | 45.0% | |
| ATTGTGCTCCTTATTGCGTG+TGG | - | chr3_3:88317102-88317121 | None:intergenic | 45.0% | |
| !! | ATATAAAAATTCAATATTTA+TGG | + | chr3_3:88308306-88308325 | Msa0481920:intron | 5.0% |
| !! | ATTATATATTAAAAAAAACA+CGG | - | chr3_3:88309676-88309695 | None:intergenic | 5.0% |
| !! | TTAAAAAATATATATTCATA+AGG | + | chr3_3:88316120-88316139 | Msa0481920:intron | 5.0% |
| !! | TAAAAAATATATATTCATAA+GGG | + | chr3_3:88316121-88316140 | Msa0481920:intron | 5.0% |
| AATCCATCAACGATTCCGCG+TGG | + | chr3_3:88308247-88308266 | Msa0481920:five_prime_UTR | 50.0% | |
| !! | ATGGGTTGGTGGGTTTGCAT+AGG | + | chr3_3:88308438-88308457 | Msa0481920:intron | 50.0% |
| !!! | AGCCGGCAAGGTGTTGTTTT+TGG | - | chr3_3:88308858-88308877 | None:intergenic | 50.0% |
| ! | GCCGGCTCTATTGGTATTTC+TGG | + | chr3_3:88308871-88308890 | Msa0481920:intron | 50.0% |
| GAAAAACTCGGACAGCGTTG+TGG | - | chr3_3:88309343-88309362 | None:intergenic | 50.0% | |
| GCAGATGTAACGGCAATAGC+GGG | + | chr3_3:88309401-88309420 | Msa0481920:intron | 50.0% | |
| !! | CACTAGCGGACTGCGTAAAA+CGG | - | chr3_3:88309783-88309802 | None:intergenic | 50.0% |
| ! | AAGCTCCATGGGGGAAGTAT+TGG | + | chr3_3:88309829-88309848 | Msa0481920:intron | 50.0% |
| TTGGTGTGCAGGAGGAAAAC+TGG | - | chr3_3:88310373-88310392 | None:intergenic | 50.0% | |
| TTCCTCCTGCACACCAATGT+TGG | + | chr3_3:88310376-88310395 | Msa0481920:exon | 50.0% | |
| AGTAGCCAACATTGGTGTGC+AGG | - | chr3_3:88310384-88310403 | None:intergenic | 50.0% | |
| TGCACGTATCTCGTAGCAGA+TGG | - | chr3_3:88310552-88310571 | None:intergenic | 50.0% | |
| CACCATTCTCTTCCACACAG+TGG | - | chr3_3:88311244-88311263 | None:intergenic | 50.0% | |
| GAACGAGTTCCTCTACCATG+TGG | - | chr3_3:88311374-88311393 | None:intergenic | 50.0% | |
| ACCTTTGGCATACTGCTTCC+AGG | + | chr3_3:88311716-88311735 | Msa0481920:intron | 50.0% | |
| ! | GCCATTAGAGCATCCTTGGA+TGG | - | chr3_3:88312176-88312195 | None:intergenic | 50.0% |
| ! | GCAAGCCATTAGAGCATCCT+TGG | - | chr3_3:88312180-88312199 | None:intergenic | 50.0% |
| ! | GATGCTCTAATGGCTTGCCA+TGG | + | chr3_3:88312182-88312201 | Msa0481920:intron | 50.0% |
| !! | TCGTCTTGATGACGCTGAGA+TGG | + | chr3_3:88312431-88312450 | Msa0481920:CDS | 50.0% |
| CAGAAGATGCTTGTAGGGTC+AGG | - | chr3_3:88313058-88313077 | None:intergenic | 50.0% | |
| GGTTTGCACCAATCTGACCA+TGG | - | chr3_3:88313470-88313489 | None:intergenic | 50.0% | |
| ATCATCGGTGGAGTTGGCTA+AGG | + | chr3_3:88315158-88315177 | Msa0481920:CDS | 50.0% | |
| !! | GGAAGTGCTGAAGGTAGAGA+TGG | - | chr3_3:88315460-88315479 | None:intergenic | 50.0% |
| !! | AGGAATCTGGGAAGTGCTGA+AGG | - | chr3_3:88315469-88315488 | None:intergenic | 50.0% |
| !!! | CACGTGAAGAGGTTTTGGAG+AGG | - | chr3_3:88315489-88315508 | None:intergenic | 50.0% |
| CACTTCCAAAGCGTGTGAAG+TGG | + | chr3_3:88315960-88315979 | Msa0481920:intron | 50.0% | |
| !! | GAGTAGACTAGAAGTGCCGA+AGG | + | chr3_3:88315990-88316009 | Msa0481920:intron | 50.0% |
| !! | TAGACTAGAAGTGCCGAAGG+TGG | + | chr3_3:88315993-88316012 | Msa0481920:intron | 50.0% |
| TTGGAATGCCACTCCACCTT+CGG | - | chr3_3:88316009-88316028 | None:intergenic | 50.0% | |
| GACCACTCGTTATCAGGTCA+TGG | + | chr3_3:88316238-88316257 | Msa0481920:intron | 50.0% | |
| ! | GACCATGACCTGATAACGAG+TGG | - | chr3_3:88316243-88316262 | None:intergenic | 50.0% |
| ! | AAGCGTGCTCAAAGCTTGCT+TGG | + | chr3_3:88316956-88316975 | Msa0481920:CDS | 50.0% |
| GTACCACGCGGAATCGTTGA+TGG | - | chr3_3:88308253-88308272 | None:intergenic | 55.0% | |
| !! | CAACACCTTGCCGGCTCTAT+TGG | + | chr3_3:88308862-88308881 | Msa0481920:intron | 55.0% |
| !! | TAGCGGACTGCGTAAAACGG+TGG | - | chr3_3:88309780-88309799 | None:intergenic | 55.0% |
| AGCCAACATTGGTGTGCAGG+AGG | - | chr3_3:88310381-88310400 | None:intergenic | 55.0% | |
| CTGCCTTTAGCAGGTAGGGA+TGG | - | chr3_3:88311070-88311089 | None:intergenic | 55.0% | |
| GTGTGCACAGTGAGAAGAGG+TGG | + | chr3_3:88311218-88311237 | Msa0481920:intron | 55.0% | |
| GGCCACTGTGTGGAAGAGAA+TGG | + | chr3_3:88311239-88311258 | Msa0481920:CDS | 55.0% | |
| GCCTGGAAGCAGTATGCCAA+AGG | - | chr3_3:88311720-88311739 | None:intergenic | 55.0% | |
| GTTCGGAGAGCCTTACTTCC+TGG | + | chr3_3:88313206-88313225 | Msa0481920:CDS | 55.0% | |
| ACCTCTTCACGTGCTTTGGC+AGG | + | chr3_3:88315496-88315515 | Msa0481920:intron | 55.0% | |
| CCTCTTCACGTGCTTTGGCA+GGG | + | chr3_3:88315497-88315516 | Msa0481920:intron | 55.0% | |
| !! | TAGAAGTGCCGAAGGTGGAG+TGG | + | chr3_3:88315998-88316017 | Msa0481920:intron | 55.0% |
| ! | GGAGTGCCTCTTTAGCCTCA+AGG | - | chr3_3:88316548-88316567 | None:intergenic | 55.0% |
| AGCACAATTGCCTCGGCTCT+TGG | + | chr3_3:88317114-88317133 | Msa0481920:three_prime_UTR | 55.0% | |
| CTTTCTGACACCAAGAGCCG+AGG | - | chr3_3:88317127-88317146 | None:intergenic | 55.0% | |
| GAGAAGAGGTGGCCACTGTG+TGG | + | chr3_3:88311229-88311248 | Msa0481920:CDS | 60.0% | |
| TGCTTGTAGGGTCAGGGCCA+AGG | - | chr3_3:88313051-88313070 | None:intergenic | 60.0% | |
| CCCTGCCAAAGCACGTGAAG+AGG | - | chr3_3:88315500-88315519 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 88308066 | 88317159 | 88308066 | ID=Msa0481920;Name=Msa0481920 |
| chr3_3 | mRNA | 88308066 | 88317159 | 88308066 | ID=Msa0481920-mRNA-1;Parent=Msa0481920;Name=Msa0481920-mRNA-1;_AED=0.15;_eAED=0.15;_QI=221|0.9|0.90|1|0.9|0.81|11|132|323 |
| chr3_3 | exon | 88308066 | 88308268 | 88308066 | ID=Msa0481920-mRNA-1:exon:25725;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88310374 | 88310437 | 88310374 | ID=Msa0481920-mRNA-1:exon:25726;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88311228 | 88311430 | 88311228 | ID=Msa0481920-mRNA-1:exon:25727;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88312414 | 88312491 | 88312414 | ID=Msa0481920-mRNA-1:exon:25728;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88313011 | 88313108 | 88313011 | ID=Msa0481920-mRNA-1:exon:25729;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88313196 | 88313241 | 88313196 | ID=Msa0481920-mRNA-1:exon:25730;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88313477 | 88313604 | 88313477 | ID=Msa0481920-mRNA-1:exon:25731;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88314905 | 88315013 | 88314905 | ID=Msa0481920-mRNA-1:exon:25732;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88315138 | 88315200 | 88315138 | ID=Msa0481920-mRNA-1:exon:25733;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88316531 | 88316593 | 88316531 | ID=Msa0481920-mRNA-1:exon:25734;Parent=Msa0481920-mRNA-1 |
| chr3_3 | exon | 88316890 | 88317159 | 88316890 | ID=Msa0481920-mRNA-1:exon:25735;Parent=Msa0481920-mRNA-1 |
| chr3_3 | five_prime_UTR | 88308066 | 88308268 | 88308066 | ID=Msa0481920-mRNA-1:five_prime_utr;Parent=Msa0481920-mRNA-1 |
| chr3_3 | five_prime_UTR | 88310374 | 88310391 | 88310374 | ID=Msa0481920-mRNA-1:five_prime_utr;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88310392 | 88310437 | 88310392 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88311228 | 88311430 | 88311228 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88312414 | 88312491 | 88312414 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88313011 | 88313108 | 88313011 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88313196 | 88313241 | 88313196 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88313477 | 88313604 | 88313477 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88314905 | 88315013 | 88314905 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88315138 | 88315200 | 88315138 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88316531 | 88316593 | 88316531 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | CDS | 88316890 | 88317027 | 88316890 | ID=Msa0481920-mRNA-1:cds;Parent=Msa0481920-mRNA-1 |
| chr3_3 | three_prime_UTR | 88317028 | 88317159 | 88317028 | ID=Msa0481920-mRNA-1:three_prime_utr;Parent=Msa0481920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
