AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444450 MtrunA17_Chr2g0286181 88.835 618 28 8 1 578 1 617 0.0 1069
Msa1444450 MtrunA17_Chr1g0155741 34.366 355 167 8 159 451 69 419 5.03e-48 174
Msa1444450 MtrunA17_Chr1g0186011 36.630 273 122 7 242 468 221 488 5.73e-36 141
Msa1444450 MtrunA17_Chr8g0358201 35.000 140 60 5 312 422 53 190 2.49e-13 72.0
Msa1444450 MtrunA17_Chr3g0129261 39.560 91 54 1 309 399 65 154 1.65e-12 69.3
Msa1444450 MtrunA17_Chr2g0292511 30.986 142 77 3 311 432 27 167 7.03e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444450 AT5G18570.1 54.319 683 197 14 9 578 1 681 0.0 596
Msa1444450 AT1G07615.1 35.897 273 129 7 262 493 225 492 1.74e-35 140
Msa1444450 AT1G56050.1 35.385 130 53 5 312 412 57 184 1.21e-12 70.5
Msa1444450 AT4G39520.1 34.426 122 77 2 311 432 68 186 2.45e-12 69.3
Msa1444450 AT1G17470.1 33.333 114 70 2 311 419 65 177 1.85e-11 66.6
Msa1444450 AT1G17470.2 33.333 114 70 2 311 419 65 177 1.85e-11 66.6
Msa1444450 AT1G72660.2 33.333 114 70 2 311 419 65 177 2.74e-11 66.2
Msa1444450 AT1G72660.3 33.333 114 70 2 311 419 65 177 2.74e-11 66.2
Msa1444450 AT1G72660.1 33.333 114 70 2 311 419 65 177 2.74e-11 66.2
Msa1444450 AT1G30580.1 32.394 142 75 4 311 432 27 167 2.75e-11 66.2

Find 209 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTACATACATTATTTAT+TGG 0.128384 tig0030729:-3958 Msa1444450:three_prime_UTR
GGAAGTAATGCCACTCTAAT+TGG 0.191369 tig0030729:-4519 Msa1444450:exon
CACAAGCCTCAAGGACATTT+TGG 0.211110 tig0030729:+5032 None:intergenic
TGATGAAGAATTGGGGTTTA+TGG 0.218508 tig0030729:-8600 Msa1444450:CDS
TTGTTATAAGCAACTATAAA+TGG 0.224726 tig0030729:+6042 None:intergenic
TGGTAGGGAGGAGGTGATTT+TGG 0.235029 tig0030729:-8198 Msa1444450:CDS
TTGAAGAAGGTGAAGAATTC+TGG 0.257218 tig0030729:-8568 Msa1444450:CDS
TATAGTTGCTTATAACAAAA+TGG 0.257241 tig0030729:-6037 Msa1444450:CDS
GGAACGGAAGTATGGCTTTC+AGG 0.258545 tig0030729:-8445 Msa1444450:CDS
TACAACTTTGCTTCCCAATC+TGG 0.258739 tig0030729:-6979 Msa1444450:CDS
TTCCAGAAGCATACGAAAAC+TGG 0.259566 tig0030729:-6011 Msa1444450:CDS
TGTCCACAGATTCAATTAAA+TGG 0.293170 tig0030729:-4549 Msa1444450:CDS
GAAGGAGCACACCGAGGTTT+TGG 0.293578 tig0030729:-6897 Msa1444450:CDS
GAAATTTCCACCTCCATTCA+TGG 0.297081 tig0030729:-5113 Msa1444450:CDS
ATGTACTGCAACTACGAAAT+AGG 0.304579 tig0030729:-4480 Msa1444450:intron
GAGTGGCATTACTTCCATTC+AGG 0.312704 tig0030729:+4526 None:intergenic
TTTAGGATTTGGAGGAGGTT+TGG 0.321312 tig0030729:+8871 None:intergenic
TGAATTCGTTGTTACCGTTT+AGG 0.321891 tig0030729:-8337 Msa1444450:CDS
TGAATGGAGGTGGAAATTTC+AGG 0.332899 tig0030729:+5116 None:intergenic
AGTGTACTCTTCCCTGCATT+TGG 0.333641 tig0030729:+7050 None:intergenic
GGTCCATCCGGTGGGGATGG+AGG 0.337189 tig0030729:-8398 Msa1444450:CDS
GTCTGAAGATGATGAAGAAT+TGG 0.341137 tig0030729:-8609 Msa1444450:CDS
TGCCACCAGGGACGGTGATT+AGG 0.343834 tig0030729:-8226 Msa1444450:CDS
TTGACAGCGCTCATACAAAA+AGG 0.344719 tig0030729:+5949 None:intergenic
ATGGTAGTGGCAGACCTTCC+AGG 0.354141 tig0030729:-6927 Msa1444450:CDS
CTTTGACTACGATTCAACTA+TGG 0.367402 tig0030729:-6946 Msa1444450:CDS
GCCACCAGGGACGGTGATTA+GGG 0.368808 tig0030729:-8225 Msa1444450:CDS
TATGCGCTGCTTATGAGCTT+TGG 0.374290 tig0030729:-5903 Msa1444450:CDS
AGAGGAGGAAGGTGAGAAAG+TGG 0.379500 tig0030729:+8754 None:intergenic
AATGGCTTCTCAGCAAGTTC+AGG 0.382943 tig0030729:+6060 None:intergenic
CGTTGTTACCGTTTAGGAAT+GGG 0.384513 tig0030729:-8331 Msa1444450:CDS
TCCGGTGGGGATGGAGGGAG+AGG 0.384757 tig0030729:-8392 Msa1444450:CDS
ATTTGGAGGAGGTTTGGATT+TGG 0.384864 tig0030729:+8877 None:intergenic
GTTGCAGATGTTGGTATAGT+TGG 0.385284 tig0030729:-7077 Msa1444450:CDS
CCTACACTCGTCTCCCTCTC+AGG 0.390295 tig0030729:-8790 Msa1444450:CDS
GACTTGTGGGTGTTGAGTTT+AGG 0.390754 tig0030729:+8854 None:intergenic
TTTCGTAGTTGCAGTACATA+TGG 0.391667 tig0030729:+4484 None:intergenic
CATCATCGTTATCGAGTTTG+TGG 0.399071 tig0030729:+8690 None:intergenic
GCGGAGAGGAGTGGCGGTTC+CGG 0.400789 tig0030729:+8827 None:intergenic
TGTATCAGATGGAGATGATA+TGG 0.401049 tig0030729:-4612 Msa1444450:intron
GCGAAAATCTTCGCGAAAGC+CGG 0.416186 tig0030729:-8476 Msa1444450:CDS
TACATTATTTATTGGCTTGA+AGG 0.416941 tig0030729:-3950 Msa1444450:three_prime_UTR
CGGTTCCGGTGAGGACTTGT+GGG 0.419070 tig0030729:+8841 None:intergenic
ATTCAATTAAATGGCCTGAA+TGG 0.419308 tig0030729:-4540 Msa1444450:CDS
CATGACTCCTCAAACAAATC+TGG 0.420155 tig0030729:-4589 Msa1444450:CDS
TTTGTATGAGCGCTGTCAAA+AGG 0.420667 tig0030729:-5945 Msa1444450:CDS
AGACGGAGGGAACGGAAGTA+TGG 0.420800 tig0030729:-8453 Msa1444450:CDS
TTGTGGAGCAATTGGTGAAT+TGG 0.422988 tig0030729:+8707 None:intergenic
TATCGAGTTTGTGGAGCAAT+TGG 0.426319 tig0030729:+8699 None:intergenic
GACCTTCCAGGTCTTCTTGA+AGG 0.429947 tig0030729:-6915 Msa1444450:CDS
CGAAAACTGGGAATCCTTCA+AGG 0.430197 tig0030729:-5998 Msa1444450:CDS
GGTGGGGATGGAGGGAGAGG+TGG 0.432284 tig0030729:-8389 Msa1444450:CDS
TCTGAAGATGATGAAGAATT+GGG 0.434922 tig0030729:-8608 Msa1444450:CDS
TTGGAACAAGATATAGAAAT+GGG 0.435555 tig0030729:+8935 None:intergenic
AAGGGATAATTTGCCACCTC+TGG 0.436401 tig0030729:+7002 None:intergenic
TTTCAGATACATGTCGTTGA+TGG 0.441011 tig0030729:-6144 Msa1444450:intron
GAGAAATACGTACCGTTTGG+AGG 0.441360 tig0030729:-8419 Msa1444450:CDS
GTCCATCCGGTGGGGATGGA+GGG 0.450001 tig0030729:-8397 Msa1444450:CDS
GTGTTGAGTTTAGGATTTGG+AGG 0.451774 tig0030729:+8863 None:intergenic
GTTGGAACAAGATATAGAAA+TGG 0.454024 tig0030729:+8934 None:intergenic
TAGGGAGGCTGGTAGGGAGG+AGG 0.455313 tig0030729:-8207 Msa1444450:CDS
AGAATTGGGGTTTATGGATG+AGG 0.456087 tig0030729:-8594 Msa1444450:CDS
AGTGAAGGAGAAAGGATTGC+CGG 0.456941 tig0030729:-8522 Msa1444450:CDS
AAAGGAAACAACGCCCAGAT+TGG 0.457445 tig0030729:+6965 None:intergenic
ACATTATTTATTGGCTTGAA+GGG 0.458517 tig0030729:-3949 Msa1444450:three_prime_UTR
CAGAAGGCGTTGTTGTTGCC+AGG 0.459645 tig0030729:-8158 Msa1444450:CDS
TGGGTGTTGAGTTTAGGATT+TGG 0.459752 tig0030729:+8860 None:intergenic
TCACCATTCTCAGCAATCTT+CGG 0.460210 tig0030729:+8083 None:intergenic
CGGGAGAAATACGTACCGTT+TGG 0.460923 tig0030729:-8422 Msa1444450:CDS
GAAGTAATGCCACTCTAATT+GGG 0.465787 tig0030729:-4518 Msa1444450:exon
CACTGAAAGGTGTTCTGCAC+TGG 0.465901 tig0030729:-6850 Msa1444450:intron
AAGGAAAAGTTGCAATCTCA+TGG 0.466487 tig0030729:-5979 Msa1444450:CDS
AAGGAAACAACGCCCAGATT+GGG 0.467360 tig0030729:+6966 None:intergenic
GAAGAAGAAGTGAAGGAGAA+AGG 0.468046 tig0030729:-8530 Msa1444450:CDS
TGATGCACCAGATTTGTTTG+AGG 0.468296 tig0030729:+4582 None:intergenic
ATAGTTGGTGCTCCAAATGC+AGG 0.468647 tig0030729:-7062 Msa1444450:CDS
AGGTTTGGATTTGGTGCGGG+TGG 0.469088 tig0030729:+8886 None:intergenic
TTGGGAAGCAAAGTTGTAAA+GGG 0.469159 tig0030729:+6984 None:intergenic
AGTGTAGGTGGTGGCGTCGC+CGG 0.469582 tig0030729:+8805 None:intergenic
ACAACTTTGCTTCCCAATCT+GGG 0.469782 tig0030729:-6978 Msa1444450:CDS
CGGTGATTAGGGAGGCTGGT+AGG 0.470355 tig0030729:-8214 Msa1444450:CDS
ATGGATGAGGAGATTGAAGA+AGG 0.471799 tig0030729:-8581 Msa1444450:CDS
TTGGTGAATTGGTGTTGATT+CGG 0.476681 tig0030729:+8718 None:intergenic
GGTGATTAGGGAGGCTGGTA+GGG 0.477415 tig0030729:-8213 Msa1444450:CDS
AACTGAAGAAGAAGAAGTGA+AGG 0.481173 tig0030729:-8537 Msa1444450:CDS
GGAGGTCCATCCGGTGGGGA+TGG 0.481836 tig0030729:-8401 Msa1444450:CDS
AAATGAATCCCATTCCTAAA+CGG 0.482116 tig0030729:+8323 None:intergenic
GCACCTTGCATCATGCCATC+AGG 0.482514 tig0030729:+4073 None:intergenic
AGGAGGTTTGGATTTGGTGC+GGG 0.483449 tig0030729:+8883 None:intergenic
GCCTCCCTAATCACCGTCCC+TGG 0.483881 tig0030729:+8221 None:intergenic
CTTAAGCTGGTTGCAGATGT+TGG 0.485261 tig0030729:-7086 Msa1444450:CDS
CAGGATGCAGATTGGTGCTA+AGG 0.485724 tig0030729:-8270 Msa1444450:CDS
TCTCGTGAAACGTGGCGTAA+AGG 0.486465 tig0030729:-4996 Msa1444450:CDS
ACCTCTCCCTCCATCCCCAC+CGG 0.487820 tig0030729:+8391 None:intergenic
TCGTTGTTACCGTTTAGGAA+TGG 0.488361 tig0030729:-8332 Msa1444450:CDS
GATTAGGGAGGCTGGTAGGG+AGG 0.489143 tig0030729:-8210 Msa1444450:CDS
AACAACAACGCCTTCTGTCC+CGG 0.491853 tig0030729:+8164 None:intergenic
AAAGCCGGAGACGGAGGGAA+CGG 0.496700 tig0030729:-8461 Msa1444450:CDS
GAAGGCGACAAAGTGATTGT+TGG 0.502678 tig0030729:-4974 Msa1444450:CDS
ATGGATAGTCTCATGGAAAC+CGG 0.504266 tig0030729:-5094 Msa1444450:CDS
ATTGGGAAGCAAAGTTGTAA+AGG 0.507169 tig0030729:+6983 None:intergenic
CTCCCTCCATCCCCACCGGA+TGG 0.510309 tig0030729:+8395 None:intergenic
TCCATTCATGGATAGTCTCA+TGG 0.512092 tig0030729:-5101 Msa1444450:CDS
AGGATGCAGATTGGTGCTAA+GGG 0.513323 tig0030729:-8269 Msa1444450:CDS
CGGGCAGGGAGGGGTTCACA+TGG 0.515275 tig0030729:-8299 Msa1444450:CDS
GCGGTTCCGGTGAGGACTTG+TGG 0.516657 tig0030729:+8840 None:intergenic
GCGTCGCCGGCGGAGAGGAG+TGG 0.520485 tig0030729:+8818 None:intergenic
AGGCCATTTAATTGAATCTG+TGG 0.521022 tig0030729:+4546 None:intergenic
GTACCGTTTGGAGGTCCATC+CGG 0.522710 tig0030729:-8410 Msa1444450:CDS
ACTTCCGTTCCCTCCGTCTC+CGG 0.522717 tig0030729:+8457 None:intergenic
GTAGCGAGGGTTGCGTGTGT+TGG 0.522876 tig0030729:+8916 None:intergenic
ATTTGGTGCGGGTGGGTACA+CGG 0.523046 tig0030729:+8894 None:intergenic
TTGTTGCCAGGTGGAAGAGG+TGG 0.524896 tig0030729:-8146 Msa1444450:CDS
CCAGGTGGAAGAGGTGGGAG+AGG 0.525237 tig0030729:-8140 Msa1444450:CDS
TTGAGTTTAGGATTTGGAGG+AGG 0.527636 tig0030729:+8866 None:intergenic
CGGAAGTATGGCTTTCAGGC+GGG 0.528277 tig0030729:-8441 Msa1444450:CDS
GTACCTGTTAAAAGATTCAC+CGG 0.529115 tig0030729:+5075 None:intergenic
GGGGTTCACATGGACAAGGC+AGG 0.529117 tig0030729:-8289 Msa1444450:CDS
AGTTTGATTTCAGAGGAGGA+AGG 0.529524 tig0030729:+8743 None:intergenic
GCTCCGAAGATTGCTGAGAA+TGG 0.532975 tig0030729:-8086 Msa1444450:CDS
GTTCATGTAGGAAGCAAGTT+CGG 0.534930 tig0030729:-4185 Msa1444450:three_prime_UTR
GGTTTGGATTTGGTGCGGGT+GGG 0.536171 tig0030729:+8887 None:intergenic
GTTGGAGTTAGAACTTAAGC+TGG 0.538046 tig0030729:-7099 Msa1444450:intron
TTGTTGTTGCCAGGTGGAAG+AGG 0.541521 tig0030729:-8149 Msa1444450:CDS
CTTTACCGTTATGCTTCTTG+AGG 0.544281 tig0030729:+4117 None:intergenic
CGGGTGGGTACACGGTAGCG+AGG 0.544633 tig0030729:+8902 None:intergenic
GAAGACAGGGAGGAATATGA+AGG 0.545361 tig0030729:-5868 Msa1444450:intron
TTCGGAGAGTTTGATTTCAG+AGG 0.547664 tig0030729:+8736 None:intergenic
AGGTGAAGAATTCTGGAGTG+AGG 0.548335 tig0030729:-8561 Msa1444450:CDS
AGACTATCCATGAATGGAGG+TGG 0.549009 tig0030729:+5106 None:intergenic
CCTCTCCCACCTCTTCCACC+TGG 0.549993 tig0030729:+8140 None:intergenic
CGTTGATGGTTCATCACCAC+AGG 0.551266 tig0030729:-6130 Msa1444450:CDS
CGTTTGGAGGTCCATCCGGT+GGG 0.552725 tig0030729:-8406 Msa1444450:CDS
CTACGATTCAACTATGGTAG+TGG 0.558121 tig0030729:-6940 Msa1444450:CDS
GTGGTTGTGAAGGTGCCACC+AGG 0.559086 tig0030729:-8239 Msa1444450:CDS
GGGACGGTGATTAGGGAGGC+TGG 0.562217 tig0030729:-8218 Msa1444450:CDS
TTGTATGAGCGCTGTCAAAA+GGG 0.563051 tig0030729:-5944 Msa1444450:CDS
TTAGTCAAGATACAGTCGTA+AGG 0.564302 tig0030729:-3987 Msa1444450:three_prime_UTR
GGACAAGGCAGGATGCAGAT+TGG 0.565589 tig0030729:-8278 Msa1444450:CDS
GGAGAGTTTGATTTCAGAGG+AGG 0.566759 tig0030729:+8739 None:intergenic
GTAGGTGGTGGCGTCGCCGG+CGG 0.567740 tig0030729:+8808 None:intergenic
AAAATGAGATGACATATATG+AGG 0.568855 tig0030729:-4160 Msa1444450:three_prime_UTR
CCGTTTGGAGGTCCATCCGG+TGG 0.570745 tig0030729:-8407 Msa1444450:CDS
GAGGAGGTTTGGATTTGGTG+CGG 0.571529 tig0030729:+8882 None:intergenic
CATAGTTGAATCGTAGTCAA+AGG 0.571566 tig0030729:+6947 None:intergenic
CTGAAGATGATGAAGAATTG+GGG 0.573252 tig0030729:-8607 Msa1444450:CDS
CAAAATGTCCTTGAGGCTTG+TGG 0.573547 tig0030729:-5031 Msa1444450:CDS
TCAAAACACCGCATCACCGC+CGG 0.575828 tig0030729:+8503 None:intergenic
AGCTGCCTCAAGAAGCATAA+CGG 0.578319 tig0030729:-4122 Msa1444450:three_prime_UTR
CAGGTGGAAGAGGTGGGAGA+GGG 0.580361 tig0030729:-8139 Msa1444450:CDS
CCACCGGATGGACCTCCAAA+CGG 0.580508 tig0030729:+8407 None:intergenic
AAGGATTGCCGGCGGTGATG+CGG 0.581747 tig0030729:-8511 Msa1444450:CDS
TGTGCTCCTTCAAGAAGACC+TGG 0.583192 tig0030729:+6909 None:intergenic
TCCAGAAGCATACGAAAACT+GGG 0.583546 tig0030729:-6010 Msa1444450:CDS
TCCATGAGACTATCCATGAA+TGG 0.584135 tig0030729:+5100 None:intergenic
TGGTGGCGTCGCCGGCGGAG+AGG 0.584884 tig0030729:+8813 None:intergenic
ATCTTCGCGAAAGCCGGAGA+CGG 0.585928 tig0030729:-8470 Msa1444450:CDS
CGACAAAGTGATTGTTGGAG+AGG 0.586228 tig0030729:-4969 Msa1444450:intron
TCGCGAAAGCCGGAGACGGA+GGG 0.586944 tig0030729:-8466 Msa1444450:CDS
AATTACACACTTGTTCCTGA+TGG 0.587412 tig0030729:-4088 Msa1444450:three_prime_UTR
AGGAAAAGTTGCAATCTCAT+GGG 0.588616 tig0030729:-5978 Msa1444450:CDS
GATGGTGTATCCGGGACAGA+AGG 0.588814 tig0030729:-8174 Msa1444450:CDS
GATGCAGATTGGTGCTAAGG+GGG 0.591936 tig0030729:-8267 Msa1444450:CDS
TTCGCGAAAGCCGGAGACGG+AGG 0.592060 tig0030729:-8467 Msa1444450:CDS
GTGAAACGTGGCGTAAAGGA+AGG 0.597774 tig0030729:-4992 Msa1444450:CDS
CTACACTCGTCTCCCTCTCA+GGG 0.600984 tig0030729:-8789 Msa1444450:CDS
TGTGAAGGTGCCACCAGGGA+CGG 0.608030 tig0030729:-8234 Msa1444450:CDS
ACGGAAGTATGGCTTTCAGG+CGG 0.612451 tig0030729:-8442 Msa1444450:CDS
CAACACCCACAAGTCCTCAC+CGG 0.612873 tig0030729:-8846 Msa1444450:CDS
GGGTGGGTACACGGTAGCGA+GGG 0.615506 tig0030729:+8903 None:intergenic
TTTAAGTCTCTCGTGAAACG+TGG 0.617643 tig0030729:-5004 Msa1444450:CDS
TCCCTAATCACCGTCCCTGG+TGG 0.618886 tig0030729:+8224 None:intergenic
CCTGAGAGGGAGACGAGTGT+AGG 0.619759 tig0030729:+8790 None:intergenic
TAAATACACCACAAGCCTCA+AGG 0.620582 tig0030729:+5023 None:intergenic
GGGAGGGGTTCACATGGACA+AGG 0.621316 tig0030729:-8293 Msa1444450:CDS
GTTCCTGATGGCATGATGCA+AGG 0.622424 tig0030729:-4076 Msa1444450:three_prime_UTR
TGATGAGCAGCAGTTCATGT+AGG 0.626974 tig0030729:-4197 Msa1444450:intron
ATTGCTGAGAATGGTGAACA+AGG 0.627576 tig0030729:-8077 Msa1444450:intron
GAGAGGGAGACGAGTGTAGG+TGG 0.629633 tig0030729:+8793 None:intergenic
AAGATTCCAAAATGTCCTTG+AGG 0.629860 tig0030729:-5038 Msa1444450:CDS
AATTTCTGCGACACACTGAA+AGG 0.631516 tig0030729:-6863 Msa1444450:CDS
GGATGCAGATTGGTGCTAAG+GGG 0.631737 tig0030729:-8268 Msa1444450:CDS
TCGCCGGCGGAGAGGAGTGG+CGG 0.632323 tig0030729:+8821 None:intergenic
GAACCGCCACTCCTCTCCGC+CGG 0.632897 tig0030729:-8824 Msa1444450:CDS
AGGGAGACGAGTGTAGGTGG+TGG 0.634657 tig0030729:+8796 None:intergenic
TAGTTGGTGCTCCAAATGCA+GGG 0.637534 tig0030729:-7061 Msa1444450:CDS
AAGAGAAGTCTTCCCTGAGA+GGG 0.638307 tig0030729:+8777 None:intergenic
ATGAGCGCTGTCAAAAGGGA+AGG 0.638324 tig0030729:-5940 Msa1444450:CDS
GTTTGGAGGTCCATCCGGTG+GGG 0.638510 tig0030729:-8405 Msa1444450:CDS
TTGTGAGCAGTTGAAGACCT+CGG 0.638534 tig0030729:+4015 None:intergenic
ACCAGGGACGGTGATTAGGG+AGG 0.638899 tig0030729:-8222 Msa1444450:CDS
CTCCTTCAAGAAGACCTGGA+AGG 0.639991 tig0030729:+6913 None:intergenic
TAGTGCTGCAAAGCCAGAGG+TGG 0.645616 tig0030729:-7015 Msa1444450:CDS
GAGGAGTGGCGGTTCCGGTG+AGG 0.646720 tig0030729:+8832 None:intergenic
TAGTCAAGATACAGTCGTAA+GGG 0.648354 tig0030729:-3986 Msa1444450:three_prime_UTR
CTAGAAGCACCCAATTAGAG+TGG 0.650772 tig0030729:+4509 None:intergenic
AAGGCGTTGTTGTTGCCAGG+TGG 0.650877 tig0030729:-8155 Msa1444450:CDS
TGTTGCCAGGTGGAAGAGGT+GGG 0.652771 tig0030729:-8145 Msa1444450:CDS
GAAGAGAAGTCTTCCCTGAG+AGG 0.656534 tig0030729:+8776 None:intergenic
TATTAGTGCTGCAAAGCCAG+AGG 0.678097 tig0030729:-7018 Msa1444450:CDS
GAGAGGTGGAAATGTGTACG+TGG 0.681715 tig0030729:-8375 Msa1444450:CDS
CTTCTTGAAGGAGCACACCG+AGG 0.684238 tig0030729:-6903 Msa1444450:CDS
ATGAGACTATCCATGAATGG+AGG 0.684788 tig0030729:+5103 None:intergenic
TGGTAACTTCAATCTCACCA+TGG 0.685757 tig0030729:-8964 Msa1444450:CDS
ATAGAAATGGGAGAGAACCA+TGG 0.689431 tig0030729:+8947 None:intergenic
CATGACCTAAACCAAAACCT+CGG 0.704819 tig0030729:+6886 None:intergenic
TGGTTGTGAAGGTGCCACCA+GGG 0.718648 tig0030729:-8238 Msa1444450:CDS
TCAAACTCAAGATCTGCCTG+TGG 0.718680 tig0030729:+6114 None:intergenic
GAAGGAGAAAGGATTGCCGG+CGG 0.728649 tig0030729:-8519 Msa1444450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTTTGATTTGAA+GGG - tig0030729:4854-4873 Msa1444450:intron 10.0%
!!! GTTTTTAAATTTTGATTTGA+AGG - tig0030729:4853-4872 Msa1444450:intron 15.0%
!!! ACTTGTTTTTTTTTTTGTTT+TGG - tig0030729:5319-5338 Msa1444450:intron 15.0%
!!! AAACTTGATATTTTTTTTCA+TGG + tig0030729:5487-5506 None:intergenic 15.0%
!! TACATATCTATCTTATATTT+AGG - tig0030729:5923-5942 Msa1444450:CDS 15.0%
!!! TTTAAAATTAGTCTTTACAT+TGG - tig0030729:6517-6536 Msa1444450:intron 15.0%
!!! TTAAAATTAGTCTTTACATT+GGG - tig0030729:6518-6537 Msa1444450:intron 15.0%
!!! GGTTCTTTTTTTTTTTTTTT+TGG + tig0030729:7449-7468 None:intergenic 15.0%
!! ATCATACCATTATTAAAATA+AGG + tig0030729:8240-8259 None:intergenic 15.0%
!!! TATTTTAATAATGGTATGAT+TGG - tig0030729:8240-8259 Msa1444450:CDS 15.0%
!! ATCTTACATACATTATTTAT+TGG - tig0030729:8727-8746 Msa1444450:CDS 15.0%
!! AAAACACATAGTATATCTTA+TGG + tig0030729:4668-4687 None:intergenic 20.0%
!!! AGAGAAATGATACTTTTTTT+TGG - tig0030729:4888-4907 Msa1444450:intron 20.0%
!! CCAATCAAAAATACAAATAT+GGG + tig0030729:5150-5169 None:intergenic 20.0%
!! ACCAATCAAAAATACAAATA+TGG + tig0030729:5151-5170 None:intergenic 20.0%
!! ACTATCAAATATAATCTTAG+AGG + tig0030729:5243-5262 None:intergenic 20.0%
!! AAAAAAATCGTTTAAGAGAA+GGG + tig0030729:6040-6059 None:intergenic 20.0%
!! AAAAAAAATCGTTTAAGAGA+AGG + tig0030729:6041-6060 None:intergenic 20.0%
!! ACACTTGAAATATATAACTT+AGG - tig0030729:6066-6085 Msa1444450:CDS 20.0%
!! CAAAAATAAAGGTAAGATAA+CGG + tig0030729:6198-6217 None:intergenic 20.0%
!! TATATCAATGTTTAAACCAA+TGG + tig0030729:6361-6380 None:intergenic 20.0%
!!! ATTTTAAACAGCAGATTTAA+GGG + tig0030729:6505-6524 None:intergenic 20.0%
!!! AATTTTAAACAGCAGATTTA+AGG + tig0030729:6506-6525 None:intergenic 20.0%
!! TTGTTATAAGCAACTATAAA+TGG + tig0030729:6646-6665 None:intergenic 20.0%
!! TATAGTTGCTTATAACAAAA+TGG - tig0030729:6648-6667 Msa1444450:intron 20.0%
!! TTTACAGAAAAAGAATAATC+TGG + tig0030729:6887-6906 None:intergenic 20.0%
!! GAATAGCATGAAAAATATAA+AGG - tig0030729:7475-7494 Msa1444450:intron 20.0%
!!! AAATATCAATATTTTCGATC+AGG - tig0030729:8436-8455 Msa1444450:CDS 20.0%
!!! AATATCAATATTTTCGATCA+GGG - tig0030729:8437-8456 Msa1444450:CDS 20.0%
!!! ATGATATTGTGTTTTGTAAT+AGG - tig0030729:8813-8832 Msa1444450:CDS 20.0%
!!! ATTTTATGAAATTAGAGTGA+AGG - tig0030729:8885-8904 Msa1444450:CDS 20.0%
! TTGGAACAAGATATAGAAAT+GGG + tig0030729:3753-3772 None:intergenic 25.0%
!! GAAATCAATGGTAATTTTGA+AGG - tig0030729:4044-4063 Msa1444450:three_prime_UTR 25.0%
!!! AATGGTAATTTTGAAGGAAT+TGG - tig0030729:4050-4069 Msa1444450:three_prime_UTR 25.0%
!!! GATGTTTTAAAAACCAAACT+AGG - tig0030729:4697-4716 Msa1444450:intron 25.0%
! TACTTTAAACCATTAAAACC+AGG + tig0030729:4788-4807 None:intergenic 25.0%
! AAAGTAGTTGAACTATGATT+CGG - tig0030729:4802-4821 Msa1444450:intron 25.0%
! TGTAGGTTTGATGTTTAATT+CGG - tig0030729:4831-4850 Msa1444450:intron 25.0%
! AAAACACACATAAAAACCAA+AGG + tig0030729:4952-4971 None:intergenic 25.0%
!!! CCCATATTTGTATTTTTGAT+TGG - tig0030729:5147-5166 Msa1444450:intron 25.0%
!!! AAACTAGACTTGTTTTTGTT+TGG - tig0030729:5423-5442 Msa1444450:intron 25.0%
!! ATTTTATATAGTTAGGCACT+TGG - tig0030729:5898-5917 Msa1444450:CDS 25.0%
!! TTTTATATAGTTAGGCACTT+GGG - tig0030729:5899-5918 Msa1444450:CDS 25.0%
!!! TAGAGTTTTTTGAAGGAAAA+AGG + tig0030729:6007-6026 None:intergenic 25.0%
!!! TGAAGTTTAGAGTTTTTTGA+AGG + tig0030729:6014-6033 None:intergenic 25.0%
!! TGTTTGCTTATTTAAGCTTT+TGG - tig0030729:6159-6178 Msa1444450:intron 25.0%
! ACGGAAAAAAGCAAAAATAA+AGG + tig0030729:6209-6228 None:intergenic 25.0%
! TATCTACTAATCGATTGATT+TGG + tig0030729:6259-6278 None:intergenic 25.0%
! TGTAAAAACTTCTTTGCATT+TGG - tig0030729:6901-6920 Msa1444450:CDS 25.0%
! AAAAATCTCAAAATCACTGA+TGG + tig0030729:7010-7029 None:intergenic 25.0%
! CATGTAATAAAACTACAAAC+TGG + tig0030729:7184-7203 None:intergenic 25.0%
! GACAAATATAGAAAAAATGC+AGG + tig0030729:7275-7294 None:intergenic 25.0%
! TATTTGTGATCACATAAGTA+AGG - tig0030729:7303-7322 Msa1444450:intron 25.0%
!!! TTTTTCATGCTATTCTAGAA+CGG + tig0030729:7470-7489 None:intergenic 25.0%
!! TGTTAGTAAAAAAGTGTATC+AGG - tig0030729:7534-7553 Msa1444450:intron 25.0%
!!! GCAAGACCTTATTTTAATAA+TGG - tig0030729:8231-8250 Msa1444450:CDS 25.0%
!!! TATTTAATGAGAGTATTGAC+AGG + tig0030729:8292-8311 None:intergenic 25.0%
! ATATTCCAGGAAATTGTTAT+AGG + tig0030729:8352-8371 None:intergenic 25.0%
! AAAATGAGATGACATATATG+AGG - tig0030729:8525-8544 Msa1444450:CDS 25.0%
!!! TACATTATTTATTGGCTTGA+AGG - tig0030729:8735-8754 Msa1444450:CDS 25.0%
!!! ACATTATTTATTGGCTTGAA+GGG - tig0030729:8736-8755 Msa1444450:CDS 25.0%
!! AACAATTAGATTTTCTTCTG+TGG + tig0030729:8782-8801 None:intergenic 25.0%
GTTGGAACAAGATATAGAAA+TGG + tig0030729:3754-3773 None:intergenic 30.0%
GAAGAAGAAGAAGAAATCAA+TGG - tig0030729:4032-4051 Msa1444450:three_prime_UTR 30.0%
TCTGAAGATGATGAAGAATT+GGG - tig0030729:4077-4096 Msa1444450:three_prime_UTR 30.0%
AAATGAATCCCATTCCTAAA+CGG + tig0030729:4365-4384 None:intergenic 30.0%
! TTAGGAATGGGATTCATTTT+CGG - tig0030729:4366-4385 Msa1444450:intron 30.0%
ACACATAGTATATCTTATGG+TGG + tig0030729:4665-4684 None:intergenic 30.0%
ACTAATTAAACTGCCTAGTT+TGG + tig0030729:4713-4732 None:intergenic 30.0%
AACTGACATTGTCTATTGTA+CGG - tig0030729:4742-4761 Msa1444450:intron 30.0%
! ATTCAAACACAATTTTGTCC+TGG - tig0030729:4767-4786 Msa1444450:intron 30.0%
!!! CAATTTTGTCCTGGTTTTAA+TGG - tig0030729:4776-4795 Msa1444450:intron 30.0%
!!! TTGATTTGAAGGGTGTTTTT+AGG - tig0030729:4864-4883 Msa1444450:intron 30.0%
TGGAAGTTAAAAGTAAGACA+TGG - tig0030729:4990-5009 Msa1444450:CDS 30.0%
GTCATTTAAACATCGAAACA+CGG + tig0030729:5047-5066 None:intergenic 30.0%
TTAGAGGAACAAAACTGAAA+AGG + tig0030729:5227-5246 None:intergenic 30.0%
TTATTCTTGTTCGAGATTGT+TGG - tig0030729:5459-5478 Msa1444450:intron 30.0%
TATTCTTGTTCGAGATTGTT+GGG - tig0030729:5460-5479 Msa1444450:intron 30.0%
!!! TTCTTTTGTTTTCCTGAATC+TGG - tig0030729:5507-5526 Msa1444450:intron 30.0%
! CGTATATGAATTTGAAACTC+AGG + tig0030729:5533-5552 None:intergenic 30.0%
!!! AATGCTGGTTTCTTTTGATT+AGG - tig0030729:5561-5580 Msa1444450:intron 30.0%
CAATACGAAGTTAGATCAAA+AGG + tig0030729:6101-6120 None:intergenic 30.0%
GAGATATAACAGTTATCAGA+CGG + tig0030729:6228-6247 None:intergenic 30.0%
AACATAAAGACATTCAGAGT+GGG + tig0030729:6291-6310 None:intergenic 30.0%
TCCAAAAATTCATTGTTCCA+AGG - tig0030729:6330-6349 Msa1444450:intron 30.0%
CCAAAAATTCATTGTTCCAA+GGG - tig0030729:6331-6350 Msa1444450:intron 30.0%
ACACTCATAAGCTAAATAGA+TGG + tig0030729:6388-6407 None:intergenic 30.0%
GCGTAAAAATAAAGAAGACA+GGG - tig0030729:6804-6823 Msa1444450:intron 30.0%
TAAAAATAAAGAAGACAGGG+AGG - tig0030729:6807-6826 Msa1444450:intron 30.0%
CTAATCTAACCTATTTCAGA+TGG - tig0030729:6925-6944 Msa1444450:CDS 30.0%
ATGATAGCAGTTCAAATGTT+TGG - tig0030729:7031-7050 Msa1444450:CDS 30.0%
GTAATAAAACTACAAACTGG+TGG + tig0030729:7181-7200 None:intergenic 30.0%
!!! TTTTTTGGCAAAGTCTAGAA+AGG + tig0030729:7434-7453 None:intergenic 30.0%
AGCATGAAAAATATAAAGGC+TGG - tig0030729:7479-7498 Msa1444450:intron 30.0%
!!! GACATTTTGGAATCTTTTCT+CGG + tig0030729:7643-7662 None:intergenic 30.0%
ATCTTATTGCTGATGTTTCT+AGG + tig0030729:7949-7968 None:intergenic 30.0%
AGAAACATCAGCAATAAGAT+AGG - tig0030729:7949-7968 Msa1444450:intron 30.0%
GAAACATCAGCAATAAGATA+GGG - tig0030729:7950-7969 Msa1444450:intron 30.0%
AAACATCAGCAATAAGATAG+GGG - tig0030729:7951-7970 Msa1444450:intron 30.0%
TGTCCACAGATTCAATTAAA+TGG - tig0030729:8136-8155 Msa1444450:CDS 30.0%
ATTCAATTAAATGGCCTGAA+TGG - tig0030729:8145-8164 Msa1444450:CDS 30.0%
ATATAGTACAGCATTTACCA+TGG - tig0030729:8309-8328 Msa1444450:CDS 30.0%
CCATTATGTACAAATATTCC+AGG + tig0030729:8365-8384 None:intergenic 30.0%
CCTGGAATATTTGTACATAA+TGG - tig0030729:8362-8381 Msa1444450:CDS 30.0%
! AACACTTTTATGATCACTTC+TGG + tig0030729:8928-8947 None:intergenic 30.0%
!! TTGGTGAATTGGTGTTGATT+CGG + tig0030729:3970-3989 None:intergenic 35.0%
GTCTGAAGATGATGAAGAAT+TGG - tig0030729:4076-4095 Msa1444450:three_prime_UTR 35.0%
CTGAAGATGATGAAGAATTG+GGG - tig0030729:4078-4097 Msa1444450:three_prime_UTR 35.0%
TGATGAAGAATTGGGGTTTA+TGG - tig0030729:4085-4104 Msa1444450:three_prime_UTR 35.0%
TTGAAGAAGGTGAAGAATTC+TGG - tig0030729:4117-4136 Msa1444450:three_prime_UTR 35.0%
AACTGAAGAAGAAGAAGTGA+AGG - tig0030729:4148-4167 Msa1444450:three_prime_UTR 35.0%
TGAATTCGTTGTTACCGTTT+AGG - tig0030729:4348-4367 Msa1444450:intron 35.0%
! TAGGAATGGGATTCATTTTC+GGG - tig0030729:4367-4386 Msa1444450:intron 35.0%
TGATACTTTGATGTCCAGTA+TGG - tig0030729:4923-4942 Msa1444450:intron 35.0%
! TTTTAAATGCCTGCAAGTTG+TGG - tig0030729:4970-4989 Msa1444450:CDS 35.0%
!!! TTTTAACTTCCACAACTTGC+AGG + tig0030729:4982-5001 None:intergenic 35.0%
GACATGGAGATAAGCATATA+CGG - tig0030729:5006-5025 Msa1444450:CDS 35.0%
! AACAAGTCTAGTTTCAGACA+TGG + tig0030729:5306-5325 None:intergenic 35.0%
! AACAAGTCTAGTTTCAGACA+TGG + tig0030729:5306-5325 None:intergenic 35.0%
ATTCTTGTTCGAGATTGTTG+GGG - tig0030729:5461-5480 Msa1444450:intron 35.0%
ATATACGAGTCTAAGAATGC+TGG - tig0030729:5546-5565 Msa1444450:intron 35.0%
!! GTTTCTTTTGATTAGGTGGT+TGG - tig0030729:5568-5587 Msa1444450:intron 35.0%
TTGGGAAGCAAAGTTGTAAA+GGG + tig0030729:5704-5723 None:intergenic 35.0%
ATTGGGAAGCAAAGTTGTAA+AGG + tig0030729:5705-5724 None:intergenic 35.0%
CATAGTTGAATCGTAGTCAA+AGG + tig0030729:5741-5760 None:intergenic 35.0%
CTTTGACTACGATTCAACTA+TGG - tig0030729:5739-5758 Msa1444450:intron 35.0%
TTGAAGGAAAAAGGAAAGCA+AGG + tig0030729:5998-6017 None:intergenic 35.0%
!! TAATCGATTGATTTGGAGTC+TGG + tig0030729:6252-6271 None:intergenic 35.0%
CAACATAAAGACATTCAGAG+TGG + tig0030729:6292-6311 None:intergenic 35.0%
! CCCTTGGAACAATGAATTTT+TGG + tig0030729:6334-6353 None:intergenic 35.0%
TTAAACCAATGGATAACCCT+TGG + tig0030729:6350-6369 None:intergenic 35.0%
! ATTTTTCTGTATGAACCCTC+TGG - tig0030729:6420-6439 Msa1444450:intron 35.0%
TGAAATAGCATACTACCAGA+GGG + tig0030729:6438-6457 None:intergenic 35.0%
TTGAAATAGCATACTACCAG+AGG + tig0030729:6439-6458 None:intergenic 35.0%
ATTTAAGGGTGAGAAAATGG+AGG + tig0030729:6491-6510 None:intergenic 35.0%
CAGATTTAAGGGTGAGAAAA+TGG + tig0030729:6494-6513 None:intergenic 35.0%
TTTCAGATACATGTCGTTGA+TGG - tig0030729:6541-6560 Msa1444450:intron 35.0%
! AGATTGCAACTTTTCCTTGA+AGG + tig0030729:6704-6723 None:intergenic 35.0%
AAGGAAAAGTTGCAATCTCA+TGG - tig0030729:6706-6725 Msa1444450:intron 35.0%
AGGAAAAGTTGCAATCTCAT+GGG - tig0030729:6707-6726 Msa1444450:intron 35.0%
GGCGTAAAAATAAAGAAGAC+AGG - tig0030729:6803-6822 Msa1444450:intron 35.0%
! ATATCTCGTCCATCTGAAAT+AGG + tig0030729:6937-6956 None:intergenic 35.0%
TATTTCAGATGGACGAGATA+TGG - tig0030729:6936-6955 Msa1444450:CDS 35.0%
CATGAATCATATTGCTCATG+CGG - tig0030729:6963-6982 Msa1444450:CDS 35.0%
! GTTTTGTCCAGATGACAAAT+TGG - tig0030729:7079-7098 Msa1444450:CDS 35.0%
!!! AACAATAGCCAGCTACTTTT+TGG + tig0030729:7393-7412 None:intergenic 35.0%
AAAAAGTAGCTGGCTATTGT+TGG - tig0030729:7392-7411 Msa1444450:intron 35.0%
! AAACCGGTGAATCTTTTAAC+AGG - tig0030729:7607-7626 Msa1444450:intron 35.0%
GTACCTGTTAAAAGATTCAC+CGG + tig0030729:7613-7632 None:intergenic 35.0%
AAGATTCCAAAATGTCCTTG+AGG - tig0030729:7647-7666 Msa1444450:intron 35.0%
CGAATGAAGCAATTAGCATA+TGG - tig0030729:7794-7813 Msa1444450:intron 35.0%
TCGAAACATTGCTTCCTTAA+AGG - tig0030729:7859-7878 Msa1444450:intron 35.0%
AAACATTGCTTCCTTAAAGG+TGG - tig0030729:7862-7881 Msa1444450:intron 35.0%
TAGTGTTTGTTCCACCTTTA+AGG + tig0030729:7876-7895 None:intergenic 35.0%
CAAATTCTAGGTTACTCTTG+AGG + tig0030729:7919-7938 None:intergenic 35.0%
CTAGGCTAGAAACAAATTCT+AGG + tig0030729:7931-7950 None:intergenic 35.0%
CTGATACATAGCAGAACAAA+TGG + tig0030729:8061-8080 None:intergenic 35.0%
TTGTTCTGCTATGTATCAGA+TGG - tig0030729:8062-8081 Msa1444450:intron 35.0%
TGTATCAGATGGAGATGATA+TGG - tig0030729:8073-8092 Msa1444450:intron 35.0%
AGGCCATTTAATTGAATCTG+TGG + tig0030729:8142-8161 None:intergenic 35.0%
GAAGTAATGCCACTCTAATT+GGG - tig0030729:8167-8186 Msa1444450:CDS 35.0%
TTTCGTAGTTGCAGTACATA+TGG + tig0030729:8204-8223 None:intergenic 35.0%
ATGTACTGCAACTACGAAAT+AGG - tig0030729:8205-8224 Msa1444450:CDS 35.0%
AATTACACACTTGTTCCTGA+TGG - tig0030729:8597-8616 Msa1444450:CDS 35.0%
TTAGTCAAGATACAGTCGTA+AGG - tig0030729:8698-8717 Msa1444450:CDS 35.0%
TAGTCAAGATACAGTCGTAA+GGG - tig0030729:8699-8718 Msa1444450:CDS 35.0%
! ACTTTTATGATCACTTCTGG+TGG + tig0030729:8925-8944 None:intergenic 35.0%
TGGTAACTTCAATCTCACCA+TGG - tig0030729:3721-3740 Msa1444450:three_prime_UTR 40.0%
ATAGAAATGGGAGAGAACCA+TGG + tig0030729:3741-3760 None:intergenic 40.0%
ATTTGGAGGAGGTTTGGATT+TGG + tig0030729:3811-3830 None:intergenic 40.0%
! TTTAGGATTTGGAGGAGGTT+TGG + tig0030729:3817-3836 None:intergenic 40.0%
! TTGAGTTTAGGATTTGGAGG+AGG + tig0030729:3822-3841 None:intergenic 40.0%
! GTGTTGAGTTTAGGATTTGG+AGG + tig0030729:3825-3844 None:intergenic 40.0%
!! TGGGTGTTGAGTTTAGGATT+TGG + tig0030729:3828-3847 None:intergenic 40.0%
! AGTTTGATTTCAGAGGAGGA+AGG + tig0030729:3945-3964 None:intergenic 40.0%
! TTCGGAGAGTTTGATTTCAG+AGG + tig0030729:3952-3971 None:intergenic 40.0%
TTGTGGAGCAATTGGTGAAT+TGG + tig0030729:3981-4000 None:intergenic 40.0%
TATCGAGTTTGTGGAGCAAT+TGG + tig0030729:3989-4008 None:intergenic 40.0%
CATCATCGTTATCGAGTTTG+TGG + tig0030729:3998-4017 None:intergenic 40.0%
AGAATTGGGGTTTATGGATG+AGG - tig0030729:4091-4110 Msa1444450:three_prime_UTR 40.0%
ATGGATGAGGAGATTGAAGA+AGG - tig0030729:4104-4123 Msa1444450:three_prime_UTR 40.0%
GAAGAAGAAGTGAAGGAGAA+AGG - tig0030729:4155-4174 Msa1444450:three_prime_UTR 40.0%
TCGTTGTTACCGTTTAGGAA+TGG - tig0030729:4353-4372 Msa1444450:intron 40.0%
CGTTGTTACCGTTTAGGAAT+GGG - tig0030729:4354-4373 Msa1444450:intron 40.0%
!! GATTTTGGAGATGGTGTATC+CGG - tig0030729:4502-4521 Msa1444450:three_prime_UTR 40.0%
!! ATTTTGGAGATGGTGTATCC+GGG - tig0030729:4503-4522 Msa1444450:three_prime_UTR 40.0%
!!! GGAATGCTGCTTTTAAGAGT+GGG - tig0030729:4567-4586 Msa1444450:CDS 40.0%
TCACCATTCTCAGCAATCTT+CGG + tig0030729:4605-4624 None:intergenic 40.0%
ATTGCTGAGAATGGTGAACA+AGG - tig0030729:4608-4627 Msa1444450:intron 40.0%
! GTAGTTGAACTATGATTCGG+TGG - tig0030729:4805-4824 Msa1444450:intron 40.0%
AAAACCAAAGGACACCATAC+TGG + tig0030729:4940-4959 None:intergenic 40.0%
GAAAGAAGTCGTGACTTTAG+AGG - tig0030729:5123-5142 Msa1444450:CDS 40.0%
GAGTATGTAACGTATGTGAG+TGG - tig0030729:5171-5190 Msa1444450:intron 40.0%
TGGCATTAAAAGCGAGCATA+TGG - tig0030729:5191-5210 Msa1444450:intron 40.0%
ATTAAAAGCGAGCATATGGC+TGG - tig0030729:5195-5214 Msa1444450:intron 40.0%
TGTCCACAGTCCATAACAAA+CGG - tig0030729:5267-5286 Msa1444450:intron 40.0%
!!! TTTTGTTTTGGCTTTCGCAC+CGG - tig0030729:5331-5350 Msa1444450:intron 40.0%
!! GCTGGTTTCTTTTGATTAGG+TGG - tig0030729:5564-5583 Msa1444450:intron 40.0%
GTTGGAGTTAGAACTTAAGC+TGG - tig0030729:5586-5605 Msa1444450:intron 40.0%
GTTGCAGATGTTGGTATAGT+TGG - tig0030729:5608-5627 Msa1444450:intron 40.0%
TACAACTTTGCTTCCCAATC+TGG - tig0030729:5706-5725 Msa1444450:intron 40.0%
ACAACTTTGCTTCCCAATCT+GGG - tig0030729:5707-5726 Msa1444450:intron 40.0%
CTACGATTCAACTATGGTAG+TGG - tig0030729:5745-5764 Msa1444450:intron 40.0%
CATGACCTAAACCAAAACCT+CGG + tig0030729:5802-5821 None:intergenic 40.0%
AATTTCTGCGACACACTGAA+AGG - tig0030729:5822-5841 Msa1444450:intron 40.0%
TTGTTCCAAGGGTTATCCAT+TGG - tig0030729:6342-6361 Msa1444450:intron 40.0%
! TTCCAGAAGCATACGAAAAC+TGG - tig0030729:6674-6693 Msa1444450:intron 40.0%
! TCCAGAAGCATACGAAAACT+GGG - tig0030729:6675-6694 Msa1444450:intron 40.0%
TTGACAGCGCTCATACAAAA+AGG + tig0030729:6739-6758 None:intergenic 40.0%
! TTTGTATGAGCGCTGTCAAA+AGG - tig0030729:6740-6759 Msa1444450:intron 40.0%
! TTGTATGAGCGCTGTCAAAA+GGG - tig0030729:6741-6760 Msa1444450:intron 40.0%
! TCAAATGTTTGGAGCGTAGT+TGG - tig0030729:7042-7061 Msa1444450:CDS 40.0%
! CAAATGTTTGGAGCGTAGTT+GGG - tig0030729:7043-7062 Msa1444450:CDS 40.0%
TTGTCCAGATGACAAATTGG+CGG - tig0030729:7082-7101 Msa1444450:CDS 40.0%
AGCCTAAACCAAAAAGTAGC+TGG - tig0030729:7382-7401 Msa1444450:intron 40.0%
!!! AGCCAGCTACTTTTTGGTTT+AGG + tig0030729:7387-7406 None:intergenic 40.0%
ACATGTATCAAGCATCAGAG+AGG + tig0030729:7517-7536 None:intergenic 40.0%
TGAATGGAGGTGGAAATTTC+AGG + tig0030729:7572-7591 None:intergenic 40.0%
GAAATTTCCACCTCCATTCA+TGG - tig0030729:7572-7591 Msa1444450:intron 40.0%
ATGAGACTATCCATGAATGG+AGG + tig0030729:7585-7604 None:intergenic 40.0%
TCCATTCATGGATAGTCTCA+TGG - tig0030729:7584-7603 Msa1444450:intron 40.0%
TCCATGAGACTATCCATGAA+TGG + tig0030729:7588-7607 None:intergenic 40.0%
ATGGATAGTCTCATGGAAAC+CGG - tig0030729:7591-7610 Msa1444450:intron 40.0%
TAAATACACCACAAGCCTCA+AGG + tig0030729:7665-7684 None:intergenic 40.0%
TTTAAGTCTCTCGTGAAACG+TGG - tig0030729:7681-7700 Msa1444450:intron 40.0%
TGGTCACTGGGTATGAATTA+TGG + tig0030729:8041-8060 None:intergenic 40.0%
TAGCAGAACAAATGGTCACT+GGG + tig0030729:8053-8072 None:intergenic 40.0%
ATAGCAGAACAAATGGTCAC+TGG + tig0030729:8054-8073 None:intergenic 40.0%
CATGACTCCTCAAACAAATC+TGG - tig0030729:8096-8115 Msa1444450:CDS 40.0%
! TGATGCACCAGATTTGTTTG+AGG + tig0030729:8106-8125 None:intergenic 40.0%
GGAAGTAATGCCACTCTAAT+TGG - tig0030729:8166-8185 Msa1444450:CDS 40.0%
!! GAGAGTATTGACAGGTTTCA+TGG + tig0030729:8284-8303 None:intergenic 40.0%
CTTGGCAATAAGAGAAACCA+TGG + tig0030729:8329-8348 None:intergenic 40.0%
CCAGGAAATTGTTATAGGCT+TGG + tig0030729:8347-8366 None:intergenic 40.0%
CCAAGCCTATAACAATTTCC+TGG - tig0030729:8344-8363 Msa1444450:CDS 40.0%
GTTCATGTAGGAAGCAAGTT+CGG - tig0030729:8500-8519 Msa1444450:CDS 40.0%
CTTTACCGTTATGCTTCTTG+AGG + tig0030729:8571-8590 None:intergenic 40.0%
!! TTTTATTTGACGTGAAGCCG+AGG - tig0030729:8653-8672 Msa1444450:CDS 40.0%
!! GACTTGTGGGTGTTGAGTTT+AGG + tig0030729:3834-3853 None:intergenic 45.0%
AAGAGAAGTCTTCCCTGAGA+GGG + tig0030729:3911-3930 None:intergenic 45.0%
! GGAGAGTTTGATTTCAGAGG+AGG + tig0030729:3949-3968 None:intergenic 45.0%
!! AGGTGAAGAATTCTGGAGTG+AGG - tig0030729:4124-4143 Msa1444450:three_prime_UTR 45.0%
AGTGAAGGAGAAAGGATTGC+CGG - tig0030729:4163-4182 Msa1444450:three_prime_UTR 45.0%
GAGAAATACGTACCGTTTGG+AGG - tig0030729:4266-4285 Msa1444450:intron 45.0%
!! AATGGGATTCATTTTCGGGC+AGG - tig0030729:4371-4390 Msa1444450:intron 45.0%
!! ATGGGATTCATTTTCGGGCA+GGG - tig0030729:4372-4391 Msa1444450:intron 45.0%
!! AGGATGCAGATTGGTGCTAA+GGG - tig0030729:4416-4435 Msa1444450:intron 45.0%
!!! GGGAATGCTGCTTTTAAGAG+TGG - tig0030729:4566-4585 Msa1444450:CDS 45.0%
!! CTATGATTCGGTGGTCTTGT+AGG - tig0030729:4814-4833 Msa1444450:intron 45.0%
ATGTCCAGTATGGTGTCCTT+TGG - tig0030729:4933-4952 Msa1444450:intron 45.0%
TGACTTTCCTACAGAGGACA+CGG + tig0030729:5082-5101 None:intergenic 45.0%
AAGTCGTGACTTTCCTACAG+AGG + tig0030729:5088-5107 None:intergenic 45.0%
!! TCTCCGTTTGTTATGGACTG+TGG + tig0030729:5273-5292 None:intergenic 45.0%
! CGCATCATCTCCGTTTGTTA+TGG + tig0030729:5280-5299 None:intergenic 45.0%
TAACAAACGGAGATGATGCG+TGG - tig0030729:5280-5299 Msa1444450:intron 45.0%
TTGAAACTCAGGCCAGATTC+AGG + tig0030729:5522-5541 None:intergenic 45.0%
CTTAAGCTGGTTGCAGATGT+TGG - tig0030729:5599-5618 Msa1444450:intron 45.0%
! ATAGTTGGTGCTCCAAATGC+AGG - tig0030729:5623-5642 Msa1444450:intron 45.0%
! TAGTTGGTGCTCCAAATGCA+GGG - tig0030729:5624-5643 Msa1444450:intron 45.0%
AGTGTACTCTTCCCTGCATT+TGG + tig0030729:5638-5657 None:intergenic 45.0%
TATTAGTGCTGCAAAGCCAG+AGG - tig0030729:5667-5686 Msa1444450:intron 45.0%
! AAGGGATAATTTGCCACCTC+TGG + tig0030729:5686-5705 None:intergenic 45.0%
AAGGAAACAACGCCCAGATT+GGG + tig0030729:5722-5741 None:intergenic 45.0%
AAAGGAAACAACGCCCAGAT+TGG + tig0030729:5723-5742 None:intergenic 45.0%
GTTAGATCAAAAGGTCGCAG+TGG + tig0030729:6092-6111 None:intergenic 45.0%
! AAAGACATTCAGAGTGGGCT+GGG + tig0030729:6286-6305 None:intergenic 45.0%
TAAAGACATTCAGAGTGGGC+TGG + tig0030729:6287-6306 None:intergenic 45.0%
TCAAACTCAAGATCTGCCTG+TGG + tig0030729:6574-6593 None:intergenic 45.0%
AATGGCTTCTCAGCAAGTTC+AGG + tig0030729:6628-6647 None:intergenic 45.0%
! TCCCAGTTTTCGTATGCTTC+TGG + tig0030729:6679-6698 None:intergenic 45.0%
CGAAAACTGGGAATCCTTCA+AGG - tig0030729:6687-6706 Msa1444450:intron 45.0%
TATGCGCTGCTTATGAGCTT+TGG - tig0030729:6782-6801 Msa1444450:intron 45.0%
GAAGACAGGGAGGAATATGA+AGG - tig0030729:6817-6836 Msa1444450:intron 45.0%
TGTATCAAGCATCAGAGAGG+AGG + tig0030729:7514-7533 None:intergenic 45.0%
AGACTATCCATGAATGGAGG+TGG + tig0030729:7582-7601 None:intergenic 45.0%
! CACAAGCCTCAAGGACATTT+TGG + tig0030729:7656-7675 None:intergenic 45.0%
CAAAATGTCCTTGAGGCTTG+TGG - tig0030729:7654-7673 Msa1444450:intron 45.0%
CTTCATTCGTCATGCTAGCA+AGG + tig0030729:7783-7802 None:intergenic 45.0%
GAGTGGCATTACTTCCATTC+AGG + tig0030729:8162-8181 None:intergenic 45.0%
!! CTAGAAGCACCCAATTAGAG+TGG + tig0030729:8179-8198 None:intergenic 45.0%
CAGGTTTCATGGAGATAGCA+AGG + tig0030729:8273-8292 None:intergenic 45.0%
TGATGAGCAGCAGTTCATGT+AGG - tig0030729:8488-8507 Msa1444450:CDS 45.0%
! AGCTGCCTCAAGAAGCATAA+CGG - tig0030729:8563-8582 Msa1444450:CDS 45.0%
TTGTGAGCAGTTGAAGACCT+CGG + tig0030729:8673-8692 None:intergenic 45.0%
!!! TTATTATATTTTATATAGTT+AGG - tig0030729:5891-5910 Msa1444450:CDS 5.0%
!! AGGAGGTTTGGATTTGGTGC+GGG + tig0030729:3805-3824 None:intergenic 50.0%
!! GAGGAGGTTTGGATTTGGTG+CGG + tig0030729:3806-3825 None:intergenic 50.0%
GAAGAGAAGTCTTCCCTGAG+AGG + tig0030729:3912-3931 None:intergenic 50.0%
AGAGGAGGAAGGTGAGAAAG+TGG + tig0030729:3934-3953 None:intergenic 50.0%
! CTTTCGCGAAGATTTTCGCC+CGG + tig0030729:4208-4227 None:intergenic 50.0%
GCGAAAATCTTCGCGAAAGC+CGG - tig0030729:4209-4228 Msa1444450:intron 50.0%
! GGAACGGAAGTATGGCTTTC+AGG - tig0030729:4240-4259 Msa1444450:intron 50.0%
! ACGGAAGTATGGCTTTCAGG+CGG - tig0030729:4243-4262 Msa1444450:intron 50.0%
CGGGAGAAATACGTACCGTT+TGG - tig0030729:4263-4282 Msa1444450:intron 50.0%
GAGAGGTGGAAATGTGTACG+TGG - tig0030729:4310-4329 Msa1444450:intron 50.0%
!! GATTCATTTTCGGGCAGGGA+GGG - tig0030729:4376-4395 Msa1444450:intron 50.0%
!! ATTCATTTTCGGGCAGGGAG+GGG - tig0030729:4377-4396 Msa1444450:intron 50.0%
!! CAGGATGCAGATTGGTGCTA+AGG - tig0030729:4415-4434 Msa1444450:intron 50.0%
!! GGATGCAGATTGGTGCTAAG+GGG - tig0030729:4417-4436 Msa1444450:intron 50.0%
!! GATGCAGATTGGTGCTAAGG+GGG - tig0030729:4418-4437 Msa1444450:intron 50.0%
! TGGTAGGGAGGAGGTGATTT+TGG - tig0030729:4487-4506 Msa1444450:three_prime_UTR 50.0%
!! GGAGGAGGTGATTTTGGAGA+TGG - tig0030729:4493-4512 Msa1444450:three_prime_UTR 50.0%
AACAACAACGCCTTCTGTCC+CGG + tig0030729:4524-4543 None:intergenic 50.0%
! TTGTTGTTGCCAGGTGGAAG+AGG - tig0030729:4536-4555 Msa1444450:CDS 50.0%
GCTCCGAAGATTGCTGAGAA+TGG - tig0030729:4599-4618 Msa1444450:CDS 50.0%
TATGTGTCCGTGTCCTCTGT+AGG - tig0030729:5072-5091 Msa1444450:CDS 50.0%
ATTAGTCGCCCACCTTTGGT+GGG + tig0030729:5364-5383 None:intergenic 50.0%
GACCTTCCAGGTCTTCTTGA+AGG - tig0030729:5770-5789 Msa1444450:intron 50.0%
CTCCTTCAAGAAGACCTGGA+AGG + tig0030729:5775-5794 None:intergenic 50.0%
TGTGCTCCTTCAAGAAGACC+TGG + tig0030729:5779-5798 None:intergenic 50.0%
!!! GCACACCGAGGTTTTGGTTT+AGG - tig0030729:5794-5813 Msa1444450:intron 50.0%
!! CACTGAAAGGTGTTCTGCAC+TGG - tig0030729:5835-5854 Msa1444450:intron 50.0%
!! GAAAGGTGTTCTGCACTGGT+AGG - tig0030729:5839-5858 Msa1444450:intron 50.0%
AGGGTGAGAAAATGGAGGAG+CGG + tig0030729:6486-6505 None:intergenic 50.0%
!! CGTTGATGGTTCATCACCAC+AGG - tig0030729:6555-6574 Msa1444450:intron 50.0%
! ATGAGCGCTGTCAAAAGGGA+AGG - tig0030729:6745-6764 Msa1444450:intron 50.0%
CCTACCGCCAATTTGTCATC+TGG + tig0030729:7089-7108 None:intergenic 50.0%
CCAGATGACAAATTGGCGGT+AGG - tig0030729:7086-7105 Msa1444450:CDS 50.0%
TCTCGTGAAACGTGGCGTAA+AGG - tig0030729:7689-7708 Msa1444450:intron 50.0%
GTGAAACGTGGCGTAAAGGA+AGG - tig0030729:7693-7712 Msa1444450:intron 50.0%
GTTCCTGATGGCATGATGCA+AGG - tig0030729:8609-8628 Msa1444450:CDS 50.0%
!! ATTTGGTGCGGGTGGGTACA+CGG + tig0030729:3794-3813 None:intergenic 55.0%
!! GGTTTGGATTTGGTGCGGGT+GGG + tig0030729:3801-3820 None:intergenic 55.0%
!! AGGTTTGGATTTGGTGCGGG+TGG + tig0030729:3802-3821 None:intergenic 55.0%
CAACACCCACAAGTCCTCAC+CGG - tig0030729:3839-3858 Msa1444450:three_prime_UTR 55.0%
CTACACTCGTCTCCCTCTCA+GGG - tig0030729:3896-3915 Msa1444450:three_prime_UTR 55.0%
GAAGGAGAAAGGATTGCCGG+CGG - tig0030729:4166-4185 Msa1444450:three_prime_UTR 55.0%
TCAAAACACCGCATCACCGC+CGG + tig0030729:4185-4204 None:intergenic 55.0%
!!! CGGTGATGCGGTGTTTTGAC+CGG - tig0030729:4186-4205 Msa1444450:three_prime_UTR 55.0%
!!! GGTGATGCGGTGTTTTGACC+GGG - tig0030729:4187-4206 Msa1444450:three_prime_UTR 55.0%
ATCTTCGCGAAAGCCGGAGA+CGG - tig0030729:4215-4234 Msa1444450:intron 55.0%
AGACGGAGGGAACGGAAGTA+TGG - tig0030729:4232-4251 Msa1444450:intron 55.0%
! CGGAAGTATGGCTTTCAGGC+GGG - tig0030729:4244-4263 Msa1444450:intron 55.0%
GTACCGTTTGGAGGTCCATC+CGG - tig0030729:4275-4294 Msa1444450:intron 55.0%
!! GGATTCATTTTCGGGCAGGG+AGG - tig0030729:4375-4394 Msa1444450:intron 55.0%
GGACAAGGCAGGATGCAGAT+TGG - tig0030729:4407-4426 Msa1444450:intron 55.0%
!! TGGTTGTGAAGGTGCCACCA+GGG - tig0030729:4447-4466 Msa1444450:intron 55.0%
GGTGATTAGGGAGGCTGGTA+GGG - tig0030729:4472-4491 Msa1444450:intron 55.0%
GATGGTGTATCCGGGACAGA+AGG - tig0030729:4511-4530 Msa1444450:three_prime_UTR 55.0%
!! CAGAAGGCGTTGTTGTTGCC+AGG - tig0030729:4527-4546 Msa1444450:exon 55.0%
!! AAGGCGTTGTTGTTGCCAGG+TGG - tig0030729:4530-4549 Msa1444450:exon 55.0%
TTGTTGCCAGGTGGAAGAGG+TGG - tig0030729:4539-4558 Msa1444450:CDS 55.0%
TGTTGCCAGGTGGAAGAGGT+GGG - tig0030729:4540-4559 Msa1444450:CDS 55.0%
! ACCTTTGGTGGGTCGGAAAC+CGG + tig0030729:5353-5372 None:intergenic 55.0%
GTTTCCGACCCACCAAAGGT+GGG - tig0030729:5353-5372 Msa1444450:intron 55.0%
! GATTAGTCGCCCACCTTTGG+TGG + tig0030729:5365-5384 None:intergenic 55.0%
! CCAGATTAGTCGCCCACCTT+TGG + tig0030729:5368-5387 None:intergenic 55.0%
CCAAAGGTGGGCGACTAATC+TGG - tig0030729:5365-5384 Msa1444450:intron 55.0%
! CTAATCTGGCTCGTGCGTAG+AGG - tig0030729:5379-5398 Msa1444450:intron 55.0%
TAGTGCTGCAAAGCCAGAGG+TGG - tig0030729:5670-5689 Msa1444450:intron 55.0%
!! ATGGTAGTGGCAGACCTTCC+AGG - tig0030729:5758-5777 Msa1444450:intron 55.0%
! CTTCTTGAAGGAGCACACCG+AGG - tig0030729:5782-5801 Msa1444450:intron 55.0%
!! GAAGGAGCACACCGAGGTTT+TGG - tig0030729:5788-5807 Msa1444450:intron 55.0%
! GTTTGGAGCGTAGTTGGGTC+TGG - tig0030729:7048-7067 Msa1444450:CDS 55.0%
GCACCTTGCATCATGCCATC+AGG + tig0030729:8615-8634 None:intergenic 55.0%
GTAGCGAGGGTTGCGTGTGT+TGG + tig0030729:3772-3791 None:intergenic 60.0%
CGGTTCCGGTGAGGACTTGT+GGG + tig0030729:3847-3866 None:intergenic 60.0%
AGGGAGACGAGTGTAGGTGG+TGG + tig0030729:3892-3911 None:intergenic 60.0%
GAGAGGGAGACGAGTGTAGG+TGG + tig0030729:3895-3914 None:intergenic 60.0%
CCTGAGAGGGAGACGAGTGT+AGG + tig0030729:3898-3917 None:intergenic 60.0%
CCTACACTCGTCTCCCTCTC+AGG - tig0030729:3895-3914 Msa1444450:three_prime_UTR 60.0%
AAGGATTGCCGGCGGTGATG+CGG - tig0030729:4174-4193 Msa1444450:three_prime_UTR 60.0%
AAAGCCGGAGACGGAGGGAA+CGG - tig0030729:4224-4243 Msa1444450:intron 60.0%
ACTTCCGTTCCCTCCGTCTC+CGG + tig0030729:4231-4250 None:intergenic 60.0%
CCACCGGATGGACCTCCAAA+CGG + tig0030729:4281-4300 None:intergenic 60.0%
CGTTTGGAGGTCCATCCGGT+GGG - tig0030729:4279-4298 Msa1444450:intron 60.0%
GTTTGGAGGTCCATCCGGTG+GGG - tig0030729:4280-4299 Msa1444450:intron 60.0%
GGGAGGGGTTCACATGGACA+AGG - tig0030729:4392-4411 Msa1444450:intron 60.0%
GGGGTTCACATGGACAAGGC+AGG - tig0030729:4396-4415 Msa1444450:intron 60.0%
!! GCAGATTGGTGCTAAGGGGG+AGG - tig0030729:4421-4440 Msa1444450:intron 60.0%
! TGGTGCTAAGGGGGAGGATG+TGG - tig0030729:4427-4446 Msa1444450:intron 60.0%
GGGGGAGGATGTGGTTGTGA+AGG - tig0030729:4436-4455 Msa1444450:intron 60.0%
!! GTGGTTGTGAAGGTGCCACC+AGG - tig0030729:4446-4465 Msa1444450:intron 60.0%
!! TGTGAAGGTGCCACCAGGGA+CGG - tig0030729:4451-4470 Msa1444450:intron 60.0%
TGCCACCAGGGACGGTGATT+AGG - tig0030729:4459-4478 Msa1444450:intron 60.0%
GCCACCAGGGACGGTGATTA+GGG - tig0030729:4460-4479 Msa1444450:intron 60.0%
TCCCTAATCACCGTCCCTGG+TGG + tig0030729:4464-4483 None:intergenic 60.0%
ACCAGGGACGGTGATTAGGG+AGG - tig0030729:4463-4482 Msa1444450:intron 60.0%
CGGTGATTAGGGAGGCTGGT+AGG - tig0030729:4471-4490 Msa1444450:intron 60.0%
GATTAGGGAGGCTGGTAGGG+AGG - tig0030729:4475-4494 Msa1444450:intron 60.0%
CAGGTGGAAGAGGTGGGAGA+GGG - tig0030729:4546-4565 Msa1444450:CDS 60.0%
! ACCGGTTTCCGACCCACCAA+AGG - tig0030729:5349-5368 Msa1444450:intron 60.0%
GGTTTCCGACCCACCAAAGG+TGG - tig0030729:5352-5371 Msa1444450:intron 60.0%
! GTGCGTAGAGGCATGCACAC+TGG - tig0030729:5391-5410 Msa1444450:intron 60.0%
GGGTGGGTACACGGTAGCGA+GGG + tig0030729:3785-3804 None:intergenic 65.0%
GCGGTTCCGGTGAGGACTTG+TGG + tig0030729:3848-3867 None:intergenic 65.0%
! AGTGTAGGTGGTGGCGTCGC+CGG + tig0030729:3883-3902 None:intergenic 65.0%
TTCGCGAAAGCCGGAGACGG+AGG - tig0030729:4218-4237 Msa1444450:intron 65.0%
TCGCGAAAGCCGGAGACGGA+GGG - tig0030729:4219-4238 Msa1444450:intron 65.0%
CCGTTTGGAGGTCCATCCGG+TGG - tig0030729:4278-4297 Msa1444450:intron 65.0%
GTCCATCCGGTGGGGATGGA+GGG - tig0030729:4288-4307 Msa1444450:intron 65.0%
ACCTCTCCCTCCATCCCCAC+CGG + tig0030729:4297-4316 None:intergenic 65.0%
GCCTCCCTAATCACCGTCCC+TGG + tig0030729:4467-4486 None:intergenic 65.0%
GGGACGGTGATTAGGGAGGC+TGG - tig0030729:4467-4486 Msa1444450:intron 65.0%
TAGGGAGGCTGGTAGGGAGG+AGG - tig0030729:4478-4497 Msa1444450:intron 65.0%
CCTCTCCCACCTCTTCCACC+TGG + tig0030729:4548-4567 None:intergenic 65.0%
CCAGGTGGAAGAGGTGGGAG+AGG - tig0030729:4545-4564 Msa1444450:CDS 65.0%
! GTCGCCCACCTTTGGTGGGT+CGG + tig0030729:5360-5379 None:intergenic 65.0%
CGGGTGGGTACACGGTAGCG+AGG + tig0030729:3786-3805 None:intergenic 70.0%
GAGGAGTGGCGGTTCCGGTG+AGG + tig0030729:3856-3875 None:intergenic 70.0%
GCGGAGAGGAGTGGCGGTTC+CGG + tig0030729:3861-3880 None:intergenic 70.0%
GAACCGCCACTCCTCTCCGC+CGG - tig0030729:3861-3880 Msa1444450:three_prime_UTR 70.0%
GGAGGTCCATCCGGTGGGGA+TGG - tig0030729:4284-4303 Msa1444450:intron 70.0%
GGTCCATCCGGTGGGGATGG+AGG - tig0030729:4287-4306 Msa1444450:intron 70.0%
CTCCCTCCATCCCCACCGGA+TGG + tig0030729:4293-4312 None:intergenic 70.0%
TCCGGTGGGGATGGAGGGAG+AGG - tig0030729:4293-4312 Msa1444450:intron 70.0%
GGTGGGGATGGAGGGAGAGG+TGG - tig0030729:4296-4315 Msa1444450:intron 70.0%
CGGGCAGGGAGGGGTTCACA+TGG - tig0030729:4386-4405 Msa1444450:intron 70.0%
TCGCCGGCGGAGAGGAGTGG+CGG + tig0030729:3867-3886 None:intergenic 75.0%
! GTAGGTGGTGGCGTCGCCGG+CGG + tig0030729:3880-3899 None:intergenic 75.0%
! GCGTCGCCGGCGGAGAGGAG+TGG + tig0030729:3870-3889 None:intergenic 80.0%
!! TGGTGGCGTCGCCGGCGGAG+AGG + tig0030729:3875-3894 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0030729 gene 3720 8987 3720 ID=Msa1444450;Name=Msa1444450
tig0030729 mRNA 3720 8987 3720 ID=Msa1444450-mRNA-1;Parent=Msa1444450;Name=Msa1444450-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.6|0.5|1|0.8|0.66|6|543|578
tig0030729 exon 3720 4209 3720 ID=Msa1444450-mRNA-1:exon:14511;Parent=Msa1444450-mRNA-1
tig0030729 exon 4481 4626 4481 ID=Msa1444450-mRNA-1:exon:14510;Parent=Msa1444450-mRNA-1
tig0030729 exon 4970 5151 4970 ID=Msa1444450-mRNA-1:exon:14509;Parent=Msa1444450-mRNA-1
tig0030729 exon 5869 6160 5869 ID=Msa1444450-mRNA-1:exon:14508;Parent=Msa1444450-mRNA-1
tig0030729 exon 6851 7110 6851 ID=Msa1444450-mRNA-1:exon:14507;Parent=Msa1444450-mRNA-1
tig0030729 exon 8078 8987 8078 ID=Msa1444450-mRNA-1:exon:14506;Parent=Msa1444450-mRNA-1
tig0030729 CDS 8078 8987 8078 ID=Msa1444450-mRNA-1:cds;Parent=Msa1444450-mRNA-1
tig0030729 CDS 6851 7110 6851 ID=Msa1444450-mRNA-1:cds;Parent=Msa1444450-mRNA-1
tig0030729 CDS 5869 6160 5869 ID=Msa1444450-mRNA-1:cds;Parent=Msa1444450-mRNA-1
tig0030729 CDS 4970 5151 4970 ID=Msa1444450-mRNA-1:cds;Parent=Msa1444450-mRNA-1
tig0030729 CDS 4534 4626 4534 ID=Msa1444450-mRNA-1:cds;Parent=Msa1444450-mRNA-1
tig0030729 three_prime_UTR 4481 4533 4481 ID=Msa1444450-mRNA-1:three_prime_utr;Parent=Msa1444450-mRNA-1
tig0030729 three_prime_UTR 3720 4209 3720 ID=Msa1444450-mRNA-1:three_prime_utr;Parent=Msa1444450-mRNA-1
Gene Sequence

>Msa1444450

ATGGTAACTTCAATCTCACCATGGTTCTCTCCCATTTCTATATCTTGTTCCAACACACGCAACCCTCGCTACCGTGTACCCACCCGCACCAAATCCAAACCTCCTCCAAATCCTAAACTCAACACCCACAAGTCCTCACCGGAACCGCCACTCCTCTCCGCCGGCGACGCCACCACCTACACTCGTCTCCCTCTCAGGGAAGACTTCTCTTCCACTTTCTCACCTTCCTCCTCTGAAATCAAACTCTCCGAATCAACACCAATTCACCAATTGCTCCACAAACTCGATAACGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAATCAATGGTAATTTTGAAGGAATTGGTGAGTCTGAAGATGATGAAGAATTGGGGTTTATGGATGAGGAGATTGAAGAAGGTGAAGAATTCTGGAGTGAGGAAACTGAAGAAGAAGAAGTGAAGGAGAAAGGATTGCCGGCGGTGATGCGGTGTTTTGACCGGGCGAAAATCTTCGCGAAAGCCGGAGACGGAGGGAACGGAAGTATGGCTTTCAGGCGGGAGAAATACGTACCGTTTGGAGGTCCATCCGGTGGGGATGGAGGGAGAGGTGGAAATGTGTACGTGGAAGTTGATAAAGCGATGAATTCGTTGTTACCGTTTAGGAATGGGATTCATTTTCGGGCAGGGAGGGGTTCACATGGACAAGGCAGGATGCAGATTGGTGCTAAGGGGGAGGATGTGGTTGTGAAGGTGCCACCAGGGACGGTGATTAGGGAGGCTGGTAGGGAGGAGGTGATTTTGGAGATGGTGTATCCGGGACAGAAGGCGTTGTTGTTGCCAGGTGGAAGAGGTGGGAGAGGGAATGCTGCTTTTAAGAGTGGGAGTAATAAAGCTCCGAAGATTGCTGAGAATGGTGAACAAGAACTTAAGCTGGTTGCAGATGTTGGTATAGTTGGTGCTCCAAATGCAGGGAAGAGTACACTTTTGAGTGTTATTAGTGCTGCAAAGCCAGAGGTGGCAAATTATCCCTTTACAACTTTGCTTCCCAATCTGGGCGTTGTTTCCTTTGACTACGATTCAACTATGGTAGTGGCAGACCTTCCAGGTCTTCTTGAAGGAGCACACCGAGGTTTTGGTTTAGGTCATGAATTTCTGCGACACACTGAAAGGTGTTCTGCACTGATACATGTCGTTGATGGTTCATCACCACAGGCAGATCTTGAGTTTGATGCAGTTCGTCTAGAACTGAAGCTATTTAATCCTGAACTTGCTGAGAAGCCATTTATAGTTGCTTATAACAAAATGGATCTTCCAGAAGCATACGAAAACTGGGAATCCTTCAAGGAAAAGTTGCAATCTCATGGGATCACGCCTTTTTGTATGAGCGCTGTCAAAAGGGAAGGTACTCATGAAGTTATATGCGCTGCTTATGAGCTTTGGCGTAAAAATAAAGAAGACAGGGAGGAATATGAAGGACTAGAATTATGCCTGAAATTTCCACCTCCATTCATGGATAGTCTCATGGAAACCGGTGAATCTTTTAACAGGTACGTTGATTCCGAGAAAAGATTCCAAAATGTCCTTGAGGCTTGTGGTGTATTTAAGTCTCTCGTGAAACGTGGCGTAAAGGAAGGCGACAAAGTGATTGTTGGAGAGATGGAGATGATATGGCATGACTCCTCAAACAAATCTGGTGCATCAAAGATGAAGATGTCCACAGATTCAATTAAATGGCCTGAATGGAAGTAA

Protein sequence

>Msa1444450

MVTSISPWFSPISISCSNTRNPRYRVPTRTKSKPPPNPKLNTHKSSPEPPLLSAGDATTYTRLPLREDFSSTFSPSSSEIKLSESTPIHQLLHKLDNDDDEEEEEEEEEINGNFEGIGESEDDEELGFMDEEIEEGEEFWSEETEEEEVKEKGLPAVMRCFDRAKIFAKAGDGGNGSMAFRREKYVPFGGPSGGDGGRGGNVYVEVDKAMNSLLPFRNGIHFRAGRGSHGQGRMQIGAKGEDVVVKVPPGTVIREAGREEVILEMVYPGQKALLLPGGRGGRGNAAFKSGSNKAPKIAENGEQELKLVADVGIVGAPNAGKSTLLSVISAAKPEVANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALIHVVDGSSPQADLEFDAVRLELKLFNPELAEKPFIVAYNKMDLPEAYENWESFKEKLQSHGITPFCMSAVKREGTHEVICAAYELWRKNKEDREEYEGLELCLKFPPPFMDSLMETGESFNRYVDSEKRFQNVLEACGVFKSLVKRGVKEGDKVIVGEMEMIWHDSSNKSGASKMKMSTDSIKWPEWK*