AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0922540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922540 MtrunA17_Chr6g0480631 98.597 499 7 0 1 499 1 499 0.0 1023
Msa0922540 MtrunA17_Chr3g0109901 74.560 511 115 4 1 499 1 508 0.0 786
Msa0922540 MtrunA17_Chr8g0375301 71.459 466 124 2 17 473 14 479 0.0 701
Msa0922540 MtrunA17_Chr5g0433931 69.682 409 116 2 99 499 1 409 0.0 601
Msa0922540 MtrunA17_Chr5g0433921 79.000 100 18 1 1 100 1 97 7.54e-50 166
Msa0922540 MtrunA17_Chr7g0222381 25.895 363 239 11 84 436 157 499 3.46e-20 93.6
Msa0922540 MtrunA17_Chr5g0432951 76.923 39 9 0 255 293 15 53 3.34e-15 71.2
Msa0922540 MtrunA17_Chr5g0432961 52.174 69 33 0 375 443 13 81 2.06e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922540 AT2G02010.1 77.778 495 101 2 1 495 1 486 0.0 813
Msa0922540 AT2G02010.2 77.778 495 101 2 1 495 53 538 0.0 813
Msa0922540 AT3G17760.2 78.528 489 98 3 14 499 10 494 0.0 797
Msa0922540 AT3G17760.1 78.528 489 98 3 14 499 10 494 0.0 797
Msa0922540 AT5G17330.1 76.228 509 104 4 1 499 1 502 0.0 795
Msa0922540 AT1G65960.2 76.647 501 108 4 1 499 1 494 0.0 785
Msa0922540 AT2G02000.1 74.899 494 115 2 1 494 1 485 0.0 785
Msa0922540 AT1G65960.1 76.359 368 82 3 134 499 1 365 0.0 573
Msa0922540 AT1G65960.3 76.359 368 82 3 134 499 1 365 0.0 573
Msa0922540 AT1G65960.4 76.359 368 82 3 134 499 1 365 0.0 573
Msa0922540 AT3G17720.1 74.074 162 39 1 94 255 27 185 1.09e-82 254
Msa0922540 AT1G27980.1 24.586 362 241 11 84 434 160 500 6.78e-17 84.0

Find 146 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTGTCTCCTTGTTCTTCT+TGG 0.118106 6_2:+61239837 None:intergenic
CATCTGTGTTGCAGCCATTT+TGG 0.165886 6_2:-61239914 Msa0922540:CDS
TTCCATTGTTGCTTTATCTA+TGG 0.221404 6_2:-61238594 Msa0922540:three_prime_UTR
CTGGTATTGGTTGGGTTGTT+TGG 0.223066 6_2:-61239675 Msa0922540:CDS
TTCTCTACCCTGATCTTCTA+TGG 0.227683 6_2:-61239762 Msa0922540:CDS
TTCATTCATTCATATAAATA+TGG 0.237410 6_2:+61238539 None:intergenic
CTCAATACTACCAATTTATA+CGG 0.248455 6_2:-61239396 Msa0922540:CDS
AGTTGAAGAAATCACCATTT+TGG 0.255929 6_2:+61242153 None:intergenic
ATCTGATATGCTGCATCTTT+TGG 0.270173 6_2:+61241927 None:intergenic
ACGTGGGTAAATAGTCATTT+TGG 0.292172 6_2:+61242335 None:intergenic
AACCGCAACATGAGCATCTT+TGG 0.297910 6_2:+61238815 None:intergenic
CTGTCCTCCGAGTGGTGATT+AGG 0.312016 6_2:-61238929 Msa0922540:CDS
CGAAGCCAAGCCGTATAAAT+TGG 0.316347 6_2:+61239386 None:intergenic
TGTGCAAGTCATGGGATAAA+AGG 0.332953 6_2:-61242824 Msa0922540:five_prime_UTR
GATAAGCCTAACATAGTTAC+TGG 0.334663 6_2:-61240904 Msa0922540:CDS
TCCTGTCACAACTGAGCTTC+AGG 0.336960 6_2:-61241769 Msa0922540:intron
TTCTAGATACGTGCGTGAAC+AGG 0.356943 6_2:-61242083 Msa0922540:CDS
AGAGTCAAGCTGAGATTCTT+AGG 0.358334 6_2:-61238749 Msa0922540:CDS
CGGAAATCCCATAGAAGATC+AGG 0.359620 6_2:+61239754 None:intergenic
GGTCTTGTTTACCCTGGTAT+TGG 0.363471 6_2:-61239688 Msa0922540:CDS
TAACAAGAACTATGTTGATA+TGG 0.366188 6_2:-61241799 Msa0922540:CDS
CTCGCAGCATCCACATGAAT+TGG 0.372368 6_2:+61239805 None:intergenic
GAGGCATAAAGCTGACTTGC+CGG 0.372412 6_2:-61239653 Msa0922540:CDS
AGTCAGCGTTGAACCCAAAA+TGG 0.376738 6_2:+61239900 None:intergenic
AATGATGAGTTGATGTTAGA+TGG 0.378531 6_2:-61241900 Msa0922540:CDS
GTTTGTGGGTGAAGTAGATT+TGG 0.381006 6_2:+61242790 None:intergenic
CATCTATTCAATGCTCCTAT+TGG 0.381425 6_2:-61241045 Msa0922540:CDS
TGGCTTCATTTGTTACTACT+TGG 0.383718 6_2:-61241860 Msa0922540:CDS
GCAGTTTCCTCTTCACCAAT+AGG 0.385794 6_2:+61241030 None:intergenic
CAGAACTCATCCAACCAAAA+TGG 0.395608 6_2:-61242167 Msa0922540:exon
ACCATTTCAACAGCTTTCAA+TGG 0.408300 6_2:+61239949 None:intergenic
AATATGCTACACAGGTTTGT+TGG 0.409355 6_2:-61240044 Msa0922540:intron
ATATGCTACACAGGTTTGTT+GGG 0.411704 6_2:-61240043 Msa0922540:intron
CAAGCTACATTATGTGTCAT+AGG 0.414559 6_2:+61242506 None:intergenic
TACTACCAATTTATACGGCT+TGG 0.415144 6_2:-61239391 Msa0922540:CDS
CGTGTGATCACTTATTCTTA+AGG 0.417210 6_2:-61242315 Msa0922540:five_prime_UTR
TGTCCTCCGAGTGGTGATTA+GGG 0.420453 6_2:-61238928 Msa0922540:CDS
TTGTTTACCCTGGTATTGGT+TGG 0.425703 6_2:-61239684 Msa0922540:CDS
AACGCTGACTGGAGAGTTTG+AGG 0.427297 6_2:-61239887 Msa0922540:CDS
GTCTCTACAACTATTTATAG+AGG 0.430459 6_2:-61242654 Msa0922540:five_prime_UTR
AAAATACGGGTGGATAGTTC+CGG 0.431504 6_2:-61238985 Msa0922540:CDS
TGTTTACCCTGGTATTGGTT+GGG 0.431991 6_2:-61239683 Msa0922540:CDS
GCAGACCATTTGAGAAAATA+CGG 0.437901 6_2:-61238999 Msa0922540:CDS
GAGAAATTCAATGTGAAAGT+TGG 0.439670 6_2:+61239589 None:intergenic
AAGGAAGGAATTGAGAAAAC+AGG 0.440850 6_2:-61239110 Msa0922540:CDS
AAGCTGAGATTCTTAGGTAC+TGG 0.444819 6_2:-61238743 Msa0922540:CDS
ATTTATACGGCTTGGCTTCG+AGG 0.445868 6_2:-61239383 Msa0922540:intron
TTCATTTGTTACTACTTGGA+TGG 0.447228 6_2:-61241856 Msa0922540:CDS
ATGATGTTGATCATGTTTCA+AGG 0.449196 6_2:+61242764 None:intergenic
GTACTTTGAGGTTGAGCTAA+AGG 0.449977 6_2:-61240007 Msa0922540:CDS
TGGAAAACCAAGGCTTAACT+TGG 0.451331 6_2:-61241880 Msa0922540:CDS
TTAGCTCCAGTAACTATGTT+AGG 0.451511 6_2:+61240898 None:intergenic
TACTGGAAGAAGCTTGTTGA+TGG 0.452812 6_2:-61238726 Msa0922540:CDS
TCTCTACCCTGATCTTCTAT+GGG 0.463816 6_2:-61239761 Msa0922540:CDS
ATGGGATTTCCGTTTGCCAT+TGG 0.465556 6_2:-61239743 Msa0922540:CDS
ACTATGTTAGGCTTATCATA+AGG 0.466884 6_2:+61240910 None:intergenic
CTTGTTGATGGCAAGAGAGT+TGG 0.470062 6_2:-61238714 Msa0922540:CDS
GTATTGGTTGGGTTGTTTGG+AGG 0.473665 6_2:-61239672 Msa0922540:CDS
AATGAAGCCAAGTTAAGCCT+TGG 0.475959 6_2:+61241873 None:intergenic
CATAATTGCTAGGTTTATTG+AGG 0.476798 6_2:+61242564 None:intergenic
AAAATTTGCCAGGTACTTTG+AGG 0.476874 6_2:-61240019 Msa0922540:CDS
GCATATATTTGATGTGTGTA+AGG 0.480662 6_2:-61238621 Msa0922540:three_prime_UTR
GCAGTAGGTGTTGGAACTGT+AGG 0.480901 6_2:-61241009 Msa0922540:CDS
TCTTTGGAATTGATAGAACT+TGG 0.481455 6_2:+61238831 None:intergenic
CAAGAGAGTTGGAGCATGCT+AGG 0.485182 6_2:-61238703 Msa0922540:exon
CAAACAACCCAACCAATACC+AGG 0.491052 6_2:+61239676 None:intergenic
TCCATTGAAAGCTGTTGAAA+TGG 0.494508 6_2:-61239950 Msa0922540:CDS
AAAATTGTCTCCAAGGACAT+AGG 0.500052 6_2:-61239080 Msa0922540:CDS
CGAATGTGCAACGCTATGTT+GGG 0.500074 6_2:+61242606 None:intergenic
ATGTTTCAAGGATTGTTTGT+GGG 0.500425 6_2:+61242776 None:intergenic
GAAATAACATGTGCAAGTCA+TGG 0.510606 6_2:-61242833 None:intergenic
TGCGTCCGCTGGCATTGTGT+AGG 0.512284 6_2:+61238962 None:intergenic
AAAGCCACTCACAACAATCA+AGG 0.512318 6_2:+61238652 None:intergenic
ACGAATGTGCAACGCTATGT+TGG 0.513816 6_2:+61242605 None:intergenic
AAGGTTTAAAATTGTCTCCA+AGG 0.518110 6_2:-61239087 Msa0922540:CDS
TCCGCTGGCATTGTGTAGGC+CGG 0.520444 6_2:+61238966 None:intergenic
CAATGCTCCTATTGGTGAAG+AGG 0.522077 6_2:-61241037 Msa0922540:CDS
ACTGATCTTTGTGAAGATAG+AGG 0.525765 6_2:+61242253 None:intergenic
CTCCATAGATAAAGCAACAA+TGG 0.526759 6_2:+61238592 None:intergenic
AAGTGGCACACCTATGTCCT+TGG 0.528819 6_2:+61239070 None:intergenic
GTCATCAGAGGCAATAATGC+TGG 0.532016 6_2:-61240986 Msa0922540:CDS
TGAGTGTGATAAGCTTATCA+TGG 0.535116 6_2:-61241829 Msa0922540:CDS
GCTGCTGTCTTTCAGAGAGA+AGG 0.536335 6_2:+61239043 None:intergenic
AGAAGATCAGGGTAGAGAAA+CGG 0.536404 6_2:+61239766 None:intergenic
GAGGAAACTGCAGTAGGTGT+TGG 0.536508 6_2:-61241018 Msa0922540:CDS
CATGTTTCAAGGATTGTTTG+TGG 0.542523 6_2:+61242775 None:intergenic
CAGTAGGTGTTGGAACTGTA+GGG 0.543728 6_2:-61241008 Msa0922540:CDS
ACCTGAAGCTCAGTTGTGAC+AGG 0.544295 6_2:+61241768 None:intergenic
GGAAGATTTCAGCTGCAGCT+TGG 0.547015 6_2:-61238907 Msa0922540:CDS
ACCAAGAAGAACAAGGAGAC+AGG 0.547623 6_2:-61239838 Msa0922540:CDS
AAATGTGATGGAAAATTGCT+TGG 0.550366 6_2:-61239150 Msa0922540:CDS
AATGTTAGCGGTCACAAGTA+CGG 0.552630 6_2:-61239709 Msa0922540:CDS
AAATAACATGTGCAAGTCAT+GGG 0.553359 6_2:-61242832 None:intergenic
CACAGAGGATTACTATGTGA+TGG 0.560082 6_2:-61239974 Msa0922540:CDS
TAGCTCAACCTCAAAGTACC+TGG 0.560216 6_2:+61240011 None:intergenic
AGAAGAACAAGGAGACAGGA+TGG 0.560336 6_2:-61239834 Msa0922540:CDS
GTTCATAGATGCATGGACAT+TGG 0.563250 6_2:+61238561 None:intergenic
AAACCCTTGATTGTTGTGAG+TGG 0.565159 6_2:-61238656 Msa0922540:three_prime_UTR
GTGAAAAGTATCAATGTTAG+CGG 0.565895 6_2:-61239721 Msa0922540:CDS
AGTTGTATGACATAATTGCT+AGG 0.566470 6_2:+61242554 None:intergenic
TTCACATTGAATTTCTCCAA+AGG 0.571801 6_2:-61239583 Msa0922540:intron
TTCCAAAGATGCTCATGTTG+CGG 0.577794 6_2:-61238817 Msa0922540:CDS
TTCATCATAAATGTATGCAA+AGG 0.581572 6_2:+61238499 None:intergenic
CAAAATGGCTGCAACACAGA+TGG 0.582491 6_2:+61239915 None:intergenic
TCAGAGGCAATAATGCTGGC+TGG 0.584457 6_2:-61240982 Msa0922540:CDS
GTTGCACATTCGTCAAGAAG+TGG 0.586479 6_2:-61242595 Msa0922540:five_prime_UTR
GGCGAACACAAGAATTCTGA+AGG 0.590261 6_2:-61239129 Msa0922540:CDS
AACACAAGAATTCTGAAGGA+AGG 0.596220 6_2:-61239125 Msa0922540:CDS
AAATATGGTTCATAGATGCA+TGG 0.597106 6_2:+61238554 None:intergenic
AGTTACTGGAGCTAATGTGC+AGG 0.605359 6_2:-61240890 Msa0922540:intron
ATGATAAGCTTATCACACTC+AGG 0.609818 6_2:+61241831 None:intergenic
TCAACTGTCACACATCCAGA+TGG 0.610258 6_2:-61242136 Msa0922540:CDS
AAGCCACTCACAACAATCAA+GGG 0.612864 6_2:+61238653 None:intergenic
GATCACTTATTCTTAAGGAG+TGG 0.615220 6_2:-61242310 Msa0922540:five_prime_UTR
AAGGAATTGAGAAAACAGGA+AGG 0.618569 6_2:-61239106 Msa0922540:CDS
TTGCACATTCGTCAAGAAGT+GGG 0.620054 6_2:-61242594 Msa0922540:five_prime_UTR
TCTTTCATAAAATCAAGTAG+TGG 0.621670 6_2:-61242277 Msa0922540:five_prime_UTR
GAAGAACAAGGAGACAGGAT+GGG 0.623633 6_2:-61239833 Msa0922540:CDS
GGAAATCCCATAGAAGATCA+GGG 0.625993 6_2:+61239755 None:intergenic
CAGACCATTTGAGAAAATAC+GGG 0.628218 6_2:-61238998 Msa0922540:CDS
CATGTGGATGCTGCGAGCGG+TGG 0.629625 6_2:-61239799 Msa0922540:CDS
ATGGGATACTCCAATTCATG+TGG 0.632127 6_2:-61239815 Msa0922540:CDS
TTATAGAGGACTAATAATGT+CGG 0.635631 6_2:-61242640 Msa0922540:five_prime_UTR
AAGTACGGTCTTGTTTACCC+TGG 0.636562 6_2:-61239694 Msa0922540:CDS
ACCATTTGAGAAAATACGGG+TGG 0.649671 6_2:-61238995 Msa0922540:CDS
GGTGAAGAGGAAACTGCAGT+AGG 0.652830 6_2:-61241024 Msa0922540:CDS
TTCAGAGAGAAGGCTACAAG+TGG 0.654016 6_2:+61239053 None:intergenic
AAAACTGTTGTCGATCGATG+AGG 0.657169 6_2:+61242463 None:intergenic
AATCTTCCCTAATCACCACT+CGG 0.661532 6_2:+61238922 None:intergenic
TAAGAATAAGTGATCACACG+TGG 0.669996 6_2:+61242318 None:intergenic
TGGAACTGTAGGGTCATCAG+AGG 0.671933 6_2:-61240998 Msa0922540:CDS
GTAACAGCGAGGTGTAGAGT+CGG 0.678953 6_2:-61242361 Msa0922540:five_prime_UTR
GCTTCTTACCAAGAAGAACA+AGG 0.684448 6_2:-61239845 Msa0922540:CDS
CAGACTAAGAGAAAATCAGA+AGG 0.687264 6_2:-61240937 Msa0922540:CDS
GTGCTATTATATTCACACAC+CGG 0.687463 6_2:+61241067 None:intergenic
TGATGTTAGATGGAAAACCA+AGG 0.691803 6_2:-61241890 Msa0922540:CDS
ATTCATGTGGATGCTGCGAG+CGG 0.696037 6_2:-61239802 Msa0922540:CDS
TCCGGCCTACACAATGCCAG+CGG 0.698888 6_2:-61238967 Msa0922540:CDS
AAACAACCCAACCAATACCA+GGG 0.700278 6_2:+61239677 None:intergenic
ACACATCGCTGTCCTCCGAG+TGG 0.704085 6_2:-61238937 Msa0922540:CDS
CAAAGATCATTGTAACAGCG+AGG 0.709268 6_2:-61242372 Msa0922540:five_prime_UTR
AAGAATAAGTGATCACACGT+GGG 0.710986 6_2:+61242319 None:intergenic
TATCGCGAGTGAGACAAGTG+AGG 0.713496 6_2:-61238793 Msa0922540:CDS
CTTCCCTAATCACCACTCGG+AGG 0.723923 6_2:+61238925 None:intergenic
TCATAAACTAATCCACACTG+AGG 0.756505 6_2:-61242745 Msa0922540:five_prime_UTR
AAAGGAAGTGAAACTCACAG+AGG 0.773932 6_2:-61239989 Msa0922540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATTCATTCATATAAATA+TGG + chr6_2:61242766-61242785 None:intergenic 15.0%
!!! AATGTTTTAGCAGTAAATTT+TGG - chr6_2:61238626-61238645 Msa0922540:three_prime_UTR 20.0%
!!! GATTTTATGAAAGAAAAAAG+AGG + chr6_2:61239019-61239038 None:intergenic 20.0%
!!! AGTGTTTTTTTAAGGAAAAA+AGG + chr6_2:61239260-61239279 None:intergenic 20.0%
!!! ATATGTTTATGTGTTGATAT+AGG - chr6_2:61239328-61239347 Msa0922540:intron 20.0%
!!! TTGATCAAGATTTTGAATTA+TGG - chr6_2:61239579-61239598 Msa0922540:intron 20.0%
!! AATTATTATTGCACAGTAAA+AGG - chr6_2:61239841-61239860 Msa0922540:CDS 20.0%
!! ATTATTATTGCACAGTAAAA+GGG - chr6_2:61239842-61239861 Msa0922540:CDS 20.0%
!!! GGGAAAATATCATTTTTTAA+TGG - chr6_2:61239987-61240006 Msa0922540:CDS 20.0%
!!! TTGTAAGTATCAAATTTTGA+GGG + chr6_2:61240020-61240039 None:intergenic 20.0%
!!! TTTTTTAGATCTTTTGTGTT+TGG - chr6_2:61240044-61240063 Msa0922540:intron 20.0%
!! TAACAAATGTTGAAAATATG+AGG - chr6_2:61240837-61240856 Msa0922540:intron 20.0%
!! TCAAGTAAATATATTACCTT+TGG + chr6_2:61241738-61241757 None:intergenic 20.0%
! CTACTGTTTGAAGAAAAATT+TGG + chr6_2:61238600-61238619 None:intergenic 25.0%
! TTATAGAGGACTAATAATGT+CGG - chr6_2:61238662-61238681 Msa0922540:three_prime_UTR 25.0%
! TCTTTCATAAAATCAAGTAG+TGG - chr6_2:61239025-61239044 Msa0922540:CDS 25.0%
! TAACAAGAACTATGTTGATA+TGG - chr6_2:61239503-61239522 Msa0922540:intron 25.0%
!!! GATCAAGACTTTTAAAGAAA+AGG + chr6_2:61239755-61239774 None:intergenic 25.0%
! CATAAGTGTACTTATTTATC+TGG + chr6_2:61239800-61239819 None:intergenic 25.0%
! CAGATAAATAAGTACACTTA+TGG - chr6_2:61239798-61239817 Msa0922540:CDS 25.0%
!!! AAGTTGCTTTTTTGAAGAAA+GGG - chr6_2:61239967-61239986 Msa0922540:CDS 25.0%
!! GTTGTAAGTATCAAATTTTG+AGG + chr6_2:61240021-61240040 None:intergenic 25.0%
! CTGTTACAATTGAAATATCT+TGG - chr6_2:61240117-61240136 Msa0922540:intron 25.0%
!! TACATCTAAAATCATGTTGA+GGG + chr6_2:61240562-61240581 None:intergenic 25.0%
!!! AGCACAAAATTGCATTTTTT+TGG + chr6_2:61240591-61240610 None:intergenic 25.0%
! GATAAAACATATTGTTCGTT+CGG - chr6_2:61240630-61240649 Msa0922540:intron 25.0%
! TATATTACATAATACCAGAG+AGG + chr6_2:61240696-61240715 None:intergenic 25.0%
! GTATTATGTAATATAGTAGC+AGG - chr6_2:61240701-61240720 Msa0922540:intron 25.0%
! TATATGTCAAAATGAAGATG+AGG + chr6_2:61240819-61240838 None:intergenic 25.0%
!! ATTTTGTATTCTACCATACA+AGG + chr6_2:61240930-61240949 None:intergenic 25.0%
!! TCATGACTTGTAACTTATAT+TGG - chr6_2:61241119-61241138 Msa0922540:intron 25.0%
!! GTTTTTCACATCAATTATCT+TGG - chr6_2:61241680-61241699 Msa0922540:intron 25.0%
! CAATGTATGACAAAATTCAA+AGG + chr6_2:61241767-61241786 None:intergenic 25.0%
!! CTTTGAATTTTGTCATACAT+TGG - chr6_2:61241765-61241784 Msa0922540:intron 25.0%
! GAAATACAAAGCAACATTAA+GGG + chr6_2:61241859-61241878 None:intergenic 25.0%
! CTCAATACTACCAATTTATA+CGG - chr6_2:61241906-61241925 Msa0922540:CDS 25.0%
!!! TGTTATTTTTCTTGCTCTAA+GGG - chr6_2:61242123-61242142 Msa0922540:CDS 25.0%
! TTCATCATAAATGTATGCAA+AGG + chr6_2:61242806-61242825 None:intergenic 25.0%
ATGTTTCAAGGATTGTTTGT+GGG + chr6_2:61238529-61238548 None:intergenic 30.0%
ATGATGTTGATCATGTTTCA+AGG + chr6_2:61238541-61238560 None:intergenic 30.0%
CTGTTTGAAGAAAAATTTGG+TGG + chr6_2:61238597-61238616 None:intergenic 30.0%
GTCTCTACAACTATTTATAG+AGG - chr6_2:61238648-61238667 Msa0922540:three_prime_UTR 30.0%
CATAATTGCTAGGTTTATTG+AGG + chr6_2:61238741-61238760 None:intergenic 30.0%
AGTTGTATGACATAATTGCT+AGG + chr6_2:61238751-61238770 None:intergenic 30.0%
! AGTTGAAGAAATCACCATTT+TGG + chr6_2:61239152-61239171 None:intergenic 30.0%
!!! GTGTGTGAAGTGTTTTTTTA+AGG + chr6_2:61239268-61239287 None:intergenic 30.0%
!!! ACACACACTTAGTTTTTTGT+TGG - chr6_2:61239282-61239301 Msa0922540:intron 30.0%
! TCTTTTGGTATAGAATTCTC+TGG + chr6_2:61239363-61239382 None:intergenic 30.0%
!! AATGATGAGTTGATGTTAGA+TGG - chr6_2:61239402-61239421 Msa0922540:CDS 30.0%
! TTCATTTGTTACTACTTGGA+TGG - chr6_2:61239446-61239465 Msa0922540:intron 30.0%
AATAAGACTAAGTGCATGTT+TGG - chr6_2:61239647-61239666 Msa0922540:CDS 30.0%
! ATTTTGCAAAAGCTACATCA+GGG + chr6_2:61239708-61239727 None:intergenic 30.0%
! ATGTAGCTTTTGCAAAATCA+GGG - chr6_2:61239710-61239729 Msa0922540:CDS 30.0%
!! TTGATCTTTGAAGCTTTGTT+TGG - chr6_2:61239769-61239788 Msa0922540:CDS 30.0%
!!! CAAGTTGCTTTTTTGAAGAA+AGG - chr6_2:61239966-61239985 Msa0922540:CDS 30.0%
! TTTAGATCTTTTGTGTTTGG+CGG - chr6_2:61240047-61240066 Msa0922540:intron 30.0%
!! TCAGTACTTTCAAGTTTCAA+TGG + chr6_2:61240178-61240197 None:intergenic 30.0%
TTTGTTCAATTATGCAGAAC+CGG - chr6_2:61240216-61240235 Msa0922540:intron 30.0%
!!! GTTTAGCTTTTAAAAGGAAG+TGG - chr6_2:61240342-61240361 Msa0922540:intron 30.0%
ACTATGTTAGGCTTATCATA+AGG + chr6_2:61240395-61240414 None:intergenic 30.0%
!! GTAGTTCTGTATTTTCTTAG+AGG - chr6_2:61240523-61240542 Msa0922540:intron 30.0%
! GTACATCTAAAATCATGTTG+AGG + chr6_2:61240563-61240582 None:intergenic 30.0%
AAACTGTTTGAGAGAACTTA+CGG - chr6_2:61241057-61241076 Msa0922540:CDS 30.0%
! ACATTGATACTTTTCACCAA+TGG + chr6_2:61241578-61241597 None:intergenic 30.0%
!! GTGAAAAGTATCAATGTTAG+CGG - chr6_2:61241581-61241600 Msa0922540:intron 30.0%
ATGTGAAAAACAAGATCATC+CGG + chr6_2:61241671-61241690 None:intergenic 30.0%
GAGAAATTCAATGTGAAAGT+TGG + chr6_2:61241716-61241735 None:intergenic 30.0%
TTCACATTGAATTTCTCCAA+AGG - chr6_2:61241719-61241738 Msa0922540:intron 30.0%
GGAAATACAAAGCAACATTA+AGG + chr6_2:61241860-61241879 None:intergenic 30.0%
!!! CTGTTATTTTTCTTGCTCTA+AGG - chr6_2:61242122-61242141 Msa0922540:CDS 30.0%
! AAATGTGATGGAAAATTGCT+TGG - chr6_2:61242152-61242171 Msa0922540:exon 30.0%
! AAGGTTTAAAATTGTCTCCA+AGG - chr6_2:61242215-61242234 Msa0922540:intron 30.0%
AGAAAAAGTTGTGAATCTCT+TGG - chr6_2:61242440-61242459 Msa0922540:five_prime_UTR 30.0%
!! TCTTTGGAATTGATAGAACT+TGG + chr6_2:61242474-61242493 None:intergenic 30.0%
GCATATATTTGATGTGTGTA+AGG - chr6_2:61242681-61242700 Msa0922540:five_prime_UTR 30.0%
!! TTCCATTGTTGCTTTATCTA+TGG - chr6_2:61242708-61242727 Msa0922540:five_prime_UTR 30.0%
AAATATGGTTCATAGATGCA+TGG + chr6_2:61242751-61242770 None:intergenic 30.0%
CATGTTTCAAGGATTGTTTG+TGG + chr6_2:61238530-61238549 None:intergenic 35.0%
TCATAAACTAATCCACACTG+AGG - chr6_2:61238557-61238576 Msa0922540:three_prime_UTR 35.0%
CAAGCTACATTATGTGTCAT+AGG + chr6_2:61238799-61238818 None:intergenic 35.0%
! GATGAGGTGACAAATGTTTT+AGG + chr6_2:61238826-61238845 None:intergenic 35.0%
! ACGTGGGTAAATAGTCATTT+TGG + chr6_2:61238970-61238989 None:intergenic 35.0%
AAGAATAAGTGATCACACGT+GGG + chr6_2:61238986-61239005 None:intergenic 35.0%
TAAGAATAAGTGATCACACG+TGG + chr6_2:61238987-61239006 None:intergenic 35.0%
CGTGTGATCACTTATTCTTA+AGG - chr6_2:61238987-61239006 Msa0922540:CDS 35.0%
GATCACTTATTCTTAAGGAG+TGG - chr6_2:61238992-61239011 Msa0922540:CDS 35.0%
ACTGATCTTTGTGAAGATAG+AGG + chr6_2:61239052-61239071 None:intergenic 35.0%
!! GAAGAAATCACCATTTTGGT+TGG + chr6_2:61239148-61239167 None:intergenic 35.0%
GGAAAAAAGGACACTTACTT+AGG + chr6_2:61239247-61239266 None:intergenic 35.0%
! ATCTGATATGCTGCATCTTT+TGG + chr6_2:61239378-61239397 None:intergenic 35.0%
TGATGTTAGATGGAAAACCA+AGG - chr6_2:61239412-61239431 Msa0922540:CDS 35.0%
! TGGCTTCATTTGTTACTACT+TGG - chr6_2:61239442-61239461 Msa0922540:intron 35.0%
ATGATAAGCTTATCACACTC+AGG + chr6_2:61239474-61239493 None:intergenic 35.0%
TGAGTGTGATAAGCTTATCA+TGG - chr6_2:61239473-61239492 Msa0922540:intron 35.0%
CAGATAGGATCTTGATATTG+CGG - chr6_2:61239611-61239630 Msa0922540:CDS 35.0%
! GATTTTGCAAAAGCTACATC+AGG + chr6_2:61239709-61239728 None:intergenic 35.0%
! GATGTAGCTTTTGCAAAATC+AGG - chr6_2:61239709-61239728 Msa0922540:CDS 35.0%
AGCAGAGAATGATAGTTTCA+GGG + chr6_2:61239946-61239965 None:intergenic 35.0%
! GTGCTATTATATTCACACAC+CGG + chr6_2:61240238-61240257 None:intergenic 35.0%
CATCTATTCAATGCTCCTAT+TGG - chr6_2:61240257-61240276 Msa0922540:intron 35.0%
!!! TGGCTGGTTTAGCTTTTAAA+AGG - chr6_2:61240336-61240355 Msa0922540:intron 35.0%
CAGACTAAGAGAAAATCAGA+AGG - chr6_2:61240365-61240384 Msa0922540:intron 35.0%
GATAAGCCTAACATAGTTAC+TGG - chr6_2:61240398-61240417 Msa0922540:intron 35.0%
TTAGCTCCAGTAACTATGTT+AGG + chr6_2:61240407-61240426 None:intergenic 35.0%
! GTTCTGTATTTTCTTAGAGG+CGG - chr6_2:61240526-61240545 Msa0922540:intron 35.0%
! TCTAAAATCATGTTGAGGGT+GGG + chr6_2:61240558-61240577 None:intergenic 35.0%
! ATCTAAAATCATGTTGAGGG+TGG + chr6_2:61240559-61240578 None:intergenic 35.0%
! GCTGTAAAGAAGTACATTTC+TGG - chr6_2:61240608-61240627 Msa0922540:intron 35.0%
TGTGTGGTTAAGAAATGTGT+TGG - chr6_2:61240662-61240681 Msa0922540:intron 35.0%
GATGAGGCAATAAATTTAGC+AGG + chr6_2:61240803-61240822 None:intergenic 35.0%
GCTGTTTAAATATGCTACAC+AGG - chr6_2:61241250-61241269 Msa0922540:intron 35.0%
AATATGCTACACAGGTTTGT+TGG - chr6_2:61241258-61241277 Msa0922540:intron 35.0%
! ATATGCTACACAGGTTTGTT+GGG - chr6_2:61241259-61241278 Msa0922540:intron 35.0%
TTTGTTGGGAAAAATTTGCC+AGG - chr6_2:61241273-61241292 Msa0922540:intron 35.0%
AAAATTTGCCAGGTACTTTG+AGG - chr6_2:61241283-61241302 Msa0922540:intron 35.0%
TCCATTGAAAGCTGTTGAAA+TGG - chr6_2:61241352-61241371 Msa0922540:intron 35.0%
ACCATTTCAACAGCTTTCAA+TGG + chr6_2:61241356-61241375 None:intergenic 35.0%
! TACTTTTCACCAATGGCAAA+CGG + chr6_2:61241571-61241590 None:intergenic 35.0%
TACTACCAATTTATACGGCT+TGG - chr6_2:61241911-61241930 Msa0922540:CDS 35.0%
TCAAGCACATACTTGAGATT+TGG + chr6_2:61241967-61241986 None:intergenic 35.0%
TAAGGGCTACAAAAATGTGA+TGG - chr6_2:61242140-61242159 Msa0922540:CDS 35.0%
! AACACAAGAATTCTGAAGGA+AGG - chr6_2:61242177-61242196 Msa0922540:five_prime_UTR 35.0%
AAGGAAGGAATTGAGAAAAC+AGG - chr6_2:61242192-61242211 Msa0922540:intron 35.0%
AAGGAATTGAGAAAACAGGA+AGG - chr6_2:61242196-61242215 Msa0922540:intron 35.0%
AAAATTGTCTCCAAGGACAT+AGG - chr6_2:61242222-61242241 Msa0922540:intron 35.0%
GCAGACCATTTGAGAAAATA+CGG - chr6_2:61242303-61242322 Msa0922540:five_prime_UTR 35.0%
CAGACCATTTGAGAAAATAC+GGG - chr6_2:61242304-61242323 Msa0922540:five_prime_UTR 35.0%
CTCCATAGATAAAGCAACAA+TGG + chr6_2:61242713-61242732 None:intergenic 35.0%
GTTTGTGGGTGAAGTAGATT+TGG + chr6_2:61238515-61238534 None:intergenic 40.0%
!!! GATCTTTTTTGTCCTCAGTG+TGG + chr6_2:61238572-61238591 None:intergenic 40.0%
TTGCACATTCGTCAAGAAGT+GGG - chr6_2:61238708-61238727 Msa0922540:CDS 40.0%
AAAACTGTTGTCGATCGATG+AGG + chr6_2:61238842-61238861 None:intergenic 40.0%
CAAAGATCATTGTAACAGCG+AGG - chr6_2:61238930-61238949 Msa0922540:CDS 40.0%
CAGAACTCATCCAACCAAAA+TGG - chr6_2:61239135-61239154 Msa0922540:CDS 40.0%
! ATGTTCTCGTTTTGTCCATC+TGG + chr6_2:61239184-61239203 None:intergenic 40.0%
TGGAAAACCAAGGCTTAACT+TGG - chr6_2:61239422-61239441 Msa0922540:intron 40.0%
AATGAAGCCAAGTTAAGCCT+TGG + chr6_2:61239432-61239451 None:intergenic 40.0%
TAAAGAAAAGGCCTGCATCA+GGG + chr6_2:61239743-61239762 None:intergenic 40.0%
TTAAAGAAAAGGCCTGCATC+AGG + chr6_2:61239744-61239763 None:intergenic 40.0%
GAGCAGAGAATGATAGTTTC+AGG + chr6_2:61239947-61239966 None:intergenic 40.0%
TTGGCGGTTGGATGAAAATT+TGG - chr6_2:61240063-61240082 Msa0922540:intron 40.0%
CTAAAATCATGTTGAGGGTG+GGG + chr6_2:61240557-61240576 None:intergenic 40.0%
TGTTGGAGAAAATTCCTCTC+TGG - chr6_2:61240679-61240698 Msa0922540:intron 40.0%
AGAGGAAACAAAGCATGAGA+CGG + chr6_2:61240865-61240884 None:intergenic 40.0%
! CGCCTTTCTGCTTTAGTTTA+GGG - chr6_2:61240986-61241005 Msa0922540:CDS 40.0%
CACCCTAAACTAAAGCAGAA+AGG + chr6_2:61240991-61241010 None:intergenic 40.0%
CTCTCAAACAGTTTCACAAG+TGG + chr6_2:61241051-61241070 None:intergenic 40.0%
GAGCTATCATAGAGAGCTTA+TGG + chr6_2:61241101-61241120 None:intergenic 40.0%
TTAAACAGCGTCAAACATCG+AGG + chr6_2:61241239-61241258 None:intergenic 40.0%
!! GTACTTTGAGGTTGAGCTAA+AGG - chr6_2:61241295-61241314 Msa0922540:intron 40.0%
AAAGGAAGTGAAACTCACAG+AGG - chr6_2:61241313-61241332 Msa0922540:intron 40.0%
CACAGAGGATTACTATGTGA+TGG - chr6_2:61241328-61241347 Msa0922540:intron 40.0%
!! ATCTGTGTTGCAGCCATTTT+GGG - chr6_2:61241389-61241408 Msa0922540:intron 40.0%
GCTTCTTACCAAGAAGAACA+AGG - chr6_2:61241457-61241476 Msa0922540:intron 40.0%
ATGGGATACTCCAATTCATG+TGG - chr6_2:61241487-61241506 Msa0922540:intron 40.0%
AGAAGATCAGGGTAGAGAAA+CGG + chr6_2:61241539-61241558 None:intergenic 40.0%
TTCTCTACCCTGATCTTCTA+TGG - chr6_2:61241540-61241559 Msa0922540:intron 40.0%
TCTCTACCCTGATCTTCTAT+GGG - chr6_2:61241541-61241560 Msa0922540:intron 40.0%
GGAAATCCCATAGAAGATCA+GGG + chr6_2:61241550-61241569 None:intergenic 40.0%
AATGTTAGCGGTCACAAGTA+CGG - chr6_2:61241593-61241612 Msa0922540:intron 40.0%
!! TTGTTTACCCTGGTATTGGT+TGG - chr6_2:61241618-61241637 Msa0922540:intron 40.0%
!! TGTTTACCCTGGTATTGGTT+GGG - chr6_2:61241619-61241638 Msa0922540:intron 40.0%
AAACAACCCAACCAATACCA+GGG + chr6_2:61241628-61241647 None:intergenic 40.0%
TGCTTTGTATTTCCTTCGAC+AGG - chr6_2:61241866-61241885 Msa0922540:CDS 40.0%
ACCATTTGAGAAAATACGGG+TGG - chr6_2:61242307-61242326 Msa0922540:five_prime_UTR 40.0%
! TCCACCCGTATTTTCTCAAA+TGG + chr6_2:61242311-61242330 None:intergenic 40.0%
AAAATACGGGTGGATAGTTC+CGG - chr6_2:61242317-61242336 Msa0922540:five_prime_UTR 40.0%
AATCTTCCCTAATCACCACT+CGG + chr6_2:61242383-61242402 None:intergenic 40.0%
TTCCAAAGATGCTCATGTTG+CGG - chr6_2:61242485-61242504 Msa0922540:five_prime_UTR 40.0%
AGAGTCAAGCTGAGATTCTT+AGG - chr6_2:61242553-61242572 Msa0922540:five_prime_UTR 40.0%
AAGCTGAGATTCTTAGGTAC+TGG - chr6_2:61242559-61242578 Msa0922540:five_prime_UTR 40.0%
!! TACTGGAAGAAGCTTGTTGA+TGG - chr6_2:61242576-61242595 Msa0922540:five_prime_UTR 40.0%
AAACCCTTGATTGTTGTGAG+TGG - chr6_2:61242646-61242665 Msa0922540:five_prime_UTR 40.0%
AAGCCACTCACAACAATCAA+GGG + chr6_2:61242652-61242671 None:intergenic 40.0%
AAAGCCACTCACAACAATCA+AGG + chr6_2:61242653-61242672 None:intergenic 40.0%
GTTCATAGATGCATGGACAT+TGG + chr6_2:61242744-61242763 None:intergenic 40.0%
CGAATGTGCAACGCTATGTT+GGG + chr6_2:61238699-61238718 None:intergenic 45.0%
ACGAATGTGCAACGCTATGT+TGG + chr6_2:61238700-61238719 None:intergenic 45.0%
GTTGCACATTCGTCAAGAAG+TGG - chr6_2:61238707-61238726 Msa0922540:CDS 45.0%
TCAACTGTCACACATCCAGA+TGG - chr6_2:61239166-61239185 Msa0922540:intron 45.0%
TTCTAGATACGTGCGTGAAC+AGG - chr6_2:61239219-61239238 Msa0922540:intron 45.0%
TTATGGTTGCGATCGCAGAT+AGG - chr6_2:61239596-61239615 Msa0922540:CDS 45.0%
TGGTATCACAGCGAGTTTGT+TGG - chr6_2:61239667-61239686 Msa0922540:CDS 45.0%
! GATCTTTTGTGTTTGGCGGT+TGG - chr6_2:61240051-61240070 Msa0922540:intron 45.0%
CAATGCTCCTATTGGTGAAG+AGG - chr6_2:61240265-61240284 Msa0922540:intron 45.0%
GCAGTTTCCTCTTCACCAAT+AGG + chr6_2:61240275-61240294 None:intergenic 45.0%
!! CAGTAGGTGTTGGAACTGTA+GGG - chr6_2:61240294-61240313 Msa0922540:intron 45.0%
GTCATCAGAGGCAATAATGC+TGG - chr6_2:61240316-61240335 Msa0922540:intron 45.0%
AGTTACTGGAGCTAATGTGC+AGG - chr6_2:61240412-61240431 Msa0922540:intron 45.0%
TCTGACCTTACCTTTGAGTC+GGG + chr6_2:61240727-61240746 None:intergenic 45.0%
GTCTGACCTTACCTTTGAGT+CGG + chr6_2:61240728-61240747 None:intergenic 45.0%
CTATGTACGTTGTGGATGAG+TGG + chr6_2:61240780-61240799 None:intergenic 45.0%
TTAGCAGGCTATGTACGTTG+TGG + chr6_2:61240788-61240807 None:intergenic 45.0%
AGGAAACAAAGCATGAGACG+GGG + chr6_2:61240863-61240882 None:intergenic 45.0%
GAGGAAACAAAGCATGAGAC+GGG + chr6_2:61240864-61240883 None:intergenic 45.0%
!! CTCATGCTTTGTTTCCTCTG+AGG - chr6_2:61240866-61240885 Msa0922540:intron 45.0%
! GCGCCTTTCTGCTTTAGTTT+AGG - chr6_2:61240985-61241004 Msa0922540:CDS 45.0%
CAAACATCGAGGTCTCTGTT+TGG + chr6_2:61241228-61241247 None:intergenic 45.0%
! TAGCTCAACCTCAAAGTACC+TGG + chr6_2:61241294-61241313 None:intergenic 45.0%
CAAAATGGCTGCAACACAGA+TGG + chr6_2:61241390-61241409 None:intergenic 45.0%
! CATCTGTGTTGCAGCCATTT+TGG - chr6_2:61241388-61241407 Msa0922540:intron 45.0%
! AGTCAGCGTTGAACCCAAAA+TGG + chr6_2:61241405-61241424 None:intergenic 45.0%
!!! ATTTTGGGTTCAACGCTGAC+TGG - chr6_2:61241404-61241423 Msa0922540:intron 45.0%
ACCAAGAAGAACAAGGAGAC+AGG - chr6_2:61241464-61241483 Msa0922540:intron 45.0%
TCCTGTCTCCTTGTTCTTCT+TGG + chr6_2:61241468-61241487 None:intergenic 45.0%
AGAAGAACAAGGAGACAGGA+TGG - chr6_2:61241468-61241487 Msa0922540:intron 45.0%
GAAGAACAAGGAGACAGGAT+GGG - chr6_2:61241469-61241488 Msa0922540:intron 45.0%
CGGAAATCCCATAGAAGATC+AGG + chr6_2:61241551-61241570 None:intergenic 45.0%
ATGGGATTTCCGTTTGCCAT+TGG - chr6_2:61241559-61241578 Msa0922540:intron 45.0%
!! AAGTACGGTCTTGTTTACCC+TGG - chr6_2:61241608-61241627 Msa0922540:intron 45.0%
!! GGTCTTGTTTACCCTGGTAT+TGG - chr6_2:61241614-61241633 Msa0922540:intron 45.0%
CAAACAACCCAACCAATACC+AGG + chr6_2:61241629-61241648 None:intergenic 45.0%
!! CTGGTATTGGTTGGGTTGTT+TGG - chr6_2:61241627-61241646 Msa0922540:intron 45.0%
!! GTATTGGTTGGGTTGTTTGG+AGG - chr6_2:61241630-61241649 Msa0922540:intron 45.0%
! ATTTGACTCGATCCTGTCGA+AGG + chr6_2:61241881-61241900 None:intergenic 45.0%
CGAAGCCAAGCCGTATAAAT+TGG + chr6_2:61241919-61241938 None:intergenic 45.0%
! ATTTATACGGCTTGGCTTCG+AGG - chr6_2:61241919-61241938 Msa0922540:CDS 45.0%
GGCGAACACAAGAATTCTGA+AGG - chr6_2:61242173-61242192 Msa0922540:five_prime_UTR 45.0%
TTCAGAGAGAAGGCTACAAG+TGG + chr6_2:61242252-61242271 None:intergenic 45.0%
AACCGCAACATGAGCATCTT+TGG + chr6_2:61242490-61242509 None:intergenic 45.0%
!! CTTGTTGATGGCAAGAGAGT+TGG - chr6_2:61242588-61242607 Msa0922540:five_prime_UTR 45.0%
GTAACAGCGAGGTGTAGAGT+CGG - chr6_2:61238941-61238960 Msa0922540:CDS 50.0%
TCCTGTCACAACTGAGCTTC+AGG - chr6_2:61239533-61239552 Msa0922540:intron 50.0%
ACCTGAAGCTCAGTTGTGAC+AGG + chr6_2:61239537-61239556 None:intergenic 50.0%
GGTGAAGAGGAAACTGCAGT+AGG - chr6_2:61240278-61240297 Msa0922540:intron 50.0%
GAGGAAACTGCAGTAGGTGT+TGG - chr6_2:61240284-61240303 Msa0922540:intron 50.0%
!! GCAGTAGGTGTTGGAACTGT+AGG - chr6_2:61240293-61240312 Msa0922540:intron 50.0%
TGGAACTGTAGGGTCATCAG+AGG - chr6_2:61240304-61240323 Msa0922540:intron 50.0%
TCAGAGGCAATAATGCTGGC+TGG - chr6_2:61240320-61240339 Msa0922540:intron 50.0%
GACTGCATGCTCACTTCGAT+AGG - chr6_2:61240495-61240514 Msa0922540:intron 50.0%
CGTTCGGACAGAAACATGTG+TGG - chr6_2:61240646-61240665 Msa0922540:intron 50.0%
AGGCTGAAGGCCTAAAGCAA+GGG + chr6_2:61240754-61240773 None:intergenic 50.0%
TAGGCTGAAGGCCTAAAGCA+AGG + chr6_2:61240755-61240774 None:intergenic 50.0%
! ACGTTGTGGATGAGTGGACT+AGG + chr6_2:61240774-61240793 None:intergenic 50.0%
GCAATGTGAGGCCTAAAGCT+AGG + chr6_2:61240897-61240916 None:intergenic 50.0%
TTTAGGCCTCACATTGCCTG+CGG - chr6_2:61240900-61240919 Msa0922540:CDS 50.0%
! AACGCTGACTGGAGAGTTTG+AGG - chr6_2:61241415-61241434 Msa0922540:intron 50.0%
CTCGCAGCATCCACATGAAT+TGG + chr6_2:61241500-61241519 None:intergenic 50.0%
ATTCATGTGGATGCTGCGAG+CGG - chr6_2:61241500-61241519 Msa0922540:intron 50.0%
!! GAGGCATAAAGCTGACTTGC+CGG - chr6_2:61241649-61241668 Msa0922540:intron 50.0%
AAGTGGCACACCTATGTCCT+TGG + chr6_2:61242235-61242254 None:intergenic 50.0%
GCTGCTGTCTTTCAGAGAGA+AGG + chr6_2:61242262-61242281 None:intergenic 50.0%
TGTCCTCCGAGTGGTGATTA+GGG - chr6_2:61242374-61242393 Msa0922540:five_prime_UTR 50.0%
GGAAGATTTCAGCTGCAGCT+TGG - chr6_2:61242395-61242414 Msa0922540:five_prime_UTR 50.0%
TATCGCGAGTGAGACAAGTG+AGG - chr6_2:61242509-61242528 Msa0922540:five_prime_UTR 50.0%
CAAGAGAGTTGGAGCATGCT+AGG - chr6_2:61242599-61242618 Msa0922540:five_prime_UTR 50.0%
AGAAAAGGCCTGCATCAGGG+TGG + chr6_2:61239740-61239759 None:intergenic 55.0%
TAGTAGCAGGCCCGACTCAA+AGG - chr6_2:61240714-61240733 Msa0922540:intron 55.0%
GTCAGACGAGCCCTTGCTTT+AGG - chr6_2:61240741-61240760 Msa0922540:intron 55.0%
!! GGATGAGTGGACTAGGCTGA+AGG + chr6_2:61240767-61240786 None:intergenic 55.0%
! AAAGCTAGGTGTCGCCTCAG+AGG + chr6_2:61240883-61240902 None:intergenic 55.0%
! CTGAGGCGACACCTAGCTTT+AGG - chr6_2:61240883-61240902 Msa0922540:intron 55.0%
CTGTCCTCCGAGTGGTGATT+AGG - chr6_2:61242373-61242392 Msa0922540:five_prime_UTR 55.0%
CTTCCCTAATCACCACTCGG+AGG + chr6_2:61242380-61242399 None:intergenic 55.0%
GCAGGCCCGACTCAAAGGTA+AGG - chr6_2:61240719-61240738 Msa0922540:intron 60.0%
TACCATACAAGGCCGACCGC+AGG + chr6_2:61240919-61240938 None:intergenic 60.0%
TCCGGCCTACACAATGCCAG+CGG - chr6_2:61242335-61242354 Msa0922540:five_prime_UTR 60.0%
TCCGCTGGCATTGTGTAGGC+CGG + chr6_2:61242339-61242358 None:intergenic 60.0%
TGCGTCCGCTGGCATTGTGT+AGG + chr6_2:61242343-61242362 None:intergenic 60.0%
! GCGATGTGTTTTGCGTCCGC+TGG + chr6_2:61242354-61242373 None:intergenic 60.0%
ACACATCGCTGTCCTCCGAG+TGG - chr6_2:61242365-61242384 Msa0922540:five_prime_UTR 60.0%
AGGGTGAGCCACCCTGATGC+AGG - chr6_2:61239729-61239748 Msa0922540:CDS 65.0%
GGCCTCACATTGCCTGCGGT+CGG - chr6_2:61240904-61240923 Msa0922540:CDS 65.0%
! TGCCTGCGGTCGGCCTTGTA+TGG - chr6_2:61240914-61240933 Msa0922540:CDS 65.0%
CATGTGGATGCTGCGAGCGG+TGG - chr6_2:61241503-61241522 Msa0922540:intron 65.0%
GGCCGACCGCAGGCAATGTG+AGG + chr6_2:61240909-61240928 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 61238481 61242843 61238481 ID=Msa0922540;Name=Msa0922540
chr6_2 mRNA 61238481 61242843 61238481 ID=Msa0922540-mRNA-1;Parent=Msa0922540;Name=Msa0922540-mRNA-1;_AED=0.27;_eAED=0.27;_QI=653|1|1|1|0.83|0.71|7|223|499
chr6_2 exon 61238481 61239180 61238481 ID=Msa0922540-mRNA-1:exon:9480;Parent=Msa0922540-mRNA-1
chr6_2 exon 61239384 61239436 61239384 ID=Msa0922540-mRNA-1:exon:9479;Parent=Msa0922540-mRNA-1
chr6_2 exon 61239584 61240052 61239584 ID=Msa0922540-mRNA-1:exon:9478;Parent=Msa0922540-mRNA-1
chr6_2 exon 61240891 61241091 61240891 ID=Msa0922540-mRNA-1:exon:9477;Parent=Msa0922540-mRNA-1
chr6_2 exon 61241770 61241974 61241770 ID=Msa0922540-mRNA-1:exon:9476;Parent=Msa0922540-mRNA-1
chr6_2 exon 61242076 61242208 61242076 ID=Msa0922540-mRNA-1:exon:9475;Parent=Msa0922540-mRNA-1
chr6_2 exon 61242229 61242843 61242229 ID=Msa0922540-mRNA-1:exon:9474;Parent=Msa0922540-mRNA-1
chr6_2 five_prime_UTR 61242229 61242843 61242229 ID=Msa0922540-mRNA-1:five_prime_utr;Parent=Msa0922540-mRNA-1
chr6_2 five_prime_UTR 61242171 61242208 61242171 ID=Msa0922540-mRNA-1:five_prime_utr;Parent=Msa0922540-mRNA-1
chr6_2 CDS 61242076 61242170 61242076 ID=Msa0922540-mRNA-1:cds;Parent=Msa0922540-mRNA-1
chr6_2 CDS 61241770 61241974 61241770 ID=Msa0922540-mRNA-1:cds;Parent=Msa0922540-mRNA-1
chr6_2 CDS 61240891 61241091 61240891 ID=Msa0922540-mRNA-1:cds;Parent=Msa0922540-mRNA-1
chr6_2 CDS 61239584 61240052 61239584 ID=Msa0922540-mRNA-1:cds;Parent=Msa0922540-mRNA-1
chr6_2 CDS 61239384 61239436 61239384 ID=Msa0922540-mRNA-1:cds;Parent=Msa0922540-mRNA-1
chr6_2 CDS 61238704 61239180 61238704 ID=Msa0922540-mRNA-1:cds;Parent=Msa0922540-mRNA-1
chr6_2 three_prime_UTR 61238481 61238703 61238481 ID=Msa0922540-mRNA-1:three_prime_utr;Parent=Msa0922540-mRNA-1
Gene Sequence

>Msa0922540

ATGGTGATTTCTTCAACTGTCACACATCCAGATGGACAAAACGAGAACATAGCATGCACTTTCGCTTCTAGATACGTGCGTGAACAGGTTCCTAAGTTCAAGATGCCAGAGAATTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTGATGTTAGATGGAAAACCAAGGCTTAACTTGGCTTCATTTGTTACTACTTGGATGGAACCTGAGTGTGATAAGCTTATCATGGATTCACTTAACAAGAACTATGTTGATATGGATGAGTATCCTGTCACAACTGAGCTTCAGAACCGGTGTGTGAATATAATAGCACATCTATTCAATGCTCCTATTGGTGAAGAGGAAACTGCAGTAGGTGTTGGAACTGTAGGGTCATCAGAGGCAATAATGCTGGCTGGTTTAGCTTTTAAAAGGAAGTGGCAGACTAAGAGAAAATCAGAAGGCAAACCTTATGATAAGCCTAACATAGTTACTGGAGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCCAGGTACTTTGAGGTTGAGCTAAAGGAAGTGAAACTCACAGAGGATTACTATGTGATGGATCCATTGAAAGCTGTTGAAATGGTAGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGTTCAACGCTGACTGGAGAGTTTGAGGATGTGAAGCTTCTCAACGAGCTTCTTACCAAGAAGAACAAGGAGACAGGATGGGATACTCCAATTCATGTGGATGCTGCGAGCGGTGGATTTGTTGCTCCGTTTCTCTACCCTGATCTTCTATGGGATTTCCGTTTGCCATTGGTGAAAAGTATCAATGTTAGCGGTCACAAGTACGGTCTTGTTTACCCTGGTATTGGTTGGGTTGTTTGGAGGCATAAAGCTGACTTGCCGGATGATCTTGTTTTTCACATCAATTATCTTGGATCTGATCAACCAACTTTCACATTGAATTTCTCCAAAGGATCGAGTCAAATCATTGCTCAATACTACCAATTTATACGGCTTGGCTTCGAGGGCTACAAAAATGTGATGGAAAATTGCTTGGCGAACACAAGAATTCTGAAGGAAGGAATTGAGAAAACAGGAAGGTTTAAAATTGTCTCCAAGGACATAGGTGTGCCACTTGTAGCCTTCTCTCTGAAAGACAGCAGCAAACACACAGTGTTCGAGATAGCAGACCATTTGAGAAAATACGGGTGGATAGTTCCGGCCTACACAATGCCAGCGGACGCAAAACACATCGCTGTCCTCCGAGTGGTGATTAGGGAAGATTTCAGCTGCAGCTTGGCTGAAAGACTTGTTTCTGACATAGAAAAAGTTGTGAATCTCTTGGACACACTTCCAAGTTCTATCAATTCCAAAGATGCTCATGTTGCGGTTATCGCGAGTGAGACAAGTGAGGAAGTTAAGAAAGATATTACTGAGAGTCAAGCTGAGATTCTTAGGTACTGGAAGAAGCTTGTTGATGGCAAGAGAGTTGGAGCATGCTAG

Protein sequence

>Msa0922540

MVISSTVTHPDGQNENIACTFASRYVREQVPKFKMPENSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGEEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEDYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWDTPIHVDAASGGFVAPFLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVWRHKADLPDDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCLANTRILKEGIEKTGRFKIVSKDIGVPLVAFSLKDSSKHTVFEIADHLRKYGWIVPAYTMPADAKHIAVLRVVIREDFSCSLAERLVSDIEKVVNLLDTLPSSINSKDAHVAVIASETSEEVKKDITESQAEILRYWKKLVDGKRVGAC*