AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1224670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224670 MtrunA17_Chr4g0075721 89.952 209 9 3 3 210 4 201 3.07e-109 311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224670 AT5G20130.1 50.867 173 79 3 39 210 35 202 8.31e-42 140
Msa1224670 AT5G20130.2 50.867 173 79 3 39 210 64 231 3.75e-41 140

Find 87 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACCTGAGTGATTAATTT+TGG 0.189253 8_1:-89735133 Msa1224670:three_prime_UTR
AAATAACACTATGCTCTAAA+AGG 0.194684 8_1:+89735259 None:intergenic
GTTGGTTTGGGTGGGGTAGA+TGG 0.204366 8_1:-89735728 Msa1224670:CDS
CAAGCTTGTAGAGGATAATT+TGG 0.207892 8_1:+89735076 None:intergenic
CTGGAGGAGGTTGGTTTGGG+TGG 0.219431 8_1:-89735737 Msa1224670:CDS
AAGAGAGCGTTGTAAGAAAA+TGG 0.252399 8_1:-89735328 Msa1224670:CDS
TCCATTGCTGTATGCACTTC+GGG 0.261348 8_1:-89735468 Msa1224670:CDS
TAAAAGAGTTCAGAGTTATT+AGG 0.290552 8_1:-89735025 Msa1224670:three_prime_UTR
TTTGGACGTTAACTGAATTC+AGG 0.299821 8_1:+89735094 None:intergenic
GTGCTGGAGGAGGTTGGTTT+GGG 0.308879 8_1:-89735740 Msa1224670:CDS
GGTGCTGGAGGAGGTTGGTT+TGG 0.312842 8_1:-89735741 Msa1224670:CDS
TGGAGGAGGTTGGTTTGGGT+GGG 0.343284 8_1:-89735736 Msa1224670:CDS
GGAGGAGGTTGGTTTGGGTG+GGG 0.346451 8_1:-89735735 Msa1224670:CDS
TTTGGGTGGGGTAGATGGTT+TGG 0.362531 8_1:-89735723 Msa1224670:CDS
TTTATATTACCCCTCATTGT+TGG 0.370611 8_1:-89735239 Msa1224670:three_prime_UTR
CGAGCTGCTTAGTCGTCAAT+TGG 0.372187 8_1:+89736742 None:intergenic
TTCAGAGTTATTAGGTTAAA+CGG 0.375387 8_1:-89735017 Msa1224670:three_prime_UTR
TTCAAAGAGCCATCAAAATC+AGG 0.393603 8_1:+89735380 None:intergenic
GGAGGTGACAGCGGCGGTGC+TGG 0.396880 8_1:-89735756 Msa1224670:CDS
AGAGAGCGTTGTAAGAAAAT+GGG 0.401097 8_1:-89735327 Msa1224670:CDS
ATACAGCATGGAGCATAATA+AGG 0.404987 8_1:+89735205 None:intergenic
ATCCTCTACAAGCTTGCAAT+TGG 0.413331 8_1:-89735069 Msa1224670:three_prime_UTR
CGGGGAGTGAGAAATGGATT+TGG 0.413388 8_1:-89735449 Msa1224670:CDS
AATCAAAAGACGAGAAGAGC+TGG 0.418830 8_1:-89735784 Msa1224670:CDS
AACGATGGCGTGACCTGATT+AGG 0.420437 8_1:+89736766 None:intergenic
AATAACACTATGCTCTAAAA+GGG 0.435280 8_1:+89735260 None:intergenic
CAAGCTAGTCTTACTATACT+TGG 0.438781 8_1:-89735663 Msa1224670:CDS
TCCCGTATTCAATCCTAATC+AGG 0.439070 8_1:-89736779 Msa1224670:CDS
CGAGAAGAGCTGGGAGGCGG+AGG 0.440547 8_1:-89735774 Msa1224670:CDS
TTATTTGTTTGTCACAGGTT+AGG 0.453977 8_1:-89735289 Msa1224670:three_prime_UTR
CTCCATGCTGTATGTTAGTA+AGG 0.457008 8_1:-89735195 Msa1224670:three_prime_UTR
GACAGCGGCGGTGCTGGAGG+AGG 0.464114 8_1:-89735750 Msa1224670:CDS
GCACTTCGGGGAGTGAGAAA+TGG 0.464500 8_1:-89735455 Msa1224670:CDS
CAAGCTAGAAAAGCATTAGA+AGG 0.475399 8_1:-89735852 Msa1224670:CDS
GGTGGGGTAGATGGTTTGGC+TGG 0.477513 8_1:-89735719 Msa1224670:CDS
GTAGATTATTTGTTTGTCAC+AGG 0.478487 8_1:-89735294 Msa1224670:three_prime_UTR
AGAAAATTGAATTTGACAAG+TGG 0.484614 8_1:-89735815 Msa1224670:CDS
ATCCATTGCTGTATGCACTT+CGG 0.485612 8_1:-89735469 Msa1224670:CDS
CAGTATATCCTAGTTGCAAA+AGG 0.489427 8_1:-89735518 Msa1224670:CDS
TTGAATACGGGACTCCTCCT+AGG 0.496159 8_1:+89736790 None:intergenic
GACCTGATTAGGATTGAATA+CGG 0.498106 8_1:+89736777 None:intergenic
GGTGTGTGGGATGGTGGTAG+AGG 0.504593 8_1:-89736843 Msa1224670:five_prime_UTR
AGAGTTGGTGTGTGGGATGG+TGG 0.513386 8_1:-89736849 Msa1224670:five_prime_UTR
GGTGACAGCGGCGGTGCTGG+AGG 0.514884 8_1:-89735753 Msa1224670:CDS
GAAAATTGAATTTGACAAGT+GGG 0.514902 8_1:-89735814 Msa1224670:CDS
GAGCTGCTTAGTCGTCAATT+GGG 0.516872 8_1:+89736743 None:intergenic
AGACGAGAAGAGCTGGGAGG+CGG 0.517079 8_1:-89735777 Msa1224670:CDS
GCGGCGGTGCTGGAGGAGGT+TGG 0.517578 8_1:-89735746 Msa1224670:CDS
AGAGGCATGTGAATCTGCTT+CGG 0.520608 8_1:+89736667 None:intergenic
AGGAAAACTAAGTGGAGGAA+TGG 0.522546 8_1:-89736823 Msa1224670:exon
GCATTAGAAGGTGCATTAAG+TGG 0.523555 8_1:-89735840 Msa1224670:CDS
CTACAAGCTTGCAATTGGTA+AGG 0.528899 8_1:-89735064 Msa1224670:three_prime_UTR
AATTAATCACTCAGGTGCCA+AGG 0.537967 8_1:+89735137 None:intergenic
ATGAATTAAGAATCTAGAGT+TGG 0.537993 8_1:-89736864 None:intergenic
GATGGCTCTTTGAAGAAGGA+AGG 0.548351 8_1:-89735371 Msa1224670:CDS
ATTAATCACTCAGGTGCCAA+GGG 0.555177 8_1:+89735138 None:intergenic
GAGAGCGTTGTAAGAAAATG+GGG 0.569827 8_1:-89735326 Msa1224670:CDS
CTGGGAGGCGGAGGTGACAG+CGG 0.571119 8_1:-89735765 Msa1224670:CDS
AAGAATCTAGAGTTGGTGTG+TGG 0.580427 8_1:-89736857 None:intergenic
GGAGGCGGAGGTGACAGCGG+CGG 0.580483 8_1:-89735762 Msa1224670:CDS
CGCCTTACTAACATACAGCA+TGG 0.581053 8_1:+89735193 None:intergenic
TACCAATTGCAAGCTTGTAG+AGG 0.582402 8_1:+89735067 None:intergenic
ATCAAAAGACGAGAAGAGCT+GGG 0.583730 8_1:-89735783 Msa1224670:CDS
CATTAGAAGGTGCATTAAGT+GGG 0.584288 8_1:-89735839 Msa1224670:CDS
CCCCGAAGTGCATACAGCAA+TGG 0.590470 8_1:+89735467 None:intergenic
GATGAAAGAACCAACAATGA+GGG 0.593980 8_1:+89735229 None:intergenic
TCTAGAGTTGGTGTGTGGGA+TGG 0.597228 8_1:-89736852 Msa1224670:five_prime_UTR
ACACTATGCTCTAAAAGGGA+TGG 0.600166 8_1:+89735264 None:intergenic
AAAACCAAAATTAATCACTC+AGG 0.601447 8_1:+89735129 None:intergenic
GGAATGGAAATTGTAAACCT+AGG 0.606359 8_1:-89736807 Msa1224670:CDS
TGATGAAAGAACCAACAATG+AGG 0.607409 8_1:+89735228 None:intergenic
GGTGGTAGAGGAAAACTAAG+TGG 0.613303 8_1:-89736831 Msa1224670:five_prime_UTR
AGAATCTAGAGTTGGTGTGT+GGG 0.616567 8_1:-89736856 Msa1224670:five_prime_UTR
ACCTGATTAGGATTGAATAC+GGG 0.620878 8_1:+89736778 None:intergenic
GCATGTGAATCTGCTTCGGT+TGG 0.624681 8_1:+89736671 None:intergenic
ATGGAAATTGTAAACCTAGG+AGG 0.633667 8_1:-89736804 Msa1224670:CDS
ATACAGCAATGGATTGATGA+TGG 0.639169 8_1:+89735478 None:intergenic
CTCAGACAACAACAAAAGAG+AGG 0.641852 8_1:-89736643 Msa1224670:intron
TAGTCGTCAATTGGGAACGA+TGG 0.645640 8_1:+89736751 None:intergenic
CCATTGCTGTATGCACTTCG+GGG 0.665878 8_1:-89735467 Msa1224670:CDS
ATGAAAGAACCAACAATGAG+GGG 0.668798 8_1:+89735230 None:intergenic
GGTAGAGGAAAACTAAGTGG+AGG 0.681210 8_1:-89736828 Msa1224670:five_prime_UTR
AGAGTTATTAGGTTAAACGG+TGG 0.683770 8_1:-89735014 None:intergenic
AACTGAATTCAGGATAACCA+CGG 0.705138 8_1:+89735104 None:intergenic
TTAATCACTCAGGTGCCAAG+GGG 0.720967 8_1:+89735139 None:intergenic
ATGGATTGATGATGGCAGCG+AGG 0.723355 8_1:+89735486 None:intergenic
AAAAGACGAGAAGAGCTGGG+AGG 0.769117 8_1:-89735780 Msa1224670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCCATATATTTATTATT+AGG + chr8_1:89735600-89735619 None:intergenic 10.0%
!!! TTTATCTTAATTTATTTTGT+TGG - chr8_1:89735699-89735718 Msa1224670:CDS 10.0%
!! AAATCCATATATTTATTATT+AGG + chr8_1:89735600-89735619 None:intergenic 10.0%
!!! TTTATCTTAATTTATTTTGT+TGG - chr8_1:89735699-89735718 Msa1224670:CDS 10.0%
!! AAGTTGTATCTTATTATATT+CGG + chr8_1:89735542-89735561 None:intergenic 15.0%
!! ATTGGAATCATAAATAAATT+AGG + chr8_1:89735577-89735596 None:intergenic 15.0%
!! CATATATTTATTATTAGGAT+TGG + chr8_1:89735595-89735614 None:intergenic 15.0%
!! CAATCCTAATAATAAATATA+TGG - chr8_1:89735593-89735612 Msa1224670:intron 15.0%
!! AATTAAATATGTTCTACATT+AGG + chr8_1:89735728-89735747 None:intergenic 15.0%
!! AAGTTGTATCTTATTATATT+CGG + chr8_1:89735542-89735561 None:intergenic 15.0%
!! ATTGGAATCATAAATAAATT+AGG + chr8_1:89735577-89735596 None:intergenic 15.0%
!! CATATATTTATTATTAGGAT+TGG + chr8_1:89735595-89735614 None:intergenic 15.0%
!! CAATCCTAATAATAAATATA+TGG - chr8_1:89735593-89735612 Msa1224670:intron 15.0%
!! AATTAAATATGTTCTACATT+AGG + chr8_1:89735728-89735747 None:intergenic 15.0%
!! TGAATGAATGAATATGAAAT+AGG + chr8_1:89735257-89735276 None:intergenic 20.0%
!! CAAAAAATAAAACTGAAGTT+GGG + chr8_1:89735302-89735321 None:intergenic 20.0%
!! ACAAAAAATAAAACTGAAGT+TGG + chr8_1:89735303-89735322 None:intergenic 20.0%
!! ATATGCTATTATAAATAGAG+AGG + chr8_1:89735515-89735534 None:intergenic 20.0%
!! CAGTGATAAATTAATTTCTA+TGG + chr8_1:89735858-89735877 None:intergenic 20.0%
!! TGAATGAATGAATATGAAAT+AGG + chr8_1:89735257-89735276 None:intergenic 20.0%
!! CAAAAAATAAAACTGAAGTT+GGG + chr8_1:89735302-89735321 None:intergenic 20.0%
!! ACAAAAAATAAAACTGAAGT+TGG + chr8_1:89735303-89735322 None:intergenic 20.0%
!! ATATGCTATTATAAATAGAG+AGG + chr8_1:89735515-89735534 None:intergenic 20.0%
!! CAGTGATAAATTAATTTCTA+TGG + chr8_1:89735858-89735877 None:intergenic 20.0%
! TAAAGAAATGAATTGCTATG+AGG + chr8_1:89735438-89735457 None:intergenic 25.0%
! TAAATATGTTCTACATTAGG+AGG + chr8_1:89735725-89735744 None:intergenic 25.0%
!! TATAGTCTCTGATCTAATTT+TGG - chr8_1:89735816-89735835 Msa1224670:CDS 25.0%
!! ATAGTCTCTGATCTAATTTT+GGG - chr8_1:89735817-89735836 Msa1224670:CDS 25.0%
! AGAAAATTGAATTTGACAAG+TGG - chr8_1:89736053-89736072 Msa1224670:intron 25.0%
! GAAAATTGAATTTGACAAGT+GGG - chr8_1:89736054-89736073 Msa1224670:intron 25.0%
!! GGTCTAATGATGATAATTTT+TGG - chr8_1:89736170-89736189 Msa1224670:intron 25.0%
! GTCTTGAAAAATACTTCTAA+CGG - chr8_1:89736458-89736477 Msa1224670:intron 25.0%
!!! AATAACACTATGCTCTAAAA+GGG + chr8_1:89736611-89736630 None:intergenic 25.0%
!! AAATAACACTATGCTCTAAA+AGG + chr8_1:89736612-89736631 None:intergenic 25.0%
! AAAACCAAAATTAATCACTC+AGG + chr8_1:89736742-89736761 None:intergenic 25.0%
!! AATAACTCTGAACTCTTTTA+CGG + chr8_1:89736843-89736862 None:intergenic 25.0%
! TAAAAGAGTTCAGAGTTATT+AGG - chr8_1:89736843-89736862 Msa1224670:five_prime_UTR 25.0%
! TTCAGAGTTATTAGGTTAAA+CGG - chr8_1:89736851-89736870 Msa1224670:five_prime_UTR 25.0%
! TAAAGAAATGAATTGCTATG+AGG + chr8_1:89735438-89735457 None:intergenic 25.0%
! TAAATATGTTCTACATTAGG+AGG + chr8_1:89735725-89735744 None:intergenic 25.0%
!! TATAGTCTCTGATCTAATTT+TGG - chr8_1:89735816-89735835 Msa1224670:CDS 25.0%
!! ATAGTCTCTGATCTAATTTT+GGG - chr8_1:89735817-89735836 Msa1224670:CDS 25.0%
! AGAAAATTGAATTTGACAAG+TGG - chr8_1:89736053-89736072 Msa1224670:intron 25.0%
! GAAAATTGAATTTGACAAGT+GGG - chr8_1:89736054-89736073 Msa1224670:intron 25.0%
!! GGTCTAATGATGATAATTTT+TGG - chr8_1:89736170-89736189 Msa1224670:intron 25.0%
! GTCTTGAAAAATACTTCTAA+CGG - chr8_1:89736458-89736477 Msa1224670:intron 25.0%
!!! AATAACACTATGCTCTAAAA+GGG + chr8_1:89736611-89736630 None:intergenic 25.0%
!! AAATAACACTATGCTCTAAA+AGG + chr8_1:89736612-89736631 None:intergenic 25.0%
! AAAACCAAAATTAATCACTC+AGG + chr8_1:89736742-89736761 None:intergenic 25.0%
!! AATAACTCTGAACTCTTTTA+CGG + chr8_1:89736843-89736862 None:intergenic 25.0%
! TAAAAGAGTTCAGAGTTATT+AGG - chr8_1:89736843-89736862 Msa1224670:five_prime_UTR 25.0%
! TTCAGAGTTATTAGGTTAAA+CGG - chr8_1:89736851-89736870 Msa1224670:five_prime_UTR 25.0%
AAATTACTACAATACTCGCT+TGG + chr8_1:89735388-89735407 None:intergenic 30.0%
! TAATTTGTGGTAGCATTTCA+TGG - chr8_1:89735402-89735421 Msa1224670:CDS 30.0%
AATCAACATAGTATGAGAGT+AGG + chr8_1:89735479-89735498 None:intergenic 30.0%
CAAACAAGTTCAGTTAAGAA+AGG + chr8_1:89735671-89735690 None:intergenic 30.0%
! CTTTCTTAACTGAACTTGTT+TGG - chr8_1:89735669-89735688 Msa1224670:CDS 30.0%
! TAGTCTCTGATCTAATTTTG+GGG - chr8_1:89735818-89735837 Msa1224670:CDS 30.0%
! CATATCTGAGACTATAAATG+CGG + chr8_1:89735913-89735932 None:intergenic 30.0%
GCATTTATAGTCTCAGATAT+GGG - chr8_1:89735912-89735931 Msa1224670:intron 30.0%
CATTTATAGTCTCAGATATG+GGG - chr8_1:89735913-89735932 Msa1224670:intron 30.0%
ATTTATAGTCTCAGATATGG+GGG - chr8_1:89735914-89735933 Msa1224670:intron 30.0%
TATAAGTGAATTCTGATTGC+AGG - chr8_1:89735991-89736010 Msa1224670:intron 30.0%
ACTGCAAATAAAGAGAGATA+AGG + chr8_1:89736334-89736353 None:intergenic 30.0%
GTAGATTATTTGTTTGTCAC+AGG - chr8_1:89736574-89736593 Msa1224670:intron 30.0%
TTATTTGTTTGTCACAGGTT+AGG - chr8_1:89736579-89736598 Msa1224670:intron 30.0%
TTTATATTACCCCTCATTGT+TGG - chr8_1:89736629-89736648 Msa1224670:intron 30.0%
! AGGGGAGAAAAAACATTTTT+GGG + chr8_1:89736714-89736733 None:intergenic 30.0%
! AAGGGGAGAAAAAACATTTT+TGG + chr8_1:89736715-89736734 None:intergenic 30.0%
!!! AAAAATGTTTTTTCTCCCCT+TGG - chr8_1:89736714-89736733 Msa1224670:CDS 30.0%
!!! ATTAATTTTGGTTTTCTCCG+TGG - chr8_1:89736747-89736766 Msa1224670:CDS 30.0%
AAATTACTACAATACTCGCT+TGG + chr8_1:89735388-89735407 None:intergenic 30.0%
! TAATTTGTGGTAGCATTTCA+TGG - chr8_1:89735402-89735421 Msa1224670:CDS 30.0%
AATCAACATAGTATGAGAGT+AGG + chr8_1:89735479-89735498 None:intergenic 30.0%
CAAACAAGTTCAGTTAAGAA+AGG + chr8_1:89735671-89735690 None:intergenic 30.0%
! CTTTCTTAACTGAACTTGTT+TGG - chr8_1:89735669-89735688 Msa1224670:CDS 30.0%
! TAGTCTCTGATCTAATTTTG+GGG - chr8_1:89735818-89735837 Msa1224670:CDS 30.0%
! CATATCTGAGACTATAAATG+CGG + chr8_1:89735913-89735932 None:intergenic 30.0%
GCATTTATAGTCTCAGATAT+GGG - chr8_1:89735912-89735931 Msa1224670:intron 30.0%
CATTTATAGTCTCAGATATG+GGG - chr8_1:89735913-89735932 Msa1224670:intron 30.0%
ATTTATAGTCTCAGATATGG+GGG - chr8_1:89735914-89735933 Msa1224670:intron 30.0%
TATAAGTGAATTCTGATTGC+AGG - chr8_1:89735991-89736010 Msa1224670:intron 30.0%
ACTGCAAATAAAGAGAGATA+AGG + chr8_1:89736334-89736353 None:intergenic 30.0%
GTAGATTATTTGTTTGTCAC+AGG - chr8_1:89736574-89736593 Msa1224670:intron 30.0%
TTATTTGTTTGTCACAGGTT+AGG - chr8_1:89736579-89736598 Msa1224670:intron 30.0%
TTTATATTACCCCTCATTGT+TGG - chr8_1:89736629-89736648 Msa1224670:intron 30.0%
! AGGGGAGAAAAAACATTTTT+GGG + chr8_1:89736714-89736733 None:intergenic 30.0%
! AAGGGGAGAAAAAACATTTT+TGG + chr8_1:89736715-89736734 None:intergenic 30.0%
!!! AAAAATGTTTTTTCTCCCCT+TGG - chr8_1:89736714-89736733 Msa1224670:CDS 30.0%
!!! ATTAATTTTGGTTTTCTCCG+TGG - chr8_1:89736747-89736766 Msa1224670:CDS 30.0%
GGAATGGAAATTGTAAACCT+AGG - chr8_1:89735061-89735080 Msa1224670:three_prime_UTR 35.0%
ATGGAAATTGTAAACCTAGG+AGG - chr8_1:89735064-89735083 Msa1224670:three_prime_UTR 35.0%
ACCTGATTAGGATTGAATAC+GGG + chr8_1:89735093-89735112 None:intergenic 35.0%
GACCTGATTAGGATTGAATA+CGG + chr8_1:89735094-89735113 None:intergenic 35.0%
! ACTCTTCCGTTGATGAAAAA+TGG - chr8_1:89735149-89735168 Msa1224670:three_prime_UTR 35.0%
!!! TTTTGTTGTTGTCTGAGAAG+AGG + chr8_1:89735222-89735241 None:intergenic 35.0%
AATACTCGCTTGGTTATTGT+TGG + chr8_1:89735378-89735397 None:intergenic 35.0%
! GCGAGTATTGTAGTAATTTG+TGG - chr8_1:89735389-89735408 Msa1224670:CDS 35.0%
TGCAATTTACTGTCACACTT+TGG - chr8_1:89735639-89735658 Msa1224670:intron 35.0%
CGCATTTATAGTCTCAGATA+TGG - chr8_1:89735911-89735930 Msa1224670:intron 35.0%
AATTTGAGAAGTGAGTTCTG+AGG - chr8_1:89735958-89735977 Msa1224670:intron 35.0%
! ATTTGAGAAGTGAGTTCTGA+GGG - chr8_1:89735959-89735978 Msa1224670:intron 35.0%
!! CAAGCTAGAAAAGCATTAGA+AGG - chr8_1:89736016-89736035 Msa1224670:intron 35.0%
! CATTAGAAGGTGCATTAAGT+GGG - chr8_1:89736029-89736048 Msa1224670:intron 35.0%
!! CAAGCTAGTCTTACTATACT+TGG - chr8_1:89736205-89736224 Msa1224670:intron 35.0%
CAGTATATCCTAGTTGCAAA+AGG - chr8_1:89736350-89736369 Msa1224670:intron 35.0%
! TCAAATCACCTTTTGCAACT+AGG + chr8_1:89736361-89736380 None:intergenic 35.0%
!! ATACAGCAATGGATTGATGA+TGG + chr8_1:89736393-89736412 None:intergenic 35.0%
TTCAAAGAGCCATCAAAATC+AGG + chr8_1:89736491-89736510 None:intergenic 35.0%
!! TTTTGATGGCTCTTTGAAGA+AGG - chr8_1:89736493-89736512 Msa1224670:intron 35.0%
!! AAGAGAGCGTTGTAAGAAAA+TGG - chr8_1:89736540-89736559 Msa1224670:intron 35.0%
!! AGAGAGCGTTGTAAGAAAAT+GGG - chr8_1:89736541-89736560 Msa1224670:intron 35.0%
ATGAAAGAACCAACAATGAG+GGG + chr8_1:89736641-89736660 None:intergenic 35.0%
GATGAAAGAACCAACAATGA+GGG + chr8_1:89736642-89736661 None:intergenic 35.0%
TGATGAAAGAACCAACAATG+AGG + chr8_1:89736643-89736662 None:intergenic 35.0%
ATACAGCATGGAGCATAATA+AGG + chr8_1:89736666-89736685 None:intergenic 35.0%
AACTGAATTCAGGATAACCA+CGG + chr8_1:89736767-89736786 None:intergenic 35.0%
TTTGGACGTTAACTGAATTC+AGG + chr8_1:89736777-89736796 None:intergenic 35.0%
CAAGCTTGTAGAGGATAATT+TGG + chr8_1:89736795-89736814 None:intergenic 35.0%
GGAATGGAAATTGTAAACCT+AGG - chr8_1:89735061-89735080 Msa1224670:three_prime_UTR 35.0%
ATGGAAATTGTAAACCTAGG+AGG - chr8_1:89735064-89735083 Msa1224670:three_prime_UTR 35.0%
ACCTGATTAGGATTGAATAC+GGG + chr8_1:89735093-89735112 None:intergenic 35.0%
GACCTGATTAGGATTGAATA+CGG + chr8_1:89735094-89735113 None:intergenic 35.0%
! ACTCTTCCGTTGATGAAAAA+TGG - chr8_1:89735149-89735168 Msa1224670:three_prime_UTR 35.0%
!!! TTTTGTTGTTGTCTGAGAAG+AGG + chr8_1:89735222-89735241 None:intergenic 35.0%
AATACTCGCTTGGTTATTGT+TGG + chr8_1:89735378-89735397 None:intergenic 35.0%
! GCGAGTATTGTAGTAATTTG+TGG - chr8_1:89735389-89735408 Msa1224670:CDS 35.0%
TGCAATTTACTGTCACACTT+TGG - chr8_1:89735639-89735658 Msa1224670:intron 35.0%
CGCATTTATAGTCTCAGATA+TGG - chr8_1:89735911-89735930 Msa1224670:intron 35.0%
AATTTGAGAAGTGAGTTCTG+AGG - chr8_1:89735958-89735977 Msa1224670:intron 35.0%
! ATTTGAGAAGTGAGTTCTGA+GGG - chr8_1:89735959-89735978 Msa1224670:intron 35.0%
!! CAAGCTAGAAAAGCATTAGA+AGG - chr8_1:89736016-89736035 Msa1224670:intron 35.0%
! CATTAGAAGGTGCATTAAGT+GGG - chr8_1:89736029-89736048 Msa1224670:intron 35.0%
!! CAAGCTAGTCTTACTATACT+TGG - chr8_1:89736205-89736224 Msa1224670:intron 35.0%
CAGTATATCCTAGTTGCAAA+AGG - chr8_1:89736350-89736369 Msa1224670:intron 35.0%
! TCAAATCACCTTTTGCAACT+AGG + chr8_1:89736361-89736380 None:intergenic 35.0%
!! ATACAGCAATGGATTGATGA+TGG + chr8_1:89736393-89736412 None:intergenic 35.0%
TTCAAAGAGCCATCAAAATC+AGG + chr8_1:89736491-89736510 None:intergenic 35.0%
!! TTTTGATGGCTCTTTGAAGA+AGG - chr8_1:89736493-89736512 Msa1224670:intron 35.0%
!! AAGAGAGCGTTGTAAGAAAA+TGG - chr8_1:89736540-89736559 Msa1224670:intron 35.0%
!! AGAGAGCGTTGTAAGAAAAT+GGG - chr8_1:89736541-89736560 Msa1224670:intron 35.0%
ATGAAAGAACCAACAATGAG+GGG + chr8_1:89736641-89736660 None:intergenic 35.0%
GATGAAAGAACCAACAATGA+GGG + chr8_1:89736642-89736661 None:intergenic 35.0%
TGATGAAAGAACCAACAATG+AGG + chr8_1:89736643-89736662 None:intergenic 35.0%
ATACAGCATGGAGCATAATA+AGG + chr8_1:89736666-89736685 None:intergenic 35.0%
AACTGAATTCAGGATAACCA+CGG + chr8_1:89736767-89736786 None:intergenic 35.0%
TTTGGACGTTAACTGAATTC+AGG + chr8_1:89736777-89736796 None:intergenic 35.0%
CAAGCTTGTAGAGGATAATT+TGG + chr8_1:89736795-89736814 None:intergenic 35.0%
AGGAAAACTAAGTGGAGGAA+TGG - chr8_1:89735045-89735064 Msa1224670:three_prime_UTR 40.0%
TCCCGTATTCAATCCTAATC+AGG - chr8_1:89735089-89735108 Msa1224670:three_prime_UTR 40.0%
!! GCGACTCCATTTTTCATCAA+CGG + chr8_1:89735158-89735177 None:intergenic 40.0%
CTCAGACAACAACAAAAGAG+AGG - chr8_1:89735225-89735244 Msa1224670:three_prime_UTR 40.0%
GACAACAACAAAAGAGAGGT+AGG - chr8_1:89735229-89735248 Msa1224670:three_prime_UTR 40.0%
CAAATTATGCAGGCAGTGAA+AGG + chr8_1:89735343-89735362 None:intergenic 40.0%
AGGGATAAGGCAAATTATGC+AGG + chr8_1:89735353-89735372 None:intergenic 40.0%
! GTTATTGTTGGCTAGGGATA+AGG + chr8_1:89735366-89735385 None:intergenic 40.0%
TCAGATATGGGGGAATTAAG+TGG - chr8_1:89735924-89735943 Msa1224670:intron 40.0%
CAGATATGGGGGAATTAAGT+GGG - chr8_1:89735925-89735944 Msa1224670:intron 40.0%
! GCATTAGAAGGTGCATTAAG+TGG - chr8_1:89736028-89736047 Msa1224670:intron 40.0%
AATCAAAAGACGAGAAGAGC+TGG - chr8_1:89736084-89736103 Msa1224670:intron 40.0%
ATCAAAAGACGAGAAGAGCT+GGG - chr8_1:89736085-89736104 Msa1224670:intron 40.0%
ATCCATTGCTGTATGCACTT+CGG - chr8_1:89736399-89736418 Msa1224670:intron 40.0%
!! GAGAGCGTTGTAAGAAAATG+GGG - chr8_1:89736542-89736561 Msa1224670:intron 40.0%
!! ACACTATGCTCTAAAAGGGA+TGG + chr8_1:89736607-89736626 None:intergenic 40.0%
CTCCATGCTGTATGTTAGTA+AGG - chr8_1:89736673-89736692 Msa1224670:CDS 40.0%
ATTAATCACTCAGGTGCCAA+GGG + chr8_1:89736733-89736752 None:intergenic 40.0%
AATTAATCACTCAGGTGCCA+AGG + chr8_1:89736734-89736753 None:intergenic 40.0%
! GGCACCTGAGTGATTAATTT+TGG - chr8_1:89736735-89736754 Msa1224670:CDS 40.0%
ATCCTCTACAAGCTTGCAAT+TGG - chr8_1:89736799-89736818 Msa1224670:CDS 40.0%
TACCAATTGCAAGCTTGTAG+AGG + chr8_1:89736804-89736823 None:intergenic 40.0%
CTACAAGCTTGCAATTGGTA+AGG - chr8_1:89736804-89736823 Msa1224670:CDS 40.0%
AGGAAAACTAAGTGGAGGAA+TGG - chr8_1:89735045-89735064 Msa1224670:three_prime_UTR 40.0%
TCCCGTATTCAATCCTAATC+AGG - chr8_1:89735089-89735108 Msa1224670:three_prime_UTR 40.0%
!! GCGACTCCATTTTTCATCAA+CGG + chr8_1:89735158-89735177 None:intergenic 40.0%
CTCAGACAACAACAAAAGAG+AGG - chr8_1:89735225-89735244 Msa1224670:three_prime_UTR 40.0%
GACAACAACAAAAGAGAGGT+AGG - chr8_1:89735229-89735248 Msa1224670:three_prime_UTR 40.0%
CAAATTATGCAGGCAGTGAA+AGG + chr8_1:89735343-89735362 None:intergenic 40.0%
AGGGATAAGGCAAATTATGC+AGG + chr8_1:89735353-89735372 None:intergenic 40.0%
! GTTATTGTTGGCTAGGGATA+AGG + chr8_1:89735366-89735385 None:intergenic 40.0%
TCAGATATGGGGGAATTAAG+TGG - chr8_1:89735924-89735943 Msa1224670:intron 40.0%
CAGATATGGGGGAATTAAGT+GGG - chr8_1:89735925-89735944 Msa1224670:intron 40.0%
! GCATTAGAAGGTGCATTAAG+TGG - chr8_1:89736028-89736047 Msa1224670:intron 40.0%
AATCAAAAGACGAGAAGAGC+TGG - chr8_1:89736084-89736103 Msa1224670:intron 40.0%
ATCAAAAGACGAGAAGAGCT+GGG - chr8_1:89736085-89736104 Msa1224670:intron 40.0%
ATCCATTGCTGTATGCACTT+CGG - chr8_1:89736399-89736418 Msa1224670:intron 40.0%
!! GAGAGCGTTGTAAGAAAATG+GGG - chr8_1:89736542-89736561 Msa1224670:intron 40.0%
!! ACACTATGCTCTAAAAGGGA+TGG + chr8_1:89736607-89736626 None:intergenic 40.0%
CTCCATGCTGTATGTTAGTA+AGG - chr8_1:89736673-89736692 Msa1224670:CDS 40.0%
ATTAATCACTCAGGTGCCAA+GGG + chr8_1:89736733-89736752 None:intergenic 40.0%
AATTAATCACTCAGGTGCCA+AGG + chr8_1:89736734-89736753 None:intergenic 40.0%
! GGCACCTGAGTGATTAATTT+TGG - chr8_1:89736735-89736754 Msa1224670:CDS 40.0%
ATCCTCTACAAGCTTGCAAT+TGG - chr8_1:89736799-89736818 Msa1224670:CDS 40.0%
TACCAATTGCAAGCTTGTAG+AGG + chr8_1:89736804-89736823 None:intergenic 40.0%
CTACAAGCTTGCAATTGGTA+AGG - chr8_1:89736804-89736823 Msa1224670:CDS 40.0%
GGTGGTAGAGGAAAACTAAG+TGG - chr8_1:89735037-89735056 Msa1224670:three_prime_UTR 45.0%
GGTAGAGGAAAACTAAGTGG+AGG - chr8_1:89735040-89735059 Msa1224670:three_prime_UTR 45.0%
TAGTCGTCAATTGGGAACGA+TGG + chr8_1:89735120-89735139 None:intergenic 45.0%
GAGCTGCTTAGTCGTCAATT+GGG + chr8_1:89735128-89735147 None:intergenic 45.0%
! AGAGGCATGTGAATCTGCTT+CGG + chr8_1:89735204-89735223 None:intergenic 45.0%
! CGCTTGGTTATTGTTGGCTA+GGG + chr8_1:89735372-89735391 None:intergenic 45.0%
! TCGCTTGGTTATTGTTGGCT+AGG + chr8_1:89735373-89735392 None:intergenic 45.0%
TCCATTGCTGTATGCACTTC+GGG - chr8_1:89736400-89736419 Msa1224670:intron 45.0%
! GGTGATCAGCCTGATTTTGA+TGG - chr8_1:89736479-89736498 Msa1224670:intron 45.0%
! GATGGCTCTTTGAAGAAGGA+AGG - chr8_1:89736497-89736516 Msa1224670:intron 45.0%
CGCCTTACTAACATACAGCA+TGG + chr8_1:89736678-89736697 None:intergenic 45.0%
TTAATCACTCAGGTGCCAAG+GGG + chr8_1:89736732-89736751 None:intergenic 45.0%
GGTGGTAGAGGAAAACTAAG+TGG - chr8_1:89735037-89735056 Msa1224670:three_prime_UTR 45.0%
GGTAGAGGAAAACTAAGTGG+AGG - chr8_1:89735040-89735059 Msa1224670:three_prime_UTR 45.0%
TAGTCGTCAATTGGGAACGA+TGG + chr8_1:89735120-89735139 None:intergenic 45.0%
GAGCTGCTTAGTCGTCAATT+GGG + chr8_1:89735128-89735147 None:intergenic 45.0%
! AGAGGCATGTGAATCTGCTT+CGG + chr8_1:89735204-89735223 None:intergenic 45.0%
! CGCTTGGTTATTGTTGGCTA+GGG + chr8_1:89735372-89735391 None:intergenic 45.0%
! TCGCTTGGTTATTGTTGGCT+AGG + chr8_1:89735373-89735392 None:intergenic 45.0%
TCCATTGCTGTATGCACTTC+GGG - chr8_1:89736400-89736419 Msa1224670:intron 45.0%
! GGTGATCAGCCTGATTTTGA+TGG - chr8_1:89736479-89736498 Msa1224670:intron 45.0%
! GATGGCTCTTTGAAGAAGGA+AGG - chr8_1:89736497-89736516 Msa1224670:intron 45.0%
CGCCTTACTAACATACAGCA+TGG + chr8_1:89736678-89736697 None:intergenic 45.0%
TTAATCACTCAGGTGCCAAG+GGG + chr8_1:89736732-89736751 None:intergenic 45.0%
!! TCTAGAGTTGGTGTGTGGGA+TGG - chr8_1:89735016-89735035 Msa1224670:three_prime_UTR 50.0%
TTGAATACGGGACTCCTCCT+AGG + chr8_1:89735081-89735100 None:intergenic 50.0%
AACGATGGCGTGACCTGATT+AGG + chr8_1:89735105-89735124 None:intergenic 50.0%
CGAGCTGCTTAGTCGTCAAT+TGG + chr8_1:89735129-89735148 None:intergenic 50.0%
GCATGTGAATCTGCTTCGGT+TGG + chr8_1:89735200-89735219 None:intergenic 50.0%
AAAAGACGAGAAGAGCTGGG+AGG - chr8_1:89736088-89736107 Msa1224670:intron 50.0%
TTTGGGTGGGGTAGATGGTT+TGG - chr8_1:89736145-89736164 Msa1224670:intron 50.0%
!! ATGGATTGATGATGGCAGCG+AGG + chr8_1:89736385-89736404 None:intergenic 50.0%
CCATTGCTGTATGCACTTCG+GGG - chr8_1:89736401-89736420 Msa1224670:intron 50.0%
! CGGGGAGTGAGAAATGGATT+TGG - chr8_1:89736419-89736438 Msa1224670:intron 50.0%
!! TCTAGAGTTGGTGTGTGGGA+TGG - chr8_1:89735016-89735035 Msa1224670:three_prime_UTR 50.0%
TTGAATACGGGACTCCTCCT+AGG + chr8_1:89735081-89735100 None:intergenic 50.0%
AACGATGGCGTGACCTGATT+AGG + chr8_1:89735105-89735124 None:intergenic 50.0%
CGAGCTGCTTAGTCGTCAAT+TGG + chr8_1:89735129-89735148 None:intergenic 50.0%
GCATGTGAATCTGCTTCGGT+TGG + chr8_1:89735200-89735219 None:intergenic 50.0%
AAAAGACGAGAAGAGCTGGG+AGG - chr8_1:89736088-89736107 Msa1224670:intron 50.0%
TTTGGGTGGGGTAGATGGTT+TGG - chr8_1:89736145-89736164 Msa1224670:intron 50.0%
!! ATGGATTGATGATGGCAGCG+AGG + chr8_1:89736385-89736404 None:intergenic 50.0%
CCATTGCTGTATGCACTTCG+GGG - chr8_1:89736401-89736420 Msa1224670:intron 50.0%
! CGGGGAGTGAGAAATGGATT+TGG - chr8_1:89736419-89736438 Msa1224670:intron 50.0%
!! AGAGTTGGTGTGTGGGATGG+TGG - chr8_1:89735019-89735038 Msa1224670:three_prime_UTR 55.0%
!! GTGCTGGAGGAGGTTGGTTT+GGG - chr8_1:89736128-89736147 Msa1224670:intron 55.0%
!! TGGAGGAGGTTGGTTTGGGT+GGG - chr8_1:89736132-89736151 Msa1224670:intron 55.0%
!! GTTGGTTTGGGTGGGGTAGA+TGG - chr8_1:89736140-89736159 Msa1224670:intron 55.0%
CCCCGAAGTGCATACAGCAA+TGG + chr8_1:89736404-89736423 None:intergenic 55.0%
GCACTTCGGGGAGTGAGAAA+TGG - chr8_1:89736413-89736432 Msa1224670:intron 55.0%
!! AGAGTTGGTGTGTGGGATGG+TGG - chr8_1:89735019-89735038 Msa1224670:three_prime_UTR 55.0%
!! GTGCTGGAGGAGGTTGGTTT+GGG - chr8_1:89736128-89736147 Msa1224670:intron 55.0%
!! TGGAGGAGGTTGGTTTGGGT+GGG - chr8_1:89736132-89736151 Msa1224670:intron 55.0%
!! GTTGGTTTGGGTGGGGTAGA+TGG - chr8_1:89736140-89736159 Msa1224670:intron 55.0%
CCCCGAAGTGCATACAGCAA+TGG + chr8_1:89736404-89736423 None:intergenic 55.0%
GCACTTCGGGGAGTGAGAAA+TGG - chr8_1:89736413-89736432 Msa1224670:intron 55.0%
! GGTGTGTGGGATGGTGGTAG+AGG - chr8_1:89735025-89735044 Msa1224670:three_prime_UTR 60.0%
AGACGAGAAGAGCTGGGAGG+CGG - chr8_1:89736091-89736110 Msa1224670:intron 60.0%
! GGTGCTGGAGGAGGTTGGTT+TGG - chr8_1:89736127-89736146 Msa1224670:intron 60.0%
!! CTGGAGGAGGTTGGTTTGGG+TGG - chr8_1:89736131-89736150 Msa1224670:intron 60.0%
!! GGAGGAGGTTGGTTTGGGTG+GGG - chr8_1:89736133-89736152 Msa1224670:intron 60.0%
! GGTGGGGTAGATGGTTTGGC+TGG - chr8_1:89736149-89736168 Msa1224670:intron 60.0%
! GGTGTGTGGGATGGTGGTAG+AGG - chr8_1:89735025-89735044 Msa1224670:three_prime_UTR 60.0%
AGACGAGAAGAGCTGGGAGG+CGG - chr8_1:89736091-89736110 Msa1224670:intron 60.0%
! GGTGCTGGAGGAGGTTGGTT+TGG - chr8_1:89736127-89736146 Msa1224670:intron 60.0%
!! CTGGAGGAGGTTGGTTTGGG+TGG - chr8_1:89736131-89736150 Msa1224670:intron 60.0%
!! GGAGGAGGTTGGTTTGGGTG+GGG - chr8_1:89736133-89736152 Msa1224670:intron 60.0%
! GGTGGGGTAGATGGTTTGGC+TGG - chr8_1:89736149-89736168 Msa1224670:intron 60.0%
CGAGAAGAGCTGGGAGGCGG+AGG - chr8_1:89736094-89736113 Msa1224670:intron 70.0%
CTGGGAGGCGGAGGTGACAG+CGG - chr8_1:89736103-89736122 Msa1224670:intron 70.0%
CGAGAAGAGCTGGGAGGCGG+AGG - chr8_1:89736094-89736113 Msa1224670:intron 70.0%
CTGGGAGGCGGAGGTGACAG+CGG - chr8_1:89736103-89736122 Msa1224670:intron 70.0%
GGAGGCGGAGGTGACAGCGG+CGG - chr8_1:89736106-89736125 Msa1224670:intron 75.0%
GGAGGTGACAGCGGCGGTGC+TGG - chr8_1:89736112-89736131 Msa1224670:intron 75.0%
! GGTGACAGCGGCGGTGCTGG+AGG - chr8_1:89736115-89736134 Msa1224670:intron 75.0%
! GACAGCGGCGGTGCTGGAGG+AGG - chr8_1:89736118-89736137 Msa1224670:intron 75.0%
! GCGGCGGTGCTGGAGGAGGT+TGG - chr8_1:89736122-89736141 Msa1224670:intron 75.0%
GGAGGCGGAGGTGACAGCGG+CGG - chr8_1:89736106-89736125 Msa1224670:intron 75.0%
GGAGGTGACAGCGGCGGTGC+TGG - chr8_1:89736112-89736131 Msa1224670:intron 75.0%
! GGTGACAGCGGCGGTGCTGG+AGG - chr8_1:89736115-89736134 Msa1224670:intron 75.0%
! GACAGCGGCGGTGCTGGAGG+AGG - chr8_1:89736118-89736137 Msa1224670:intron 75.0%
! GCGGCGGTGCTGGAGGAGGT+TGG - chr8_1:89736122-89736141 Msa1224670:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 89735015 89736875 89735015 ID=Msa1224670;Name=Msa1224670
chr8_1 mRNA 89735015 89736875 89735015 ID=Msa1224670-mRNA-1;Parent=Msa1224670;Name=Msa1224670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=49|1|1|1|1|1|3|301|210
chr8_1 exon 89735015 89735537 89735015 ID=Msa1224670-mRNA-1:exon:32573;Parent=Msa1224670-mRNA-1
chr8_1 exon 89735650 89735877 89735650 ID=Msa1224670-mRNA-1:exon:32572;Parent=Msa1224670-mRNA-1
chr8_1 exon 89736644 89736875 89736644 ID=Msa1224670-mRNA-1:exon:32571;Parent=Msa1224670-mRNA-1
chr8_1 five_prime_UTR 89736827 89736875 89736827 ID=Msa1224670-mRNA-1:five_prime_utr;Parent=Msa1224670-mRNA-1
chr8_1 CDS 89736644 89736826 89736644 ID=Msa1224670-mRNA-1:cds;Parent=Msa1224670-mRNA-1
chr8_1 CDS 89735650 89735877 89735650 ID=Msa1224670-mRNA-1:cds;Parent=Msa1224670-mRNA-1
chr8_1 CDS 89735316 89735537 89735316 ID=Msa1224670-mRNA-1:cds;Parent=Msa1224670-mRNA-1
chr8_1 three_prime_UTR 89735015 89735315 89735015 ID=Msa1224670-mRNA-1:three_prime_utr;Parent=Msa1224670-mRNA-1
Gene Sequence

>Msa1224670

ATGGAAATTGTAAACCTAGGAGGAGTCCCGTATTCAATCCTAATCAGGTCACGCCATCGTTCCCAATTGACGACTAAGCAGCTCGACTCTTCCGTTGATGAAAAATGGAGTCGCTTACAGCACAAACTCAACACCAACCGAAGCAGATTCACATGCCTCTTCTCAGACAACAACAAAAGAGAGGATCAAGCTAGAAAAGCATTAGAAGGTGCATTAAGTGGGAAGAAAATTGAATTTGACAAGTGGGACAAAGAAATCAAAAGACGAGAAGAGCTGGGAGGCGGAGGTGACAGCGGCGGTGCTGGAGGAGGTTGGTTTGGGTGGGGTAGATGGTTTGGCTGGTCTAATGATGATAATTTTTGGCAAGAAGCAAAACAAGCTAGTCTTACTATACTTGGCATCGTTCTCATATATATCCTAGTTGCAAAAGGTGATTTGATCCTCGCTGCCATCATCAATCCATTGCTGTATGCACTTCGGGGAGTGAGAAATGGATTTGGTCTCGCAACATCACAAGTCTTGAAAAATACTTCTAACGGTGATCAGCCTGATTTTGATGGCTCTTTGAAGAAGGAAGGCTACAAAAGTGCTTCTGCTAAAGAGAGCGTTGTAAGAAAATGGGGTAGTGATTAG

Protein sequence

>Msa1224670

MEIVNLGGVPYSILIRSRHRSQLTTKQLDSSVDEKWSRLQHKLNTNRSRFTCLFSDNNKREDQARKALEGALSGKKIEFDKWDKEIKRREELGGGGDSGGAGGGWFGWGRWFGWSNDDNFWQEAKQASLTILGIVLIYILVAKGDLILAAIINPLLYALRGVRNGFGLATSQVLKNTSNGDQPDFDGSLKKEGYKSASAKESVVRKWGSD*