AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0411520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0411520 MtrunA17_Chr3g0102791 95.092 163 7 1 1 162 1 163 1.97e-86 250
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0411520 AT1G56200.2 61.417 127 42 3 36 160 29 150 1.82e-20 82.8
Msa0411520 AT1G56200.1 61.417 127 42 3 36 160 32 153 1.85e-20 82.8
Msa0411520 AT1G30475.3 68.182 88 26 1 67 152 73 160 2.30e-18 77.4
Msa0411520 AT1G30475.2 68.182 88 26 1 67 152 73 160 2.30e-18 77.4
Msa0411520 AT1G30475.1 68.182 88 26 1 67 152 102 189 2.62e-18 78.2

Find 78 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGATATGGTTGCGAAAT+TGG 0.106467 3_2:-53780178 None:intergenic
TCATTTACCTGGTGGTAATT+TGG 0.111148 3_2:-53782327 None:intergenic
TTACCAATAATGACAATATT+TGG 0.205763 3_2:-53784476 None:intergenic
GGTCGAATTATGGATGAATT+TGG 0.218500 3_2:-53780156 None:intergenic
CATTTACCTGGTGGTAATTT+GGG 0.261244 3_2:-53782326 None:intergenic
TGCGAAATTGGGTCGAATTA+TGG 0.278971 3_2:-53780166 None:intergenic
AAGACGAAGGTTACGGTTAC+AGG 0.291277 3_2:+53784223 Msa0411520:CDS
TCCTCTTCCAAACCATTGTT+AGG 0.313054 3_2:+53780108 Msa0411520:five_prime_UTR
ATTTCAGAGACCTTGCAAAT+TGG 0.327753 3_2:-53780048 None:intergenic
GGAGGTGGAGGCAACTGGTC+TGG 0.349107 3_2:+53784141 Msa0411520:CDS
TATAATATGTGCTGCAGCTT+TGG 0.349585 3_2:+53783273 Msa0411520:CDS
TTGAAACCCTAACAATGGTT+TGG 0.393778 3_2:-53780115 None:intergenic
CCAACAATTACCCATCTTCC+AGG 0.394142 3_2:+53783914 Msa0411520:CDS
GGATAGCTTTAGAAGCAGTT+TGG 0.409424 3_2:-53780078 None:intergenic
TATGATATGGTTGCGAAATT+GGG 0.410832 3_2:-53780177 None:intergenic
CCTGGAAGATGGGTAATTGT+TGG 0.418823 3_2:-53783914 None:intergenic
TAACCGGAGATGGCGGTGAT+AGG 0.419295 3_2:+53784248 Msa0411520:exon
GAGGTGGAGGTGGAGGCAAC+TGG 0.422662 3_2:+53784136 Msa0411520:CDS
CATAGTACTGTAGAATATAT+TGG 0.427784 3_2:+53784330 Msa0411520:three_prime_UTR
TTAACAGTCCGTAGTCCTCT+TGG 0.444264 3_2:-53783181 None:intergenic
GTAGAATATATTGGTCTGAC+AGG 0.451801 3_2:+53784339 Msa0411520:three_prime_UTR
CCTCTTCCAAACCATTGTTA+GGG 0.453171 3_2:+53780109 Msa0411520:five_prime_UTR
TTCCACCATCATCAATTTGT+GGG 0.456713 3_2:-53784074 None:intergenic
GTCAACAATTACCTGGAAGA+TGG 0.464114 3_2:-53783925 None:intergenic
TTGCCTATCACCGCCATCTC+CGG 0.467540 3_2:-53784251 None:intergenic
GTACCACGCGGAATCGTTGA+TGG 0.480630 3_2:-53780233 None:intergenic
CAAATTGATGATGGTGGAAG+TGG 0.481050 3_2:+53784078 Msa0411520:CDS
GTTACGGTTACAGGGATAAC+CGG 0.483400 3_2:+53784232 Msa0411520:CDS
GAAAGTGAAGACGAAGGTTA+CGG 0.496218 3_2:+53784216 Msa0411520:CDS
GGTGGAGGCAACTGGTCTGG+TGG 0.503674 3_2:+53784144 Msa0411520:CDS
TATTCTACAGTACTATGATA+AGG 0.514912 3_2:-53784324 None:intergenic
ATGAGCCGAAAACTATGATA+TGG 0.515263 3_2:-53780190 None:intergenic
CTCGTGATGATGATGATGGC+GGG 0.516182 3_2:+53784109 Msa0411520:CDS
CCCTAACAATGGTTTGGAAG+AGG 0.519784 3_2:-53780109 None:intergenic
CTTCCACCATCATCAATTTG+TGG 0.526409 3_2:-53784075 None:intergenic
TCTCAAAATTTCTCCGTGGA+AGG 0.526510 3_2:+53784427 Msa0411520:three_prime_UTR
TTCCGCCTGCACACCAATGT+TGG 0.528693 3_2:+53782280 Msa0411520:exon
AGGGTTTCAAATTTCTCACT+CGG 0.531778 3_2:+53780128 Msa0411520:five_prime_UTR
AGTAGCCAACATTGGTGTGC+AGG 0.534104 3_2:-53782285 None:intergenic
TCAACAATTACCTGGAAGAT+GGG 0.540469 3_2:-53783924 None:intergenic
TTAAATTTCCAAGAGGACTA+CGG 0.552642 3_2:+53783173 Msa0411520:CDS
ACACAGTTTCCACATGGTAG+AGG 0.560771 3_2:+53783226 Msa0411520:CDS
CGTGATGATGATGATGGCGG+GGG 0.562407 3_2:+53784111 Msa0411520:CDS
ATCGTTGATGGATTACGATA+CGG 0.566139 3_2:-53780221 None:intergenic
AAGGATGTGGTTCATGAGCA+TGG 0.566386 3_2:-53784639 None:intergenic
TAGAGGAACTCGTTCTACTC+AGG 0.576586 3_2:+53783243 Msa0411520:CDS
GAAATTTGAAACCCTAACAA+TGG 0.577367 3_2:-53780120 None:intergenic
AAGTCCCCACAAATTGATGA+TGG 0.581883 3_2:+53784069 Msa0411520:CDS
AGATATGGTGCCAATTTGCA+AGG 0.603964 3_2:+53780038 None:intergenic
TCAGAAATGTGTGAAGGATG+TGG 0.604745 3_2:-53784652 None:intergenic
GGTTTGGAAGAGGAAGATGA+TGG 0.604828 3_2:-53780099 None:intergenic
TCCACCATCATCAATTTGTG+GGG 0.604881 3_2:-53784073 None:intergenic
AGCCAACATTGGTGTGCAGG+CGG 0.609794 3_2:-53782282 None:intergenic
TCCCCACAAATTGATGATGG+TGG 0.613798 3_2:+53784072 Msa0411520:CDS
AGACGAAGGTTACGGTTACA+GGG 0.621370 3_2:+53784224 Msa0411520:CDS
TCTACAGTTAAATTTCCAAG+AGG 0.623564 3_2:+53783166 Msa0411520:CDS
CCGCCTCGTGATGATGATGA+TGG 0.624527 3_2:+53784105 Msa0411520:CDS
TCGTGATGATGATGATGGCG+GGG 0.630213 3_2:+53784110 Msa0411520:CDS
GGCCACTGTGTGGAAGAGAA+TGG 0.636980 3_2:+53783139 Msa0411520:CDS
AGGATGTGGTTCATGAGCAT+GGG 0.642509 3_2:-53784638 None:intergenic
TCTTTGCCCAAATTACCACC+AGG 0.643884 3_2:+53782320 Msa0411520:CDS
GTGTGCACAGTGAGAAGAGG+TGG 0.650924 3_2:+53783118 Msa0411520:intron
TTTGTGTGCACAGTGAGAAG+AGG 0.656598 3_2:+53783115 Msa0411520:intron
CCTCGTGATGATGATGATGG+CGG 0.657157 3_2:+53784108 Msa0411520:CDS
GCAAATTCAGAAATGTGTGA+AGG 0.657903 3_2:-53784658 None:intergenic
ACTGCACTAGTAGCCAACAT+TGG 0.665642 3_2:-53782293 None:intergenic
CCGCCATCATCATCATCACG+AGG 0.666501 3_2:-53784108 None:intergenic
TAGAATATATTGGTCTGACA+GGG 0.678545 3_2:+53784340 Msa0411520:three_prime_UTR
ACAGGGATAACCGGAGATGG+CGG 0.687017 3_2:+53784241 Msa0411520:CDS
AAACTCTCAAAATTTCTCCG+TGG 0.687039 3_2:+53784423 Msa0411520:three_prime_UTR
GAGAAGAGGTGGCCACTGTG+TGG 0.687254 3_2:+53783129 Msa0411520:CDS
GAACGAGTTCCTCTACCATG+TGG 0.701280 3_2:-53783235 None:intergenic
GACAAAGAAAGTGAAGACGA+AGG 0.702140 3_2:+53784210 Msa0411520:CDS
AGTTGTACACAGTTTCCACA+TGG 0.705945 3_2:+53783220 Msa0411520:CDS
GTTACAGGGATAACCGGAGA+TGG 0.708122 3_2:+53784238 Msa0411520:CDS
CCATCATCATCATCACGAGG+CGG 0.728539 3_2:-53784105 None:intergenic
CACCATTCTCTTCCACACAG+TGG 0.743076 3_2:-53783141 None:intergenic
AATCCATCAACGATTCCGCG+TGG 0.764571 3_2:+53780230 Msa0411520:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAATTTAATAAATGATT+TGG + chr3_2:53780616-53780635 Msa0411520:intron 10.0%
!!! TCTTAATATAATTTTAGATT+AGG + chr3_2:53781224-53781243 Msa0411520:intron 10.0%
!!! TTAATTTTTTAATGCACTTT+TGG + chr3_2:53780541-53780560 Msa0411520:intron 15.0%
!! ATTATGATATTATCATATTC+TGG + chr3_2:53781172-53781191 Msa0411520:intron 15.0%
!!! CAGTTTTTCTATTTTAAAAT+AGG - chr3_2:53781480-53781499 None:intergenic 15.0%
!! TTATGATTACTGTATAAATT+GGG + chr3_2:53781876-53781895 Msa0411520:intron 15.0%
!!! AATTGATAACAAATTCTAAA+AGG - chr3_2:53782160-53782179 None:intergenic 15.0%
!!! ATTTTATCTTTTATCTTCTT+CGG + chr3_2:53782205-53782224 Msa0411520:intron 15.0%
!! TAAATTGAGACATAATATTT+AGG + chr3_2:53782379-53782398 Msa0411520:intron 15.0%
!! ATATACGGATATTAAAGAAA+TGG - chr3_2:53780273-53780292 None:intergenic 20.0%
!!! TTTTTTGTAGTTTGTAGAAA+TGG + chr3_2:53780404-53780423 Msa0411520:intron 20.0%
!!! TTTTTGTAGTTTGTAGAAAT+GGG + chr3_2:53780405-53780424 Msa0411520:intron 20.0%
!!! TTTGCATAAGATTTTCATAT+GGG + chr3_2:53780436-53780455 Msa0411520:intron 20.0%
!!! GAAGTTTACATTTTTATTGA+AGG + chr3_2:53780569-53780588 Msa0411520:intron 20.0%
!!! TTTTTATTGAAGGATTTTGT+TGG + chr3_2:53780579-53780598 Msa0411520:intron 20.0%
!!! TTTTATTGAAGGATTTTGTT+GGG + chr3_2:53780580-53780599 Msa0411520:intron 20.0%
!! ACATATAATAGAAATGTGAA+TGG - chr3_2:53781003-53781022 None:intergenic 20.0%
!! AAACTAAAAGATTTGTGAAT+GGG - chr3_2:53781041-53781060 None:intergenic 20.0%
!! AAAACTAAAAGATTTGTGAA+TGG - chr3_2:53781042-53781061 None:intergenic 20.0%
!!! AAATCTTTTAGTTTTCTTTC+TGG + chr3_2:53781047-53781066 Msa0411520:intron 20.0%
!!! AATCTTTTAGTTTTCTTTCT+GGG + chr3_2:53781048-53781067 Msa0411520:intron 20.0%
!! TTGAATATTTATTGTGTTGA+TGG + chr3_2:53781147-53781166 Msa0411520:intron 20.0%
!! ATATTAAGAAAAACTGTACA+CGG - chr3_2:53781213-53781232 None:intergenic 20.0%
!!! ATTTTAAAATAGGTCATGTT+TGG - chr3_2:53781470-53781489 None:intergenic 20.0%
!! ATTGAAAGGATTACATATTA+CGG - chr3_2:53781533-53781552 None:intergenic 20.0%
!! GTTATGATTACTGTATAAAT+TGG + chr3_2:53781875-53781894 Msa0411520:intron 20.0%
!! TGCATTGAAAGTAAAATTTA+GGG - chr3_2:53781961-53781980 None:intergenic 20.0%
!! TTGCATTGAAAGTAAAATTT+AGG - chr3_2:53781962-53781981 None:intergenic 20.0%
!!! CTTTCTTTTTACATCTTTAT+TGG + chr3_2:53782046-53782065 Msa0411520:intron 20.0%
!! AGATAAAATATCTAGTATGT+TGG - chr3_2:53782194-53782213 None:intergenic 20.0%
!!! TATCTATAACGATTTTTTCA+AGG - chr3_2:53782488-53782507 None:intergenic 20.0%
!! ATAACTTGAAATTTCACATA+TGG + chr3_2:53783519-53783538 Msa0411520:intron 20.0%
!! TAGAAAAACATTAAACATTC+AGG + chr3_2:53783716-53783735 Msa0411520:intron 20.0%
!! TTAGTAATACATGAAATGAA+GGG - chr3_2:53783987-53784006 None:intergenic 20.0%
!! ATTAGTAATACATGAAATGA+AGG - chr3_2:53783988-53784007 None:intergenic 20.0%
!! TTACCAATAATGACAATATT+TGG - chr3_2:53784479-53784498 None:intergenic 20.0%
!!! GTTTTAATTGTTGAATTCAT+TGG - chr3_2:53784613-53784632 None:intergenic 20.0%
!!! CAATCATTGAAGTTTTATGA+TGG + chr3_2:53780356-53780375 Msa0411520:intron 25.0%
! TGTTATGTATGTTGAAAGTT+TGG + chr3_2:53780380-53780399 Msa0411520:intron 25.0%
!! GTTTGCATAAGATTTTCATA+TGG + chr3_2:53780435-53780454 Msa0411520:intron 25.0%
! TAATTCTAATCACATTCGTT+TGG - chr3_2:53780480-53780499 None:intergenic 25.0%
! ATTATGCACAGACTAATTAA+AGG - chr3_2:53780905-53780924 None:intergenic 25.0%
! AACTAAAAGATTTGTGAATG+GGG - chr3_2:53781040-53781059 None:intergenic 25.0%
! TTTAGTAAACATGACTATTG+TGG + chr3_2:53781099-53781118 Msa0411520:intron 25.0%
! TGATATTATCATATTCTGGT+TGG + chr3_2:53781176-53781195 Msa0411520:intron 25.0%
!! GGGAAAAGAATAGAATTTTA+GGG + chr3_2:53781406-53781425 Msa0411520:intron 25.0%
! TTACATATTACGGTGAATAT+AGG - chr3_2:53781523-53781542 None:intergenic 25.0%
! AGCATATCAAACATATTGAA+AGG - chr3_2:53781547-53781566 None:intergenic 25.0%
!!! TATTTCACATAGTGGATTTT+CGG + chr3_2:53781657-53781676 Msa0411520:intron 25.0%
! GGATTTATTGGTAAACATTT+CGG + chr3_2:53781853-53781872 Msa0411520:intron 25.0%
! GCATTGAAAGTAAAATTTAG+GGG - chr3_2:53781960-53781979 None:intergenic 25.0%
! AACAAACTAAAAGTTAAGAC+TGG - chr3_2:53782012-53782031 None:intergenic 25.0%
!!! AGTCTTAACTTTTAGTTTGT+TGG + chr3_2:53782011-53782030 Msa0411520:intron 25.0%
!! GATAACAAATTCTAAAAGGT+GGG - chr3_2:53782156-53782175 None:intergenic 25.0%
!! TGATAACAAATTCTAAAAGG+TGG - chr3_2:53782157-53782176 None:intergenic 25.0%
!! ATCCCTTTTATGCTTTATAT+AGG + chr3_2:53782542-53782561 Msa0411520:intron 25.0%
! TGCCTATATAAAGCATAAAA+GGG - chr3_2:53782547-53782566 None:intergenic 25.0%
! ATGCCTATATAAAGCATAAA+AGG - chr3_2:53782548-53782567 None:intergenic 25.0%
!! TCATAACTGAACACTTTTAT+TGG - chr3_2:53782587-53782606 None:intergenic 25.0%
! TTAAATTCACGCACAATTTA+AGG + chr3_2:53782857-53782876 Msa0411520:intron 25.0%
!! TTTTTATAACCCATACAACT+AGG - chr3_2:53782922-53782941 None:intergenic 25.0%
!! AGTTGTATGGGTTATAAAAA+TGG + chr3_2:53782922-53782941 Msa0411520:intron 25.0%
! ATAGACTATAAGAAGAGTAA+AGG - chr3_2:53783352-53783371 None:intergenic 25.0%
!! GTTGTCTAACCATAAAATTT+TGG + chr3_2:53783435-53783454 Msa0411520:intron 25.0%
!!! AGCTGTTTTCCAAAATTTTA+TGG - chr3_2:53783447-53783466 None:intergenic 25.0%
!!! TTATGTCATTTTTGGAACAT+TGG + chr3_2:53783491-53783510 Msa0411520:intron 25.0%
! GAAATTTCACATATGGTTTA+TGG + chr3_2:53783526-53783545 Msa0411520:intron 25.0%
! AATGTATGAAATTTATAGCC+TGG - chr3_2:53783576-53783595 None:intergenic 25.0%
! ACAAAAGATACCAAAAAACA+AGG - chr3_2:53783636-53783655 None:intergenic 25.0%
! TATTCTACAGTACTATGATA+AGG - chr3_2:53784327-53784346 None:intergenic 25.0%
! CATAGTACTGTAGAATATAT+TGG + chr3_2:53784330-53784349 Msa0411520:three_prime_UTR 25.0%
!!! AGAAATTTTGAGAGTTTAGT+TGG - chr3_2:53784420-53784439 None:intergenic 25.0%
! GTACCAAATATTGTCATTAT+TGG + chr3_2:53784473-53784492 Msa0411520:intron 25.0%
! TTGTCATTATTGGTAAGATT+TGG + chr3_2:53784483-53784502 Msa0411520:intron 25.0%
! GTTCAAACTGAAAAATAGAT+CGG - chr3_2:53784569-53784588 None:intergenic 25.0%
!!! CTATTTTTCAGTTTGAACAT+AGG + chr3_2:53784571-53784590 Msa0411520:intron 25.0%
! GAAATTTGAAACCCTAACAA+TGG - chr3_2:53780123-53780142 None:intergenic 30.0%
TATGATATGGTTGCGAAATT+GGG - chr3_2:53780180-53780199 None:intergenic 30.0%
TTGAACAACACAACAACAAA+GGG - chr3_2:53780333-53780352 None:intergenic 30.0%
ATTGAACAACACAACAACAA+AGG - chr3_2:53780334-53780353 None:intergenic 30.0%
CCAAGTTTAGTTATGGAAAA+TGG - chr3_2:53780710-53780729 None:intergenic 30.0%
! CCATTTTCCATAACTAAACT+TGG + chr3_2:53780707-53780726 Msa0411520:intron 30.0%
TGTATGACCAAGTTTAGTTA+TGG - chr3_2:53780717-53780736 None:intergenic 30.0%
! AGCAAAGTATCTTATCTAGA+AGG - chr3_2:53780930-53780949 None:intergenic 30.0%
TTATCAGTGTTGTCAAATAG+CGG + chr3_2:53781262-53781281 Msa0411520:intron 30.0%
ATTGTCCTACTAGAAAAACT+CGG - chr3_2:53781340-53781359 None:intergenic 30.0%
! CGGGAAAAGAATAGAATTTT+AGG + chr3_2:53781405-53781424 Msa0411520:intron 30.0%
AAAAAAAACACGGAGAATAG+AGG - chr3_2:53781573-53781592 None:intergenic 30.0%
AAGCAATTAGTAATCTGTGT+TGG + chr3_2:53781913-53781932 Msa0411520:intron 30.0%
! AATTAGTAATCTGTGTTGGT+CGG + chr3_2:53781917-53781936 Msa0411520:intron 30.0%
TAGGTATGACAATCATCAAT+CGG + chr3_2:53782085-53782104 Msa0411520:intron 30.0%
TAACAGTGAATGCTAAGAAA+AGG - chr3_2:53782123-53782142 None:intergenic 30.0%
ATATCTAGTATGTTGGAACT+AGG - chr3_2:53782187-53782206 None:intergenic 30.0%
AGAAATTATCATTTACCTGG+TGG - chr3_2:53782338-53782357 None:intergenic 30.0%
GTCAGAAATTATCATTTACC+TGG - chr3_2:53782341-53782360 None:intergenic 30.0%
AGGCATAAGAAATATGAGTT+CGG + chr3_2:53782399-53782418 Msa0411520:intron 30.0%
AGATGGAAAATAAAAGTGAC+GGG - chr3_2:53782439-53782458 None:intergenic 30.0%
CAGATGGAAAATAAAAGTGA+CGG - chr3_2:53782440-53782459 None:intergenic 30.0%
! ATATTACCAGAAGTACAGAT+TGG + chr3_2:53782609-53782628 Msa0411520:intron 30.0%
! TATTACCAGAAGTACAGATT+GGG + chr3_2:53782610-53782629 Msa0411520:intron 30.0%
ATTGATTGCTATCTTATCCA+AGG + chr3_2:53782684-53782703 Msa0411520:intron 30.0%
TTTAACACAAATGTGCACAA+TGG - chr3_2:53782842-53782861 None:intergenic 30.0%
CAAAAACACAAAGATGCATA+TGG - chr3_2:53782892-53782911 None:intergenic 30.0%
! TTGTGTTTTTCCTAGTTGTA+TGG + chr3_2:53782909-53782928 Msa0411520:intron 30.0%
! TGTGTTTTTCCTAGTTGTAT+GGG + chr3_2:53782910-53782929 Msa0411520:intron 30.0%
TCTACAGTTAAATTTCCAAG+AGG + chr3_2:53783166-53783185 Msa0411520:CDS 30.0%
TTAAATTTCCAAGAGGACTA+CGG + chr3_2:53783173-53783192 Msa0411520:CDS 30.0%
TAGACAACATAATTCTTCAC+AGG - chr3_2:53783423-53783442 None:intergenic 30.0%
!!! GTGGTCATTTATGTCATTTT+TGG + chr3_2:53783483-53783502 Msa0411520:intron 30.0%
!!! GATTTGATGTCCTTGTTTTT+TGG + chr3_2:53783623-53783642 Msa0411520:intron 30.0%
TATTCTACCCAAGCATATAA+GGG - chr3_2:53783695-53783714 None:intergenic 30.0%
!! ACATTCAGGAGTTTTGATAT+TGG + chr3_2:53783730-53783749 Msa0411520:intron 30.0%
ATTACTAATGAATCCATCCA+AGG + chr3_2:53783999-53784018 Msa0411520:intron 30.0%
! TTGAATTCAACTTTCAGGTA+AGG + chr3_2:53784044-53784063 Msa0411520:intron 30.0%
!!! TCTGGTGGATTTTTCTTTTT+TGG + chr3_2:53784159-53784178 Msa0411520:CDS 30.0%
!! TTTGGATTTCTTGCTTTTCT+TGG + chr3_2:53784177-53784196 Msa0411520:CDS 30.0%
! TAGAATATATTGGTCTGACA+GGG + chr3_2:53784340-53784359 Msa0411520:three_prime_UTR 30.0%
!! ATATAAGCTTTTTCCTTCCA+CGG - chr3_2:53784443-53784462 None:intergenic 30.0%
! TTATTGGTAAGATTTGGTAG+TGG + chr3_2:53784489-53784508 Msa0411520:intron 30.0%
ATTTCAGAGACCTTGCAAAT+TGG - chr3_2:53780051-53780070 None:intergenic 35.0%
!!! TGCAAGGTCTCTGAAATTTT+TGG + chr3_2:53780054-53780073 Msa0411520:five_prime_UTR 35.0%
!!! GCAAGGTCTCTGAAATTTTT+GGG + chr3_2:53780055-53780074 Msa0411520:five_prime_UTR 35.0%
TTGAAACCCTAACAATGGTT+TGG - chr3_2:53780118-53780137 None:intergenic 35.0%
AGGGTTTCAAATTTCTCACT+CGG + chr3_2:53780128-53780147 Msa0411520:five_prime_UTR 35.0%
GGTCGAATTATGGATGAATT+TGG - chr3_2:53780159-53780178 None:intergenic 35.0%
CTATGATATGGTTGCGAAAT+TGG - chr3_2:53780181-53780200 None:intergenic 35.0%
! CGCAACCATATCATAGTTTT+CGG + chr3_2:53780185-53780204 Msa0411520:five_prime_UTR 35.0%
ATGAGCCGAAAACTATGATA+TGG - chr3_2:53780193-53780212 None:intergenic 35.0%
!! ATCGTTGATGGATTACGATA+CGG - chr3_2:53780224-53780243 None:intergenic 35.0%
! TGTAGTTTGTAGAAATGGGT+TGG + chr3_2:53780409-53780428 Msa0411520:intron 35.0%
TGCTAGAGAGTTTAGAAGAT+TGG + chr3_2:53780515-53780534 Msa0411520:intron 35.0%
! GGTCATACATGTGAGTTTTT+AGG + chr3_2:53780728-53780747 Msa0411520:intron 35.0%
AGTGATCTAGTCTAGTTGAT+AGG + chr3_2:53780754-53780773 Msa0411520:intron 35.0%
! ACTAATTAAAGGCCGAGTTT+TGG - chr3_2:53780894-53780913 None:intergenic 35.0%
! GGTTTGCTTAATTATGTACG+TGG + chr3_2:53781120-53781139 Msa0411520:intron 35.0%
! TCATATTCTGGTTGGAATGT+TGG + chr3_2:53781184-53781203 Msa0411520:intron 35.0%
TTACATCTGCTAGCAGAAAT+TGG - chr3_2:53781376-53781395 None:intergenic 35.0%
ATTTCTGCTAGCAGATGTAA+CGG + chr3_2:53781376-53781395 Msa0411520:intron 35.0%
TGAAATAGCAGGTAATGTTG+CGG - chr3_2:53781644-53781663 None:intergenic 35.0%
!! TTACCTGCTATTTCACATAG+TGG + chr3_2:53781649-53781668 Msa0411520:intron 35.0%
AATCCACTATGTGAAATAGC+AGG - chr3_2:53781655-53781674 None:intergenic 35.0%
TTTAGTCTAATGAAGCTCCA+TGG + chr3_2:53781724-53781743 Msa0411520:intron 35.0%
TTAGTCTAATGAAGCTCCAT+GGG + chr3_2:53781725-53781744 Msa0411520:intron 35.0%
TAAATCCAGTCGACAAAACA+AGG - chr3_2:53781840-53781859 None:intergenic 35.0%
!! GTTTTGTCGACTGGATTTAT+TGG + chr3_2:53781841-53781860 Msa0411520:intron 35.0%
TGGAAGTCTGTTGTAGAAAT+AGG + chr3_2:53782066-53782085 Msa0411520:intron 35.0%
AGGTATGACAATCATCAATC+GGG + chr3_2:53782086-53782105 Msa0411520:intron 35.0%
CATTTACCTGGTGGTAATTT+GGG - chr3_2:53782329-53782348 None:intergenic 35.0%
TCATTTACCTGGTGGTAATT+TGG - chr3_2:53782330-53782349 None:intergenic 35.0%
GATGGAAAATAAAAGTGACG+GGG - chr3_2:53782438-53782457 None:intergenic 35.0%
ATGTGTAAAACAGGATACAG+CGG - chr3_2:53782518-53782537 None:intergenic 35.0%
GGGATATCTATGTGTAAAAC+AGG - chr3_2:53782527-53782546 None:intergenic 35.0%
AGAACACACATCAAATTCAC+TGG - chr3_2:53782664-53782683 None:intergenic 35.0%
CAAACACATGCATTAATCCT+TGG - chr3_2:53782704-53782723 None:intergenic 35.0%
CAAGGATTAATGCATGTGTT+TGG + chr3_2:53782702-53782721 Msa0411520:intron 35.0%
! AATGTGTCAATTAAAAGCGC+GGG - chr3_2:53782731-53782750 None:intergenic 35.0%
GAATGTGTCAATTAAAAGCG+CGG - chr3_2:53782732-53782751 None:intergenic 35.0%
AGTTGACTGGATACTATTTG+AGG + chr3_2:53782790-53782809 Msa0411520:intron 35.0%
! GATACTATTTGAGGTGAATG+AGG + chr3_2:53782799-53782818 Msa0411520:intron 35.0%
AGAAAACCAAATGTGTCAGA+TGG - chr3_2:53783024-53783043 None:intergenic 35.0%
TATAATATGTGCTGCAGCTT+TGG + chr3_2:53783273-53783292 Msa0411520:CDS 35.0%
CAACATAATTCTTCACAGGT+CGG - chr3_2:53783419-53783438 None:intergenic 35.0%
ACAGCTTCATTACTCATTAG+AGG + chr3_2:53783461-53783480 Msa0411520:intron 35.0%
! AGAAGAGGACTTTTAAGCTT+AGG - chr3_2:53783666-53783685 None:intergenic 35.0%
GTATTCTACCCAAGCATATA+AGG - chr3_2:53783696-53783715 None:intergenic 35.0%
TTGCATTCTGCATATATCAG+AGG - chr3_2:53783853-53783872 None:intergenic 35.0%
TCAACAATTACCTGGAAGAT+GGG - chr3_2:53783927-53783946 None:intergenic 35.0%
TCATTCAGTCAACAATTACC+TGG - chr3_2:53783935-53783954 None:intergenic 35.0%
CTGAAAGTTGAATTCAACCA+TGG - chr3_2:53784041-53784060 None:intergenic 35.0%
CATGGTTGAATTCAACTTTC+AGG + chr3_2:53784039-53784058 Msa0411520:intron 35.0%
TTCCACCATCATCAATTTGT+GGG - chr3_2:53784077-53784096 None:intergenic 35.0%
! GTAGAATATATTGGTCTGAC+AGG + chr3_2:53784339-53784358 Msa0411520:three_prime_UTR 35.0%
AAACTCTCAAAATTTCTCCG+TGG + chr3_2:53784423-53784442 Msa0411520:three_prime_UTR 35.0%
!! AAGATTTGGTAGTGGAATTG+TGG + chr3_2:53784497-53784516 Msa0411520:intron 35.0%
TGGAATTGTGGTGATATTTG+TGG + chr3_2:53784509-53784528 Msa0411520:intron 35.0%
GCAAATTCAGAAATGTGTGA+AGG - chr3_2:53784661-53784680 None:intergenic 35.0%
!! GGATAGCTTTAGAAGCAGTT+TGG - chr3_2:53780081-53780100 None:intergenic 40.0%
TCCTCTTCCAAACCATTGTT+AGG + chr3_2:53780108-53780127 Msa0411520:five_prime_UTR 40.0%
CCTCTTCCAAACCATTGTTA+GGG + chr3_2:53780109-53780128 Msa0411520:five_prime_UTR 40.0%
TGCGAAATTGGGTCGAATTA+TGG - chr3_2:53780169-53780188 None:intergenic 40.0%
AAAATATGTAGCGTACCACG+CGG - chr3_2:53780248-53780267 None:intergenic 40.0%
!! AGTTTGTAGAAATGGGTTGG+TGG + chr3_2:53780412-53780431 Msa0411520:intron 40.0%
!! GTTTGTAGAAATGGGTTGGT+GGG + chr3_2:53780413-53780432 Msa0411520:intron 40.0%
! GCTTTAAACGCCTACGTAAA+AGG + chr3_2:53780796-53780815 Msa0411520:intron 40.0%
AAACGCCTACGTAAAAGGTT+AGG + chr3_2:53780801-53780820 Msa0411520:intron 40.0%
AACGCCTACGTAAAAGGTTA+GGG + chr3_2:53780802-53780821 Msa0411520:intron 40.0%
CTGCTGTTGAAACCAAAACT+CGG + chr3_2:53780879-53780898 Msa0411520:intron 40.0%
! TAGCGTTGTGGTTTTCATAG+TGG - chr3_2:53781316-53781335 None:intergenic 40.0%
!! GCTATCCGAGTTTTTCTAGT+AGG + chr3_2:53781332-53781351 Msa0411520:intron 40.0%
GCTAGCAGAAATTGGAATAG+CGG - chr3_2:53781368-53781387 None:intergenic 40.0%
GACTTATTTCAACCGCTATG+CGG + chr3_2:53781604-53781623 Msa0411520:intron 40.0%
AAATAGAAGAAGCCGCATAG+CGG - chr3_2:53781619-53781638 None:intergenic 40.0%
CAAGTACGTGTTATCACTAG+CGG - chr3_2:53781704-53781723 None:intergenic 40.0%
TAGTCTAATGAAGCTCCATG+GGG + chr3_2:53781726-53781745 Msa0411520:intron 40.0%
TTACTAATTGCTTGCGCACA+GGG - chr3_2:53781906-53781925 None:intergenic 40.0%
ATTACTAATTGCTTGCGCAC+AGG - chr3_2:53781907-53781926 None:intergenic 40.0%
ATGACAATCATCAATCGGGT+TGG + chr3_2:53782090-53782109 Msa0411520:intron 40.0%
TGACAATCATCAATCGGGTT+GGG + chr3_2:53782091-53782110 Msa0411520:intron 40.0%
!! GTATGTCACTTCAAGTTGAC+TGG + chr3_2:53782777-53782796 Msa0411520:intron 40.0%
! ATTTGAGGTGAATGAGGTGA+AGG + chr3_2:53782805-53782824 Msa0411520:intron 40.0%
AATACTGCCTTTAGCAGGAA+GGG - chr3_2:53782976-53782995 None:intergenic 40.0%
! GTATAGCAGGACAAGGATTT+TGG - chr3_2:53783002-53783021 None:intergenic 40.0%
AATGTGTCAGATGGTATAGC+AGG - chr3_2:53783015-53783034 None:intergenic 40.0%
GCTATACCATCTGACACATT+TGG + chr3_2:53783015-53783034 Msa0411520:intron 40.0%
AGTTGTACACAGTTTCCACA+TGG + chr3_2:53783220-53783239 Msa0411520:CDS 40.0%
GCTTCATTACTCATTAGAGG+TGG + chr3_2:53783464-53783483 Msa0411520:intron 40.0%
GGTTTATGGATTCTGACCTT+TGG + chr3_2:53783540-53783559 Msa0411520:intron 40.0%
GCTTAAAAGTCCTCTTCTTG+TGG + chr3_2:53783668-53783687 Msa0411520:intron 40.0%
ATATAAGGGACCACAAGAAG+AGG - chr3_2:53783681-53783700 None:intergenic 40.0%
TTGTGGTCCCTTATATGCTT+GGG + chr3_2:53783685-53783704 Msa0411520:intron 40.0%
GTCAACAATTACCTGGAAGA+TGG - chr3_2:53783928-53783947 None:intergenic 40.0%
AAGTCCCCACAAATTGATGA+TGG + chr3_2:53784069-53784088 Msa0411520:CDS 40.0%
TCCACCATCATCAATTTGTG+GGG - chr3_2:53784076-53784095 None:intergenic 40.0%
CTTCCACCATCATCAATTTG+TGG - chr3_2:53784078-53784097 None:intergenic 40.0%
!! CAAATTGATGATGGTGGAAG+TGG + chr3_2:53784078-53784097 Msa0411520:CDS 40.0%
GACAAAGAAAGTGAAGACGA+AGG + chr3_2:53784210-53784229 Msa0411520:CDS 40.0%
GAAAGTGAAGACGAAGGTTA+CGG + chr3_2:53784216-53784235 Msa0411520:CDS 40.0%
TCTCAAAATTTCTCCGTGGA+AGG + chr3_2:53784427-53784446 Msa0411520:three_prime_UTR 40.0%
TCAGAAATGTGTGAAGGATG+TGG - chr3_2:53784655-53784674 None:intergenic 40.0%
GGTTTGGAAGAGGAAGATGA+TGG - chr3_2:53780102-53780121 None:intergenic 45.0%
! CCCTAACAATGGTTTGGAAG+AGG - chr3_2:53780112-53780131 None:intergenic 45.0%
! CATGCCCTAACCTTTTACGT+AGG - chr3_2:53780809-53780828 None:intergenic 45.0%
TGCCAAAAACAACACCTTGC+CGG + chr3_2:53780838-53780857 Msa0411520:intron 45.0%
AAATACCAATAGAGCCGGCA+AGG - chr3_2:53780855-53780874 None:intergenic 45.0%
GCCAGAAATACCAATAGAGC+CGG - chr3_2:53780860-53780879 None:intergenic 45.0%
GAAAAACTCGGATAGCGTTG+TGG - chr3_2:53781328-53781347 None:intergenic 45.0%
AGCAGATGTAACGGCAATAG+CGG + chr3_2:53781385-53781404 Msa0411520:intron 45.0%
AGTCTAATGAAGCTCCATGG+GGG + chr3_2:53781727-53781746 Msa0411520:intron 45.0%
ATTCTCCAATACTTCCCCCA+TGG - chr3_2:53781744-53781763 None:intergenic 45.0%
!!! TGTCTCCTTGTTTTGTCGAC+TGG + chr3_2:53781832-53781851 Msa0411520:intron 45.0%
TACTAATTGCTTGCGCACAG+GGG - chr3_2:53781905-53781924 None:intergenic 45.0%
! TAGTAATCTGTGTTGGTCGG+TGG + chr3_2:53781920-53781939 Msa0411520:intron 45.0%
! GACAATCATCAATCGGGTTG+GGG + chr3_2:53782092-53782111 Msa0411520:intron 45.0%
!! ACAATCATCAATCGGGTTGG+GGG + chr3_2:53782093-53782112 Msa0411520:intron 45.0%
ACTGCACTAGTAGCCAACAT+TGG - chr3_2:53782296-53782315 None:intergenic 45.0%
TCTTTGCCCAAATTACCACC+AGG + chr3_2:53782320-53782339 Msa0411520:CDS 45.0%
GATTGCCCAATCTGTACTTC+TGG - chr3_2:53782618-53782637 None:intergenic 45.0%
CATCAAATTCACTGGCAGGA+AGG - chr3_2:53782656-53782675 None:intergenic 45.0%
CACACATCAAATTCACTGGC+AGG - chr3_2:53782660-53782679 None:intergenic 45.0%
GAAGGGATGGAATGGAATCA+AGG - chr3_2:53782959-53782978 None:intergenic 45.0%
TTTAGCAGGAAGGGATGGAA+TGG - chr3_2:53782967-53782986 None:intergenic 45.0%
ATTCCATCCCTTCCTGCTAA+AGG + chr3_2:53782966-53782985 Msa0411520:intron 45.0%
CAATACTGCCTTTAGCAGGA+AGG - chr3_2:53782977-53782996 None:intergenic 45.0%
GGATCAATACTGCCTTTAGC+AGG - chr3_2:53782981-53783000 None:intergenic 45.0%
TCAGATGGTATAGCAGGACA+AGG - chr3_2:53783009-53783028 None:intergenic 45.0%
TTTGTGTGCACAGTGAGAAG+AGG + chr3_2:53783115-53783134 Msa0411520:intron 45.0%
TTAACAGTCCGTAGTCCTCT+TGG - chr3_2:53783184-53783203 None:intergenic 45.0%
ACACAGTTTCCACATGGTAG+AGG + chr3_2:53783226-53783245 Msa0411520:CDS 45.0%
TAGAGGAACTCGTTCTACTC+AGG + chr3_2:53783243-53783262 Msa0411520:CDS 45.0%
CTTGTGGTCCCTTATATGCT+TGG + chr3_2:53783684-53783703 Msa0411520:intron 45.0%
CCTGGAAGATGGGTAATTGT+TGG - chr3_2:53783917-53783936 None:intergenic 45.0%
CCAACAATTACCCATCTTCC+AGG + chr3_2:53783914-53783933 Msa0411520:CDS 45.0%
TCCATCCAAGGATGCTCTAA+TGG + chr3_2:53784011-53784030 Msa0411520:intron 45.0%
!! TCCCCACAAATTGATGATGG+TGG + chr3_2:53784072-53784091 Msa0411520:CDS 45.0%
AAGACGAAGGTTACGGTTAC+AGG + chr3_2:53784223-53784242 Msa0411520:CDS 45.0%
AGACGAAGGTTACGGTTACA+GGG + chr3_2:53784224-53784243 Msa0411520:CDS 45.0%
GTTACGGTTACAGGGATAAC+CGG + chr3_2:53784232-53784251 Msa0411520:CDS 45.0%
AGGATGTGGTTCATGAGCAT+GGG - chr3_2:53784641-53784660 None:intergenic 45.0%
AAGGATGTGGTTCATGAGCA+TGG - chr3_2:53784642-53784661 None:intergenic 45.0%
!!! AAAAATTGAATTTTTATATA+CGG - chr3_2:53780288-53780307 None:intergenic 5.0%
!!! ATATAAAAATTCAATTTTTA+TGG + chr3_2:53780289-53780308 Msa0411520:intron 5.0%
!! ATTATATATTAAAAAAAACA+CGG - chr3_2:53781583-53781602 None:intergenic 5.0%
AATCCATCAACGATTCCGCG+TGG + chr3_2:53780230-53780249 Msa0411520:five_prime_UTR 50.0%
!!! AGCCGGCAAGGTGTTGTTTT+TGG - chr3_2:53780843-53780862 None:intergenic 50.0%
! GCCGGCTCTATTGGTATTTC+TGG + chr3_2:53780856-53780875 Msa0411520:intron 50.0%
GCAGATGTAACGGCAATAGC+GGG + chr3_2:53781386-53781405 Msa0411520:intron 50.0%
!! CACTAGCGGACTGCGTAAAA+CGG - chr3_2:53781690-53781709 None:intergenic 50.0%
! AAGCTCCATGGGGGAAGTAT+TGG + chr3_2:53781736-53781755 Msa0411520:intron 50.0%
AGTAGCCAACATTGGTGTGC+AGG - chr3_2:53782288-53782307 None:intergenic 50.0%
TGCACGTATCTCGTAGCAGA+TGG - chr3_2:53782456-53782475 None:intergenic 50.0%
CACCATTCTCTTCCACACAG+TGG - chr3_2:53783144-53783163 None:intergenic 50.0%
GAACGAGTTCCTCTACCATG+TGG - chr3_2:53783238-53783257 None:intergenic 50.0%
ACCTTTGGCATACTGCTTCC+AGG + chr3_2:53783555-53783574 Msa0411520:intron 50.0%
! GCCATTAGAGCATCCTTGGA+TGG - chr3_2:53784015-53784034 None:intergenic 50.0%
! GCAAGCCATTAGAGCATCCT+TGG - chr3_2:53784019-53784038 None:intergenic 50.0%
! GATGCTCTAATGGCTTGCCA+TGG + chr3_2:53784021-53784040 Msa0411520:intron 50.0%
CCATCATCATCATCACGAGG+CGG - chr3_2:53784108-53784127 None:intergenic 50.0%
!! CCTCGTGATGATGATGATGG+CGG + chr3_2:53784108-53784127 Msa0411520:CDS 50.0%
!! CTCGTGATGATGATGATGGC+GGG + chr3_2:53784109-53784128 Msa0411520:CDS 50.0%
!! TCGTGATGATGATGATGGCG+GGG + chr3_2:53784110-53784129 Msa0411520:CDS 50.0%
GTTACAGGGATAACCGGAGA+TGG + chr3_2:53784238-53784257 Msa0411520:CDS 50.0%
GTACCACGCGGAATCGTTGA+TGG - chr3_2:53780236-53780255 None:intergenic 55.0%
!! CAACACCTTGCCGGCTCTAT+TGG + chr3_2:53780847-53780866 Msa0411520:intron 55.0%
GGCACACATGCAGACTCTTC+AGG - chr3_2:53781449-53781468 None:intergenic 55.0%
!! TAGCGGACTGCGTAAAACGG+TGG - chr3_2:53781687-53781706 None:intergenic 55.0%
TTGGTGTGCAGGCGGAAAAC+TGG - chr3_2:53782277-53782296 None:intergenic 55.0%
TTCCGCCTGCACACCAATGT+TGG + chr3_2:53782280-53782299 Msa0411520:exon 55.0%
AGCCAACATTGGTGTGCAGG+CGG - chr3_2:53782285-53782304 None:intergenic 55.0%
CTGCCTTTAGCAGGAAGGGA+TGG - chr3_2:53782972-53782991 None:intergenic 55.0%
GTGTGCACAGTGAGAAGAGG+TGG + chr3_2:53783118-53783137 Msa0411520:intron 55.0%
GGCCACTGTGTGGAAGAGAA+TGG + chr3_2:53783139-53783158 Msa0411520:CDS 55.0%
GCCTGGAAGCAGTATGCCAA+AGG - chr3_2:53783559-53783578 None:intergenic 55.0%
! CCGCCTCGTGATGATGATGA+TGG + chr3_2:53784105-53784124 Msa0411520:CDS 55.0%
CCGCCATCATCATCATCACG+AGG - chr3_2:53784111-53784130 None:intergenic 55.0%
!! CGTGATGATGATGATGGCGG+GGG + chr3_2:53784111-53784130 Msa0411520:CDS 55.0%
ACAGGGATAACCGGAGATGG+CGG + chr3_2:53784241-53784260 Msa0411520:CDS 55.0%
! TAACCGGAGATGGCGGTGAT+AGG + chr3_2:53784248-53784267 Msa0411520:exon 55.0%
TTGCCTATCACCGCCATCTC+CGG - chr3_2:53784254-53784273 None:intergenic 55.0%
GAGAAGAGGTGGCCACTGTG+TGG + chr3_2:53783129-53783148 Msa0411520:CDS 60.0%
!! GATGATGATGATGGCGGGGG+AGG + chr3_2:53784114-53784133 Msa0411520:CDS 60.0%
!! GATGATGATGGCGGGGGAGG+AGG + chr3_2:53784117-53784136 Msa0411520:CDS 65.0%
GAGGTGGAGGTGGAGGCAAC+TGG + chr3_2:53784136-53784155 Msa0411520:CDS 65.0%
GGAGGTGGAGGCAACTGGTC+TGG + chr3_2:53784141-53784160 Msa0411520:CDS 65.0%
! GGTGGAGGCAACTGGTCTGG+TGG + chr3_2:53784144-53784163 Msa0411520:CDS 65.0%
!! GATGATGGCGGGGGAGGAGG+TGG + chr3_2:53784120-53784139 Msa0411520:CDS 70.0%
!! GATGGCGGGGGAGGAGGTGG+AGG + chr3_2:53784123-53784142 Msa0411520:CDS 75.0%
GGGGGAGGAGGTGGAGGTGG+AGG + chr3_2:53784129-53784148 Msa0411520:CDS 75.0%
! GGCGGGGGAGGAGGTGGAGG+TGG + chr3_2:53784126-53784145 Msa0411520:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 53780047 53784681 53780047 ID=Msa0411520;Name=Msa0411520
chr3_2 mRNA 53780047 53784681 53780047 ID=Msa0411520-mRNA-1;Parent=Msa0411520;Name=Msa0411520-mRNA-1;_AED=0.09;_eAED=0.09;_QI=223|1|1|1|0.6|0.33|6|307|162
chr3_2 exon 53780047 53780251 53780047 ID=Msa0411520-mRNA-1:exon:10799;Parent=Msa0411520-mRNA-1
chr3_2 exon 53782278 53782341 53782278 ID=Msa0411520-mRNA-1:exon:10800;Parent=Msa0411520-mRNA-1
chr3_2 exon 53783128 53783294 53783128 ID=Msa0411520-mRNA-1:exon:10801;Parent=Msa0411520-mRNA-1
chr3_2 exon 53783866 53783935 53783866 ID=Msa0411520-mRNA-1:exon:10802;Parent=Msa0411520-mRNA-1
chr3_2 exon 53784061 53784484 53784061 ID=Msa0411520-mRNA-1:exon:10803;Parent=Msa0411520-mRNA-1
chr3_2 exon 53784593 53784681 53784593 ID=Msa0411520-mRNA-1:exon:10804;Parent=Msa0411520-mRNA-1
chr3_2 five_prime_UTR 53780047 53780251 53780047 ID=Msa0411520-mRNA-1:five_prime_utr;Parent=Msa0411520-mRNA-1
chr3_2 five_prime_UTR 53782278 53782295 53782278 ID=Msa0411520-mRNA-1:five_prime_utr;Parent=Msa0411520-mRNA-1
chr3_2 CDS 53782296 53782341 53782296 ID=Msa0411520-mRNA-1:cds;Parent=Msa0411520-mRNA-1
chr3_2 CDS 53783128 53783294 53783128 ID=Msa0411520-mRNA-1:cds;Parent=Msa0411520-mRNA-1
chr3_2 CDS 53783866 53783935 53783866 ID=Msa0411520-mRNA-1:cds;Parent=Msa0411520-mRNA-1
chr3_2 CDS 53784061 53784266 53784061 ID=Msa0411520-mRNA-1:cds;Parent=Msa0411520-mRNA-1
chr3_2 three_prime_UTR 53784267 53784484 53784267 ID=Msa0411520-mRNA-1:three_prime_utr;Parent=Msa0411520-mRNA-1
chr3_2 three_prime_UTR 53784593 53784681 53784593 ID=Msa0411520-mRNA-1:three_prime_utr;Parent=Msa0411520-mRNA-1
Gene Sequence

>Msa0411520

ATGTTGGCTACTAGTGCAGTTGTATCTTTGCCCAAATTACCACCAGTGAGAAGAGGTGGCCACTGTGTGGAAGAGAATGGTGTTTCTACAGTTAAATTTCCAAGAGGACTACGGACTGTTAATAATTCAAGATCAGTCAGTTGTACACAGTTTCCACATGGTAGAGGAACTCGTTCTACTCAGGCAGCAACTATAATATGTGCTGCAGCTTTGAATGCAAGATGTAGTGCAGAGCAAACTCAAACTGTTTTACGAGAGTCTCCAACAATTACCCATCTTCCAGGTAAGGAGAAGTCCCCACAAATTGATGATGGTGGAAGTGGATTTCCGCCTCGTGATGATGATGATGGCGGGGGAGGAGGTGGAGGTGGAGGCAACTGGTCTGGTGGATTTTTCTTTTTTGGATTTCTTGCTTTTCTTGGCTTCTTAAAAGACAAAGAAAGTGAAGACGAAGGTTACGGTTACAGGGATAACCGGAGATGGCGGTGA

Protein sequence

>Msa0411520

MLATSAVVSLPKLPPVRRGGHCVEENGVSTVKFPRGLRTVNNSRSVSCTQFPHGRGTRSTQAATIICAAALNARCSAEQTQTVLRESPTITHLPGKEKSPQIDDGGSGFPPRDDDDGGGGGGGGGNWSGGFFFFGFLAFLGFLKDKESEDEGYGYRDNRRWR*