Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490430 | XP_003601304.1 | 98.962 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490430 | sp|F4IK01|AUG1_ARATH | 74.468 | 282 | 71 | 1 | 5 | 285 | 13 | 294 | 4.87e-151 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490430 | G7J611 | 98.962 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 0.0 | 584 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044160 | Msa0490430 | 0.801948 | 7.074895e-49 | -8.615850e-47 |
| Msa0124910 | Msa0490430 | 0.802249 | 6.134720e-49 | -8.615850e-47 |
| Msa0183710 | Msa0490430 | 0.804361 | 2.241805e-49 | -8.615850e-47 |
| Msa0184500 | Msa0490430 | 0.802198 | 6.286031e-49 | -8.615850e-47 |
| Msa0437520 | Msa0490430 | 0.807633 | 4.594229e-50 | -8.615850e-47 |
| Msa0479420 | Msa0490430 | 0.804807 | 1.809351e-49 | -8.615850e-47 |
| Msa0276860 | Msa0490430 | 0.827216 | 1.767976e-54 | -8.615850e-47 |
| Msa0326710 | Msa0490430 | 0.810635 | 1.045009e-50 | -8.615850e-47 |
| Msa0490430 | Msa0523110 | 0.809620 | 1.728907e-50 | -8.615850e-47 |
| Msa0490430 | Msa0574900 | 0.827405 | 1.592966e-54 | -8.615850e-47 |
| Msa0490430 | Msa0746650 | 0.801028 | 1.092037e-48 | -8.615850e-47 |
| Msa0490430 | Msa0795750 | 0.803639 | 3.166488e-49 | -8.615850e-47 |
| Msa0490430 | Msa0903340 | 0.807977 | 3.883560e-50 | -8.615850e-47 |
| Msa0490430 | Msa0930770 | 0.812081 | 5.071451e-51 | -8.615850e-47 |
| Msa0490430 | Msa1383820 | 0.806246 | 9.027352e-50 | -8.615850e-47 |
| Msa0490430 | Msa1447100 | 0.810005 | 1.428974e-50 | -8.615850e-47 |
| Msa0490430 | Msa1449900 | 0.807499 | 4.906937e-50 | -8.615850e-47 |
| Msa0490430 | Msa1464880 | 0.803098 | 4.099842e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490430 | MtrunA17_Chr3g0118481 | 98.962 | 289 | 3 | 0 | 1 | 289 | 1 | 289 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0490430 | AT2G41350.1 | 74.733 | 281 | 71 | 0 | 5 | 285 | 13 | 293 | 8.04e-154 | 432 |
| Msa0490430 | AT2G41350.2 | 74.468 | 282 | 71 | 1 | 5 | 285 | 13 | 294 | 4.95e-152 | 427 |
| Msa0490430 | AT2G21980.1 | 79.310 | 58 | 12 | 0 | 228 | 285 | 1 | 58 | 1.16e-24 | 94.4 |
Find 94 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGCAACTTCGAAGGTTT+TGG | 0.267923 | 3_4:-11975681 | None:intergenic |
| GAGACGAGCGGCTTCGTCTT+TGG | 0.285848 | 3_4:-11975777 | None:intergenic |
| TCAGTCTCCACAGAAGTTTC+TGG | 0.296590 | 3_4:+11975632 | Msa0490430:CDS |
| TGCAAGGATTAGAGAGATTC+TGG | 0.305262 | 3_4:+11975935 | Msa0490430:CDS |
| AGAGATTAGCCATAGGGTTT+TGG | 0.308633 | 3_4:+11979049 | Msa0490430:CDS |
| TGGACCCGGTTTATTTATCT+TGG | 0.314175 | 3_4:+11975446 | None:intergenic |
| TCCAAAACCTTCGAAGTTGC+AGG | 0.358974 | 3_4:+11975680 | Msa0490430:CDS |
| TGCCTACAACAATGATATAT+TGG | 0.367113 | 3_4:+11979451 | Msa0490430:three_prime_UTR |
| GCGTGGTGTGTATTCGAATT+CGG | 0.370925 | 3_4:-11975714 | None:intergenic |
| ATCTATATTCTGCGGCTTTG+AGG | 0.378929 | 3_4:-11975817 | None:intergenic |
| GAGCTACTTCATCTTCCAAT+TGG | 0.383390 | 3_4:-11976627 | None:intergenic |
| TTGAACCAAGATAAATAAAC+CGG | 0.390870 | 3_4:-11975451 | None:intergenic |
| TTTAGCTTTCTTGTGGCAAT+GGG | 0.405983 | 3_4:+11976142 | Msa0490430:intron |
| CGTGGTGTGTATTCGAATTC+GGG | 0.408134 | 3_4:-11975713 | None:intergenic |
| CGAGGTTAACATATTTGAAA+AGG | 0.410169 | 3_4:+11976260 | Msa0490430:CDS |
| GCGACGGTGGTGATTGGAAA+TGG | 0.413115 | 3_4:-11975527 | None:intergenic |
| TATTTAGCGACGGTGGTGAT+TGG | 0.415970 | 3_4:-11975533 | None:intergenic |
| AAAACCCTATGGCTAATCTC+TGG | 0.417355 | 3_4:-11979047 | None:intergenic |
| TCTTCTCGATTATACTAGAA+AGG | 0.427173 | 3_4:+11976231 | Msa0490430:CDS |
| GTGCAGAACACTAGCCCAAT+TGG | 0.431088 | 3_4:+11976612 | Msa0490430:intron |
| GTGTATTCGAATTCGGGAAC+GGG | 0.431311 | 3_4:-11975707 | None:intergenic |
| GATTCTGGAGAATGTAGGTT+TGG | 0.441568 | 3_4:+11975950 | Msa0490430:CDS |
| AGAGAGATTCTGGAGAATGT+AGG | 0.442677 | 3_4:+11975945 | Msa0490430:CDS |
| CAATGTGGTTGCGTCGGCGC+AGG | 0.443838 | 3_4:+11975992 | Msa0490430:CDS |
| AGACCGGTGTGGAGGAGAAA+AGG | 0.446370 | 3_4:+11976182 | Msa0490430:CDS |
| CACCAATATATCATTGTTGT+AGG | 0.454100 | 3_4:-11979453 | None:intergenic |
| GGTAACTTCTTAGAGTATCA+AGG | 0.454855 | 3_4:-11979121 | None:intergenic |
| TTGGTGGTTCAGTTGATGAA+TGG | 0.466511 | 3_4:+11979470 | Msa0490430:three_prime_UTR |
| AGCTACTTCATCTTCCAATT+GGG | 0.469118 | 3_4:-11976626 | None:intergenic |
| GAAAAGGGCTAAAGTGCATA+AGG | 0.474248 | 3_4:+11976198 | Msa0490430:CDS |
| TGTGTATTCGAATTCGGGAA+CGG | 0.481161 | 3_4:-11975708 | None:intergenic |
| TAAGAGATACTGAACTTAGT+AGG | 0.497045 | 3_4:+11976045 | Msa0490430:CDS |
| AAACCCTATGGCTAATCTCT+GGG | 0.498715 | 3_4:-11979046 | None:intergenic |
| AAATAAACTAACCTCATAGT+TGG | 0.499847 | 3_4:-11976731 | None:intergenic |
| GGACATTGATTCTCGAAGTC+AGG | 0.503089 | 3_4:-11975597 | None:intergenic |
| GGAGAATGTAGGTTTGGCTC+AGG | 0.504384 | 3_4:+11975956 | Msa0490430:CDS |
| GATTATCCAGGATAAAGCTC+TGG | 0.506748 | 3_4:+11979251 | Msa0490430:intron |
| ACCGTCCAATGTGGTTGCGT+CGG | 0.519517 | 3_4:+11975986 | Msa0490430:CDS |
| GGCTGAGCATAGGAAGGAGC+TGG | 0.522874 | 3_4:+11979079 | Msa0490430:CDS |
| GACCGGTGTGGAGGAGAAAA+GGG | 0.529132 | 3_4:+11976183 | Msa0490430:CDS |
| CTGCGCCGACGCAACCACAT+TGG | 0.532875 | 3_4:-11975991 | None:intergenic |
| GCAAGCAGCTCTTCTAAATG+AGG | 0.535611 | 3_4:+11979341 | Msa0490430:CDS |
| GAAATACCGGAGGCAAGTCT+TGG | 0.536097 | 3_4:-11979142 | None:intergenic |
| AGCTCCGTGTGAGGCTCAGA+TGG | 0.536186 | 3_4:+11976645 | Msa0490430:CDS |
| GATATTTCATTGAGGAAGAC+CGG | 0.541804 | 3_4:+11976166 | Msa0490430:CDS |
| GCAACAATGTGCCAACTATG+AGG | 0.550825 | 3_4:+11976720 | Msa0490430:CDS |
| CTTCTTAGAGTATCAAGGAT+GGG | 0.552403 | 3_4:-11979116 | None:intergenic |
| TAGGCAGCAGTATACAAGCC+TGG | 0.553223 | 3_4:-11979434 | None:intergenic |
| TACCCCAGAGATTAGCCATA+GGG | 0.553381 | 3_4:+11979043 | Msa0490430:CDS |
| GGGTTTACCTGCAACTTCGA+AGG | 0.554455 | 3_4:-11975687 | None:intergenic |
| GTGAGGCTCAGATGGAAAGT+TGG | 0.555194 | 3_4:+11976653 | Msa0490430:CDS |
| CAAGCAGCTCTTCTAAATGA+GGG | 0.558176 | 3_4:+11979342 | Msa0490430:CDS |
| AGCATAGGAAGGAGCTGGAG+AGG | 0.563485 | 3_4:+11979084 | Msa0490430:CDS |
| GAATCAGCGAAGTAAAAGAA+TGG | 0.564127 | 3_4:+11975654 | Msa0490430:CDS |
| CCATGTCAACCAAAACCCTA+TGG | 0.565389 | 3_4:-11979058 | None:intergenic |
| TCGATCTGTGATGTGGTGGT+TGG | 0.568177 | 3_4:-11975497 | None:intergenic |
| ACCTTGGGATCTATATTCTG+CGG | 0.568417 | 3_4:-11975825 | None:intergenic |
| CTACAACAATGATATATTGG+TGG | 0.574874 | 3_4:+11979454 | Msa0490430:three_prime_UTR |
| TGGTTGACATGGCTGAGCAT+AGG | 0.579448 | 3_4:+11979069 | Msa0490430:CDS |
| CGAAGTCAGGATCGGAGAGG+TGG | 0.587211 | 3_4:-11975584 | None:intergenic |
| GCAGACGAGGCTCAACCGTG+TGG | 0.588667 | 3_4:+11979016 | Msa0490430:intron |
| GCCGCAGAATATAGATCCCA+AGG | 0.591800 | 3_4:+11975824 | Msa0490430:CDS |
| CTTTCCATCTGAGCCTCACA+CGG | 0.596528 | 3_4:-11976649 | None:intergenic |
| TCGCTAAATAACCACCGTGC+CGG | 0.596635 | 3_4:+11975546 | Msa0490430:five_prime_UTR |
| GTCAGGATCGGAGAGGTGGT+CGG | 0.596895 | 3_4:-11975580 | None:intergenic |
| ACTTCTTAGAGTATCAAGGA+TGG | 0.600198 | 3_4:-11979117 | None:intergenic |
| GCCGACGCAACCACATTGGA+CGG | 0.603040 | 3_4:-11975987 | None:intergenic |
| ATACAATATTTCTATATGAG+TGG | 0.605899 | 3_4:-11979512 | None:intergenic |
| TTGATTCTCGAAGTCAGGAT+CGG | 0.606465 | 3_4:-11975592 | None:intergenic |
| GGAGACTGATGCTTCTTGAT+CGG | 0.607951 | 3_4:-11975618 | None:intergenic |
| ATTGAGGAAGACCGGTGTGG+AGG | 0.608171 | 3_4:+11976174 | Msa0490430:CDS |
| ATACCCCAGAGATTAGCCAT+AGG | 0.609024 | 3_4:+11979042 | Msa0490430:CDS |
| CTTTAGAGAGAGTAACGAGA+TGG | 0.609598 | 3_4:-11975754 | None:intergenic |
| GCTGATTCCAGAAACTTCTG+TGG | 0.613746 | 3_4:-11975639 | None:intergenic |
| TGACATGGCTGAGCATAGGA+AGG | 0.617304 | 3_4:+11979073 | Msa0490430:CDS |
| GCACGGTGGTTATTTAGCGA+CGG | 0.620879 | 3_4:-11975543 | None:intergenic |
| AAGTTACCAAGACTTGCCTC+CGG | 0.628459 | 3_4:+11979136 | Msa0490430:CDS |
| CAATGGGTGATATTTCATTG+AGG | 0.630300 | 3_4:+11976158 | Msa0490430:CDS |
| TTCAAGACGCTTCTCAGCAG+CGG | 0.631015 | 3_4:-11979310 | None:intergenic |
| CAGACGAGGCTCAACCGTGT+GGG | 0.631934 | 3_4:+11979017 | Msa0490430:intron |
| ATCACGAGCGACGAGACGAG+CGG | 0.645010 | 3_4:-11975789 | None:intergenic |
| GAGCAATTACTTGAATGTGA+TGG | 0.645492 | 3_4:+11976675 | Msa0490430:CDS |
| TTCATTGAGGAAGACCGGTG+TGG | 0.650963 | 3_4:+11976171 | Msa0490430:CDS |
| TCGATCGATCTGTGATGTGG+TGG | 0.654220 | 3_4:-11975501 | None:intergenic |
| AACCCTATGGCTAATCTCTG+GGG | 0.660250 | 3_4:-11979045 | None:intergenic |
| CGGTGGTTATTTAGCGACGG+TGG | 0.664949 | 3_4:-11975540 | None:intergenic |
| ATACTAGAAAGGCTATTGCG+AGG | 0.667502 | 3_4:+11976242 | Msa0490430:CDS |
| GGAGAGTTTACCGTCCAATG+TGG | 0.679839 | 3_4:+11975977 | Msa0490430:CDS |
| AAGCAGCTCTTCTAAATGAG+GGG | 0.682093 | 3_4:+11979343 | Msa0490430:CDS |
| AGATGAAGTAGCTCCGTGTG+AGG | 0.688922 | 3_4:+11976636 | Msa0490430:CDS |
| TCTCTGGGGTATAGCCCACA+CGG | 0.692148 | 3_4:-11979031 | None:intergenic |
| AGATCGATCGATCTGTGATG+TGG | 0.700311 | 3_4:-11975504 | None:intergenic |
| TCTCGAAGTCAGGATCGGAG+AGG | 0.752484 | 3_4:-11975587 | None:intergenic |
| TGCAAGTGAGAGACACTGCG+TGG | 0.791418 | 3_4:-11975731 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACTTTTTTTATGAAATA+AGG | + | chr3_4:11977891-11977910 | Msa0490430:intron | 10.0% |
| !!! | TTTTTGAAAGTTAAAAAAAT+TGG | + | chr3_4:11979554-11979573 | Msa0490430:three_prime_UTR | 10.0% |
| !!! | TTTTGTTATTTCAATATTCT+AGG | - | chr3_4:11976954-11976973 | None:intergenic | 15.0% |
| !! | GTATATAAATAGGATAAATT+TGG | + | chr3_4:11977395-11977414 | Msa0490430:intron | 15.0% |
| !! | TATTATTAATGAAATTCTCT+GGG | + | chr3_4:11977513-11977532 | Msa0490430:intron | 15.0% |
| !!! | AAATGATGATAGTATTTTTT+AGG | + | chr3_4:11977767-11977786 | Msa0490430:intron | 15.0% |
| !!! | TTTTGTGATAAAATTCATTT+TGG | - | chr3_4:11978316-11978335 | None:intergenic | 15.0% |
| !!! | AATGAATTTTATCACAAAAT+TGG | + | chr3_4:11978317-11978336 | Msa0490430:intron | 15.0% |
| !!! | ATGAATTTTATCACAAAATT+GGG | + | chr3_4:11978318-11978337 | Msa0490430:intron | 15.0% |
| !!! | GCATTGTTATTTTTATATAT+TGG | + | chr3_4:11978960-11978979 | Msa0490430:intron | 15.0% |
| !!! | TAAAGTTTGAATTTTGGAAT+TGG | + | chr3_4:11976114-11976133 | Msa0490430:intron | 20.0% |
| !!! | AAAGTTTGAATTTTGGAATT+GGG | + | chr3_4:11976115-11976134 | Msa0490430:intron | 20.0% |
| !! | TTAACATATTTGAAAAGGTA+TGG | + | chr3_4:11976265-11976284 | Msa0490430:intron | 20.0% |
| !!! | TGGTTTTGAACTAAAAATTT+AGG | + | chr3_4:11976285-11976304 | Msa0490430:intron | 20.0% |
| !! | GTAAAAATGTAAAATGAATG+TGG | + | chr3_4:11976460-11976479 | Msa0490430:intron | 20.0% |
| !! | TGAATTTGATGTTAGATAAA+AGG | + | chr3_4:11976834-11976853 | Msa0490430:intron | 20.0% |
| !!! | ATTTTAGCTGTAATTTTTGT+CGG | + | chr3_4:11977124-11977143 | Msa0490430:intron | 20.0% |
| !! | TCTTAATTGAAAACAATTCT+GGG | - | chr3_4:11977338-11977357 | None:intergenic | 20.0% |
| !! | TTCTTAATTGAAAACAATTC+TGG | - | chr3_4:11977339-11977358 | None:intergenic | 20.0% |
| !! | ATAAATAGGATAAATTTGGA+TGG | + | chr3_4:11977399-11977418 | Msa0490430:intron | 20.0% |
| !! | ATTTAGAAAATTTGTGTAGA+AGG | + | chr3_4:11977446-11977465 | Msa0490430:intron | 20.0% |
| !! | GAGAATTTCATTAATAATAC+TGG | - | chr3_4:11977512-11977531 | None:intergenic | 20.0% |
| !! | GTATTATTAATGAAATTCTC+TGG | + | chr3_4:11977512-11977531 | Msa0490430:intron | 20.0% |
| !!! | ACTTGAATTTGACAATTTTA+AGG | - | chr3_4:11978000-11978019 | None:intergenic | 20.0% |
| !!! | GATTAATACTTGTTAATGTT+CGG | + | chr3_4:11978031-11978050 | Msa0490430:intron | 20.0% |
| !! | AAGATCATCAAACATAAAAA+AGG | + | chr3_4:11978086-11978105 | Msa0490430:intron | 20.0% |
| !! | AGATCATCAAACATAAAAAA+GGG | + | chr3_4:11978087-11978106 | Msa0490430:intron | 20.0% |
| !!! | TGAATTTTATCACAAAATTG+GGG | + | chr3_4:11978319-11978338 | Msa0490430:intron | 20.0% |
| !!! | AATTTAATTTGTCCAATCAA+AGG | - | chr3_4:11978409-11978428 | None:intergenic | 20.0% |
| !! | TTTAAACCTAATCTATGTTA+TGG | + | chr3_4:11978684-11978703 | Msa0490430:intron | 20.0% |
| !!! | TTTTTTATCTTCAATTGCTA+AGG | - | chr3_4:11979280-11979299 | None:intergenic | 20.0% |
| !! | TAGCAATTGAAGATAAAAAA+AGG | + | chr3_4:11979280-11979299 | Msa0490430:CDS | 20.0% |
| !!! | TAATTTCAAAGCACATTTTT+TGG | + | chr3_4:11979384-11979403 | Msa0490430:three_prime_UTR | 20.0% |
| !!! | AATTTCAAAGCACATTTTTT+GGG | + | chr3_4:11979385-11979404 | Msa0490430:three_prime_UTR | 20.0% |
| !!! | ATACAATATTTCTATATGAG+TGG | - | chr3_4:11979515-11979534 | None:intergenic | 20.0% |
| !! | CTGTGTTAAAGTTTGAATTT+TGG | + | chr3_4:11976108-11976127 | Msa0490430:intron | 25.0% |
| ! | AGCTGTAAAAATTAATACTG+TGG | + | chr3_4:11976359-11976378 | Msa0490430:intron | 25.0% |
| ! | TAGTCAAATTAAAACTGTCT+AGG | - | chr3_4:11976499-11976518 | None:intergenic | 25.0% |
| ! | AAATAAACTAACCTCATAGT+TGG | - | chr3_4:11976734-11976753 | None:intergenic | 25.0% |
| !!! | AGGTTAGTTTATTTGTTTTG+AGG | + | chr3_4:11976740-11976759 | Msa0490430:intron | 25.0% |
| !!! | GGTTAGTTTATTTGTTTTGA+GGG | + | chr3_4:11976741-11976760 | Msa0490430:intron | 25.0% |
| !!! | GTTAGTTTATTTGTTTTGAG+GGG | + | chr3_4:11976742-11976761 | Msa0490430:intron | 25.0% |
| !!! | TTAGTTTATTTGTTTTGAGG+GGG | + | chr3_4:11976743-11976762 | Msa0490430:intron | 25.0% |
| ! | CAAGAGATATAGTTAGAAAA+AGG | + | chr3_4:11976878-11976897 | Msa0490430:intron | 25.0% |
| !! | AGGTTTAAAACCAGTTTAAT+GGG | - | chr3_4:11976934-11976953 | None:intergenic | 25.0% |
| !! | TAGGTTTAAAACCAGTTTAA+TGG | - | chr3_4:11976935-11976954 | None:intergenic | 25.0% |
| ! | TCAGTGTCTATCTTATAAAT+GGG | - | chr3_4:11977648-11977667 | None:intergenic | 25.0% |
| ! | AATCAAGAAAGAATGAGATT+TGG | + | chr3_4:11977797-11977816 | Msa0490430:intron | 25.0% |
| ! | ATCAAGAAAGAATGAGATTT+GGG | + | chr3_4:11977798-11977817 | Msa0490430:intron | 25.0% |
| ! | TAATAGATTGTAACACATGT+GGG | - | chr3_4:11977872-11977891 | None:intergenic | 25.0% |
| ! | ATAATAGATTGTAACACATG+TGG | - | chr3_4:11977873-11977892 | None:intergenic | 25.0% |
| !! | TTTATGTTTGATGATCTTGA+TGG | - | chr3_4:11978084-11978103 | None:intergenic | 25.0% |
| ! | GATCATCAAACATAAAAAAG+GGG | + | chr3_4:11978088-11978107 | Msa0490430:intron | 25.0% |
| ! | ATCATCAAACATAAAAAAGG+GGG | + | chr3_4:11978089-11978108 | Msa0490430:intron | 25.0% |
| !!! | GTGATAAAATTCATTTTGGT+AGG | - | chr3_4:11978312-11978331 | None:intergenic | 25.0% |
| ! | GGAAATATTAATTGTCTGTT+CGG | + | chr3_4:11978483-11978502 | Msa0490430:intron | 25.0% |
| ! | GAAATATTAATTGTCTGTTC+GGG | + | chr3_4:11978484-11978503 | Msa0490430:intron | 25.0% |
| ! | AGAATACCATAACATAGATT+AGG | - | chr3_4:11978693-11978712 | None:intergenic | 25.0% |
| !!! | TTAAGAGAGTCAGTTTTTTT+TGG | - | chr3_4:11978803-11978822 | None:intergenic | 25.0% |
| ! | ACGGATAACATATTATAAAC+TGG | + | chr3_4:11978911-11978930 | Msa0490430:intron | 25.0% |
| !!! | CTTTCTATTTGTTTTAGTTC+TGG | + | chr3_4:11979177-11979196 | Msa0490430:intron | 25.0% |
| ! | TAACCCTAATTGGTGATAAT+GGG | - | chr3_4:11975863-11975882 | None:intergenic | 30.0% |
| ATTATCACCAATTAGGGTTA+GGG | + | chr3_4:11975863-11975882 | Msa0490430:intron | 30.0% | |
| TAAGAGATACTGAACTTAGT+AGG | + | chr3_4:11976045-11976064 | Msa0490430:CDS | 30.0% | |
| TCTTCTCGATTATACTAGAA+AGG | + | chr3_4:11976231-11976250 | Msa0490430:CDS | 30.0% | |
| CGAGGTTAACATATTTGAAA+AGG | + | chr3_4:11976260-11976279 | Msa0490430:CDS | 30.0% | |
| !! | TTGAGCATTGATACATAACT+TGG | + | chr3_4:11976320-11976339 | Msa0490430:intron | 30.0% |
| TGTAAAATGAATGTGGAACT+TGG | + | chr3_4:11976467-11976486 | Msa0490430:intron | 30.0% | |
| ! | GAGCACATTATTGTAGTTTT+TGG | - | chr3_4:11976522-11976541 | None:intergenic | 30.0% |
| AAACTACAATAATGTGCTCA+AGG | + | chr3_4:11976523-11976542 | Msa0490430:intron | 30.0% | |
| AACTACAATAATGTGCTCAA+GGG | + | chr3_4:11976524-11976543 | Msa0490430:intron | 30.0% | |
| !!! | TAGTTTATTTGTTTTGAGGG+GGG | + | chr3_4:11976744-11976763 | Msa0490430:intron | 30.0% |
| AGTTAGAAAAAGGACAGAAA+AGG | + | chr3_4:11976888-11976907 | Msa0490430:intron | 30.0% | |
| CTTGAACAAGAGAAACAAAA+AGG | + | chr3_4:11976978-11976997 | Msa0490430:intron | 30.0% | |
| TTTCGTATAGCAATTCAGTT+TGG | - | chr3_4:11977162-11977181 | None:intergenic | 30.0% | |
| AGAAGGATGTTAAGTAAATC+AGG | + | chr3_4:11977463-11977482 | Msa0490430:intron | 30.0% | |
| !! | ATAATACTGGCTCTATTCAA+TGG | - | chr3_4:11977499-11977518 | None:intergenic | 30.0% |
| TAGAACACATAGAATTGAAG+TGG | + | chr3_4:11977556-11977575 | Msa0490430:intron | 30.0% | |
| AGAACACATAGAATTGAAGT+GGG | + | chr3_4:11977557-11977576 | Msa0490430:intron | 30.0% | |
| GTCAGTGTCTATCTTATAAA+TGG | - | chr3_4:11977649-11977668 | None:intergenic | 30.0% | |
| TACTATCATCATTTCGTCAA+TGG | - | chr3_4:11977761-11977780 | None:intergenic | 30.0% | |
| AAAGAATGAGATTTGGGAAT+TGG | + | chr3_4:11977804-11977823 | Msa0490430:intron | 30.0% | |
| AGATTTGGGAATTGGAAATT+GGG | + | chr3_4:11977812-11977831 | Msa0490430:intron | 30.0% | |
| GGGTAAAAGATCATAAAGTT+TGG | + | chr3_4:11977832-11977851 | Msa0490430:intron | 30.0% | |
| AATAGATTGTAACACATGTG+GGG | - | chr3_4:11977871-11977890 | None:intergenic | 30.0% | |
| AATAAGGAAATGTTGTTCAG+TGG | + | chr3_4:11977907-11977926 | Msa0490430:intron | 30.0% | |
| ATAAGGAAATGTTGTTCAGT+GGG | + | chr3_4:11977908-11977927 | Msa0490430:intron | 30.0% | |
| AAGGAGTAAATTTGATTCTG+AGG | + | chr3_4:11977939-11977958 | Msa0490430:intron | 30.0% | |
| AGGAGTAAATTTGATTCTGA+GGG | + | chr3_4:11977940-11977959 | Msa0490430:intron | 30.0% | |
| ATGTTCGGTATAAAATTCTC+AGG | + | chr3_4:11978046-11978065 | Msa0490430:intron | 30.0% | |
| !! | GATCTTGATGGATTAAAGAT+AGG | - | chr3_4:11978072-11978091 | None:intergenic | 30.0% |
| TCATCAAACATAAAAAAGGG+GGG | + | chr3_4:11978090-11978109 | Msa0490430:intron | 30.0% | |
| AGGATTTGGAAAAAAAAGGA+AGG | + | chr3_4:11978524-11978543 | Msa0490430:intron | 30.0% | |
| AAAAAAAAGGAAGGAGAAAG+TGG | + | chr3_4:11978533-11978552 | Msa0490430:intron | 30.0% | |
| TGGAAGAAATTGAAGAATCT+GGG | + | chr3_4:11978553-11978572 | Msa0490430:intron | 30.0% | |
| CAAAGACTAAGAGTCAATTT+GGG | - | chr3_4:11978891-11978910 | None:intergenic | 30.0% | |
| TCAAAGACTAAGAGTCAATT+TGG | - | chr3_4:11978892-11978911 | None:intergenic | 30.0% | |
| ! | AATTGACTCTTAGTCTTTGA+CGG | + | chr3_4:11978892-11978911 | Msa0490430:intron | 30.0% |
| GCATGAGAAATATGAAATAC+CGG | - | chr3_4:11979158-11979177 | None:intergenic | 30.0% | |
| ! | TAAGATTCTGTTTTCAAACC+AGG | + | chr3_4:11979416-11979435 | Msa0490430:three_prime_UTR | 30.0% |
| TGCCTACAACAATGATATAT+TGG | + | chr3_4:11979451-11979470 | Msa0490430:three_prime_UTR | 30.0% | |
| CACCAATATATCATTGTTGT+AGG | - | chr3_4:11979456-11979475 | None:intergenic | 30.0% | |
| CTACAACAATGATATATTGG+TGG | + | chr3_4:11979454-11979473 | Msa0490430:three_prime_UTR | 30.0% | |
| GAATCAGCGAAGTAAAAGAA+TGG | + | chr3_4:11975654-11975673 | Msa0490430:CDS | 35.0% | |
| ACTCCCATTATCACCAATTA+GGG | + | chr3_4:11975857-11975876 | Msa0490430:intron | 35.0% | |
| ! | CTAACCCTAATTGGTGATAA+TGG | - | chr3_4:11975864-11975883 | None:intergenic | 35.0% |
| CATTATCACCAATTAGGGTT+AGG | + | chr3_4:11975862-11975881 | Msa0490430:intron | 35.0% | |
| AGATACTGAACTTAGTAGGT+GGG | + | chr3_4:11976049-11976068 | Msa0490430:intron | 35.0% | |
| !!! | GGGTTTTTTTAGCTTTCTTG+TGG | + | chr3_4:11976135-11976154 | Msa0490430:intron | 35.0% |
| !!! | TTTTAGCTTTCTTGTGGCAA+TGG | + | chr3_4:11976141-11976160 | Msa0490430:intron | 35.0% |
| !! | TTTAGCTTTCTTGTGGCAAT+GGG | + | chr3_4:11976142-11976161 | Msa0490430:intron | 35.0% |
| CAATGGGTGATATTTCATTG+AGG | + | chr3_4:11976158-11976177 | Msa0490430:CDS | 35.0% | |
| GATATTTCATTGAGGAAGAC+CGG | + | chr3_4:11976166-11976185 | Msa0490430:CDS | 35.0% | |
| ACTACAATAATGTGCTCAAG+GGG | + | chr3_4:11976525-11976544 | Msa0490430:intron | 35.0% | |
| CGATTCATACTAAACTAGTG+AGG | - | chr3_4:11976586-11976605 | None:intergenic | 35.0% | |
| AGCTACTTCATCTTCCAATT+GGG | - | chr3_4:11976629-11976648 | None:intergenic | 35.0% | |
| GAGCAATTACTTGAATGTGA+TGG | + | chr3_4:11976675-11976694 | Msa0490430:CDS | 35.0% | |
| !! | GGAGTAGGTGTTATTCAATT+TGG | + | chr3_4:11976765-11976784 | Msa0490430:intron | 35.0% |
| ATGTTAGATAAAAGGCTGCA+GGG | + | chr3_4:11976842-11976861 | Msa0490430:intron | 35.0% | |
| AAAAAGGACAGAAAAGGAAG+CGG | + | chr3_4:11976894-11976913 | Msa0490430:intron | 35.0% | |
| TTATCCTGTACCCATTAAAC+TGG | + | chr3_4:11976921-11976940 | Msa0490430:intron | 35.0% | |
| ! | AAAACCAGTTTAATGGGTAC+AGG | - | chr3_4:11976928-11976947 | None:intergenic | 35.0% |
| ! | CTGTAATTTTTGTCGGATGA+TGG | + | chr3_4:11977131-11977150 | Msa0490430:intron | 35.0% |
| TTGTTAGGGTAAAGGAATGA+GGG | + | chr3_4:11977287-11977306 | Msa0490430:intron | 35.0% | |
| GAAAACAATTCTGGGTAAAC+TGG | - | chr3_4:11977330-11977349 | None:intergenic | 35.0% | |
| TAGAGAAGCTAAGTAGTTAG+AGG | + | chr3_4:11977363-11977382 | Msa0490430:intron | 35.0% | |
| AGAGAAGCTAAGTAGTTAGA+GGG | + | chr3_4:11977364-11977383 | Msa0490430:intron | 35.0% | |
| GGAGGGTCATGTATATAAAT+AGG | + | chr3_4:11977385-11977404 | Msa0490430:intron | 35.0% | |
| GGATAAATTTGGATGGAAGA+AGG | + | chr3_4:11977406-11977425 | Msa0490430:intron | 35.0% | |
| TTCTATGTGTTCTATCTCAG+CGG | - | chr3_4:11977550-11977569 | None:intergenic | 35.0% | |
| GTCTATCTTATAAATGGGAG+AGG | - | chr3_4:11977643-11977662 | None:intergenic | 35.0% | |
| GAGATTTGGGAATTGGAAAT+TGG | + | chr3_4:11977811-11977830 | Msa0490430:intron | 35.0% | |
| TAAGGAAATGTTGTTCAGTG+GGG | + | chr3_4:11977909-11977928 | Msa0490430:intron | 35.0% | |
| AACCTACATTTGCTCAAGAT+TGG | + | chr3_4:11977972-11977991 | Msa0490430:intron | 35.0% | |
| CATCAAACATAAAAAAGGGG+GGG | + | chr3_4:11978091-11978110 | Msa0490430:intron | 35.0% | |
| TATTTCGTAGCATGCAGATT+TGG | - | chr3_4:11978237-11978256 | None:intergenic | 35.0% | |
| AATTTGTCCAATCAAAGGTG+AGG | - | chr3_4:11978404-11978423 | None:intergenic | 35.0% | |
| AGATTATTCAGAATCTCAGC+AGG | + | chr3_4:11978438-11978457 | Msa0490430:intron | 35.0% | |
| AACCACAGTATAGAATCTCA+TGG | + | chr3_4:11978462-11978481 | Msa0490430:intron | 35.0% | |
| TTCCATGAGATTCTATACTG+TGG | - | chr3_4:11978467-11978486 | None:intergenic | 35.0% | |
| GTGGAAGAAATTGAAGAATC+TGG | + | chr3_4:11978552-11978571 | Msa0490430:intron | 35.0% | |
| GAACTCAAAAAATGTACTGG+AGG | + | chr3_4:11978634-11978653 | Msa0490430:intron | 35.0% | |
| TCAAAAAATGTACTGGAGGA+GGG | + | chr3_4:11978638-11978657 | Msa0490430:intron | 35.0% | |
| ATCATTCTCTACAAACTGAC+AGG | + | chr3_4:11978752-11978771 | Msa0490430:intron | 35.0% | |
| !!! | AGAGAGTCAGTTTTTTTTGG+TGG | - | chr3_4:11978800-11978819 | None:intergenic | 35.0% |
| AGTCAATTTGGGAGATTGAA+GGG | - | chr3_4:11978880-11978899 | None:intergenic | 35.0% | |
| ! | CTTCTTAGAGTATCAAGGAT+GGG | - | chr3_4:11979119-11979138 | None:intergenic | 35.0% |
| ! | ACTTCTTAGAGTATCAAGGA+TGG | - | chr3_4:11979120-11979139 | None:intergenic | 35.0% |
| ! | GGTAACTTCTTAGAGTATCA+AGG | - | chr3_4:11979124-11979143 | None:intergenic | 35.0% |
| TGAGAAATATGAAATACCGG+AGG | - | chr3_4:11979155-11979174 | None:intergenic | 35.0% | |
| !!! | CAAAGCACATTTTTTGGGTT+TGG | + | chr3_4:11979390-11979409 | Msa0490430:three_prime_UTR | 35.0% |
| TTGATTCTCGAAGTCAGGAT+CGG | - | chr3_4:11975595-11975614 | None:intergenic | 40.0% | |
| TGTGTATTCGAATTCGGGAA+CGG | - | chr3_4:11975711-11975730 | None:intergenic | 40.0% | |
| ! | CTTTAGAGAGAGTAACGAGA+TGG | - | chr3_4:11975757-11975776 | None:intergenic | 40.0% |
| ATCTATATTCTGCGGCTTTG+AGG | - | chr3_4:11975820-11975839 | None:intergenic | 40.0% | |
| ACCTTGGGATCTATATTCTG+CGG | - | chr3_4:11975828-11975847 | None:intergenic | 40.0% | |
| GGGAGTGATTATCTTACCTT+GGG | - | chr3_4:11975843-11975862 | None:intergenic | 40.0% | |
| TGGGAGTGATTATCTTACCT+TGG | - | chr3_4:11975844-11975863 | None:intergenic | 40.0% | |
| CACTCCCATTATCACCAATT+AGG | + | chr3_4:11975856-11975875 | Msa0490430:intron | 40.0% | |
| ACCAATTAGGGTTAGGGTTA+AGG | + | chr3_4:11975869-11975888 | Msa0490430:intron | 40.0% | |
| ACCTTAACCCTAACCCTAAT+TGG | - | chr3_4:11975873-11975892 | None:intergenic | 40.0% | |
| TTAGGGTTAGGGTTAAGGTT+TGG | + | chr3_4:11975874-11975893 | Msa0490430:intron | 40.0% | |
| ! | GATTTTGCATTGTAGCTGCA+AGG | + | chr3_4:11975919-11975938 | Msa0490430:intron | 40.0% |
| TGCAAGGATTAGAGAGATTC+TGG | + | chr3_4:11975935-11975954 | Msa0490430:CDS | 40.0% | |
| ! | AGAGAGATTCTGGAGAATGT+AGG | + | chr3_4:11975945-11975964 | Msa0490430:CDS | 40.0% |
| ! | GATTCTGGAGAATGTAGGTT+TGG | + | chr3_4:11975950-11975969 | Msa0490430:CDS | 40.0% |
| GAGATACTGAACTTAGTAGG+TGG | + | chr3_4:11976048-11976067 | Msa0490430:intron | 40.0% | |
| GAAAAGGGCTAAAGTGCATA+AGG | + | chr3_4:11976198-11976217 | Msa0490430:CDS | 40.0% | |
| ATACTAGAAAGGCTATTGCG+AGG | + | chr3_4:11976242-11976261 | Msa0490430:CDS | 40.0% | |
| CTACAATAATGTGCTCAAGG+GGG | + | chr3_4:11976526-11976545 | Msa0490430:intron | 40.0% | |
| GAGCTACTTCATCTTCCAAT+TGG | - | chr3_4:11976630-11976649 | None:intergenic | 40.0% | |
| GATGTTAGATAAAAGGCTGC+AGG | + | chr3_4:11976841-11976860 | Msa0490430:intron | 40.0% | |
| ACTTGTATCATGCAAGACTG+TGG | + | chr3_4:11977065-11977084 | Msa0490430:intron | 40.0% | |
| TGAATTGACGATTCCCTTCA+TGG | + | chr3_4:11977261-11977280 | Msa0490430:intron | 40.0% | |
| GTTGTTAGGGTAAAGGAATG+AGG | + | chr3_4:11977286-11977305 | Msa0490430:intron | 40.0% | |
| ACAATTCTGGGTAAACTGGT+TGG | - | chr3_4:11977326-11977345 | None:intergenic | 40.0% | |
| AAGCTAAGTAGTTAGAGGGA+GGG | + | chr3_4:11977368-11977387 | Msa0490430:intron | 40.0% | |
| TGCAGAATTGACTGTTACCA+TGG | + | chr3_4:11977584-11977603 | Msa0490430:intron | 40.0% | |
| !! | ACCATGGTTATCGATTTGAC+AGG | + | chr3_4:11977600-11977619 | Msa0490430:intron | 40.0% |
| !! | CCATGGTTATCGATTTGACA+GGG | + | chr3_4:11977601-11977620 | Msa0490430:intron | 40.0% |
| CTTATAAATGGGAGAGGAAC+AGG | - | chr3_4:11977637-11977656 | None:intergenic | 40.0% | |
| ACAAAAGCCCAGAAGTTTCT+TGG | + | chr3_4:11977690-11977709 | Msa0490430:intron | 40.0% | |
| CAAAAGCCCAGAAGTTTCTT+GGG | + | chr3_4:11977691-11977710 | Msa0490430:intron | 40.0% | |
| AAGGAAATGTTGTTCAGTGG+GGG | + | chr3_4:11977910-11977929 | Msa0490430:intron | 40.0% | |
| AGCCAATCTTGAGCAAATGT+AGG | - | chr3_4:11977977-11977996 | None:intergenic | 40.0% | |
| AAATTGGGGAGTAAACATGC+AGG | + | chr3_4:11978333-11978352 | Msa0490430:intron | 40.0% | |
| TAATTGTCTGTTCGGGAGAT+TGG | + | chr3_4:11978491-11978510 | Msa0490430:intron | 40.0% | |
| GGGGAGGATTTGGAAAAAAA+AGG | + | chr3_4:11978520-11978539 | Msa0490430:intron | 40.0% | |
| GAAATTGAAGAATCTGGGAG+AGG | + | chr3_4:11978558-11978577 | Msa0490430:intron | 40.0% | |
| !!! | TTTTGAGTTCCCCTACAGTA+GGG | - | chr3_4:11978624-11978643 | None:intergenic | 40.0% |
| !!! | TTTTTGAGTTCCCCTACAGT+AGG | - | chr3_4:11978625-11978644 | None:intergenic | 40.0% |
| GGGGAACTCAAAAAATGTAC+TGG | + | chr3_4:11978631-11978650 | Msa0490430:intron | 40.0% | |
| CTCAAAAAATGTACTGGAGG+AGG | + | chr3_4:11978637-11978656 | Msa0490430:intron | 40.0% | |
| TCTCTACAAACTGACAGGTT+CGG | + | chr3_4:11978757-11978776 | Msa0490430:intron | 40.0% | |
| !!! | GAGTCAGTTTTTTTTGGTGG+TGG | - | chr3_4:11978797-11978816 | None:intergenic | 40.0% |
| AGGAGGGGATTAGAAGAAAA+GGG | - | chr3_4:11978844-11978863 | None:intergenic | 40.0% | |
| GTCAATTTGGGAGATTGAAG+GGG | - | chr3_4:11978879-11978898 | None:intergenic | 40.0% | |
| GAGTCAATTTGGGAGATTGA+AGG | - | chr3_4:11978881-11978900 | None:intergenic | 40.0% | |
| ! | AATAACATTTGCTGCAGACG+AGG | + | chr3_4:11979003-11979022 | Msa0490430:intron | 40.0% |
| AAACCCTATGGCTAATCTCT+GGG | - | chr3_4:11979049-11979068 | None:intergenic | 40.0% | |
| AAAACCCTATGGCTAATCTC+TGG | - | chr3_4:11979050-11979069 | None:intergenic | 40.0% | |
| !! | AGAGATTAGCCATAGGGTTT+TGG | + | chr3_4:11979049-11979068 | Msa0490430:CDS | 40.0% |
| ! | TTACATTTTGCCCGTGTGTT+TGG | + | chr3_4:11979229-11979248 | Msa0490430:intron | 40.0% |
| TCCTGGATAATCCAAACACA+CGG | - | chr3_4:11979243-11979262 | None:intergenic | 40.0% | |
| GATTATCCAGGATAAAGCTC+TGG | + | chr3_4:11979251-11979270 | Msa0490430:intron | 40.0% | |
| CAAGCAGCTCTTCTAAATGA+GGG | + | chr3_4:11979342-11979361 | Msa0490430:CDS | 40.0% | |
| AAGCAGCTCTTCTAAATGAG+GGG | + | chr3_4:11979343-11979362 | Msa0490430:CDS | 40.0% | |
| !! | TTGGTGGTTCAGTTGATGAA+TGG | + | chr3_4:11979470-11979489 | Msa0490430:three_prime_UTR | 40.0% |
| AGATCGATCGATCTGTGATG+TGG | - | chr3_4:11975507-11975526 | None:intergenic | 45.0% | |
| TATTTAGCGACGGTGGTGAT+TGG | - | chr3_4:11975536-11975555 | None:intergenic | 45.0% | |
| !! | GGACATTGATTCTCGAAGTC+AGG | - | chr3_4:11975600-11975619 | None:intergenic | 45.0% |
| GGAGACTGATGCTTCTTGAT+CGG | - | chr3_4:11975621-11975640 | None:intergenic | 45.0% | |
| TCAGTCTCCACAGAAGTTTC+TGG | + | chr3_4:11975632-11975651 | Msa0490430:CDS | 45.0% | |
| ! | GCTGATTCCAGAAACTTCTG+TGG | - | chr3_4:11975642-11975661 | None:intergenic | 45.0% |
| TCCAAAACCTTCGAAGTTGC+AGG | + | chr3_4:11975680-11975699 | Msa0490430:CDS | 45.0% | |
| ! | ACCTGCAACTTCGAAGGTTT+TGG | - | chr3_4:11975684-11975703 | None:intergenic | 45.0% |
| GTGTATTCGAATTCGGGAAC+GGG | - | chr3_4:11975710-11975729 | None:intergenic | 45.0% | |
| CGTGGTGTGTATTCGAATTC+GGG | - | chr3_4:11975716-11975735 | None:intergenic | 45.0% | |
| GCGTGGTGTGTATTCGAATT+CGG | - | chr3_4:11975717-11975736 | None:intergenic | 45.0% | |
| GCAACAATGTGCCAACTATG+AGG | + | chr3_4:11976720-11976739 | Msa0490430:CDS | 45.0% | |
| !!! | ATTTGTTTTGAGGGGGGAGT+AGG | + | chr3_4:11976750-11976769 | Msa0490430:intron | 45.0% |
| TTTGAGAGCGACGCGAAAAA+TGG | + | chr3_4:11976806-11976825 | Msa0490430:intron | 45.0% | |
| TTGAGAGCGACGCGAAAAAT+GGG | + | chr3_4:11976807-11976826 | Msa0490430:intron | 45.0% | |
| GTGGTAGATACACTGCAATG+TGG | + | chr3_4:11977084-11977103 | Msa0490430:intron | 45.0% | |
| ATTGACGATTCCCTTCATGG+AGG | + | chr3_4:11977264-11977283 | Msa0490430:intron | 45.0% | |
| TTCCCTTCATGGAGGTTGTT+AGG | + | chr3_4:11977272-11977291 | Msa0490430:intron | 45.0% | |
| TCCCTTCATGGAGGTTGTTA+GGG | + | chr3_4:11977273-11977292 | Msa0490430:intron | 45.0% | |
| ACCCTAACAACCTCCATGAA+GGG | - | chr3_4:11977277-11977296 | None:intergenic | 45.0% | |
| TACCCTAACAACCTCCATGA+AGG | - | chr3_4:11977278-11977297 | None:intergenic | 45.0% | |
| CATGGAGGTTGTTAGGGTAA+AGG | + | chr3_4:11977279-11977298 | Msa0490430:intron | 45.0% | |
| GAAGCTAAGTAGTTAGAGGG+AGG | + | chr3_4:11977367-11977386 | Msa0490430:intron | 45.0% | |
| CCCTGTCAAATCGATAACCA+TGG | - | chr3_4:11977604-11977623 | None:intergenic | 45.0% | |
| ACACTGCCCAAGAAACTTCT+GGG | - | chr3_4:11977700-11977719 | None:intergenic | 45.0% | |
| TAACACATGTGGGGTGATGT+GGG | - | chr3_4:11977862-11977881 | None:intergenic | 45.0% | |
| AGGAAATGTTGTTCAGTGGG+GGG | + | chr3_4:11977911-11977930 | Msa0490430:intron | 45.0% | |
| CATTACGCCTCACCTTTGAT+TGG | + | chr3_4:11978394-11978413 | Msa0490430:intron | 45.0% | |
| ATTGAAGAATCTGGGAGAGG+AGG | + | chr3_4:11978561-11978580 | Msa0490430:intron | 45.0% | |
| TTGAAGAATCTGGGAGAGGA+GGG | + | chr3_4:11978562-11978581 | Msa0490430:intron | 45.0% | |
| AACTCAAAACCCCCTACTGT+AGG | + | chr3_4:11978610-11978629 | Msa0490430:intron | 45.0% | |
| ACTCAAAACCCCCTACTGTA+GGG | + | chr3_4:11978611-11978630 | Msa0490430:intron | 45.0% | |
| ! | TTTGAGTTCCCCTACAGTAG+GGG | - | chr3_4:11978623-11978642 | None:intergenic | 45.0% |
| ! | AATGTACTGGAGGAGGGTTT+TGG | + | chr3_4:11978644-11978663 | Msa0490430:intron | 45.0% |
| ! | ATGTACTGGAGGAGGGTTTT+GGG | + | chr3_4:11978645-11978664 | Msa0490430:intron | 45.0% |
| CTCTACAAACTGACAGGTTC+GGG | + | chr3_4:11978758-11978777 | Msa0490430:intron | 45.0% | |
| TCTACAAACTGACAGGTTCG+GGG | + | chr3_4:11978759-11978778 | Msa0490430:intron | 45.0% | |
| !!! | AGTTTTTTTTGGTGGTGGCC+GGG | - | chr3_4:11978792-11978811 | None:intergenic | 45.0% |
| !!! | CAGTTTTTTTTGGTGGTGGC+CGG | - | chr3_4:11978793-11978812 | None:intergenic | 45.0% |
| GAGGAGGGGATTAGAAGAAA+AGG | - | chr3_4:11978845-11978864 | None:intergenic | 45.0% | |
| ATTTGGGAGATTGAAGGGGA+GGG | - | chr3_4:11978875-11978894 | None:intergenic | 45.0% | |
| AATTTGGGAGATTGAAGGGG+AGG | - | chr3_4:11978876-11978895 | None:intergenic | 45.0% | |
| ! | ATACCCCAGAGATTAGCCAT+AGG | + | chr3_4:11979042-11979061 | Msa0490430:CDS | 45.0% |
| ! | TACCCCAGAGATTAGCCATA+GGG | + | chr3_4:11979043-11979062 | Msa0490430:CDS | 45.0% |
| AACCCTATGGCTAATCTCTG+GGG | - | chr3_4:11979048-11979067 | None:intergenic | 45.0% | |
| CCATGTCAACCAAAACCCTA+TGG | - | chr3_4:11979061-11979080 | None:intergenic | 45.0% | |
| !!! | CCATAGGGTTTTGGTTGACA+TGG | + | chr3_4:11979058-11979077 | Msa0490430:CDS | 45.0% |
| AAGTTACCAAGACTTGCCTC+CGG | + | chr3_4:11979136-11979155 | Msa0490430:CDS | 45.0% | |
| CCTGGATAATCCAAACACAC+GGG | - | chr3_4:11979242-11979261 | None:intergenic | 45.0% | |
| GCAAGCAGCTCTTCTAAATG+AGG | + | chr3_4:11979341-11979360 | Msa0490430:CDS | 45.0% | |
| TCGATCTGTGATGTGGTGGT+TGG | - | chr3_4:11975500-11975519 | None:intergenic | 50.0% | |
| TCGATCGATCTGTGATGTGG+TGG | - | chr3_4:11975504-11975523 | None:intergenic | 50.0% | |
| GCACGGTGGTTATTTAGCGA+CGG | - | chr3_4:11975546-11975565 | None:intergenic | 50.0% | |
| TCGCTAAATAACCACCGTGC+CGG | + | chr3_4:11975546-11975565 | Msa0490430:five_prime_UTR | 50.0% | |
| ! | GTGGTCGGAATTTTGTTCGC+CGG | - | chr3_4:11975568-11975587 | None:intergenic | 50.0% |
| GGGTTTACCTGCAACTTCGA+AGG | - | chr3_4:11975690-11975709 | None:intergenic | 50.0% | |
| GCCGCAGAATATAGATCCCA+AGG | + | chr3_4:11975824-11975843 | Msa0490430:CDS | 50.0% | |
| ! | GGAGAATGTAGGTTTGGCTC+AGG | + | chr3_4:11975956-11975975 | Msa0490430:CDS | 50.0% |
| GGAGAGTTTACCGTCCAATG+TGG | + | chr3_4:11975977-11975996 | Msa0490430:CDS | 50.0% | |
| TTCATTGAGGAAGACCGGTG+TGG | + | chr3_4:11976171-11976190 | Msa0490430:CDS | 50.0% | |
| GTGCAGAACACTAGCCCAAT+TGG | + | chr3_4:11976612-11976631 | Msa0490430:intron | 50.0% | |
| AGATGAAGTAGCTCCGTGTG+AGG | + | chr3_4:11976636-11976655 | Msa0490430:CDS | 50.0% | |
| CTTTCCATCTGAGCCTCACA+CGG | - | chr3_4:11976652-11976671 | None:intergenic | 50.0% | |
| GTGAGGCTCAGATGGAAAGT+TGG | + | chr3_4:11976653-11976672 | Msa0490430:CDS | 50.0% | |
| GACACTGCCCAAGAAACTTC+TGG | - | chr3_4:11977701-11977720 | None:intergenic | 50.0% | |
| GTAACACATGTGGGGTGATG+TGG | - | chr3_4:11977863-11977882 | None:intergenic | 50.0% | |
| TTGTCTGTTCGGGAGATTGG+AGG | + | chr3_4:11978494-11978513 | Msa0490430:intron | 50.0% | |
| TGTCTGTTCGGGAGATTGGA+GGG | + | chr3_4:11978495-11978514 | Msa0490430:intron | 50.0% | |
| CTCAAAACCCCCTACTGTAG+GGG | + | chr3_4:11978612-11978631 | Msa0490430:intron | 50.0% | |
| TTGAGTTCCCCTACAGTAGG+GGG | - | chr3_4:11978622-11978641 | None:intergenic | 50.0% | |
| !!! | GTTTTTTTTGGTGGTGGCCG+GGG | - | chr3_4:11978791-11978810 | None:intergenic | 50.0% |
| TTTGGGAGATTGAAGGGGAG+GGG | - | chr3_4:11978874-11978893 | None:intergenic | 50.0% | |
| TGGTTGACATGGCTGAGCAT+AGG | + | chr3_4:11979069-11979088 | Msa0490430:CDS | 50.0% | |
| TGACATGGCTGAGCATAGGA+AGG | + | chr3_4:11979073-11979092 | Msa0490430:CDS | 50.0% | |
| GAAATACCGGAGGCAAGTCT+TGG | - | chr3_4:11979145-11979164 | None:intergenic | 50.0% | |
| CCCGTGTGTTTGGATTATCC+AGG | + | chr3_4:11979239-11979258 | Msa0490430:intron | 50.0% | |
| TTCAAGACGCTTCTCAGCAG+CGG | - | chr3_4:11979313-11979332 | None:intergenic | 50.0% | |
| TAGGCAGCAGTATACAAGCC+TGG | - | chr3_4:11979437-11979456 | None:intergenic | 50.0% | |
| GCGACGGTGGTGATTGGAAA+TGG | - | chr3_4:11975530-11975549 | None:intergenic | 55.0% | |
| CGGTGGTTATTTAGCGACGG+TGG | - | chr3_4:11975543-11975562 | None:intergenic | 55.0% | |
| ! | AATTTTGTTCGCCGGCACGG+TGG | - | chr3_4:11975560-11975579 | None:intergenic | 55.0% |
| ! | CGGAATTTTGTTCGCCGGCA+CGG | - | chr3_4:11975563-11975582 | None:intergenic | 55.0% |
| TCTCGAAGTCAGGATCGGAG+AGG | - | chr3_4:11975590-11975609 | None:intergenic | 55.0% | |
| TGCAAGTGAGAGACACTGCG+TGG | - | chr3_4:11975734-11975753 | None:intergenic | 55.0% | |
| ACCGTCCAATGTGGTTGCGT+CGG | + | chr3_4:11975986-11976005 | Msa0490430:CDS | 55.0% | |
| ATTGAGGAAGACCGGTGTGG+AGG | + | chr3_4:11976174-11976193 | Msa0490430:CDS | 55.0% | |
| AGACCGGTGTGGAGGAGAAA+AGG | + | chr3_4:11976182-11976201 | Msa0490430:CDS | 55.0% | |
| GACCGGTGTGGAGGAGAAAA+GGG | + | chr3_4:11976183-11976202 | Msa0490430:CDS | 55.0% | |
| ! | AGCCCTTTTCTCCTCCACAC+CGG | - | chr3_4:11976188-11976207 | None:intergenic | 55.0% |
| ! | CAAGGGGGACAGAGAGCTTT+TGG | + | chr3_4:11976541-11976560 | Msa0490430:intron | 55.0% |
| TGTTCAGTGGGGGGATTGCA+AGG | + | chr3_4:11977920-11977939 | Msa0490430:intron | 55.0% | |
| GTCTGTTCGGGAGATTGGAG+GGG | + | chr3_4:11978496-11978515 | Msa0490430:intron | 55.0% | |
| ATCTGGGAGAGGAGGGCTTT+AGG | + | chr3_4:11978569-11978588 | Msa0490430:intron | 55.0% | |
| TCTGGGAGAGGAGGGCTTTA+GGG | + | chr3_4:11978570-11978589 | Msa0490430:intron | 55.0% | |
| !!! | TACTGGAGGAGGGTTTTGGG+AGG | + | chr3_4:11978648-11978667 | Msa0490430:intron | 55.0% |
| !! | TCTCTGGGGTATAGCCCACA+CGG | - | chr3_4:11979034-11979053 | None:intergenic | 55.0% |
| AGCATAGGAAGGAGCTGGAG+AGG | + | chr3_4:11979084-11979103 | Msa0490430:CDS | 55.0% | |
| ! | AGGCAGCCAGAGCTTTATCC+TGG | - | chr3_4:11979260-11979279 | None:intergenic | 55.0% |
| GTCAGGATCGGAGAGGTGGT+CGG | - | chr3_4:11975583-11975602 | None:intergenic | 60.0% | |
| CGAAGTCAGGATCGGAGAGG+TGG | - | chr3_4:11975587-11975606 | None:intergenic | 60.0% | |
| GAGACGAGCGGCTTCGTCTT+TGG | - | chr3_4:11975780-11975799 | None:intergenic | 60.0% | |
| ATCACGAGCGACGAGACGAG+CGG | - | chr3_4:11975792-11975811 | None:intergenic | 60.0% | |
| GCCGACGCAACCACATTGGA+CGG | - | chr3_4:11975990-11976009 | None:intergenic | 60.0% | |
| AGCTCCGTGTGAGGCTCAGA+TGG | + | chr3_4:11976645-11976664 | Msa0490430:CDS | 60.0% | |
| TGTTCGGGAGATTGGAGGGG+AGG | + | chr3_4:11978499-11978518 | Msa0490430:intron | 60.0% | |
| GTTCGGGAGATTGGAGGGGA+GGG | + | chr3_4:11978500-11978519 | Msa0490430:intron | 60.0% | |
| TTCGGGAGATTGGAGGGGAG+GGG | + | chr3_4:11978501-11978520 | Msa0490430:intron | 60.0% | |
| TTGGAGGGGAGGGGAGGATT+TGG | + | chr3_4:11978510-11978529 | Msa0490430:intron | 60.0% | |
| ! | CTGGGAGAGGAGGGCTTTAG+GGG | + | chr3_4:11978571-11978590 | Msa0490430:intron | 60.0% |
| GAGATTGAAGGGGAGGGGAC+AGG | - | chr3_4:11978869-11978888 | None:intergenic | 60.0% | |
| CAGACGAGGCTCAACCGTGT+GGG | + | chr3_4:11979017-11979036 | Msa0490430:intron | 60.0% | |
| GGCTGAGCATAGGAAGGAGC+TGG | + | chr3_4:11979079-11979098 | Msa0490430:CDS | 60.0% | |
| ! | CTGCGCCGACGCAACCACAT+TGG | - | chr3_4:11975994-11976013 | None:intergenic | 65.0% |
| ! | CAATGTGGTTGCGTCGGCGC+AGG | + | chr3_4:11975992-11976011 | Msa0490430:CDS | 65.0% |
| CAGGTTCGGGGTTCGAACCC+CGG | + | chr3_4:11978771-11978790 | Msa0490430:intron | 65.0% | |
| TGAAGGGGAGGGGACAGGAG+AGG | - | chr3_4:11978864-11978883 | None:intergenic | 65.0% | |
| GCAGACGAGGCTCAACCGTG+TGG | + | chr3_4:11979016-11979035 | Msa0490430:intron | 65.0% | |
| GGGAGATTGGAGGGGAGGGG+AGG | + | chr3_4:11978504-11978523 | Msa0490430:intron | 70.0% | |
| GGGAGGGGACAGGAGAGGAG+GGG | - | chr3_4:11978859-11978878 | None:intergenic | 70.0% | |
| GGGGAGGGGACAGGAGAGGA+GGG | - | chr3_4:11978860-11978879 | None:intergenic | 70.0% | |
| AGGGGAGGGGACAGGAGAGG+AGG | - | chr3_4:11978861-11978880 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 11975454 | 11979618 | 11975454 | ID=Msa0490430;Name=Msa0490430 |
| chr3_4 | mRNA | 11975454 | 11979618 | 11975454 | ID=Msa0490430-mRNA-1;Parent=Msa0490430;Name=Msa0490430-mRNA-1;_AED=0.14;_eAED=0.14;_QI=160|1|1|1|1|1|6|250|289 |
| chr3_4 | exon | 11975454 | 11975845 | 11975454 | ID=Msa0490430-mRNA-1:exon:3683;Parent=Msa0490430-mRNA-1 |
| chr3_4 | exon | 11975934 | 11976066 | 11975934 | ID=Msa0490430-mRNA-1:exon:3684;Parent=Msa0490430-mRNA-1 |
| chr3_4 | exon | 11976147 | 11976281 | 11976147 | ID=Msa0490430-mRNA-1:exon:3685;Parent=Msa0490430-mRNA-1 |
| chr3_4 | exon | 11976618 | 11976741 | 11976618 | ID=Msa0490430-mRNA-1:exon:3686;Parent=Msa0490430-mRNA-1 |
| chr3_4 | exon | 11979020 | 11979157 | 11979020 | ID=Msa0490430-mRNA-1:exon:3687;Parent=Msa0490430-mRNA-1 |
| chr3_4 | exon | 11979261 | 11979618 | 11979261 | ID=Msa0490430-mRNA-1:exon:3688;Parent=Msa0490430-mRNA-1 |
| chr3_4 | five_prime_UTR | 11975454 | 11975613 | 11975454 | ID=Msa0490430-mRNA-1:five_prime_utr;Parent=Msa0490430-mRNA-1 |
| chr3_4 | CDS | 11975614 | 11975845 | 11975614 | ID=Msa0490430-mRNA-1:cds;Parent=Msa0490430-mRNA-1 |
| chr3_4 | CDS | 11975934 | 11976066 | 11975934 | ID=Msa0490430-mRNA-1:cds;Parent=Msa0490430-mRNA-1 |
| chr3_4 | CDS | 11976147 | 11976281 | 11976147 | ID=Msa0490430-mRNA-1:cds;Parent=Msa0490430-mRNA-1 |
| chr3_4 | CDS | 11976618 | 11976741 | 11976618 | ID=Msa0490430-mRNA-1:cds;Parent=Msa0490430-mRNA-1 |
| chr3_4 | CDS | 11979020 | 11979157 | 11979020 | ID=Msa0490430-mRNA-1:cds;Parent=Msa0490430-mRNA-1 |
| chr3_4 | CDS | 11979261 | 11979368 | 11979261 | ID=Msa0490430-mRNA-1:cds;Parent=Msa0490430-mRNA-1 |
| chr3_4 | three_prime_UTR | 11979369 | 11979618 | 11979369 | ID=Msa0490430-mRNA-1:three_prime_utr;Parent=Msa0490430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
