Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464880 | XP_013457066.1 | 97.059 | 306 | 8 | 1 | 1 | 305 | 1 | 306 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464880 | sp|Q9SKU1|CLC1_ARATH | 52.632 | 304 | 118 | 8 | 21 | 301 | 22 | 322 | 3.34e-71 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464880 | G7ZZ83 | 97.059 | 306 | 8 | 1 | 1 | 305 | 1 | 306 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001800 | Msa1464880 | 0.802267 | 6.085364e-49 | -8.615850e-47 |
| Msa0045810 | Msa1464880 | 0.828419 | 9.083522e-55 | -8.615850e-47 |
| Msa0046870 | Msa1464880 | 0.804162 | 2.465866e-49 | -8.615850e-47 |
| Msa0077340 | Msa1464880 | 0.803523 | 3.347845e-49 | -8.615850e-47 |
| Msa1368390 | Msa1464880 | 0.802565 | 5.281894e-49 | -8.615850e-47 |
| Msa1383820 | Msa1464880 | 0.810456 | 1.142663e-50 | -8.615850e-47 |
| Msa1391500 | Msa1464880 | 0.816584 | 5.127779e-52 | -8.615850e-47 |
| Msa1439250 | Msa1464880 | 0.804736 | 1.872161e-49 | -8.615850e-47 |
| Msa0610690 | Msa1464880 | 0.802957 | 4.384612e-49 | -8.615850e-47 |
| Msa0610700 | Msa1464880 | -0.801955 | 7.051256e-49 | -8.615850e-47 |
| Msa0612350 | Msa1464880 | 0.817099 | 3.931231e-52 | -8.615850e-47 |
| Msa0626460 | Msa1464880 | 0.802950 | 4.397771e-49 | -8.615850e-47 |
| Msa0653450 | Msa1464880 | 0.823976 | 1.036437e-53 | -8.615850e-47 |
| Msa0695880 | Msa1464880 | 0.834748 | 2.505090e-56 | -8.615850e-47 |
| Msa0721930 | Msa1464880 | 0.818789 | 1.631496e-52 | -8.615850e-47 |
| Msa0762930 | Msa1464880 | 0.816012 | 6.885023e-52 | -8.615850e-47 |
| Msa0795750 | Msa1464880 | 0.814294 | 1.657494e-51 | -8.615850e-47 |
| Msa0813160 | Msa1464880 | 0.802185 | 6.324137e-49 | -8.615850e-47 |
| Msa0838620 | Msa1464880 | -0.838594 | 2.620621e-57 | -8.615850e-47 |
| Msa0139500 | Msa1464880 | 0.815222 | 1.032742e-51 | -8.615850e-47 |
| Msa0142430 | Msa1464880 | 0.813254 | 2.808946e-51 | -8.615850e-47 |
| Msa0143590 | Msa1464880 | 0.805225 | 1.479359e-49 | -8.615850e-47 |
| Msa0183710 | Msa1464880 | 0.806918 | 6.514333e-50 | -8.615850e-47 |
| Msa0184500 | Msa1464880 | 0.808009 | 3.822842e-50 | -8.615850e-47 |
| Msa1327870 | Msa1464880 | 0.803666 | 3.126726e-49 | -8.615850e-47 |
| Msa0387930 | Msa1464880 | 0.805327 | 1.408027e-49 | -8.615850e-47 |
| Msa0440350 | Msa1464880 | 0.818704 | 1.706160e-52 | -8.615850e-47 |
| Msa0479420 | Msa1464880 | 0.812389 | 4.345800e-51 | -8.615850e-47 |
| Msa1013190 | Msa1464880 | 0.806828 | 6.804359e-50 | -8.615850e-47 |
| Msa1015360 | Msa1464880 | 0.821476 | 3.957165e-53 | -8.615850e-47 |
| Msa1070890 | Msa1464880 | 0.802020 | 6.840146e-49 | -8.615850e-47 |
| Msa1082410 | Msa1464880 | 0.801168 | 1.022633e-48 | -8.615850e-47 |
| Msa1088320 | Msa1464880 | 0.806953 | 6.404380e-50 | -8.615850e-47 |
| Msa0276860 | Msa1464880 | 0.810083 | 1.375070e-50 | -8.615850e-47 |
| Msa0281470 | Msa1464880 | 0.800508 | 1.394437e-48 | -8.615850e-47 |
| Msa0288620 | Msa1464880 | 0.802566 | 5.280244e-49 | -8.615850e-47 |
| Msa0326710 | Msa1464880 | 0.837683 | 4.496495e-57 | -8.615850e-47 |
| Msa0354840 | Msa1464880 | 0.812937 | 3.297640e-51 | -8.615850e-47 |
| Msa1129330 | Msa1464880 | 0.803531 | 3.334599e-49 | -8.615850e-47 |
| Msa1165460 | Msa1464880 | 0.807567 | 4.745096e-50 | -8.615850e-47 |
| Msa1169220 | Msa1464880 | 0.822248 | 2.622334e-53 | -8.615850e-47 |
| Msa1169660 | Msa1464880 | 0.809158 | 2.172436e-50 | -8.615850e-47 |
| Msa1192120 | Msa1464880 | 0.808264 | 3.373142e-50 | -8.615850e-47 |
| Msa1212830 | Msa1464880 | 0.808439 | 3.095371e-50 | -8.615850e-47 |
| Msa0484210 | Msa1464880 | -0.838113 | 3.486899e-57 | -8.615850e-47 |
| Msa0490430 | Msa1464880 | 0.803098 | 4.099842e-49 | -8.615850e-47 |
| Msa0523110 | Msa1464880 | 0.807559 | 4.765011e-50 | -8.615850e-47 |
| Msa0537760 | Msa1464880 | 0.816644 | 4.973773e-52 | -8.615850e-47 |
| Msa0565700 | Msa1464880 | 0.819653 | 1.037139e-52 | -8.615850e-47 |
| Msa0574900 | Msa1464880 | 0.822127 | 2.797258e-53 | -8.615850e-47 |
| Msa0579070 | Msa1464880 | -0.800813 | 1.208457e-48 | -8.615850e-47 |
| Msa0579220 | Msa1464880 | 0.800185 | 1.622939e-48 | -8.615850e-47 |
| Msa0586450 | Msa1464880 | 0.810631 | 1.047365e-50 | -8.615850e-47 |
| Msa0594120 | Msa1464880 | 0.806717 | 7.183629e-50 | -8.615850e-47 |
| Msa0842750 | Msa1464880 | 0.812210 | 4.753977e-51 | -8.615850e-47 |
| Msa0880910 | Msa1464880 | 0.804209 | 2.411263e-49 | -8.615850e-47 |
| Msa0930770 | Msa1464880 | 0.838395 | 2.949552e-57 | -8.615850e-47 |
| Msa0967780 | Msa1464880 | 0.824161 | 9.376888e-54 | -8.615850e-47 |
| Msa0968360 | Msa1464880 | 0.811683 | 6.191569e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464880 | MtrunA17_Chr4g0047571 | 97.059 | 306 | 8 | 1 | 1 | 305 | 1 | 306 | 0.0 | 608 |
| Msa1464880 | MtrunA17_Chr2g0281981 | 68.439 | 301 | 83 | 5 | 9 | 305 | 21 | 313 | 1.89e-123 | 355 |
| Msa1464880 | MtrunA17_Chr8g0387061 | 50.774 | 323 | 120 | 8 | 14 | 305 | 32 | 346 | 1.20e-73 | 230 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464880 | AT2G20760.1 | 52.632 | 304 | 118 | 8 | 21 | 301 | 22 | 322 | 3.40e-72 | 226 |
| Msa1464880 | AT2G40060.1 | 55.300 | 217 | 86 | 4 | 28 | 237 | 16 | 228 | 1.24e-66 | 209 |
| Msa1464880 | AT3G51890.1 | 62.264 | 159 | 57 | 1 | 87 | 245 | 85 | 240 | 4.28e-59 | 190 |
Find 109 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCCTTTGGTTGTGATTC+AGG | 0.112857 | tig0044696:-4203 | Msa1464880:intergenic |
| GTTTGCCTGGCTTTGGGCCT+TGG | 0.150519 | tig0044696:-4001 | Msa1464880:intergenic |
| CGGAGGAAGGTAACGTTCTT+AGG | 0.196876 | tig0044696:+1679 | Msa1464880:CDS |
| CGGTGGGTTTGCCTGGCTTT+GGG | 0.248540 | tig0044696:-4007 | Msa1464880:intergenic |
| GCAAACCCACCGACCTTTCT+AGG | 0.257216 | tig0044696:+4018 | Msa1464880:CDS |
| TCGGTGGGTTTGCCTGGCTT+TGG | 0.260717 | tig0044696:-4008 | Msa1464880:intergenic |
| ACTAGACGAGAAGGAGAAAA+AGG | 0.322188 | tig0044696:+3618 | Msa1464880:CDS |
| CCGAATACATCCGGAGATTC+CGG | 0.326239 | tig0044696:-1513 | Msa1464880:intergenic |
| TTTGTGAAAATTCTCTTGAT+TGG | 0.330165 | tig0044696:-3862 | Msa1464880:intergenic |
| GGCGACGACGACAACTATTC+TGG | 0.330828 | tig0044696:+1429 | Msa1464880:CDS |
| TGAATCTACAGTACCGTTAT+TGG | 0.331003 | tig0044696:-4228 | Msa1464880:intergenic |
| GGTGCTGATCCATTTGGTTT+AGG | 0.333375 | tig0044696:-4170 | Msa1464880:intergenic |
| CCAGTGCATGTGATGGAAAA+TGG | 0.335341 | tig0044696:+1579 | Msa1464880:CDS |
| TGAGAAGAAAAGAGGCAAAA+AGG | 0.365407 | tig0044696:+3947 | Msa1464880:CDS |
| AAAATTACTGGAAAGCAATT+GGG | 0.366531 | tig0044696:+3895 | Msa1464880:CDS |
| TGCCTGGCTTTGGGCCTTGG+AGG | 0.380338 | tig0044696:-3998 | Msa1464880:intergenic |
| TTCCCTTTGGAGTCTTTAGC+AGG | 0.387984 | tig0044696:-4107 | Msa1464880:intergenic |
| CCGTTATTGGCAGCATCCTT+TGG | 0.394987 | tig0044696:-4215 | Msa1464880:intergenic |
| GGTTTAGGTGCTGATCCATT+TGG | 0.396493 | tig0044696:-4155 | Msa1464880:intergenic |
| GAAAGGTCGGTGGGTTTGCC+TGG | 0.402706 | tig0044696:-4014 | Msa1464880:intergenic |
| CCGGAATCTCCGGATGTATT+CGG | 0.406444 | tig0044696:+1513 | Msa1464880:CDS |
| GCTGCTGTTGTGTGATCTAC+AGG | 0.409676 | tig0044696:-1489 | Msa1464880:intergenic |
| ATTATTGTCTATTATGACCT+TGG | 0.418043 | tig0044696:+4441 | Msa1464880:three_prime_UTR |
| ACTTCCGGTGCTGATCCATT+TGG | 0.420411 | tig0044696:-4176 | Msa1464880:intergenic |
| AACAGCAGCGCCGGAATCTC+CGG | 0.421407 | tig0044696:+1503 | Msa1464880:CDS |
| TTGGAGTCTTTAGCAGGTGC+AGG | 0.422981 | tig0044696:-4101 | Msa1464880:intergenic |
| TGTGATTCAGGTGCAACTTC+CGG | 0.424313 | tig0044696:-4191 | Msa1464880:intergenic |
| CTCAATGTTGGCAACCTCAC+GGG | 0.426203 | tig0044696:-3928 | Msa1464880:intergenic |
| GCAGACTGCTCCTCAGTGGC+AGG | 0.431231 | tig0044696:-4266 | Msa1464880:intergenic |
| ACAAGGTTCAAAACAGAGAA+AGG | 0.447399 | tig0044696:+3728 | Msa1464880:CDS |
| GCTTCCTCCTCCTGCTGAGA+TGG | 0.448243 | tig0044696:+1653 | Msa1464880:CDS |
| GTTTGTGGAACAGTTATACT+TGG | 0.453267 | tig0044696:+3839 | Msa1464880:intron |
| GGTGAAGTGGTCTTCGTTGA+CGG | 0.458970 | tig0044696:-1403 | Msa1464880:intergenic |
| AATGAGATTAAAGATTATTG+AGG | 0.464614 | tig0044696:+3648 | Msa1464880:CDS |
| ATGGAAAATGGAAACGGTTA+TGG | 0.473482 | tig0044696:+1591 | Msa1464880:CDS |
| GAAACAGCAACTAAACCAAA+TGG | 0.475248 | tig0044696:+4140 | Msa1464880:CDS |
| AAGGTCATAATAGACAATAA+TGG | 0.479197 | tig0044696:-4439 | Msa1464880:intergenic |
| CTAAGAACGTTACCTTCCTC+CGG | 0.484104 | tig0044696:-1678 | Msa1464880:intergenic |
| AGAATAGTTGTCGTCGTCGC+CGG | 0.485975 | tig0044696:-1427 | Msa1464880:intergenic |
| AGGAGGAAGCACCGGACCAT+CGG | 0.488490 | tig0044696:-1640 | Msa1464880:intergenic |
| GGATCAGCACCTAAACCAAA+TGG | 0.488856 | tig0044696:+4161 | Msa1464880:CDS |
| CATCACATGCACTGGTTCGA+AGG | 0.488969 | tig0044696:-1571 | Msa1464880:intergenic |
| GTGATCTACAGGGACATCTT+CGG | 0.492594 | tig0044696:-1478 | Msa1464880:intergenic |
| AAGTGGGTTTCTATGAGAAA+AGG | 0.493819 | tig0044696:+3686 | Msa1464880:CDS |
| TCCTCCGGCTCCATCTCAGC+AGG | 0.495243 | tig0044696:-1663 | Msa1464880:intergenic |
| GGAGGAAGGTAACGTTCTTA+GGG | 0.497743 | tig0044696:+1680 | Msa1464880:CDS |
| TCCTCCTGCTGAGATGGAGC+CGG | 0.501036 | tig0044696:+1659 | Msa1464880:CDS |
| GTGGCAGGAGCTTCTTTCTG+AGG | 0.503664 | tig0044696:-4251 | Msa1464880:intergenic |
| ATGTAACATTTGAATTTCCA+AGG | 0.506294 | tig0044696:-4458 | Msa1464880:intergenic |
| GTCCTCCAAGGCCCAAAGCC+AGG | 0.509150 | tig0044696:+3996 | Msa1464880:CDS |
| TTAGCAGGTGCAGGTGGAGG+AGG | 0.510354 | tig0044696:-4092 | Msa1464880:intergenic |
| CCAAAGGATGCTGCCAATAA+CGG | 0.510873 | tig0044696:+4215 | Msa1464880:CDS |
| ATATCTGCCGCATCCTAGAA+AGG | 0.513686 | tig0044696:-4031 | Msa1464880:intergenic |
| TGTATTCGGATTCAGCGATC+AGG | 0.515580 | tig0044696:+1527 | Msa1464880:CDS |
| CGTCGTCGCCGGCGGTGAAG+TGG | 0.522107 | tig0044696:-1416 | Msa1464880:intergenic |
| GGCTCCATCTCAGCAGGAGG+AGG | 0.522435 | tig0044696:-1657 | Msa1464880:intergenic |
| TCTTTAGCAGGTGCAGGTGG+AGG | 0.524857 | tig0044696:-4095 | Msa1464880:intergenic |
| GACGACAACTATTCTGGATA+CGG | 0.532542 | tig0044696:+1435 | Msa1464880:CDS |
| CAAGGTTCAAAACAGAGAAA+GGG | 0.537446 | tig0044696:+3729 | Msa1464880:CDS |
| TTGGAAATTCAAATGTTACA+TGG | 0.538799 | tig0044696:+4460 | Msa1464880:three_prime_UTR |
| TCTCAATGTTGGCAACCTCA+CGG | 0.539692 | tig0044696:-3929 | Msa1464880:intergenic |
| AAGGGAGACTGAGCGTAACT+CGG | 0.540887 | tig0044696:-1552 | Msa1464880:intergenic |
| AAGGTAACGTTCTTAGGGAA+TGG | 0.547512 | tig0044696:+1685 | Msa1464880:CDS |
| CACCTGCTAAAGACTCCAAA+GGG | 0.547927 | tig0044696:+4105 | Msa1464880:CDS |
| AACGAAGACCACTTCACCGC+CGG | 0.548831 | tig0044696:+1408 | Msa1464880:CDS |
| GAGTCTTTAGCAGGTGCAGG+TGG | 0.551285 | tig0044696:-4098 | Msa1464880:intergenic |
| TCGCTGAATCCGAATACATC+CGG | 0.554031 | tig0044696:-1522 | Msa1464880:intergenic |
| TGCTATTCAACTAGACGAGA+AGG | 0.554504 | tig0044696:+3609 | Msa1464880:CDS |
| TCAAAACAGAGAAAGGGAAA+AGG | 0.555817 | tig0044696:+3735 | Msa1464880:CDS |
| CTTCGAACCAGTGCATGTGA+TGG | 0.556019 | tig0044696:+1572 | Msa1464880:CDS |
| GTGGTCTTCGTTGACGGTGA+AGG | 0.559914 | tig0044696:-1397 | Msa1464880:intergenic |
| GCCAACATTGAGAAGAAAAG+AGG | 0.561154 | tig0044696:+3939 | Msa1464880:CDS |
| AAAGATTATTGAGGAAGCTG+AGG | 0.562392 | tig0044696:+3657 | Msa1464880:CDS |
| TCCGGCTCCATCTCAGCAGG+AGG | 0.569202 | tig0044696:-1660 | Msa1464880:intergenic |
| GAAGCTGAGGATTACAAAGT+GGG | 0.570600 | tig0044696:+3670 | Msa1464880:CDS |
| TTCGTTGACGGTGAAGGACA+TGG | 0.571845 | tig0044696:-1391 | Msa1464880:intergenic |
| ATCACATGCACTGGTTCGAA+GGG | 0.575990 | tig0044696:-1570 | Msa1464880:intergenic |
| AGATCACACAACAGCAGCGC+CGG | 0.576259 | tig0044696:+1494 | Msa1464880:CDS |
| GCTGAGATGGAGCCGGAGGA+AGG | 0.577970 | tig0044696:+1666 | Msa1464880:CDS |
| TCCTGCTGAGATGGAGCCGG+AGG | 0.580872 | tig0044696:+1662 | Msa1464880:CDS |
| TCAGCAGGAGGAGGAAGCAC+CGG | 0.587615 | tig0044696:-1648 | Msa1464880:intergenic |
| AAATTACTGGAAAGCAATTG+GGG | 0.589625 | tig0044696:+3896 | Msa1464880:CDS |
| CCTTGGAGGACAGTAACTGA+TGG | 0.599991 | tig0044696:-3984 | Msa1464880:intergenic |
| CCACCGACCTTTCTAGGATG+CGG | 0.602155 | tig0044696:+4024 | Msa1464880:CDS |
| TGCACCTGAATCACAACCAA+AGG | 0.604455 | tig0044696:+4199 | Msa1464880:CDS |
| ATAGTTGTCGTCGTCGCCGG+CGG | 0.604799 | tig0044696:-1424 | Msa1464880:intergenic |
| GGAGGAGGAATCATGTGAAG+TGG | 0.606489 | tig0044696:-4077 | Msa1464880:intergenic |
| TGCTAAAGACTCCAAAGGGA+AGG | 0.606563 | tig0044696:+4109 | Msa1464880:CDS |
| CTGCCGCATCCTAGAAAGGT+CGG | 0.609710 | tig0044696:-4027 | Msa1464880:intergenic |
| GGAAGCTGAGGATTACAAAG+TGG | 0.610216 | tig0044696:+3669 | Msa1464880:CDS |
| CGCATCCTAGAAAGGTCGGT+GGG | 0.610689 | tig0044696:-4023 | Msa1464880:intergenic |
| TCAATGTTGGCAACCTCACG+GGG | 0.611587 | tig0044696:-3927 | Msa1464880:intergenic |
| CCATCAGTTACTGTCCTCCA+AGG | 0.615544 | tig0044696:+3984 | Msa1464880:CDS |
| CCGCATCCTAGAAAGGTCGG+TGG | 0.616621 | tig0044696:-4024 | Msa1464880:intergenic |
| TAAACCAAATGGATCAGCAC+CGG | 0.618396 | tig0044696:+4172 | Msa1464880:CDS |
| AAAGACTCCAAAGGGAAGGA+CGG | 0.629704 | tig0044696:+4113 | Msa1464880:CDS |
| GCACCTGCTAAAGACTCCAA+AGG | 0.630783 | tig0044696:+4104 | Msa1464880:CDS |
| CTGCTGTTGTGTGATCTACA+GGG | 0.636206 | tig0044696:-1488 | Msa1464880:intergenic |
| CATGTGATGGAAAATGGAAA+CGG | 0.640946 | tig0044696:+1585 | Msa1464880:CDS |
| GACAACTATTCTGGATACGG+CGG | 0.653119 | tig0044696:+1438 | Msa1464880:CDS |
| GAAAATGGAAACGGTTATGG+CGG | 0.655105 | tig0044696:+1594 | Msa1464880:CDS |
| ACGTTCTTAGGGAATGGCGC+CGG | 0.656812 | tig0044696:+1691 | Msa1464880:CDS |
| ATCTACAGGGACATCTTCGG+CGG | 0.664893 | tig0044696:-1475 | Msa1464880:intergenic |
| TTAATGATTGAAATAAAATG+CGG | 0.669839 | tig0044696:-4397 | Msa1464880:intergenic |
| GAAAGAAGCTCCTGCCACTG+AGG | 0.676516 | tig0044696:+4256 | Msa1464880:CDS |
| TGCAGCAGACTGCTCCTCAG+TGG | 0.680257 | tig0044696:-4270 | Msa1464880:intergenic |
| GGAGGAATCATGTGAAGTGG+TGG | 0.685796 | tig0044696:-4074 | Msa1464880:intergenic |
| TGGGGAGATAATTCCCCGTG+AGG | 0.688947 | tig0044696:+3914 | Msa1464880:CDS |
| GCTCAATGTTGAGACAAACA+AGG | 0.723788 | tig0044696:+3711 | Msa1464880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTAAAAAATATAAGGA+AGG | + | tig0044696:2362-2381 | Msa1464880:intron | 15.0% |
| !! | TAATAATTAAAAGTAGAGTA+AGG | + | tig0044696:3281-3300 | Msa1464880:intron | 15.0% |
| !! | ACAAATAGTATTTGTATTAA+TGG | - | tig0044696:3447-3466 | Msa1464880:intergenic | 15.0% |
| !! | TAATACAAATACTATTTGTT+TGG | + | tig0044696:3448-3467 | Msa1464880:intron | 15.0% |
| !!! | ATCTCTAAAAATTAAAAGAA+CGG | - | tig0044696:3812-3831 | Msa1464880:intergenic | 15.0% |
| !! | TTAATGATTGAAATAAAATG+CGG | - | tig0044696:4400-4419 | Msa1464880:intergenic | 15.0% |
| !! | ATTGTCTTGAAAACATTTAT+TGG | + | tig0044696:2258-2277 | Msa1464880:intron | 20.0% |
| !! | AACATTTATTGGATTTAATG+AGG | + | tig0044696:2269-2288 | Msa1464880:intron | 20.0% |
| !! | ACATTTATTGGATTTAATGA+GGG | + | tig0044696:2270-2289 | Msa1464880:intron | 20.0% |
| !! | TAAAAAATATAAGGAAGGAA+GGG | + | tig0044696:2367-2386 | Msa1464880:intron | 20.0% |
| !! | TTTATGTTAATTGTCTATGT+TGG | + | tig0044696:2457-2476 | Msa1464880:intron | 20.0% |
| !!! | TAATTTTTTTCCTTCGAATT+TGG | + | tig0044696:2636-2655 | Msa1464880:intron | 20.0% |
| !!! | TTATATCCATCGATTAAAAA+AGG | + | tig0044696:2709-2728 | Msa1464880:intron | 20.0% |
| !! | TCCATCATATTATTAAATGA+TGG | + | tig0044696:2916-2935 | Msa1464880:intron | 20.0% |
| !! | CCATCATATTATTAAATGAT+GGG | + | tig0044696:2917-2936 | Msa1464880:intron | 20.0% |
| !! | AGATGAAATTAAGATATGTT+TGG | + | tig0044696:2979-2998 | Msa1464880:intron | 20.0% |
| !! | TAAAAAGTAAGTTCAGAATA+AGG | + | tig0044696:3110-3129 | Msa1464880:intron | 20.0% |
| !! | AATGAGATTAAAGATTATTG+AGG | + | tig0044696:3648-3667 | Msa1464880:CDS | 20.0% |
| !!! | GTAAAAAGTAATGATAATGT+AGG | - | tig0044696:3774-3793 | Msa1464880:intergenic | 20.0% |
| !! | AAAAAAAGGTTAAAAATGCA+GGG | - | tig0044696:4346-4365 | Msa1464880:intergenic | 20.0% |
| !! | AAAAAAAAGGTTAAAAATGC+AGG | - | tig0044696:4347-4366 | Msa1464880:intergenic | 20.0% |
| !!! | GCATTTTATTTCAATCATTA+AGG | + | tig0044696:4399-4418 | Msa1464880:three_prime_UTR | 20.0% |
| !! | ATGTTTTCTTTTGAATGCTT+AGG | + | tig0044696:1824-1843 | Msa1464880:intron | 25.0% |
| ! | GTAAAAAATATAAGGAAGGA+AGG | + | tig0044696:2366-2385 | Msa1464880:intron | 25.0% |
| ! | ACTAGAAGTCTAGAAATAAA+GGG | - | tig0044696:2616-2635 | Msa1464880:intergenic | 25.0% |
| ! | AACTAGAAGTCTAGAAATAA+AGG | - | tig0044696:2617-2636 | Msa1464880:intergenic | 25.0% |
| !! | AATTTGGTTTCTTTATGTGA+TGG | + | tig0044696:2652-2671 | Msa1464880:intron | 25.0% |
| !!! | TTTATTTTCGTAGGAAAAGT+AGG | + | tig0044696:2683-2702 | Msa1464880:intron | 25.0% |
| !! | TTATTTTCGTAGGAAAAGTA+GGG | + | tig0044696:2684-2703 | Msa1464880:intron | 25.0% |
| ! | CCCATCATTTAATAATATGA+TGG | - | tig0044696:2920-2939 | Msa1464880:intergenic | 25.0% |
| !!! | TTTTTTTCTTCTTCCATCTT+AGG | + | tig0044696:3185-3204 | Msa1464880:intron | 25.0% |
| ! | AAAGTTTAAACTACCTAAGA+TGG | - | tig0044696:3201-3220 | Msa1464880:intergenic | 25.0% |
| !!! | ATTCGTAAAAGCATCAATAA+CGG | + | tig0044696:3237-3256 | Msa1464880:intron | 25.0% |
| ! | AAATGGTTGATCTTTAAACA+TGG | + | tig0044696:3339-3358 | Msa1464880:intron | 25.0% |
| ! | TTATTCTGAACCTTAAATGT+AGG | + | tig0044696:3486-3505 | Msa1464880:intron | 25.0% |
| ! | AAATACTTGTCCTACATTTA+AGG | - | tig0044696:3499-3518 | Msa1464880:intergenic | 25.0% |
| !! | GATCTTAAATCTCTAAAGAT+CGG | - | tig0044696:3531-3550 | Msa1464880:intergenic | 25.0% |
| ! | TTTGTGAAAATTCTCTTGAT+TGG | - | tig0044696:3865-3884 | Msa1464880:intergenic | 25.0% |
| ! | AAAAATTACTGGAAAGCAAT+TGG | + | tig0044696:3894-3913 | Msa1464880:CDS | 25.0% |
| ! | AAAATTACTGGAAAGCAATT+GGG | + | tig0044696:3895-3914 | Msa1464880:CDS | 25.0% |
| ! | AAAAAAGGTTAAAAATGCAG+GGG | - | tig0044696:4345-4364 | Msa1464880:intergenic | 25.0% |
| !! | ACTAAAAGCATGCAAAAAAA+AGG | - | tig0044696:4360-4379 | Msa1464880:intergenic | 25.0% |
| ! | AAGGTCATAATAGACAATAA+TGG | - | tig0044696:4442-4461 | Msa1464880:intergenic | 25.0% |
| ! | ATTATTGTCTATTATGACCT+TGG | + | tig0044696:4441-4460 | Msa1464880:three_prime_UTR | 25.0% |
| ! | ATGTAACATTTGAATTTCCA+AGG | - | tig0044696:4461-4480 | Msa1464880:intergenic | 25.0% |
| ! | TTGGAAATTCAAATGTTACA+TGG | + | tig0044696:4460-4479 | Msa1464880:three_prime_UTR | 25.0% |
| AATGCTTAGGATTATGAATC+AGG | + | tig0044696:1837-1856 | Msa1464880:intron | 30.0% | |
| ATGCTTAGGATTATGAATCA+GGG | + | tig0044696:1838-1857 | Msa1464880:intron | 30.0% | |
| CCATCAAAAAAACTTGGTTT+CGG | - | tig0044696:1940-1959 | Msa1464880:intergenic | 30.0% | |
| TCTCAACCATCAAAAAAACT+TGG | - | tig0044696:1946-1965 | Msa1464880:intergenic | 30.0% | |
| !! | ATAATGGATGAATATGTCTG+TGG | + | tig0044696:2116-2135 | Msa1464880:intron | 30.0% |
| AATATGTCTGTGGATCAATT+GGG | + | tig0044696:2126-2145 | Msa1464880:intron | 30.0% | |
| CTAGATCTAAGTTTAACAGA+CGG | - | tig0044696:2180-2199 | Msa1464880:intergenic | 30.0% | |
| TGAACATATGAGAAACATGT+AGG | + | tig0044696:2297-2316 | Msa1464880:intron | 30.0% | |
| GAACATATGAGAAACATGTA+GGG | + | tig0044696:2298-2317 | Msa1464880:intron | 30.0% | |
| AAACACGATATGCATATGTT+TGG | - | tig0044696:2439-2458 | Msa1464880:intergenic | 30.0% | |
| TTGTCTATGTTGGAAAAACT+TGG | + | tig0044696:2467-2486 | Msa1464880:intron | 30.0% | |
| GAACATCATAAAACTACACA+AGG | - | tig0044696:2569-2588 | Msa1464880:intergenic | 30.0% | |
| CATAAAGAAACCAAATTCGA+AGG | - | tig0044696:2649-2668 | Msa1464880:intergenic | 30.0% | |
| !! | TTTCTTTATGTGATGGATCA+TGG | + | tig0044696:2659-2678 | Msa1464880:intron | 30.0% |
| !! | GATCATGGATTTATTTTCGT+AGG | + | tig0044696:2674-2693 | Msa1464880:intron | 30.0% |
| TGACTATTTACAATCTGACA+CGG | - | tig0044696:3089-3108 | Msa1464880:intergenic | 30.0% | |
| ! | AAATTGTTTTCTCACTACGT+GGG | - | tig0044696:3409-3428 | Msa1464880:intergenic | 30.0% |
| ! | AAAATTGTTTTCTCACTACG+TGG | - | tig0044696:3410-3429 | Msa1464880:intergenic | 30.0% |
| ! | GTAGTGAGAAAACAATTTTC+TGG | + | tig0044696:3411-3430 | Msa1464880:intron | 30.0% |
| ACTATTTGTTTGGTCATATG+AGG | + | tig0044696:3458-3477 | Msa1464880:intron | 30.0% | |
| TTAGAGATGAACTATGTTTG+TGG | + | tig0044696:3824-3843 | Msa1464880:intron | 30.0% | |
| ! | TCAAGAGAATTTTCACAAAG+AGG | + | tig0044696:3866-3885 | Msa1464880:CDS | 30.0% |
| AAATTACTGGAAAGCAATTG+GGG | + | tig0044696:3896-3915 | Msa1464880:CDS | 30.0% | |
| !!! | TTGCATGCTTTTAGTTTGTA+TGG | + | tig0044696:4365-4384 | Msa1464880:three_prime_UTR | 30.0% |
| ! | CATGTGATGGAAAATGGAAA+CGG | + | tig0044696:1585-1604 | Msa1464880:CDS | 35.0% |
| ATGGAAAATGGAAACGGTTA+TGG | + | tig0044696:1591-1610 | Msa1464880:CDS | 35.0% | |
| AGGATTATGAATCAGGGATT+AGG | + | tig0044696:1844-1863 | Msa1464880:intron | 35.0% | |
| !!! | CCGAAACCAAGTTTTTTTGA+TGG | + | tig0044696:1937-1956 | Msa1464880:intron | 35.0% |
| GAGTTCACTAAATCAGCATA+TGG | - | tig0044696:1978-1997 | Msa1464880:intergenic | 35.0% | |
| AAAACAGATCCTACGAACTA+TGG | - | tig0044696:2072-2091 | Msa1464880:intergenic | 35.0% | |
| ! | GTTTTGCATGCTTGTTTATG+CGG | + | tig0044696:2087-2106 | Msa1464880:intron | 35.0% |
| ! | TTTTGCATGCTTGTTTATGC+GGG | + | tig0044696:2088-2107 | Msa1464880:intron | 35.0% |
| ! | GTTTATGCGGGTTGAAATAA+TGG | + | tig0044696:2100-2119 | Msa1464880:intron | 35.0% |
| GAATATGTCTGTGGATCAAT+TGG | + | tig0044696:2125-2144 | Msa1464880:intron | 35.0% | |
| ATATGTCTGTGGATCAATTG+GGG | + | tig0044696:2127-2146 | Msa1464880:intron | 35.0% | |
| CGTCTGTTAAACTTAGATCT+AGG | + | tig0044696:2178-2197 | Msa1464880:intron | 35.0% | |
| !!! | CTACAGCCTTTTTTAATCGA+TGG | - | tig0044696:2718-2737 | Msa1464880:intergenic | 35.0% |
| AAGTTGTGCTTCAGTTGAAA+GGG | - | tig0044696:2814-2833 | Msa1464880:intergenic | 35.0% | |
| AAAGTTGTGCTTCAGTTGAA+AGG | - | tig0044696:2815-2834 | Msa1464880:intergenic | 35.0% | |
| ATGAACCAGAAGATCAAAGT+AGG | + | tig0044696:2954-2973 | Msa1464880:intron | 35.0% | |
| TCTATCCTACTTTGATCTTC+TGG | - | tig0044696:2962-2981 | Msa1464880:intergenic | 35.0% | |
| !! | ATGCAGAGCTTATAGTTTTG+TGG | - | tig0044696:3048-3067 | Msa1464880:intergenic | 35.0% |
| AATAACGGTTGAGCAAATGA+AGG | + | tig0044696:3252-3271 | Msa1464880:intron | 35.0% | |
| GTAAGGTCAAAGAAAGCAAT+AGG | + | tig0044696:3298-3317 | Msa1464880:intron | 35.0% | |
| TGGTGTATGACAAGAAGTTA+TGG | + | tig0044696:3359-3378 | Msa1464880:intron | 35.0% | |
| AAAGATTATTGAGGAAGCTG+AGG | + | tig0044696:3657-3676 | Msa1464880:CDS | 35.0% | |
| ! | AAGTGGGTTTCTATGAGAAA+AGG | + | tig0044696:3686-3705 | Msa1464880:CDS | 35.0% |
| ACAAGGTTCAAAACAGAGAA+AGG | + | tig0044696:3728-3747 | Msa1464880:CDS | 35.0% | |
| CAAGGTTCAAAACAGAGAAA+GGG | + | tig0044696:3729-3748 | Msa1464880:CDS | 35.0% | |
| TCAAAACAGAGAAAGGGAAA+AGG | + | tig0044696:3735-3754 | Msa1464880:CDS | 35.0% | |
| GTTTGTGGAACAGTTATACT+TGG | + | tig0044696:3839-3858 | Msa1464880:intron | 35.0% | |
| AAGAGGCTGACAAAAATTAC+TGG | + | tig0044696:3883-3902 | Msa1464880:CDS | 35.0% | |
| TGAGAAGAAAAGAGGCAAAA+AGG | + | tig0044696:3947-3966 | Msa1464880:CDS | 35.0% | |
| GAAACAGCAACTAAACCAAA+TGG | + | tig0044696:4140-4159 | Msa1464880:CDS | 35.0% | |
| TGAATCTACAGTACCGTTAT+TGG | - | tig0044696:4231-4250 | Msa1464880:intergenic | 35.0% | |
| GACGACAACTATTCTGGATA+CGG | + | tig0044696:1435-1454 | Msa1464880:CDS | 40.0% | |
| GAAAATGGAAACGGTTATGG+CGG | + | tig0044696:1594-1613 | Msa1464880:CDS | 40.0% | |
| AAGGTAACGTTCTTAGGGAA+TGG | + | tig0044696:1685-1704 | Msa1464880:CDS | 40.0% | |
| ! | AAGGAATCTGAAACACTCAC+CGG | - | tig0044696:1713-1732 | Msa1464880:intergenic | 40.0% |
| CAAACGAGATCTAGCATAGA+AGG | - | tig0044696:1732-1751 | Msa1464880:intergenic | 40.0% | |
| TGATTTAGTGAACTCTTGCG+TGG | + | tig0044696:1983-2002 | Msa1464880:intron | 40.0% | |
| !!! | GGGTTAGTTTTATGCTCTGT+TGG | + | tig0044696:2020-2039 | Msa1464880:intron | 40.0% |
| GTTCGTATTCCATAGTTCGT+AGG | + | tig0044696:2060-2079 | Msa1464880:intron | 40.0% | |
| ACCATTGTGAGTGCTTCTAA+CGG | + | tig0044696:2409-2428 | Msa1464880:intron | 40.0% | |
| ACGTGTTGCAACAATGAGAT+AGG | - | tig0044696:2591-2610 | Msa1464880:intergenic | 40.0% | |
| AGTTTCTACCATGTGATTGG+AGG | - | tig0044696:2771-2790 | Msa1464880:intergenic | 40.0% | |
| TGGAGTTTCTACCATGTGAT+TGG | - | tig0044696:2774-2793 | Msa1464880:intergenic | 40.0% | |
| TGGAATGCAAGTTTAGCAAG+AGG | + | tig0044696:2868-2887 | Msa1464880:intron | 40.0% | |
| TGCTATTCAACTAGACGAGA+AGG | + | tig0044696:3609-3628 | Msa1464880:CDS | 40.0% | |
| ACTAGACGAGAAGGAGAAAA+AGG | + | tig0044696:3618-3637 | Msa1464880:CDS | 40.0% | |
| GAAGCTGAGGATTACAAAGT+GGG | + | tig0044696:3670-3689 | Msa1464880:CDS | 40.0% | |
| GCTCAATGTTGAGACAAACA+AGG | + | tig0044696:3711-3730 | Msa1464880:CDS | 40.0% | |
| GCCAACATTGAGAAGAAAAG+AGG | + | tig0044696:3939-3958 | Msa1464880:CDS | 40.0% | |
| ! | GCCTCTTTTCTTCTCAATGT+TGG | - | tig0044696:3943-3962 | Msa1464880:intergenic | 40.0% |
| GAAAAGAGGCAAAAAGGATC+AGG | + | tig0044696:3953-3972 | Msa1464880:CDS | 40.0% | |
| TAAACCAAATGGATCAGCAC+CGG | + | tig0044696:4151-4170 | Msa1464880:CDS | 40.0% | |
| GACAACTATTCTGGATACGG+CGG | + | tig0044696:1438-1457 | Msa1464880:CDS | 45.0% | |
| GTGATCTACAGGGACATCTT+CGG | - | tig0044696:1481-1500 | Msa1464880:intergenic | 45.0% | |
| CTGCTGTTGTGTGATCTACA+GGG | - | tig0044696:1491-1510 | Msa1464880:intergenic | 45.0% | |
| TCGCTGAATCCGAATACATC+CGG | - | tig0044696:1525-1544 | Msa1464880:intergenic | 45.0% | |
| TGTATTCGGATTCAGCGATC+AGG | + | tig0044696:1527-1546 | Msa1464880:CDS | 45.0% | |
| !! | ATCACATGCACTGGTTCGAA+GGG | - | tig0044696:1573-1592 | Msa1464880:intergenic | 45.0% |
| ! | CCATTTTCCATCACATGCAC+TGG | - | tig0044696:1582-1601 | Msa1464880:intergenic | 45.0% |
| ! | CCAGTGCATGTGATGGAAAA+TGG | + | tig0044696:1579-1598 | Msa1464880:CDS | 45.0% |
| CTAAGAACGTTACCTTCCTC+CGG | - | tig0044696:1681-1700 | Msa1464880:intergenic | 45.0% | |
| GGAGGAAGGTAACGTTCTTA+GGG | + | tig0044696:1680-1699 | Msa1464880:CDS | 45.0% | |
| TGCTCTGTTGGATTGCAGTT+TGG | + | tig0044696:2032-2051 | Msa1464880:intron | 45.0% | |
| GTTTGACAACAATGCAGCGT+AGG | + | tig0044696:2324-2343 | Msa1464880:intron | 45.0% | |
| !! | ACCGTTAGAAGCACTCACAA+TGG | - | tig0044696:2413-2432 | Msa1464880:intergenic | 45.0% |
| ! | GAGGTCAAGAGTGTGTGTAA+TGG | - | tig0044696:2752-2771 | Msa1464880:intergenic | 45.0% |
| ACTCTTGACCTCCAATCACA+TGG | + | tig0044696:2760-2779 | Msa1464880:intron | 45.0% | |
| CTTCAGTTGAAAGGGAGATG+TGG | - | tig0044696:2806-2825 | Msa1464880:intergenic | 45.0% | |
| ACTACGTGGGATTGACTACA+AGG | - | tig0044696:3396-3415 | Msa1464880:intergenic | 45.0% | |
| GGAAGCTGAGGATTACAAAG+TGG | + | tig0044696:3669-3688 | Msa1464880:CDS | 45.0% | |
| TCTCAATGTTGGCAACCTCA+CGG | - | tig0044696:3932-3951 | Msa1464880:intergenic | 45.0% | |
| ATATCTGCCGCATCCTAGAA+AGG | - | tig0044696:4034-4053 | Msa1464880:intergenic | 45.0% | |
| CACCTGCTAAAGACTCCAAA+GGG | + | tig0044696:4105-4124 | Msa1464880:CDS | 45.0% | |
| !! | TTCCCTTTGGAGTCTTTAGC+AGG | - | tig0044696:4110-4129 | Msa1464880:intergenic | 45.0% |
| TGCTAAAGACTCCAAAGGGA+AGG | + | tig0044696:4109-4128 | Msa1464880:CDS | 45.0% | |
| AAAGACTCCAAAGGGAAGGA+CGG | + | tig0044696:4113-4132 | Msa1464880:CDS | 45.0% | |
| ! | TTCTTTTCCGTCCTTCCCTT+TGG | - | tig0044696:4123-4142 | Msa1464880:intergenic | 45.0% |
| !! | GGTTTAGGTGCTGATCCATT+TGG | - | tig0044696:4158-4177 | Msa1464880:intergenic | 45.0% |
| GGATCAGCACCTAAACCAAA+TGG | + | tig0044696:4161-4180 | Msa1464880:CDS | 45.0% | |
| !! | GGTGCTGATCCATTTGGTTT+AGG | - | tig0044696:4152-4171 | Msa1464880:intergenic | 45.0% |
| TGTGATTCAGGTGCAACTTC+CGG | - | tig0044696:4194-4213 | Msa1464880:intergenic | 45.0% | |
| TGCACCTGAATCACAACCAA+AGG | + | tig0044696:4199-4218 | Msa1464880:CDS | 45.0% | |
| GCATCCTTTGGTTGTGATTC+AGG | - | tig0044696:4206-4225 | Msa1464880:intergenic | 45.0% | |
| CCAAAGGATGCTGCCAATAA+CGG | + | tig0044696:4215-4234 | Msa1464880:CDS | 45.0% | |
| !! | TATATATAGTAAAAAATATA+AGG | + | tig0044696:2358-2377 | Msa1464880:intron | 5.0% |
| !! | AAAAATTAAAACAAAATATA+TGG | + | tig0044696:2848-2867 | Msa1464880:intron | 5.0% |
| !! | ATAATTATTAAGAATTTAAA+TGG | + | tig0044696:3322-3341 | Msa1464880:intron | 5.0% |
| TTCGTTGACGGTGAAGGACA+TGG | - | tig0044696:1394-1413 | None:intergenic | 50.0% | |
| GGTGAAGTGGTCTTCGTTGA+CGG | - | tig0044696:1406-1425 | None:intergenic | 50.0% | |
| AGAATAGTTGTCGTCGTCGC+CGG | - | tig0044696:1430-1449 | Msa1464880:intergenic | 50.0% | |
| ATCTACAGGGACATCTTCGG+CGG | - | tig0044696:1478-1497 | Msa1464880:intergenic | 50.0% | |
| GCTGCTGTTGTGTGATCTAC+AGG | - | tig0044696:1492-1511 | Msa1464880:intergenic | 50.0% | |
| CCGAATACATCCGGAGATTC+CGG | - | tig0044696:1516-1535 | Msa1464880:intergenic | 50.0% | |
| CCGGAATCTCCGGATGTATT+CGG | + | tig0044696:1513-1532 | Msa1464880:CDS | 50.0% | |
| AAGGGAGACTGAGCGTAACT+CGG | - | tig0044696:1555-1574 | Msa1464880:intergenic | 50.0% | |
| !! | CATCACATGCACTGGTTCGA+AGG | - | tig0044696:1574-1593 | Msa1464880:intergenic | 50.0% |
| CTTCGAACCAGTGCATGTGA+TGG | + | tig0044696:1572-1591 | Msa1464880:CDS | 50.0% | |
| ! | GACGACGTTTTTGTCTCCGA+TGG | + | tig0044696:1624-1643 | Msa1464880:CDS | 50.0% |
| ! | CGTTTTTGTCTCCGATGGTC+CGG | + | tig0044696:1629-1648 | Msa1464880:CDS | 50.0% |
| CGGAGGAAGGTAACGTTCTT+AGG | + | tig0044696:1679-1698 | Msa1464880:CDS | 50.0% | |
| GGGAGATGTGGTGCAATTGT+TGG | - | tig0044696:2794-2813 | Msa1464880:intergenic | 50.0% | |
| GAGGTAGATCACAAGTCTCG+TGG | + | tig0044696:2887-2906 | Msa1464880:intron | 50.0% | |
| TCAATGTTGGCAACCTCACG+GGG | - | tig0044696:3930-3949 | Msa1464880:intergenic | 50.0% | |
| CTCAATGTTGGCAACCTCAC+GGG | - | tig0044696:3931-3950 | Msa1464880:intergenic | 50.0% | |
| CCTTGGAGGACAGTAACTGA+TGG | - | tig0044696:3987-4006 | Msa1464880:intergenic | 50.0% | |
| CCATCAGTTACTGTCCTCCA+AGG | + | tig0044696:3984-4003 | Msa1464880:CDS | 50.0% | |
| GGAGGAATCATGTGAAGTGG+TGG | - | tig0044696:4077-4096 | Msa1464880:intergenic | 50.0% | |
| GGAGGAGGAATCATGTGAAG+TGG | - | tig0044696:4080-4099 | Msa1464880:intergenic | 50.0% | |
| TTGGAGTCTTTAGCAGGTGC+AGG | - | tig0044696:4104-4123 | Msa1464880:intergenic | 50.0% | |
| GCACCTGCTAAAGACTCCAA+AGG | + | tig0044696:4104-4123 | Msa1464880:CDS | 50.0% | |
| !! | ACTTCCGGTGCTGATCCATT+TGG | - | tig0044696:4179-4198 | Msa1464880:intergenic | 50.0% |
| CCGTTATTGGCAGCATCCTT+TGG | - | tig0044696:4218-4237 | Msa1464880:intergenic | 50.0% | |
| GTGGTCTTCGTTGACGGTGA+AGG | - | tig0044696:1400-1419 | None:intergenic | 55.0% | |
| AACGAAGACCACTTCACCGC+CGG | + | tig0044696:1408-1427 | Msa1464880:CDS | 55.0% | |
| GGCGACGACGACAACTATTC+TGG | + | tig0044696:1429-1448 | Msa1464880:CDS | 55.0% | |
| AGATCACACAACAGCAGCGC+CGG | + | tig0044696:1494-1513 | Msa1464880:CDS | 55.0% | |
| ACGTTCTTAGGGAATGGCGC+CGG | + | tig0044696:1691-1710 | Msa1464880:CDS | 55.0% | |
| !! | TGCGTGGTGACGAGCTTTTG+AGG | + | tig0044696:1999-2018 | Msa1464880:intron | 55.0% |
| !! | GCGTGGTGACGAGCTTTTGA+GGG | + | tig0044696:2000-2019 | Msa1464880:intron | 55.0% |
| TGGGGAGATAATTCCCCGTG+AGG | + | tig0044696:3914-3933 | Msa1464880:CDS | 55.0% | |
| GCAAACCCACCGACCTTTCT+AGG | + | tig0044696:4018-4037 | Msa1464880:CDS | 55.0% | |
| CGCATCCTAGAAAGGTCGGT+GGG | - | tig0044696:4026-4045 | Msa1464880:intergenic | 55.0% | |
| !! | CCACCGACCTTTCTAGGATG+CGG | + | tig0044696:4024-4043 | Msa1464880:CDS | 55.0% |
| CTGCCGCATCCTAGAAAGGT+CGG | - | tig0044696:4030-4049 | Msa1464880:intergenic | 55.0% | |
| TCTTTAGCAGGTGCAGGTGG+AGG | - | tig0044696:4098-4117 | Msa1464880:intergenic | 55.0% | |
| GAGTCTTTAGCAGGTGCAGG+TGG | - | tig0044696:4101-4120 | Msa1464880:intergenic | 55.0% | |
| GTGGCAGGAGCTTCTTTCTG+AGG | - | tig0044696:4254-4273 | Msa1464880:intergenic | 55.0% | |
| GAAAGAAGCTCCTGCCACTG+AGG | + | tig0044696:4256-4275 | Msa1464880:CDS | 55.0% | |
| ATAGTTGTCGTCGTCGCCGG+CGG | - | tig0044696:1427-1446 | Msa1464880:intergenic | 60.0% | |
| ! | AACAGCAGCGCCGGAATCTC+CGG | + | tig0044696:1503-1522 | Msa1464880:CDS | 60.0% |
| !! | AGGAGGAAGCACCGGACCAT+CGG | - | tig0044696:1643-1662 | Msa1464880:intergenic | 60.0% |
| ! | TCAGCAGGAGGAGGAAGCAC+CGG | - | tig0044696:1651-1670 | Msa1464880:intergenic | 60.0% |
| GCTTCCTCCTCCTGCTGAGA+TGG | + | tig0044696:1653-1672 | Msa1464880:CDS | 60.0% | |
| TCCTCCTGCTGAGATGGAGC+CGG | + | tig0044696:1659-1678 | Msa1464880:CDS | 60.0% | |
| !! | GTTTGCCTGGCTTTGGGCCT+TGG | - | tig0044696:4004-4023 | Msa1464880:intergenic | 60.0% |
| ! | CGGTGGGTTTGCCTGGCTTT+GGG | - | tig0044696:4010-4029 | Msa1464880:intergenic | 60.0% |
| ! | TCGGTGGGTTTGCCTGGCTT+TGG | - | tig0044696:4011-4030 | Msa1464880:intergenic | 60.0% |
| ! | GAAAGGTCGGTGGGTTTGCC+TGG | - | tig0044696:4017-4036 | Msa1464880:intergenic | 60.0% |
| CCGCATCCTAGAAAGGTCGG+TGG | - | tig0044696:4027-4046 | Msa1464880:intergenic | 60.0% | |
| TTAGCAGGTGCAGGTGGAGG+AGG | - | tig0044696:4095-4114 | Msa1464880:intergenic | 60.0% | |
| TGCAGCAGACTGCTCCTCAG+TGG | - | tig0044696:4273-4292 | Msa1464880:intergenic | 60.0% | |
| GGCTCCATCTCAGCAGGAGG+AGG | - | tig0044696:1660-1679 | Msa1464880:intergenic | 65.0% | |
| TCCGGCTCCATCTCAGCAGG+AGG | - | tig0044696:1663-1682 | Msa1464880:intergenic | 65.0% | |
| TCCTGCTGAGATGGAGCCGG+AGG | + | tig0044696:1662-1681 | Msa1464880:CDS | 65.0% | |
| TCCTCCGGCTCCATCTCAGC+AGG | - | tig0044696:1666-1685 | Msa1464880:intergenic | 65.0% | |
| GCTGAGATGGAGCCGGAGGA+AGG | + | tig0044696:1666-1685 | Msa1464880:CDS | 65.0% | |
| GTCCTCCAAGGCCCAAAGCC+AGG | + | tig0044696:3996-4015 | Msa1464880:CDS | 65.0% | |
| !! | TGCCTGGCTTTGGGCCTTGG+AGG | - | tig0044696:4001-4020 | Msa1464880:intergenic | 65.0% |
| GCAGACTGCTCCTCAGTGGC+AGG | - | tig0044696:4269-4288 | Msa1464880:intergenic | 65.0% | |
| CGTCGTCGCCGGCGGTGAAG+TGG | - | tig0044696:1419-1438 | Msa1464880:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044696 | gene | 1309 | 4535 | 1309 | ID=Msa1464880;Name=Msa1464880 |
| tig0044696 | mRNA | 1309 | 4535 | 1309 | ID=Msa1464880-mRNA-1;Parent=Msa1464880;Name=Msa1464880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=84|1|1|1|1|1|3|240|305 |
| tig0044696 | exon | 1309 | 1712 | 1309 | ID=Msa1464880-mRNA-1:exon:24610;Parent=Msa1464880-mRNA-1 |
| tig0044696 | exon | 3603 | 3756 | 3603 | ID=Msa1464880-mRNA-1:exon:24611;Parent=Msa1464880-mRNA-1 |
| tig0044696 | exon | 3852 | 4535 | 3852 | ID=Msa1464880-mRNA-1:exon:24612;Parent=Msa1464880-mRNA-1 |
| tig0044696 | five_prime_UTR | 1309 | 1392 | 1309 | ID=Msa1464880-mRNA-1:five_prime_utr;Parent=Msa1464880-mRNA-1 |
| tig0044696 | CDS | 1393 | 1712 | 1393 | ID=Msa1464880-mRNA-1:cds;Parent=Msa1464880-mRNA-1 |
| tig0044696 | CDS | 3603 | 3756 | 3603 | ID=Msa1464880-mRNA-1:cds;Parent=Msa1464880-mRNA-1 |
| tig0044696 | CDS | 3852 | 4295 | 3852 | ID=Msa1464880-mRNA-1:cds;Parent=Msa1464880-mRNA-1 |
| tig0044696 | three_prime_UTR | 4296 | 4535 | 4296 | ID=Msa1464880-mRNA-1:three_prime_utr;Parent=Msa1464880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
