AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0124910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124910 MtrunA17_Chr1g0186151 98.418 316 5 0 1 316 1 316 0.0 632
Msa0124910 MtrunA17_Chr1g0168311 69.868 302 75 3 1 298 1 290 1.90e-146 414
Msa0124910 MtrunA17_Chr7g0262011 48.789 289 131 4 11 298 83 355 1.65e-88 269
Msa0124910 MtrunA17_Chr1g0190321 39.130 299 156 9 12 298 10 294 2.57e-63 202
Msa0124910 MtrunA17_Chr5g0434531 29.553 291 185 5 9 297 4 276 3.49e-34 126
Msa0124910 MtrunA17_Chr3g0110311 30.822 292 172 6 6 293 5 270 1.07e-33 124
Msa0124910 MtrunA17_Chr7g0230381 28.826 281 166 8 5 275 11 267 1.51e-30 116
Msa0124910 MtrunA17_Chr8g0391511 28.881 277 182 5 26 299 25 289 1.79e-30 116
Msa0124910 MtrunA17_Chr7g0234231 22.835 254 158 4 8 241 4 239 1.17e-16 78.2
Msa0124910 MtrunA17_Chr1g0205771 25.769 260 166 8 47 290 54 302 1.37e-15 77.4
Msa0124910 MtrunA17_Chr1g0206291 25.101 247 160 9 9 237 23 262 5.99e-15 75.5
Msa0124910 MtrunA17_Chr6g0475001 24.149 323 188 11 1 281 1 308 9.77e-15 74.7
Msa0124910 MtrunA17_Chr5g0394001 26.168 214 143 4 38 237 35 247 3.29e-14 73.2
Msa0124910 MtrunA17_Chr3g0109411 27.679 224 149 5 21 234 18 238 4.61e-14 72.8
Msa0124910 MtrunA17_Chr6g0474901 23.462 260 159 5 44 270 33 285 9.32e-14 72.0
Msa0124910 MtrunA17_Chr6g0475201 23.108 251 175 6 1 237 1 247 2.08e-13 70.9
Msa0124910 MtrunA17_Chr3g0081001 22.785 237 170 5 8 234 7 240 2.02e-12 67.8
Msa0124910 MtrunA17_Chr5g0428531 25.103 243 160 9 9 236 9 244 2.26e-12 66.6
Msa0124910 MtrunA17_Chr5g0394021 23.045 243 154 6 68 292 68 295 2.32e-12 67.8
Msa0124910 MtrunA17_Chr1g0206351 25.541 231 135 7 32 237 33 251 2.77e-12 67.4
Msa0124910 MtrunA17_Chr6g0475091 26.050 238 143 7 23 237 30 257 4.08e-12 67.0
Msa0124910 MtrunA17_Chr6g0474871 25.581 301 172 12 6 270 5 289 1.33e-11 65.5
Msa0124910 MtrunA17_Chr6g0474861 25.000 240 161 7 11 236 6 240 3.15e-11 64.3
Msa0124910 MtrunA17_Chr6g0474971 24.809 262 153 9 44 270 33 285 3.40e-11 63.2
Msa0124910 MtrunA17_Chr3g0081031 23.792 269 167 9 12 252 22 280 4.70e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0124910 AT1G04520.1 67.230 296 89 2 8 297 10 303 1.27e-135 387
Msa0124910 AT2G33330.1 65.116 301 100 3 1 297 1 300 9.08e-134 382
Msa0124910 AT5G43980.1 44.330 291 136 5 25 300 20 299 7.48e-78 240
Msa0124910 AT3G04370.1 35.738 305 154 6 24 298 25 317 7.97e-59 192
Msa0124910 AT3G04370.2 35.197 304 156 5 24 298 25 316 9.01e-59 191
Msa0124910 AT5G37660.1 30.996 271 168 6 11 279 15 268 4.51e-34 126
Msa0124910 AT5G37660.2 30.996 271 168 6 11 279 15 268 5.23e-34 126
Msa0124910 AT3G60720.3 29.044 272 165 6 33 296 29 280 2.68e-31 119
Msa0124910 AT3G60720.1 28.889 270 164 6 33 294 29 278 2.83e-30 116
Msa0124910 AT2G01660.3 29.966 297 185 9 11 300 7 287 5.05e-29 113
Msa0124910 AT2G01660.1 30.201 298 184 10 11 300 7 288 5.54e-29 113
Msa0124910 AT2G01660.2 31.034 232 142 7 26 250 20 240 7.82e-26 103
Msa0124910 AT1G70690.1 28.571 301 183 8 10 296 9 291 2.05e-24 100
Msa0124910 AT3G60720.2 27.885 208 139 4 33 233 29 232 7.11e-24 98.2
Msa0124910 AT5G48540.1 23.077 221 156 5 34 241 24 243 1.88e-16 78.2
Msa0124910 AT5G40380.1 27.946 297 175 12 9 296 12 278 4.55e-15 76.3
Msa0124910 AT5G40380.3 27.946 297 175 12 9 296 12 278 5.43e-15 75.9
Msa0124910 AT5G40380.2 27.946 297 175 12 9 296 12 278 5.80e-15 75.9
Msa0124910 AT4G05200.1 23.125 320 221 10 12 309 11 327 8.97e-15 75.5
Msa0124910 AT4G05200.2 23.125 320 221 10 12 309 29 345 9.16e-15 75.5
Msa0124910 AT5G41290.1 24.468 282 192 6 6 272 5 280 7.87e-13 68.2

Find 92 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATATGAATGAATATTT+TGG 0.162498 1_3:+52776271 Msa0124910:three_prime_UTR
TCTGCAAGAGTTCAGCTTTC+AGG 0.163538 1_3:+52774856 Msa0124910:CDS
GCTCTCTCTTCTTCTGGTTT+TGG 0.207236 1_3:-52774236 None:intergenic
TGCATTGCTCTCTCTTCTTC+TGG 0.207247 1_3:-52774242 None:intergenic
TCTGGTTACTCTTCATCTTT+TGG 0.217123 1_3:+52775270 Msa0124910:CDS
GTATTGGGATTCACTTTCTT+TGG 0.253502 1_3:-52774212 None:intergenic
ATCCAAAATATTCATTCATA+TGG 0.266393 1_3:-52776273 None:intergenic
GGAAAAGAATCAAATGGTTT+TGG 0.277426 1_3:-52774351 None:intergenic
GAATGTGGAAGTTCTATTTC+AGG 0.278336 1_3:+52775150 Msa0124910:CDS
GATTCTTGATATATATCTTT+TGG 0.281699 1_3:+52776065 Msa0124910:three_prime_UTR
GAATCAAAACATGGTTGTTT+TGG 0.289029 1_3:-52774459 None:intergenic
TGGGAGTAAGGAAAAGGATT+TGG 0.320657 1_3:-52774272 None:intergenic
AAGACTGTGGCAATAATATT+AGG 0.324267 1_3:+52775784 Msa0124910:CDS
GGTGGTGGATCATCTTCTTC+TGG 0.327218 1_3:+52775252 Msa0124910:CDS
TATTGGGATTCACTTTCTTT+GGG 0.331068 1_3:-52774211 None:intergenic
CCACCCTTTGGAACCCCATT+AGG 0.331693 1_3:-52775216 None:intergenic
AATCCACCTCAAGAAGAATT+TGG 0.332910 1_3:-52776042 None:intergenic
AGATACCTGTGATGCTGTTT+TGG 0.333639 1_3:-52774741 None:intergenic
TAGACCAAAGTTGTGTAATC+AGG 0.371990 1_3:-52774589 None:intergenic
AAGATGATGATTTAGAGAAA+TGG 0.375671 1_3:-52774564 None:intergenic
GGGAGTAAGGAAAAGGATTT+GGG 0.378219 1_3:-52774271 None:intergenic
CAAGACTAATTCTTGTAGTT+AGG 0.381469 1_3:+52776156 Msa0124910:three_prime_UTR
GATTGTGAATATGCACCATT+TGG 0.394933 1_3:-52774643 None:intergenic
TCCAAAATATTCATTCATAT+GGG 0.397991 1_3:-52776272 None:intergenic
AGATGATGATTTAGAGAAAT+GGG 0.405156 1_3:-52774563 None:intergenic
AAGGGTGGTCATTCTTCATC+TGG 0.421635 1_3:+52775231 Msa0124910:CDS
TTCTCCTGATTACACAACTT+TGG 0.429549 1_3:+52774585 Msa0124910:CDS
TGGTATCATTACAAGGGAAA+AGG 0.439290 1_3:+52776240 Msa0124910:three_prime_UTR
GAAGAACAAAAGAAGAAAGA+GGG 0.456695 1_3:-52774527 None:intergenic
TTATCAAGCTTTGTATGTGA+TGG 0.456880 1_3:+52775053 Msa0124910:CDS
AGGTTCTTCAAAACAACAAC+TGG 0.461798 1_3:+52774712 Msa0124910:CDS
AATGGTGTTGTGAGTAATCA+TGG 0.467963 1_3:+52775015 Msa0124910:CDS
CATAGTTTGTCTGAGAGAAC+TGG 0.468018 1_3:-52774820 None:intergenic
ACAACAAATGCTGCTGGAAG+AGG 0.468669 1_3:+52774952 Msa0124910:CDS
TACATGCTGTACGAGGTTGC+TGG 0.468867 1_3:+52774883 Msa0124910:CDS
GGGAGATAGAGAAAGAATCT+AGG 0.469905 1_3:+52776116 Msa0124910:three_prime_UTR
GGTCAGTGTGAGGGTGATGT+TGG 0.474760 1_3:+52775075 Msa0124910:CDS
GATGAAGAATGACCACCCTT+TGG 0.474944 1_3:-52775228 None:intergenic
AAGCTGAACTCTTGCAGAGA+TGG 0.484956 1_3:-52774851 None:intergenic
CAGATTCTCTTCAAGACTTG+TGG 0.485266 1_3:+52774928 Msa0124910:CDS
ATTCACTTTCTTTGGGTGCA+AGG 0.487590 1_3:-52774204 None:intergenic
TGAAGAACAAAAGAAGAAAG+AGG 0.494984 1_3:-52774528 None:intergenic
TTCAAAACAACAACTGGTAA+TGG 0.498720 1_3:+52774718 Msa0124910:CDS
GGTTAAGGAAAAGAATCAAA+TGG 0.504695 1_3:-52774357 None:intergenic
TGTGGAACAACAAATGCTGC+TGG 0.508236 1_3:+52774946 Msa0124910:CDS
AGATTTGTGGTAAATAGACT+TGG 0.510548 1_3:+52776095 Msa0124910:three_prime_UTR
TTGTGAGATCTCCTCTGCAT+TGG 0.514398 1_3:-52774765 None:intergenic
AGAATATGGGAGTAAGGAAA+AGG 0.515515 1_3:-52774278 None:intergenic
GGTCATTCTTCATCTGGTGG+TGG 0.515877 1_3:+52775237 Msa0124910:CDS
GTTATGACAGGACAAAATAC+AGG 0.519094 1_3:+52775760 Msa0124910:intron
AATCTAGGACTGTTGAATGT+GGG 0.519681 1_3:+52776131 Msa0124910:three_prime_UTR
AATGGCCAAAACAGCATCAC+AGG 0.526879 1_3:+52774736 Msa0124910:CDS
ATCTGCATCCCTGAAACTTG+TGG 0.533086 1_3:-52774910 None:intergenic
TTATCCTAATGGGGTTCCAA+AGG 0.535083 1_3:+52775212 Msa0124910:CDS
TATCAAGCTTTGTATGTGAT+GGG 0.536644 1_3:+52775054 Msa0124910:CDS
GATGTTGGTGATTCTGATTG+TGG 0.539277 1_3:+52775090 Msa0124910:CDS
TATCCTAATGGGGTTCCAAA+GGG 0.541401 1_3:+52775213 Msa0124910:CDS
GAAACATTCACAGATCCAAA+TGG 0.542666 1_3:+52774628 Msa0124910:CDS
TTATATGCTTGCTATTTGCA+AGG 0.544026 1_3:+52775833 Msa0124910:CDS
TTATTGACTGTAGAAGAAGA+TGG 0.558415 1_3:+52776006 Msa0124910:CDS
AGGCCAAATTCTTCTTGAGG+TGG 0.559342 1_3:+52776039 Msa0124910:exon
GAATCTAGGACTGTTGAATG+TGG 0.563094 1_3:+52776130 Msa0124910:three_prime_UTR
GTGTTGAGATTCAGAGAGGG+GGG 0.567503 1_3:-52774386 None:intergenic
TACACAACTTTGGTCTACAA+AGG 0.569043 1_3:+52774595 Msa0124910:CDS
GATTTGTGGTAAATAGACTT+GGG 0.575361 1_3:+52776096 Msa0124910:three_prime_UTR
CAACAAATGCTGCTGGAAGA+GGG 0.576463 1_3:+52774953 Msa0124910:CDS
TATGTGATGGGTCAGTGTGA+GGG 0.578918 1_3:+52775066 Msa0124910:CDS
TTGTGTTGAGATTCAGAGAG+GGG 0.581530 1_3:-52774388 None:intergenic
TGTGTTGAGATTCAGAGAGG+GGG 0.585649 1_3:-52774387 None:intergenic
GGTGGTCATTCTTCATCTGG+TGG 0.587392 1_3:+52775234 Msa0124910:CDS
TGTTGAGATTCAGAGAGGGG+GGG 0.588145 1_3:-52774385 None:intergenic
GTATGTGATGGGTCAGTGTG+AGG 0.592839 1_3:+52775065 Msa0124910:CDS
CTTGTGTTGAGATTCAGAGA+GGG 0.593113 1_3:-52774389 None:intergenic
AAGAACAAAAGAAGAAAGAG+GGG 0.594004 1_3:-52774526 None:intergenic
CAAAGAGCTCAAGTTGAATG+TGG 0.597170 1_3:+52775135 Msa0124910:CDS
TGGAGGCCAAATTCTTCTTG+AGG 0.599401 1_3:+52776036 Msa0124910:CDS
AAGAAGATGGTTTACTGTGG+AGG 0.604602 1_3:+52776019 Msa0124910:CDS
CCAAAATATTCATTCATATG+GGG 0.607107 1_3:-52776271 None:intergenic
ATCTAGGACTGTTGAATGTG+GGG 0.608364 1_3:+52776132 Msa0124910:three_prime_UTR
ATTAGGAGGTATAGCTGCTG+TGG 0.619016 1_3:+52775801 Msa0124910:CDS
AAATATTCATTCATATGGGG+AGG 0.619547 1_3:-52776268 None:intergenic
CCTAATGGGGTTCCAAAGGG+TGG 0.628137 1_3:+52775216 Msa0124910:CDS
ACAGGTATCTTCCAATGCAG+AGG 0.638244 1_3:+52774754 Msa0124910:CDS
ACTGTGGCAATAATATTAGG+AGG 0.641949 1_3:+52775787 Msa0124910:CDS
TGATGAAGAAACGTGATGGT+AGG 0.645756 1_3:+52775860 Msa0124910:CDS
AGGTTGTTACATGCTGTACG+AGG 0.659964 1_3:+52774876 Msa0124910:CDS
AATTTGATGAAGAAACGTGA+TGG 0.662013 1_3:+52775856 Msa0124910:CDS
GTTCTCTCAGACAAACTATG+TGG 0.667348 1_3:+52774823 Msa0124910:CDS
ATGGAGAGAGAATCAAAACA+TGG 0.673903 1_3:-52774468 None:intergenic
GCTTGTGTTGAGATTCAGAG+AGG 0.675745 1_3:-52774390 None:intergenic
TAGAAGAAGATGGTTTACTG+TGG 0.689143 1_3:+52776016 Msa0124910:CDS
ACAAAATACAGGAAAGACTG+TGG 0.709113 1_3:+52775771 Msa0124910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGATTTTTTGAGAAA+TGG - chr1_3:52774490-52774509 None:intergenic 15.0%
!! ATTTCTCAAAAAATCAAAAA+TGG + chr1_3:52774489-52774508 Msa0124910:exon 15.0%
!! TTTCTCAAAAAATCAAAAAT+GGG + chr1_3:52774490-52774509 Msa0124910:exon 15.0%
!!! CAATTTTCTCAAATTATTAT+CGG - chr1_3:52775461-52775480 None:intergenic 15.0%
!!! ATTTTTGATTTTTTGAGAAA+TGG - chr1_3:52774490-52774509 None:intergenic 15.0%
!! ATTTCTCAAAAAATCAAAAA+TGG + chr1_3:52774489-52774508 Msa0124910:exon 15.0%
!! TTTCTCAAAAAATCAAAAAT+GGG + chr1_3:52774490-52774509 Msa0124910:exon 15.0%
!!! CAATTTTCTCAAATTATTAT+CGG - chr1_3:52775461-52775480 None:intergenic 15.0%
!!! TTTTTGTTTTTGCAGAATAT+GGG - chr1_3:52774294-52774313 None:intergenic 20.0%
!!! TTTTTTGTTTTTGCAGAATA+TGG - chr1_3:52774295-52774314 None:intergenic 20.0%
!!! AGTTTTAGTTATTATCCTAA+TGG + chr1_3:52775201-52775220 Msa0124910:CDS 20.0%
!!! GTTTTAGTTATTATCCTAAT+GGG + chr1_3:52775202-52775221 Msa0124910:CDS 20.0%
!!! TTTTAGTTATTATCCTAATG+GGG + chr1_3:52775203-52775222 Msa0124910:CDS 20.0%
!! TTATAACACATGAACAATTA+AGG - chr1_3:52775652-52775671 None:intergenic 20.0%
!!! GATTCTTGATATATATCTTT+TGG + chr1_3:52776065-52776084 Msa0124910:three_prime_UTR 20.0%
!!! AGATTTTGTTGTGAAAAAAA+TGG + chr1_3:52776184-52776203 Msa0124910:three_prime_UTR 20.0%
!! TCCAAAATATTCATTCATAT+GGG - chr1_3:52776275-52776294 None:intergenic 20.0%
!! ATCCAAAATATTCATTCATA+TGG - chr1_3:52776276-52776295 None:intergenic 20.0%
!!! TTTTTGTTTTTGCAGAATAT+GGG - chr1_3:52774294-52774313 None:intergenic 20.0%
!!! TTTTTTGTTTTTGCAGAATA+TGG - chr1_3:52774295-52774314 None:intergenic 20.0%
!!! AGTTTTAGTTATTATCCTAA+TGG + chr1_3:52775201-52775220 Msa0124910:CDS 20.0%
!!! GTTTTAGTTATTATCCTAAT+GGG + chr1_3:52775202-52775221 Msa0124910:CDS 20.0%
!!! TTTTAGTTATTATCCTAATG+GGG + chr1_3:52775203-52775222 Msa0124910:CDS 20.0%
!! TTATAACACATGAACAATTA+AGG - chr1_3:52775652-52775671 None:intergenic 20.0%
!!! GATTCTTGATATATATCTTT+TGG + chr1_3:52776065-52776084 Msa0124910:three_prime_UTR 20.0%
!!! AGATTTTGTTGTGAAAAAAA+TGG + chr1_3:52776184-52776203 Msa0124910:three_prime_UTR 20.0%
!! TCCAAAATATTCATTCATAT+GGG - chr1_3:52776275-52776294 None:intergenic 20.0%
!! ATCCAAAATATTCATTCATA+TGG - chr1_3:52776276-52776295 None:intergenic 20.0%
!!! AATCAAATGGTTTTGGTTTT+TGG - chr1_3:52774347-52774366 None:intergenic 25.0%
! AGATGATGATTTAGAGAAAT+GGG - chr1_3:52774566-52774585 None:intergenic 25.0%
! AAGATGATGATTTAGAGAAA+TGG - chr1_3:52774567-52774586 None:intergenic 25.0%
!!! TATCTATTGATTCTGAATGA+TGG - chr1_3:52775313-52775332 None:intergenic 25.0%
! TCAGAATCAATAGATAAGAT+TGG + chr1_3:52775317-52775336 Msa0124910:intron 25.0%
!!! ATAAGATTGGTTTCAATTCT+GGG + chr1_3:52775330-52775349 Msa0124910:intron 25.0%
! TATATATAGTTTCACACAGA+AGG + chr1_3:52775591-52775610 Msa0124910:intron 25.0%
! AACTCTAATTAATCATTGAC+TGG + chr1_3:52775721-52775740 Msa0124910:intron 25.0%
!!! TTGTACATGGTTTTACTATA+TGG + chr1_3:52775890-52775909 Msa0124910:intron 25.0%
!!! TGAAAGTGAGAATTGTTTTT+TGG + chr1_3:52776220-52776239 Msa0124910:three_prime_UTR 25.0%
!!! TGTTTTTTGGTATCATTACA+AGG + chr1_3:52776233-52776252 Msa0124910:three_prime_UTR 25.0%
!!! GTTTTTTGGTATCATTACAA+GGG + chr1_3:52776234-52776253 Msa0124910:three_prime_UTR 25.0%
! CCAAAATATTCATTCATATG+GGG - chr1_3:52776274-52776293 None:intergenic 25.0%
!!! AATCAAATGGTTTTGGTTTT+TGG - chr1_3:52774347-52774366 None:intergenic 25.0%
! AGATGATGATTTAGAGAAAT+GGG - chr1_3:52774566-52774585 None:intergenic 25.0%
! AAGATGATGATTTAGAGAAA+TGG - chr1_3:52774567-52774586 None:intergenic 25.0%
!!! TATCTATTGATTCTGAATGA+TGG - chr1_3:52775313-52775332 None:intergenic 25.0%
! TCAGAATCAATAGATAAGAT+TGG + chr1_3:52775317-52775336 Msa0124910:intron 25.0%
!!! ATAAGATTGGTTTCAATTCT+GGG + chr1_3:52775330-52775349 Msa0124910:intron 25.0%
! TATATATAGTTTCACACAGA+AGG + chr1_3:52775591-52775610 Msa0124910:intron 25.0%
! AACTCTAATTAATCATTGAC+TGG + chr1_3:52775721-52775740 Msa0124910:intron 25.0%
!!! TTGTACATGGTTTTACTATA+TGG + chr1_3:52775890-52775909 Msa0124910:intron 25.0%
!!! TGAAAGTGAGAATTGTTTTT+TGG + chr1_3:52776220-52776239 Msa0124910:three_prime_UTR 25.0%
!!! TGTTTTTTGGTATCATTACA+AGG + chr1_3:52776233-52776252 Msa0124910:three_prime_UTR 25.0%
!!! GTTTTTTGGTATCATTACAA+GGG + chr1_3:52776234-52776253 Msa0124910:three_prime_UTR 25.0%
! CCAAAATATTCATTCATATG+GGG - chr1_3:52776274-52776293 None:intergenic 25.0%
TATTGGGATTCACTTTCTTT+GGG - chr1_3:52774214-52774233 None:intergenic 30.0%
!!! ATGGTTTTGGTTTTTGGTTT+GGG - chr1_3:52774341-52774360 None:intergenic 30.0%
!!! AATGGTTTTGGTTTTTGGTT+TGG - chr1_3:52774342-52774361 None:intergenic 30.0%
! GGAAAAGAATCAAATGGTTT+TGG - chr1_3:52774354-52774373 None:intergenic 30.0%
GGTTAAGGAAAAGAATCAAA+TGG - chr1_3:52774360-52774379 None:intergenic 30.0%
!!! TTTGGTTTTTGGAGGAAAAA+AGG - chr1_3:52774444-52774463 None:intergenic 30.0%
!!! AACATGGTTGTTTTGGTTTT+TGG - chr1_3:52774455-52774474 None:intergenic 30.0%
! GAATCAAAACATGGTTGTTT+TGG - chr1_3:52774462-52774481 None:intergenic 30.0%
AAGAACAAAAGAAGAAAGAG+GGG - chr1_3:52774529-52774548 None:intergenic 30.0%
GAAGAACAAAAGAAGAAAGA+GGG - chr1_3:52774530-52774549 None:intergenic 30.0%
TGAAGAACAAAAGAAGAAAG+AGG - chr1_3:52774531-52774550 None:intergenic 30.0%
!! TTTTGTGGATTGTGAAACTA+AGG - chr1_3:52774689-52774708 None:intergenic 30.0%
TTTCACAATCCACAAAAACA+AGG + chr1_3:52774692-52774711 Msa0124910:CDS 30.0%
!!! TTTGAAGAACCTTGTTTTTG+TGG - chr1_3:52774704-52774723 None:intergenic 30.0%
TTCAAAACAACAACTGGTAA+TGG + chr1_3:52774718-52774737 Msa0124910:CDS 30.0%
! TTATCAAGCTTTGTATGTGA+TGG + chr1_3:52775053-52775072 Msa0124910:CDS 30.0%
! TATCAAGCTTTGTATGTGAT+GGG + chr1_3:52775054-52775073 Msa0124910:CDS 30.0%
!! GATAAGATTGGTTTCAATTC+TGG + chr1_3:52775329-52775348 Msa0124910:intron 30.0%
TCTCAAATTATTATCGGTGT+CGG - chr1_3:52775455-52775474 None:intergenic 30.0%
AAGACTGTGGCAATAATATT+AGG + chr1_3:52775784-52775803 Msa0124910:CDS 30.0%
!! TTATATGCTTGCTATTTGCA+AGG + chr1_3:52775833-52775852 Msa0124910:CDS 30.0%
AATTTGATGAAGAAACGTGA+TGG + chr1_3:52775856-52775875 Msa0124910:CDS 30.0%
! TTATTGACTGTAGAAGAAGA+TGG + chr1_3:52776006-52776025 Msa0124910:CDS 30.0%
AGATTTGTGGTAAATAGACT+TGG + chr1_3:52776095-52776114 Msa0124910:three_prime_UTR 30.0%
GATTTGTGGTAAATAGACTT+GGG + chr1_3:52776096-52776115 Msa0124910:three_prime_UTR 30.0%
CAAGACTAATTCTTGTAGTT+AGG + chr1_3:52776156-52776175 Msa0124910:three_prime_UTR 30.0%
AAATATTCATTCATATGGGG+AGG - chr1_3:52776271-52776290 None:intergenic 30.0%
! CCCCATATGAATGAATATTT+TGG + chr1_3:52776271-52776290 Msa0124910:three_prime_UTR 30.0%
TATTGGGATTCACTTTCTTT+GGG - chr1_3:52774214-52774233 None:intergenic 30.0%
!!! ATGGTTTTGGTTTTTGGTTT+GGG - chr1_3:52774341-52774360 None:intergenic 30.0%
!!! AATGGTTTTGGTTTTTGGTT+TGG - chr1_3:52774342-52774361 None:intergenic 30.0%
! GGAAAAGAATCAAATGGTTT+TGG - chr1_3:52774354-52774373 None:intergenic 30.0%
GGTTAAGGAAAAGAATCAAA+TGG - chr1_3:52774360-52774379 None:intergenic 30.0%
!!! TTTGGTTTTTGGAGGAAAAA+AGG - chr1_3:52774444-52774463 None:intergenic 30.0%
!!! AACATGGTTGTTTTGGTTTT+TGG - chr1_3:52774455-52774474 None:intergenic 30.0%
! GAATCAAAACATGGTTGTTT+TGG - chr1_3:52774462-52774481 None:intergenic 30.0%
AAGAACAAAAGAAGAAAGAG+GGG - chr1_3:52774529-52774548 None:intergenic 30.0%
GAAGAACAAAAGAAGAAAGA+GGG - chr1_3:52774530-52774549 None:intergenic 30.0%
TGAAGAACAAAAGAAGAAAG+AGG - chr1_3:52774531-52774550 None:intergenic 30.0%
!! TTTTGTGGATTGTGAAACTA+AGG - chr1_3:52774689-52774708 None:intergenic 30.0%
TTTCACAATCCACAAAAACA+AGG + chr1_3:52774692-52774711 Msa0124910:CDS 30.0%
!!! TTTGAAGAACCTTGTTTTTG+TGG - chr1_3:52774704-52774723 None:intergenic 30.0%
TTCAAAACAACAACTGGTAA+TGG + chr1_3:52774718-52774737 Msa0124910:CDS 30.0%
! TTATCAAGCTTTGTATGTGA+TGG + chr1_3:52775053-52775072 Msa0124910:CDS 30.0%
! TATCAAGCTTTGTATGTGAT+GGG + chr1_3:52775054-52775073 Msa0124910:CDS 30.0%
!! GATAAGATTGGTTTCAATTC+TGG + chr1_3:52775329-52775348 Msa0124910:intron 30.0%
TCTCAAATTATTATCGGTGT+CGG - chr1_3:52775455-52775474 None:intergenic 30.0%
AAGACTGTGGCAATAATATT+AGG + chr1_3:52775784-52775803 Msa0124910:CDS 30.0%
!! TTATATGCTTGCTATTTGCA+AGG + chr1_3:52775833-52775852 Msa0124910:CDS 30.0%
AATTTGATGAAGAAACGTGA+TGG + chr1_3:52775856-52775875 Msa0124910:CDS 30.0%
! TTATTGACTGTAGAAGAAGA+TGG + chr1_3:52776006-52776025 Msa0124910:CDS 30.0%
AGATTTGTGGTAAATAGACT+TGG + chr1_3:52776095-52776114 Msa0124910:three_prime_UTR 30.0%
GATTTGTGGTAAATAGACTT+GGG + chr1_3:52776096-52776115 Msa0124910:three_prime_UTR 30.0%
CAAGACTAATTCTTGTAGTT+AGG + chr1_3:52776156-52776175 Msa0124910:three_prime_UTR 30.0%
AAATATTCATTCATATGGGG+AGG - chr1_3:52776271-52776290 None:intergenic 30.0%
! CCCCATATGAATGAATATTT+TGG + chr1_3:52776271-52776290 Msa0124910:three_prime_UTR 30.0%
GTATTGGGATTCACTTTCTT+TGG - chr1_3:52774215-52774234 None:intergenic 35.0%
!!! TCTTCTGGTTTTGGTGTATT+GGG - chr1_3:52774230-52774249 None:intergenic 35.0%
!!! TTCTTCTGGTTTTGGTGTAT+TGG - chr1_3:52774231-52774250 None:intergenic 35.0%
AGAATATGGGAGTAAGGAAA+AGG - chr1_3:52774281-52774300 None:intergenic 35.0%
! TTTTGCAGAATATGGGAGTA+AGG - chr1_3:52774287-52774306 None:intergenic 35.0%
!!! TTTTGGTTTGGGTTGATTGT+TGG - chr1_3:52774330-52774349 None:intergenic 35.0%
! GGAAAAAAGGTTTTCTAGGT+TGG - chr1_3:52774431-52774450 None:intergenic 35.0%
! TGGAGGAAAAAAGGTTTTCT+AGG - chr1_3:52774435-52774454 None:intergenic 35.0%
!!! ATGGTTGTTTTGGTTTTTGG+AGG - chr1_3:52774452-52774471 None:intergenic 35.0%
ATGGAGAGAGAATCAAAACA+TGG - chr1_3:52774471-52774490 None:intergenic 35.0%
!!! AGAAGAAAGAGGGGTTTTTT+TGG - chr1_3:52774520-52774539 None:intergenic 35.0%
TTCTCCTGATTACACAACTT+TGG + chr1_3:52774585-52774604 Msa0124910:CDS 35.0%
TAGACCAAAGTTGTGTAATC+AGG - chr1_3:52774592-52774611 None:intergenic 35.0%
TACACAACTTTGGTCTACAA+AGG + chr1_3:52774595-52774614 Msa0124910:CDS 35.0%
GAAACATTCACAGATCCAAA+TGG + chr1_3:52774628-52774647 Msa0124910:CDS 35.0%
GATTGTGAATATGCACCATT+TGG - chr1_3:52774646-52774665 None:intergenic 35.0%
! CAATCTCTTTCAGCACTTTT+TGG + chr1_3:52774661-52774680 Msa0124910:CDS 35.0%
AGGTTCTTCAAAACAACAAC+TGG + chr1_3:52774712-52774731 Msa0124910:CDS 35.0%
!! GCTTTTTCTGTGATGGAAAA+TGG + chr1_3:52774997-52775016 Msa0124910:CDS 35.0%
!! AATGGTGTTGTGAGTAATCA+TGG + chr1_3:52775015-52775034 Msa0124910:CDS 35.0%
GAATGTGGAAGTTCTATTTC+AGG + chr1_3:52775150-52775169 Msa0124910:CDS 35.0%
! TCTGGTTACTCTTCATCTTT+TGG + chr1_3:52775270-52775289 Msa0124910:CDS 35.0%
CTCAATTTAGCAATGGCAAT+TGG + chr1_3:52775616-52775635 Msa0124910:intron 35.0%
! ATTAATCATTGACTGGTGTG+TGG + chr1_3:52775728-52775747 Msa0124910:intron 35.0%
TGGCTAAATGATGTTATGAC+AGG + chr1_3:52775748-52775767 Msa0124910:intron 35.0%
GTTATGACAGGACAAAATAC+AGG + chr1_3:52775760-52775779 Msa0124910:intron 35.0%
ACAAAATACAGGAAAGACTG+TGG + chr1_3:52775771-52775790 Msa0124910:CDS 35.0%
ACTGTGGCAATAATATTAGG+AGG + chr1_3:52775787-52775806 Msa0124910:CDS 35.0%
TAGAAGAAGATGGTTTACTG+TGG + chr1_3:52776016-52776035 Msa0124910:CDS 35.0%
AATCCACCTCAAGAAGAATT+TGG - chr1_3:52776045-52776064 None:intergenic 35.0%
!! TTTTGGCTGAAAGAGATTTG+TGG + chr1_3:52776082-52776101 Msa0124910:three_prime_UTR 35.0%
! AATCTAGGACTGTTGAATGT+GGG + chr1_3:52776131-52776150 Msa0124910:three_prime_UTR 35.0%
TGGTATCATTACAAGGGAAA+AGG + chr1_3:52776240-52776259 Msa0124910:three_prime_UTR 35.0%
GTATTGGGATTCACTTTCTT+TGG - chr1_3:52774215-52774234 None:intergenic 35.0%
!!! TCTTCTGGTTTTGGTGTATT+GGG - chr1_3:52774230-52774249 None:intergenic 35.0%
!!! TTCTTCTGGTTTTGGTGTAT+TGG - chr1_3:52774231-52774250 None:intergenic 35.0%
AGAATATGGGAGTAAGGAAA+AGG - chr1_3:52774281-52774300 None:intergenic 35.0%
! TTTTGCAGAATATGGGAGTA+AGG - chr1_3:52774287-52774306 None:intergenic 35.0%
!!! TTTTGGTTTGGGTTGATTGT+TGG - chr1_3:52774330-52774349 None:intergenic 35.0%
! GGAAAAAAGGTTTTCTAGGT+TGG - chr1_3:52774431-52774450 None:intergenic 35.0%
! TGGAGGAAAAAAGGTTTTCT+AGG - chr1_3:52774435-52774454 None:intergenic 35.0%
!!! ATGGTTGTTTTGGTTTTTGG+AGG - chr1_3:52774452-52774471 None:intergenic 35.0%
ATGGAGAGAGAATCAAAACA+TGG - chr1_3:52774471-52774490 None:intergenic 35.0%
!!! AGAAGAAAGAGGGGTTTTTT+TGG - chr1_3:52774520-52774539 None:intergenic 35.0%
TTCTCCTGATTACACAACTT+TGG + chr1_3:52774585-52774604 Msa0124910:CDS 35.0%
TAGACCAAAGTTGTGTAATC+AGG - chr1_3:52774592-52774611 None:intergenic 35.0%
TACACAACTTTGGTCTACAA+AGG + chr1_3:52774595-52774614 Msa0124910:CDS 35.0%
GAAACATTCACAGATCCAAA+TGG + chr1_3:52774628-52774647 Msa0124910:CDS 35.0%
GATTGTGAATATGCACCATT+TGG - chr1_3:52774646-52774665 None:intergenic 35.0%
! CAATCTCTTTCAGCACTTTT+TGG + chr1_3:52774661-52774680 Msa0124910:CDS 35.0%
AGGTTCTTCAAAACAACAAC+TGG + chr1_3:52774712-52774731 Msa0124910:CDS 35.0%
!! GCTTTTTCTGTGATGGAAAA+TGG + chr1_3:52774997-52775016 Msa0124910:CDS 35.0%
!! AATGGTGTTGTGAGTAATCA+TGG + chr1_3:52775015-52775034 Msa0124910:CDS 35.0%
GAATGTGGAAGTTCTATTTC+AGG + chr1_3:52775150-52775169 Msa0124910:CDS 35.0%
! TCTGGTTACTCTTCATCTTT+TGG + chr1_3:52775270-52775289 Msa0124910:CDS 35.0%
CTCAATTTAGCAATGGCAAT+TGG + chr1_3:52775616-52775635 Msa0124910:intron 35.0%
! ATTAATCATTGACTGGTGTG+TGG + chr1_3:52775728-52775747 Msa0124910:intron 35.0%
TGGCTAAATGATGTTATGAC+AGG + chr1_3:52775748-52775767 Msa0124910:intron 35.0%
GTTATGACAGGACAAAATAC+AGG + chr1_3:52775760-52775779 Msa0124910:intron 35.0%
ACAAAATACAGGAAAGACTG+TGG + chr1_3:52775771-52775790 Msa0124910:CDS 35.0%
ACTGTGGCAATAATATTAGG+AGG + chr1_3:52775787-52775806 Msa0124910:CDS 35.0%
TAGAAGAAGATGGTTTACTG+TGG + chr1_3:52776016-52776035 Msa0124910:CDS 35.0%
AATCCACCTCAAGAAGAATT+TGG - chr1_3:52776045-52776064 None:intergenic 35.0%
!! TTTTGGCTGAAAGAGATTTG+TGG + chr1_3:52776082-52776101 Msa0124910:three_prime_UTR 35.0%
! AATCTAGGACTGTTGAATGT+GGG + chr1_3:52776131-52776150 Msa0124910:three_prime_UTR 35.0%
TGGTATCATTACAAGGGAAA+AGG + chr1_3:52776240-52776259 Msa0124910:three_prime_UTR 35.0%
GGGAGTAAGGAAAAGGATTT+GGG - chr1_3:52774274-52774293 None:intergenic 40.0%
TGGGAGTAAGGAAAAGGATT+TGG - chr1_3:52774275-52774294 None:intergenic 40.0%
TTGTGTTGAGATTCAGAGAG+GGG - chr1_3:52774391-52774410 None:intergenic 40.0%
CTTGTGTTGAGATTCAGAGA+GGG - chr1_3:52774392-52774411 None:intergenic 40.0%
!! AGATACCTGTGATGCTGTTT+TGG - chr1_3:52774744-52774763 None:intergenic 40.0%
! CATAGTTTGTCTGAGAGAAC+TGG - chr1_3:52774823-52774842 None:intergenic 40.0%
GTTCTCTCAGACAAACTATG+TGG + chr1_3:52774823-52774842 Msa0124910:CDS 40.0%
!! CTGGTTTTCCACAAGTTTCA+GGG + chr1_3:52774902-52774921 Msa0124910:CDS 40.0%
CAGATTCTCTTCAAGACTTG+TGG + chr1_3:52774928-52774947 Msa0124910:CDS 40.0%
!!! AGACACTGCTTTTTCTGTGA+TGG + chr1_3:52774990-52775009 Msa0124910:CDS 40.0%
!! GATGTTGGTGATTCTGATTG+TGG + chr1_3:52775090-52775109 Msa0124910:CDS 40.0%
!! CAAAGAGCTCAAGTTGAATG+TGG + chr1_3:52775135-52775154 Msa0124910:CDS 40.0%
TTATCCTAATGGGGTTCCAA+AGG + chr1_3:52775212-52775231 Msa0124910:CDS 40.0%
TATCCTAATGGGGTTCCAAA+GGG + chr1_3:52775213-52775232 Msa0124910:CDS 40.0%
! GGTTACTCTTCATCTTTTGG+TGG + chr1_3:52775273-52775292 Msa0124910:CDS 40.0%
!! GTCAACTTGTTGTGTTGTGT+AGG + chr1_3:52775502-52775521 Msa0124910:intron 40.0%
! ACCTTCAATCTGAAGTGTCA+AGG + chr1_3:52775565-52775584 Msa0124910:intron 40.0%
ACCTTGACACTTCAGATTGA+AGG - chr1_3:52775569-52775588 None:intergenic 40.0%
GAAGGAGCTCAATTTAGCAA+TGG + chr1_3:52775609-52775628 Msa0124910:intron 40.0%
TGATGAAGAAACGTGATGGT+AGG + chr1_3:52775860-52775879 Msa0124910:CDS 40.0%
AAGAAGATGGTTTACTGTGG+AGG + chr1_3:52776019-52776038 Msa0124910:CDS 40.0%
GGGAGATAGAGAAAGAATCT+AGG + chr1_3:52776116-52776135 Msa0124910:three_prime_UTR 40.0%
! GAATCTAGGACTGTTGAATG+TGG + chr1_3:52776130-52776149 Msa0124910:three_prime_UTR 40.0%
! ATCTAGGACTGTTGAATGTG+GGG + chr1_3:52776132-52776151 Msa0124910:three_prime_UTR 40.0%
TTCACTTTCTTTGGGTGCAA+GGG - chr1_3:52774206-52774225 None:intergenic 40.0%
ATTCACTTTCTTTGGGTGCA+AGG - chr1_3:52774207-52774226 None:intergenic 40.0%
GGGAGTAAGGAAAAGGATTT+GGG - chr1_3:52774274-52774293 None:intergenic 40.0%
TGGGAGTAAGGAAAAGGATT+TGG - chr1_3:52774275-52774294 None:intergenic 40.0%
TTGTGTTGAGATTCAGAGAG+GGG - chr1_3:52774391-52774410 None:intergenic 40.0%
CTTGTGTTGAGATTCAGAGA+GGG - chr1_3:52774392-52774411 None:intergenic 40.0%
!! AGATACCTGTGATGCTGTTT+TGG - chr1_3:52774744-52774763 None:intergenic 40.0%
! CATAGTTTGTCTGAGAGAAC+TGG - chr1_3:52774823-52774842 None:intergenic 40.0%
GTTCTCTCAGACAAACTATG+TGG + chr1_3:52774823-52774842 Msa0124910:CDS 40.0%
!! CTGGTTTTCCACAAGTTTCA+GGG + chr1_3:52774902-52774921 Msa0124910:CDS 40.0%
CAGATTCTCTTCAAGACTTG+TGG + chr1_3:52774928-52774947 Msa0124910:CDS 40.0%
!!! AGACACTGCTTTTTCTGTGA+TGG + chr1_3:52774990-52775009 Msa0124910:CDS 40.0%
!! GATGTTGGTGATTCTGATTG+TGG + chr1_3:52775090-52775109 Msa0124910:CDS 40.0%
!! CAAAGAGCTCAAGTTGAATG+TGG + chr1_3:52775135-52775154 Msa0124910:CDS 40.0%
TTATCCTAATGGGGTTCCAA+AGG + chr1_3:52775212-52775231 Msa0124910:CDS 40.0%
TATCCTAATGGGGTTCCAAA+GGG + chr1_3:52775213-52775232 Msa0124910:CDS 40.0%
! GGTTACTCTTCATCTTTTGG+TGG + chr1_3:52775273-52775292 Msa0124910:CDS 40.0%
!! GTCAACTTGTTGTGTTGTGT+AGG + chr1_3:52775502-52775521 Msa0124910:intron 40.0%
! ACCTTCAATCTGAAGTGTCA+AGG + chr1_3:52775565-52775584 Msa0124910:intron 40.0%
ACCTTGACACTTCAGATTGA+AGG - chr1_3:52775569-52775588 None:intergenic 40.0%
GAAGGAGCTCAATTTAGCAA+TGG + chr1_3:52775609-52775628 Msa0124910:intron 40.0%
TGATGAAGAAACGTGATGGT+AGG + chr1_3:52775860-52775879 Msa0124910:CDS 40.0%
AAGAAGATGGTTTACTGTGG+AGG + chr1_3:52776019-52776038 Msa0124910:CDS 40.0%
GGGAGATAGAGAAAGAATCT+AGG + chr1_3:52776116-52776135 Msa0124910:three_prime_UTR 40.0%
! GAATCTAGGACTGTTGAATG+TGG + chr1_3:52776130-52776149 Msa0124910:three_prime_UTR 40.0%
! ATCTAGGACTGTTGAATGTG+GGG + chr1_3:52776132-52776151 Msa0124910:three_prime_UTR 40.0%
!!! GCTCTCTCTTCTTCTGGTTT+TGG - chr1_3:52774239-52774258 None:intergenic 45.0%
TGCATTGCTCTCTCTTCTTC+TGG - chr1_3:52774245-52774264 None:intergenic 45.0%
TGTGTTGAGATTCAGAGAGG+GGG - chr1_3:52774390-52774409 None:intergenic 45.0%
GCTTGTGTTGAGATTCAGAG+AGG - chr1_3:52774393-52774412 None:intergenic 45.0%
AATGGCCAAAACAGCATCAC+AGG + chr1_3:52774736-52774755 Msa0124910:CDS 45.0%
ACAGGTATCTTCCAATGCAG+AGG + chr1_3:52774754-52774773 Msa0124910:CDS 45.0%
TTGTGAGATCTCCTCTGCAT+TGG - chr1_3:52774768-52774787 None:intergenic 45.0%
AAGCTGAACTCTTGCAGAGA+TGG - chr1_3:52774854-52774873 None:intergenic 45.0%
TCTGCAAGAGTTCAGCTTTC+AGG + chr1_3:52774856-52774875 Msa0124910:CDS 45.0%
AGGTTGTTACATGCTGTACG+AGG + chr1_3:52774876-52774895 Msa0124910:CDS 45.0%
!!! GCTGGTTTTCCACAAGTTTC+AGG + chr1_3:52774901-52774920 Msa0124910:CDS 45.0%
ATCTGCATCCCTGAAACTTG+TGG - chr1_3:52774913-52774932 None:intergenic 45.0%
TGTGGAACAACAAATGCTGC+TGG + chr1_3:52774946-52774965 Msa0124910:CDS 45.0%
ACAACAAATGCTGCTGGAAG+AGG + chr1_3:52774952-52774971 Msa0124910:CDS 45.0%
CAACAAATGCTGCTGGAAGA+GGG + chr1_3:52774953-52774972 Msa0124910:CDS 45.0%
!! TATGTGATGGGTCAGTGTGA+GGG + chr1_3:52775066-52775085 Msa0124910:CDS 45.0%
GATGAAGAATGACCACCCTT+TGG - chr1_3:52775231-52775250 None:intergenic 45.0%
AAGGGTGGTCATTCTTCATC+TGG + chr1_3:52775231-52775250 Msa0124910:CDS 45.0%
! CAAGTTGACACTGATGCATG+TGG - chr1_3:52775491-52775510 None:intergenic 45.0%
TGTCTGACACCAACACATGT+CGG + chr1_3:52775525-52775544 Msa0124910:intron 45.0%
TGTATGTGTCCGACATGTGT+TGG - chr1_3:52775537-52775556 None:intergenic 45.0%
ACACATGTCGGACACATACA+CGG + chr1_3:52775537-52775556 Msa0124910:intron 45.0%
! ATTAGGAGGTATAGCTGCTG+TGG + chr1_3:52775801-52775820 Msa0124910:CDS 45.0%
! TATAGCTGCTGTGGCGTTTT+TGG + chr1_3:52775810-52775829 Msa0124910:CDS 45.0%
! GGTAGGTGTTGTGTTGTACA+TGG + chr1_3:52775877-52775896 Msa0124910:intron 45.0%
TGGAGGCCAAATTCTTCTTG+AGG + chr1_3:52776036-52776055 Msa0124910:CDS 45.0%
AGGCCAAATTCTTCTTGAGG+TGG + chr1_3:52776039-52776058 Msa0124910:exon 45.0%
!!! GCTCTCTCTTCTTCTGGTTT+TGG - chr1_3:52774239-52774258 None:intergenic 45.0%
TGCATTGCTCTCTCTTCTTC+TGG - chr1_3:52774245-52774264 None:intergenic 45.0%
TGTGTTGAGATTCAGAGAGG+GGG - chr1_3:52774390-52774409 None:intergenic 45.0%
GCTTGTGTTGAGATTCAGAG+AGG - chr1_3:52774393-52774412 None:intergenic 45.0%
AATGGCCAAAACAGCATCAC+AGG + chr1_3:52774736-52774755 Msa0124910:CDS 45.0%
ACAGGTATCTTCCAATGCAG+AGG + chr1_3:52774754-52774773 Msa0124910:CDS 45.0%
TTGTGAGATCTCCTCTGCAT+TGG - chr1_3:52774768-52774787 None:intergenic 45.0%
AAGCTGAACTCTTGCAGAGA+TGG - chr1_3:52774854-52774873 None:intergenic 45.0%
TCTGCAAGAGTTCAGCTTTC+AGG + chr1_3:52774856-52774875 Msa0124910:CDS 45.0%
AGGTTGTTACATGCTGTACG+AGG + chr1_3:52774876-52774895 Msa0124910:CDS 45.0%
!!! GCTGGTTTTCCACAAGTTTC+AGG + chr1_3:52774901-52774920 Msa0124910:CDS 45.0%
ATCTGCATCCCTGAAACTTG+TGG - chr1_3:52774913-52774932 None:intergenic 45.0%
TGTGGAACAACAAATGCTGC+TGG + chr1_3:52774946-52774965 Msa0124910:CDS 45.0%
ACAACAAATGCTGCTGGAAG+AGG + chr1_3:52774952-52774971 Msa0124910:CDS 45.0%
CAACAAATGCTGCTGGAAGA+GGG + chr1_3:52774953-52774972 Msa0124910:CDS 45.0%
!! TATGTGATGGGTCAGTGTGA+GGG + chr1_3:52775066-52775085 Msa0124910:CDS 45.0%
GATGAAGAATGACCACCCTT+TGG - chr1_3:52775231-52775250 None:intergenic 45.0%
AAGGGTGGTCATTCTTCATC+TGG + chr1_3:52775231-52775250 Msa0124910:CDS 45.0%
! CAAGTTGACACTGATGCATG+TGG - chr1_3:52775491-52775510 None:intergenic 45.0%
TGTCTGACACCAACACATGT+CGG + chr1_3:52775525-52775544 Msa0124910:intron 45.0%
TGTATGTGTCCGACATGTGT+TGG - chr1_3:52775537-52775556 None:intergenic 45.0%
ACACATGTCGGACACATACA+CGG + chr1_3:52775537-52775556 Msa0124910:intron 45.0%
! ATTAGGAGGTATAGCTGCTG+TGG + chr1_3:52775801-52775820 Msa0124910:CDS 45.0%
! TATAGCTGCTGTGGCGTTTT+TGG + chr1_3:52775810-52775829 Msa0124910:CDS 45.0%
! GGTAGGTGTTGTGTTGTACA+TGG + chr1_3:52775877-52775896 Msa0124910:intron 45.0%
TGGAGGCCAAATTCTTCTTG+AGG + chr1_3:52776036-52776055 Msa0124910:CDS 45.0%
AGGCCAAATTCTTCTTGAGG+TGG + chr1_3:52776039-52776058 Msa0124910:exon 45.0%
TGTTGAGATTCAGAGAGGGG+GGG - chr1_3:52774388-52774407 None:intergenic 50.0%
GTGTTGAGATTCAGAGAGGG+GGG - chr1_3:52774389-52774408 None:intergenic 50.0%
TACATGCTGTACGAGGTTGC+TGG + chr1_3:52774883-52774902 Msa0124910:CDS 50.0%
!! GTATGTGATGGGTCAGTGTG+AGG + chr1_3:52775065-52775084 Msa0124910:CDS 50.0%
GGTGGTCATTCTTCATCTGG+TGG + chr1_3:52775234-52775253 Msa0124910:CDS 50.0%
GGTCATTCTTCATCTGGTGG+TGG + chr1_3:52775237-52775256 Msa0124910:CDS 50.0%
!! GGTGGTGGATCATCTTCTTC+TGG + chr1_3:52775252-52775271 Msa0124910:CDS 50.0%
TGTTGAGATTCAGAGAGGGG+GGG - chr1_3:52774388-52774407 None:intergenic 50.0%
GTGTTGAGATTCAGAGAGGG+GGG - chr1_3:52774389-52774408 None:intergenic 50.0%
TACATGCTGTACGAGGTTGC+TGG + chr1_3:52774883-52774902 Msa0124910:CDS 50.0%
!! GTATGTGATGGGTCAGTGTG+AGG + chr1_3:52775065-52775084 Msa0124910:CDS 50.0%
GGTGGTCATTCTTCATCTGG+TGG + chr1_3:52775234-52775253 Msa0124910:CDS 50.0%
GGTCATTCTTCATCTGGTGG+TGG + chr1_3:52775237-52775256 Msa0124910:CDS 50.0%
!! GGTGGTGGATCATCTTCTTC+TGG + chr1_3:52775252-52775271 Msa0124910:CDS 50.0%
TTGAGATTCAGAGAGGGGGG+GGG - chr1_3:52774386-52774405 None:intergenic 55.0%
GTTGAGATTCAGAGAGGGGG+GGG - chr1_3:52774387-52774406 None:intergenic 55.0%
GGTCAGTGTGAGGGTGATGT+TGG + chr1_3:52775075-52775094 Msa0124910:CDS 55.0%
!! CCACCCTTTGGAACCCCATT+AGG - chr1_3:52775219-52775238 None:intergenic 55.0%
CCTAATGGGGTTCCAAAGGG+TGG + chr1_3:52775216-52775235 Msa0124910:CDS 55.0%
TTGAGATTCAGAGAGGGGGG+GGG - chr1_3:52774386-52774405 None:intergenic 55.0%
GTTGAGATTCAGAGAGGGGG+GGG - chr1_3:52774387-52774406 None:intergenic 55.0%
GGTCAGTGTGAGGGTGATGT+TGG + chr1_3:52775075-52775094 Msa0124910:CDS 55.0%
!! CCACCCTTTGGAACCCCATT+AGG - chr1_3:52775219-52775238 None:intergenic 55.0%
CCTAATGGGGTTCCAAAGGG+TGG + chr1_3:52775216-52775235 Msa0124910:CDS 55.0%
AGAGGGGGGGGGACAGGTTA+AGG - chr1_3:52774375-52774394 None:intergenic 65.0%
ATTCAGAGAGGGGGGGGGAC+AGG - chr1_3:52774381-52774400 None:intergenic 65.0%
AGAGGGGGGGGGACAGGTTA+AGG - chr1_3:52774375-52774394 None:intergenic 65.0%
ATTCAGAGAGGGGGGGGGAC+AGG - chr1_3:52774381-52774400 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 52774205 52776309 52774205 ID=Msa0124910;Name=Msa0124910
chr1_3 mRNA 52774205 52776309 52774205 ID=Msa0124910-mRNA-1;Parent=Msa0124910;Name=Msa0124910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=303|0.5|0.66|1|1|1|3|253|316
chr1_3 exon 52774205 52775294 52774205 ID=Msa0124910-mRNA-1:exon:16209;Parent=Msa0124910-mRNA-1
chr1_3 exon 52775770 52775881 52775770 ID=Msa0124910-mRNA-1:exon:16210;Parent=Msa0124910-mRNA-1
chr1_3 exon 52776005 52776309 52776005 ID=Msa0124910-mRNA-1:exon:16211;Parent=Msa0124910-mRNA-1
chr1_3 five_prime_UTR 52774205 52774507 52774205 ID=Msa0124910-mRNA-1:five_prime_utr;Parent=Msa0124910-mRNA-1
chr1_3 CDS 52774508 52775294 52774508 ID=Msa0124910-mRNA-1:cds;Parent=Msa0124910-mRNA-1
chr1_3 CDS 52775770 52775881 52775770 ID=Msa0124910-mRNA-1:cds;Parent=Msa0124910-mRNA-1
chr1_3 CDS 52776005 52776056 52776005 ID=Msa0124910-mRNA-1:cds;Parent=Msa0124910-mRNA-1
chr1_3 three_prime_UTR 52776057 52776309 52776057 ID=Msa0124910-mRNA-1:three_prime_utr;Parent=Msa0124910-mRNA-1
Gene Sequence

>Msa0124910

ATGGGTTTTCCAAAAAAACCCCTCTTTCTTCTTTTGTTCTTCATTTTCTTCACAACCCATTTCTCTAAATCATCATCTTCTCCTGATTACACAACTTTGGTCTACAAAGGTTGTTCAAAAGAAACATTCACAGATCCAAATGGTGCATATTCACAATCTCTTTCAGCACTTTTTGGTTCCTTAGTTTCACAATCCACAAAAACAAGGTTCTTCAAAACAACAACTGGTAATGGCCAAAACAGCATCACAGGTATCTTCCAATGCAGAGGAGATCTCACAAACTCAGATTGCTACAGCTGTGTTAGCAAGCTTCCAGTTCTCTCAGACAAACTATGTGGCAAAACCATCTCTGCAAGAGTTCAGCTTTCAGGTTGTTACATGCTGTACGAGGTTGCTGGTTTTCCACAAGTTTCAGGGATGCAGATTCTCTTCAAGACTTGTGGAACAACAAATGCTGCTGGAAGAGGGTTTGAAGAGAGAAGAGACACTGCTTTTTCTGTGATGGAAAATGGTGTTGTGAGTAATCATGGTTTTTATGTTACTACTTATCAAGCTTTGTATGTGATGGGTCAGTGTGAGGGTGATGTTGGTGATTCTGATTGTGGTGAGTGTGTTAAATCTGCTGTTCAAAGAGCTCAAGTTGAATGTGGAAGTTCTATTTCAGGACAAATTTATTTGCATAAGTGCTTTATTAGTTTTAGTTATTATCCTAATGGGGTTCCAAAGGGTGGTCATTCTTCATCTGGTGGTGGATCATCTTCTTCTGGTTACTCTTCATCTTTTGGTGGACAAAATACAGGAAAGACTGTGGCAATAATATTAGGAGGTATAGCTGCTGTGGCGTTTTTGGTTATATGCTTGCTATTTGCAAGGAATTTGATGAAGAAACGTGATGGTAGATTATTGACTGTAGAAGAAGATGGTTTACTGTGGAGGCCAAATTCTTCTTGA

Protein sequence

>Msa0124910

MGFPKKPLFLLLFFIFFTTHFSKSSSSPDYTTLVYKGCSKETFTDPNGAYSQSLSALFGSLVSQSTKTRFFKTTTGNGQNSITGIFQCRGDLTNSDCYSCVSKLPVLSDKLCGKTISARVQLSGCYMLYEVAGFPQVSGMQILFKTCGTTNAAGRGFEERRDTAFSVMENGVVSNHGFYVTTYQALYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQIYLHKCFISFSYYPNGVPKGGHSSSGGGSSSSGYSSSFGGQNTGKTVAIILGGIAAVAFLVICLLFARNLMKKRDGRLLTVEEDGLLWRPNSS*