Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0124910 | AES60997.1 | 98.418 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 0.0 | 632 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0124910 | sp|Q6NM73|PDLP2_ARATH | 67.230 | 296 | 89 | 2 | 8 | 297 | 10 | 303 | 1.25e-134 | 387 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0124910 | G7I3U3 | 98.418 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 0.0 | 632 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002420 | Msa0124910 | 0.821388 | 4.145423e-53 | -8.615850e-47 |
Msa0028440 | Msa0124910 | 0.808038 | 3.768362e-50 | -8.615850e-47 |
Msa0029380 | Msa0124910 | 0.904199 | 1.575223e-79 | -8.615850e-47 |
Msa0040790 | Msa0124910 | 0.865782 | 4.598461e-65 | -8.615850e-47 |
Msa0044160 | Msa0124910 | 0.837819 | 4.149656e-57 | -8.615850e-47 |
Msa0065020 | Msa0124910 | 0.802085 | 6.630772e-49 | -8.615850e-47 |
Msa0077340 | Msa0124910 | 0.856736 | 2.629366e-62 | -8.615850e-47 |
Msa0077560 | Msa0124910 | 0.852655 | 4.002487e-61 | -8.615850e-47 |
Msa0124910 | Msa0125360 | 0.836143 | 1.112019e-56 | -8.615850e-47 |
Msa0124910 | Msa0127770 | 0.819154 | 1.348053e-52 | -8.615850e-47 |
Msa0124910 | Msa0139500 | 0.823571 | 1.289312e-53 | -8.615850e-47 |
Msa0124910 | Msa0142430 | 0.872162 | 3.931550e-67 | -8.615850e-47 |
Msa0124910 | Msa0143590 | 0.801703 | 7.946490e-49 | -8.615850e-47 |
Msa0124910 | Msa0169410 | 0.906759 | 1.052810e-80 | -8.615850e-47 |
Msa0124910 | Msa0177320 | 0.802839 | 4.636434e-49 | -8.615850e-47 |
Msa0124910 | Msa0183710 | 0.865235 | 6.840895e-65 | -8.615850e-47 |
Msa0124910 | Msa0184500 | 0.829474 | 5.043665e-55 | -8.615850e-47 |
Msa0124910 | Msa0185290 | 0.801466 | 8.887678e-49 | -8.615850e-47 |
Msa0124910 | Msa0190730 | 0.817839 | 2.677742e-52 | -8.615850e-47 |
Msa0124910 | Msa0195230 | 0.808638 | 2.806882e-50 | -8.615850e-47 |
Msa0124910 | Msa0204950 | 0.849470 | 3.167329e-60 | -8.615850e-47 |
Msa0124910 | Msa0209140 | 0.826255 | 2.999594e-54 | -8.615850e-47 |
Msa0124910 | Msa0231630 | 0.814129 | 1.802907e-51 | -8.615850e-47 |
Msa0124910 | Msa0249850 | 0.858991 | 5.631463e-63 | -8.615850e-47 |
Msa0124910 | Msa0263780 | 0.824520 | 7.721229e-54 | -8.615850e-47 |
Msa0124910 | Msa0269210 | 0.849423 | 3.264790e-60 | -8.615850e-47 |
Msa0124910 | Msa0276860 | 0.821896 | 3.163888e-53 | -8.615850e-47 |
Msa0124910 | Msa0281470 | 0.848612 | 5.484221e-60 | -8.615850e-47 |
Msa0124910 | Msa0288620 | 0.841125 | 5.744259e-58 | -8.615850e-47 |
Msa0124910 | Msa0307270 | 0.843954 | 1.019925e-58 | -8.615850e-47 |
Msa0124910 | Msa0313900 | 0.808843 | 2.537823e-50 | -8.615850e-47 |
Msa0124910 | Msa0320600 | 0.857002 | 2.195277e-62 | -8.615850e-47 |
Msa0124910 | Msa0326710 | 0.839981 | 1.144135e-57 | -8.615850e-47 |
Msa0124910 | Msa0330520 | 0.801350 | 9.386082e-49 | -8.615850e-47 |
Msa0124910 | Msa0339020 | 0.829266 | 5.666833e-55 | -8.615850e-47 |
Msa0124910 | Msa0354840 | 0.808449 | 3.080978e-50 | -8.615850e-47 |
Msa0124910 | Msa0361910 | 0.836701 | 8.018439e-57 | -8.615850e-47 |
Msa0124910 | Msa0375640 | 0.820280 | 7.456478e-53 | -8.615850e-47 |
Msa0124910 | Msa0377710 | 0.821222 | 4.527618e-53 | -8.615850e-47 |
Msa0124910 | Msa0380490 | 0.824483 | 7.876097e-54 | -8.615850e-47 |
Msa0124910 | Msa0385310 | 0.802486 | 5.483977e-49 | -8.615850e-47 |
Msa0124910 | Msa0386880 | 0.802850 | 4.612798e-49 | -8.615850e-47 |
Msa0124910 | Msa0389690 | 0.823773 | 1.156320e-53 | -8.615850e-47 |
Msa0124910 | Msa0409830 | 0.835350 | 1.766578e-56 | -8.615850e-47 |
Msa0124910 | Msa0412790 | 0.817260 | 3.615799e-52 | -8.615850e-47 |
Msa0124910 | Msa0414880 | 0.838153 | 3.405834e-57 | -8.615850e-47 |
Msa0124910 | Msa0416020 | 0.816280 | 5.998022e-52 | -8.615850e-47 |
Msa0124910 | Msa0417970 | 0.810190 | 1.303507e-50 | -8.615850e-47 |
Msa0124910 | Msa0424160 | 0.828593 | 8.249806e-55 | -8.615850e-47 |
Msa0124910 | Msa0430230 | 0.825378 | 4.842952e-54 | -8.615850e-47 |
Msa0124910 | Msa0436330 | 0.813533 | 2.439612e-51 | -8.615850e-47 |
Msa0124910 | Msa0437520 | 0.839682 | 1.369291e-57 | -8.615850e-47 |
Msa0124910 | Msa0440350 | 0.830838 | 2.343480e-55 | -8.615850e-47 |
Msa0124910 | Msa0454560 | 0.813124 | 2.999536e-51 | -8.615850e-47 |
Msa0124910 | Msa0459740 | 0.809588 | 1.756761e-50 | -8.615850e-47 |
Msa0124910 | Msa0479420 | 0.816427 | 5.561532e-52 | -8.615850e-47 |
Msa0124910 | Msa0481890 | 0.828418 | 9.088208e-55 | -8.615850e-47 |
Msa0124910 | Msa0490430 | 0.802249 | 6.134720e-49 | -8.615850e-47 |
Msa0124910 | Msa0495300 | 0.821913 | 3.135436e-53 | -8.615850e-47 |
Msa0124910 | Msa0500650 | 0.844176 | 8.888552e-59 | -8.615850e-47 |
Msa0124910 | Msa0502510 | 0.841743 | 3.949122e-58 | -8.615850e-47 |
Msa0124910 | Msa0508180 | 0.831663 | 1.469479e-55 | -8.615850e-47 |
Msa0124910 | Msa0515520 | 0.809121 | 2.212744e-50 | -8.615850e-47 |
Msa0124910 | Msa0515800 | 0.822235 | 2.639632e-53 | -8.615850e-47 |
Msa0124910 | Msa0519760 | 0.845781 | 3.278642e-59 | -8.615850e-47 |
Msa0124910 | Msa0519810 | 0.836326 | 9.993458e-57 | -8.615850e-47 |
Msa0124910 | Msa0519840 | 0.843941 | 1.027795e-58 | -8.615850e-47 |
Msa0124910 | Msa0523110 | 0.818192 | 2.228336e-52 | -8.615850e-47 |
Msa0124910 | Msa0525880 | 0.818120 | 2.313576e-52 | -8.615850e-47 |
Msa0124910 | Msa0529030 | 0.818312 | 2.092801e-52 | -8.615850e-47 |
Msa0124910 | Msa0532190 | 0.805469 | 1.315313e-49 | -8.615850e-47 |
Msa0124910 | Msa0545920 | 0.803315 | 3.697135e-49 | -8.615850e-47 |
Msa0124910 | Msa0567610 | 0.834032 | 3.788361e-56 | -8.615850e-47 |
Msa0124910 | Msa0574900 | 0.844033 | 9.712554e-59 | -8.615850e-47 |
Msa0124910 | Msa0579160 | 0.800383 | 1.478691e-48 | -8.615850e-47 |
Msa0124910 | Msa0579220 | 0.805108 | 1.564988e-49 | -8.615850e-47 |
Msa0124910 | Msa0601720 | 0.807190 | 5.704852e-50 | -8.615850e-47 |
Msa0124910 | Msa0607800 | 0.816703 | 4.823063e-52 | -8.615850e-47 |
Msa0124910 | Msa0608700 | 0.835183 | 1.946062e-56 | -8.615850e-47 |
Msa0124910 | Msa0610700 | -0.814740 | 1.321077e-51 | -8.615850e-47 |
Msa0124910 | Msa0617940 | 0.809940 | 1.475855e-50 | -8.615850e-47 |
Msa0124910 | Msa0624900 | 0.811576 | 6.532425e-51 | -8.615850e-47 |
Msa0124910 | Msa0630440 | 0.817466 | 3.249567e-52 | -8.615850e-47 |
Msa0124910 | Msa0641990 | 0.835433 | 1.682979e-56 | -8.615850e-47 |
Msa0124910 | Msa0648040 | 0.814400 | 1.570407e-51 | -8.615850e-47 |
Msa0124910 | Msa0649200 | 0.832075 | 1.162426e-55 | -8.615850e-47 |
Msa0124910 | Msa0652770 | 0.835808 | 1.352531e-56 | -8.615850e-47 |
Msa0124910 | Msa0657110 | -0.805220 | 1.482821e-49 | -8.615850e-47 |
Msa0124910 | Msa0662820 | 0.830306 | 3.163723e-55 | -8.615850e-47 |
Msa0124910 | Msa0681050 | 0.809655 | 1.699680e-50 | -8.615850e-47 |
Msa0124910 | Msa0683840 | 0.817762 | 2.786890e-52 | -8.615850e-47 |
Msa0124910 | Msa0690740 | 0.805564 | 1.255863e-49 | -8.615850e-47 |
Msa0124910 | Msa0692790 | 0.833311 | 5.736792e-56 | -8.615850e-47 |
Msa0124910 | Msa0693340 | -0.808879 | 2.493550e-50 | -8.615850e-47 |
Msa0124910 | Msa0703950 | 0.880554 | 4.990383e-70 | -8.615850e-47 |
Msa0124910 | Msa0705680 | 0.821159 | 4.683607e-53 | -8.615850e-47 |
Msa0124910 | Msa0707360 | 0.812060 | 5.125293e-51 | -8.615850e-47 |
Msa0124910 | Msa0709440 | 0.827327 | 1.663138e-54 | -8.615850e-47 |
Msa0124910 | Msa0716890 | 0.809167 | 2.163207e-50 | -8.615850e-47 |
Msa0124910 | Msa0719270 | 0.803290 | 3.740832e-49 | -8.615850e-47 |
Msa0124910 | Msa0733080 | 0.811514 | 6.740285e-51 | -8.615850e-47 |
Msa0124910 | Msa0734250 | 0.800076 | 1.707383e-48 | -8.615850e-47 |
Msa0124910 | Msa0735780 | 0.803744 | 3.012424e-49 | -8.615850e-47 |
Msa0124910 | Msa0745140 | 0.837107 | 6.316236e-57 | -8.615850e-47 |
Msa0124910 | Msa0746650 | 0.810254 | 1.263228e-50 | -8.615850e-47 |
Msa0124910 | Msa0754430 | 0.838647 | 2.540187e-57 | -8.615850e-47 |
Msa0124910 | Msa0754450 | 0.832057 | 1.174678e-55 | -8.615850e-47 |
Msa0124910 | Msa0756610 | 0.804483 | 2.114255e-49 | -8.615850e-47 |
Msa0124910 | Msa0776640 | 0.838179 | 3.352727e-57 | -8.615850e-47 |
Msa0124910 | Msa0780910 | 0.810481 | 1.128119e-50 | -8.615850e-47 |
Msa0124910 | Msa0795750 | 0.815924 | 7.205378e-52 | -8.615850e-47 |
Msa0124910 | Msa0810930 | 0.816319 | 5.878165e-52 | -8.615850e-47 |
Msa0124910 | Msa0813160 | 0.801211 | 1.002079e-48 | -8.615850e-47 |
Msa0124910 | Msa0815970 | 0.807044 | 6.124811e-50 | -8.615850e-47 |
Msa0124910 | Msa0825920 | 0.836086 | 1.149540e-56 | -8.615850e-47 |
Msa0124910 | Msa0835930 | 0.800313 | 1.527967e-48 | -8.615850e-47 |
Msa0124910 | Msa0850690 | 0.829133 | 6.104684e-55 | -8.615850e-47 |
Msa0124910 | Msa0851850 | 0.830297 | 3.178576e-55 | -8.615850e-47 |
Msa0124910 | Msa0865420 | 0.847869 | 8.799849e-60 | -8.615850e-47 |
Msa0124910 | Msa0865450 | 0.820733 | 5.868636e-53 | -8.615850e-47 |
Msa0124910 | Msa0878280 | 0.829744 | 4.336405e-55 | -8.615850e-47 |
Msa0124910 | Msa0902360 | 0.831040 | 2.090995e-55 | -8.615850e-47 |
Msa0124910 | Msa0930770 | 0.806997 | 6.267019e-50 | -8.615850e-47 |
Msa0124910 | Msa0944010 | 0.840037 | 1.106960e-57 | -8.615850e-47 |
Msa0124910 | Msa0945190 | 0.827870 | 1.231848e-54 | -8.615850e-47 |
Msa0124910 | Msa0980290 | 0.846465 | 2.135063e-59 | -8.615850e-47 |
Msa0124910 | Msa0982730 | 0.802859 | 4.593422e-49 | -8.615850e-47 |
Msa0124910 | Msa1002350 | 0.889799 | 1.751993e-73 | -8.615850e-47 |
Msa0124910 | Msa1044250 | 0.814827 | 1.263229e-51 | -8.615850e-47 |
Msa0124910 | Msa1045280 | 0.808139 | 3.586738e-50 | -8.615850e-47 |
Msa0124910 | Msa1072940 | 0.827997 | 1.148266e-54 | -8.615850e-47 |
Msa0124910 | Msa1074900 | 0.847865 | 8.822038e-60 | -8.615850e-47 |
Msa0124910 | Msa1078830 | 0.837176 | 6.065606e-57 | -8.615850e-47 |
Msa0124910 | Msa1078890 | 0.835604 | 1.522985e-56 | -8.615850e-47 |
Msa0124910 | Msa1081970 | 0.810169 | 1.317127e-50 | -8.615850e-47 |
Msa0124910 | Msa1082410 | 0.836888 | 7.186808e-57 | -8.615850e-47 |
Msa0124910 | Msa1082950 | 0.802657 | 5.057052e-49 | -8.615850e-47 |
Msa0124910 | Msa1083700 | 0.803306 | 3.712771e-49 | -8.615850e-47 |
Msa0124910 | Msa1084530 | 0.820852 | 5.509538e-53 | -8.615850e-47 |
Msa0124910 | Msa1104110 | 0.812478 | 4.155721e-51 | -8.615850e-47 |
Msa0124910 | Msa1106590 | 0.822358 | 2.472892e-53 | -8.615850e-47 |
Msa0124910 | Msa1115740 | 0.802674 | 5.016210e-49 | -8.615850e-47 |
Msa0124910 | Msa1119440 | 0.801071 | 1.070279e-48 | -8.615850e-47 |
Msa0124910 | Msa1125820 | 0.815251 | 1.017513e-51 | -8.615850e-47 |
Msa0124910 | Msa1125990 | 0.818089 | 2.351197e-52 | -8.615850e-47 |
Msa0124910 | Msa1145300 | 0.810573 | 1.077787e-50 | -8.615850e-47 |
Msa0124910 | Msa1147700 | 0.837793 | 4.214434e-57 | -8.615850e-47 |
Msa0124910 | Msa1158200 | 0.816030 | 6.823207e-52 | -8.615850e-47 |
Msa0124910 | Msa1160920 | 0.822932 | 1.817511e-53 | -8.615850e-47 |
Msa0124910 | Msa1162230 | 0.810339 | 1.211032e-50 | -8.615850e-47 |
Msa0124910 | Msa1165090 | 0.854777 | 9.815485e-62 | -8.615850e-47 |
Msa0124910 | Msa1169660 | 0.851740 | 7.289632e-61 | -8.615850e-47 |
Msa0124910 | Msa1171290 | 0.834036 | 3.779872e-56 | -8.615850e-47 |
Msa0124910 | Msa1207190 | 0.811820 | 5.783475e-51 | -8.615850e-47 |
Msa0124910 | Msa1207330 | 0.831191 | 1.919732e-55 | -8.615850e-47 |
Msa0124910 | Msa1213040 | 0.803333 | 3.664953e-49 | -8.615850e-47 |
Msa0124910 | Msa1216980 | 0.804616 | 1.982793e-49 | -8.615850e-47 |
Msa0124910 | Msa1218820 | 0.800068 | 1.713907e-48 | -8.615850e-47 |
Msa0124910 | Msa1257440 | 0.820702 | 5.963993e-53 | -8.615850e-47 |
Msa0124910 | Msa1257570 | 0.835927 | 1.261879e-56 | -8.615850e-47 |
Msa0124910 | Msa1259160 | 0.800354 | 1.499448e-48 | -8.615850e-47 |
Msa0124910 | Msa1262590 | 0.806298 | 8.805507e-50 | -8.615850e-47 |
Msa0124910 | Msa1268240 | 0.806300 | 8.797436e-50 | -8.615850e-47 |
Msa0124910 | Msa1299650 | 0.803846 | 2.868074e-49 | -8.615850e-47 |
Msa0124910 | Msa1305250 | 0.824122 | 9.577047e-54 | -8.615850e-47 |
Msa0124910 | Msa1327870 | 0.802078 | 6.655349e-49 | -8.615850e-47 |
Msa0124910 | Msa1331300 | 0.823951 | 1.050238e-53 | -8.615850e-47 |
Msa0124910 | Msa1347390 | 0.807149 | 5.819599e-50 | -8.615850e-47 |
Msa0124910 | Msa1365820 | 0.830413 | 2.978516e-55 | -8.615850e-47 |
Msa0124910 | Msa1366150 | 0.844930 | 5.573228e-59 | -8.615850e-47 |
Msa0124910 | Msa1368390 | 0.829613 | 4.666801e-55 | -8.615850e-47 |
Msa0124910 | Msa1381260 | 0.804227 | 2.390273e-49 | -8.615850e-47 |
Msa0124910 | Msa1383820 | 0.826077 | 3.306776e-54 | -8.615850e-47 |
Msa0124910 | Msa1384150 | 0.803338 | 3.657048e-49 | -8.615850e-47 |
Msa0124910 | Msa1387440 | 0.838872 | 2.221504e-57 | -8.615850e-47 |
Msa0124910 | Msa1391500 | 0.876435 | 1.399274e-68 | -8.615850e-47 |
Msa0124910 | Msa1397270 | 0.803673 | 3.116253e-49 | -8.615850e-47 |
Msa0124910 | Msa1398810 | 0.892980 | 9.617035e-75 | -8.615850e-47 |
Msa0124910 | Msa1405460 | 0.825349 | 4.919228e-54 | -8.615850e-47 |
Msa0124910 | Msa1407840 | 0.862770 | 4.004112e-64 | -8.615850e-47 |
Msa0124910 | Msa1412000 | 0.841698 | 4.057820e-58 | -8.615850e-47 |
Msa0124910 | Msa1414390 | 0.817645 | 2.961045e-52 | -8.615850e-47 |
Msa0124910 | Msa1427110 | 0.839444 | 1.578519e-57 | -8.615850e-47 |
Msa0124910 | Msa1429070 | 0.821111 | 4.803789e-53 | -8.615850e-47 |
Msa0124910 | Msa1437810 | 0.862836 | 3.821466e-64 | -8.615850e-47 |
Msa0124910 | Msa1447100 | 0.853638 | 2.093262e-61 | -8.615850e-47 |
Msa0124910 | Msa1449900 | 0.841081 | 5.897917e-58 | -8.615850e-47 |
Msa0124910 | Msa1454500 | 0.858822 | 6.326245e-63 | -8.615850e-47 |
Msa0124910 | Msa1457770 | 0.818218 | 2.198445e-52 | -8.615850e-47 |
Msa0124910 | Msa1457890 | 0.808305 | 3.305749e-50 | -8.615850e-47 |
Msa0124910 | Msa1458790 | 0.813770 | 2.163168e-51 | -8.615850e-47 |
Msa0124910 | Msa1461370 | 0.807480 | 4.951443e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0124910 | MtrunA17_Chr1g0186151 | 98.418 | 316 | 5 | 0 | 1 | 316 | 1 | 316 | 0.0 | 632 |
Msa0124910 | MtrunA17_Chr1g0168311 | 69.868 | 302 | 75 | 3 | 1 | 298 | 1 | 290 | 1.90e-146 | 414 |
Msa0124910 | MtrunA17_Chr7g0262011 | 48.789 | 289 | 131 | 4 | 11 | 298 | 83 | 355 | 1.65e-88 | 269 |
Msa0124910 | MtrunA17_Chr1g0190321 | 39.130 | 299 | 156 | 9 | 12 | 298 | 10 | 294 | 2.57e-63 | 202 |
Msa0124910 | MtrunA17_Chr5g0434531 | 29.553 | 291 | 185 | 5 | 9 | 297 | 4 | 276 | 3.49e-34 | 126 |
Msa0124910 | MtrunA17_Chr3g0110311 | 30.822 | 292 | 172 | 6 | 6 | 293 | 5 | 270 | 1.07e-33 | 124 |
Msa0124910 | MtrunA17_Chr7g0230381 | 28.826 | 281 | 166 | 8 | 5 | 275 | 11 | 267 | 1.51e-30 | 116 |
Msa0124910 | MtrunA17_Chr8g0391511 | 28.881 | 277 | 182 | 5 | 26 | 299 | 25 | 289 | 1.79e-30 | 116 |
Msa0124910 | MtrunA17_Chr7g0234231 | 22.835 | 254 | 158 | 4 | 8 | 241 | 4 | 239 | 1.17e-16 | 78.2 |
Msa0124910 | MtrunA17_Chr1g0205771 | 25.769 | 260 | 166 | 8 | 47 | 290 | 54 | 302 | 1.37e-15 | 77.4 |
Msa0124910 | MtrunA17_Chr1g0206291 | 25.101 | 247 | 160 | 9 | 9 | 237 | 23 | 262 | 5.99e-15 | 75.5 |
Msa0124910 | MtrunA17_Chr6g0475001 | 24.149 | 323 | 188 | 11 | 1 | 281 | 1 | 308 | 9.77e-15 | 74.7 |
Msa0124910 | MtrunA17_Chr5g0394001 | 26.168 | 214 | 143 | 4 | 38 | 237 | 35 | 247 | 3.29e-14 | 73.2 |
Msa0124910 | MtrunA17_Chr3g0109411 | 27.679 | 224 | 149 | 5 | 21 | 234 | 18 | 238 | 4.61e-14 | 72.8 |
Msa0124910 | MtrunA17_Chr6g0474901 | 23.462 | 260 | 159 | 5 | 44 | 270 | 33 | 285 | 9.32e-14 | 72.0 |
Msa0124910 | MtrunA17_Chr6g0475201 | 23.108 | 251 | 175 | 6 | 1 | 237 | 1 | 247 | 2.08e-13 | 70.9 |
Msa0124910 | MtrunA17_Chr3g0081001 | 22.785 | 237 | 170 | 5 | 8 | 234 | 7 | 240 | 2.02e-12 | 67.8 |
Msa0124910 | MtrunA17_Chr5g0428531 | 25.103 | 243 | 160 | 9 | 9 | 236 | 9 | 244 | 2.26e-12 | 66.6 |
Msa0124910 | MtrunA17_Chr5g0394021 | 23.045 | 243 | 154 | 6 | 68 | 292 | 68 | 295 | 2.32e-12 | 67.8 |
Msa0124910 | MtrunA17_Chr1g0206351 | 25.541 | 231 | 135 | 7 | 32 | 237 | 33 | 251 | 2.77e-12 | 67.4 |
Msa0124910 | MtrunA17_Chr6g0475091 | 26.050 | 238 | 143 | 7 | 23 | 237 | 30 | 257 | 4.08e-12 | 67.0 |
Msa0124910 | MtrunA17_Chr6g0474871 | 25.581 | 301 | 172 | 12 | 6 | 270 | 5 | 289 | 1.33e-11 | 65.5 |
Msa0124910 | MtrunA17_Chr6g0474861 | 25.000 | 240 | 161 | 7 | 11 | 236 | 6 | 240 | 3.15e-11 | 64.3 |
Msa0124910 | MtrunA17_Chr6g0474971 | 24.809 | 262 | 153 | 9 | 44 | 270 | 33 | 285 | 3.40e-11 | 63.2 |
Msa0124910 | MtrunA17_Chr3g0081031 | 23.792 | 269 | 167 | 9 | 12 | 252 | 22 | 280 | 4.70e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0124910 | AT1G04520.1 | 67.230 | 296 | 89 | 2 | 8 | 297 | 10 | 303 | 1.27e-135 | 387 |
Msa0124910 | AT2G33330.1 | 65.116 | 301 | 100 | 3 | 1 | 297 | 1 | 300 | 9.08e-134 | 382 |
Msa0124910 | AT5G43980.1 | 44.330 | 291 | 136 | 5 | 25 | 300 | 20 | 299 | 7.48e-78 | 240 |
Msa0124910 | AT3G04370.1 | 35.738 | 305 | 154 | 6 | 24 | 298 | 25 | 317 | 7.97e-59 | 192 |
Msa0124910 | AT3G04370.2 | 35.197 | 304 | 156 | 5 | 24 | 298 | 25 | 316 | 9.01e-59 | 191 |
Msa0124910 | AT5G37660.1 | 30.996 | 271 | 168 | 6 | 11 | 279 | 15 | 268 | 4.51e-34 | 126 |
Msa0124910 | AT5G37660.2 | 30.996 | 271 | 168 | 6 | 11 | 279 | 15 | 268 | 5.23e-34 | 126 |
Msa0124910 | AT3G60720.3 | 29.044 | 272 | 165 | 6 | 33 | 296 | 29 | 280 | 2.68e-31 | 119 |
Msa0124910 | AT3G60720.1 | 28.889 | 270 | 164 | 6 | 33 | 294 | 29 | 278 | 2.83e-30 | 116 |
Msa0124910 | AT2G01660.3 | 29.966 | 297 | 185 | 9 | 11 | 300 | 7 | 287 | 5.05e-29 | 113 |
Msa0124910 | AT2G01660.1 | 30.201 | 298 | 184 | 10 | 11 | 300 | 7 | 288 | 5.54e-29 | 113 |
Msa0124910 | AT2G01660.2 | 31.034 | 232 | 142 | 7 | 26 | 250 | 20 | 240 | 7.82e-26 | 103 |
Msa0124910 | AT1G70690.1 | 28.571 | 301 | 183 | 8 | 10 | 296 | 9 | 291 | 2.05e-24 | 100 |
Msa0124910 | AT3G60720.2 | 27.885 | 208 | 139 | 4 | 33 | 233 | 29 | 232 | 7.11e-24 | 98.2 |
Msa0124910 | AT5G48540.1 | 23.077 | 221 | 156 | 5 | 34 | 241 | 24 | 243 | 1.88e-16 | 78.2 |
Msa0124910 | AT5G40380.1 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 4.55e-15 | 76.3 |
Msa0124910 | AT5G40380.3 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 5.43e-15 | 75.9 |
Msa0124910 | AT5G40380.2 | 27.946 | 297 | 175 | 12 | 9 | 296 | 12 | 278 | 5.80e-15 | 75.9 |
Msa0124910 | AT4G05200.1 | 23.125 | 320 | 221 | 10 | 12 | 309 | 11 | 327 | 8.97e-15 | 75.5 |
Msa0124910 | AT4G05200.2 | 23.125 | 320 | 221 | 10 | 12 | 309 | 29 | 345 | 9.16e-15 | 75.5 |
Msa0124910 | AT5G41290.1 | 24.468 | 282 | 192 | 6 | 6 | 272 | 5 | 280 | 7.87e-13 | 68.2 |
Find 92 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCCATATGAATGAATATTT+TGG | 0.162498 | 1_3:+52776271 | Msa0124910:three_prime_UTR |
TCTGCAAGAGTTCAGCTTTC+AGG | 0.163538 | 1_3:+52774856 | Msa0124910:CDS |
GCTCTCTCTTCTTCTGGTTT+TGG | 0.207236 | 1_3:-52774236 | None:intergenic |
TGCATTGCTCTCTCTTCTTC+TGG | 0.207247 | 1_3:-52774242 | None:intergenic |
TCTGGTTACTCTTCATCTTT+TGG | 0.217123 | 1_3:+52775270 | Msa0124910:CDS |
GTATTGGGATTCACTTTCTT+TGG | 0.253502 | 1_3:-52774212 | None:intergenic |
ATCCAAAATATTCATTCATA+TGG | 0.266393 | 1_3:-52776273 | None:intergenic |
GGAAAAGAATCAAATGGTTT+TGG | 0.277426 | 1_3:-52774351 | None:intergenic |
GAATGTGGAAGTTCTATTTC+AGG | 0.278336 | 1_3:+52775150 | Msa0124910:CDS |
GATTCTTGATATATATCTTT+TGG | 0.281699 | 1_3:+52776065 | Msa0124910:three_prime_UTR |
GAATCAAAACATGGTTGTTT+TGG | 0.289029 | 1_3:-52774459 | None:intergenic |
TGGGAGTAAGGAAAAGGATT+TGG | 0.320657 | 1_3:-52774272 | None:intergenic |
AAGACTGTGGCAATAATATT+AGG | 0.324267 | 1_3:+52775784 | Msa0124910:CDS |
GGTGGTGGATCATCTTCTTC+TGG | 0.327218 | 1_3:+52775252 | Msa0124910:CDS |
TATTGGGATTCACTTTCTTT+GGG | 0.331068 | 1_3:-52774211 | None:intergenic |
CCACCCTTTGGAACCCCATT+AGG | 0.331693 | 1_3:-52775216 | None:intergenic |
AATCCACCTCAAGAAGAATT+TGG | 0.332910 | 1_3:-52776042 | None:intergenic |
AGATACCTGTGATGCTGTTT+TGG | 0.333639 | 1_3:-52774741 | None:intergenic |
TAGACCAAAGTTGTGTAATC+AGG | 0.371990 | 1_3:-52774589 | None:intergenic |
AAGATGATGATTTAGAGAAA+TGG | 0.375671 | 1_3:-52774564 | None:intergenic |
GGGAGTAAGGAAAAGGATTT+GGG | 0.378219 | 1_3:-52774271 | None:intergenic |
CAAGACTAATTCTTGTAGTT+AGG | 0.381469 | 1_3:+52776156 | Msa0124910:three_prime_UTR |
GATTGTGAATATGCACCATT+TGG | 0.394933 | 1_3:-52774643 | None:intergenic |
TCCAAAATATTCATTCATAT+GGG | 0.397991 | 1_3:-52776272 | None:intergenic |
AGATGATGATTTAGAGAAAT+GGG | 0.405156 | 1_3:-52774563 | None:intergenic |
AAGGGTGGTCATTCTTCATC+TGG | 0.421635 | 1_3:+52775231 | Msa0124910:CDS |
TTCTCCTGATTACACAACTT+TGG | 0.429549 | 1_3:+52774585 | Msa0124910:CDS |
TGGTATCATTACAAGGGAAA+AGG | 0.439290 | 1_3:+52776240 | Msa0124910:three_prime_UTR |
GAAGAACAAAAGAAGAAAGA+GGG | 0.456695 | 1_3:-52774527 | None:intergenic |
TTATCAAGCTTTGTATGTGA+TGG | 0.456880 | 1_3:+52775053 | Msa0124910:CDS |
AGGTTCTTCAAAACAACAAC+TGG | 0.461798 | 1_3:+52774712 | Msa0124910:CDS |
AATGGTGTTGTGAGTAATCA+TGG | 0.467963 | 1_3:+52775015 | Msa0124910:CDS |
CATAGTTTGTCTGAGAGAAC+TGG | 0.468018 | 1_3:-52774820 | None:intergenic |
ACAACAAATGCTGCTGGAAG+AGG | 0.468669 | 1_3:+52774952 | Msa0124910:CDS |
TACATGCTGTACGAGGTTGC+TGG | 0.468867 | 1_3:+52774883 | Msa0124910:CDS |
GGGAGATAGAGAAAGAATCT+AGG | 0.469905 | 1_3:+52776116 | Msa0124910:three_prime_UTR |
GGTCAGTGTGAGGGTGATGT+TGG | 0.474760 | 1_3:+52775075 | Msa0124910:CDS |
GATGAAGAATGACCACCCTT+TGG | 0.474944 | 1_3:-52775228 | None:intergenic |
AAGCTGAACTCTTGCAGAGA+TGG | 0.484956 | 1_3:-52774851 | None:intergenic |
CAGATTCTCTTCAAGACTTG+TGG | 0.485266 | 1_3:+52774928 | Msa0124910:CDS |
ATTCACTTTCTTTGGGTGCA+AGG | 0.487590 | 1_3:-52774204 | None:intergenic |
TGAAGAACAAAAGAAGAAAG+AGG | 0.494984 | 1_3:-52774528 | None:intergenic |
TTCAAAACAACAACTGGTAA+TGG | 0.498720 | 1_3:+52774718 | Msa0124910:CDS |
GGTTAAGGAAAAGAATCAAA+TGG | 0.504695 | 1_3:-52774357 | None:intergenic |
TGTGGAACAACAAATGCTGC+TGG | 0.508236 | 1_3:+52774946 | Msa0124910:CDS |
AGATTTGTGGTAAATAGACT+TGG | 0.510548 | 1_3:+52776095 | Msa0124910:three_prime_UTR |
TTGTGAGATCTCCTCTGCAT+TGG | 0.514398 | 1_3:-52774765 | None:intergenic |
AGAATATGGGAGTAAGGAAA+AGG | 0.515515 | 1_3:-52774278 | None:intergenic |
GGTCATTCTTCATCTGGTGG+TGG | 0.515877 | 1_3:+52775237 | Msa0124910:CDS |
GTTATGACAGGACAAAATAC+AGG | 0.519094 | 1_3:+52775760 | Msa0124910:intron |
AATCTAGGACTGTTGAATGT+GGG | 0.519681 | 1_3:+52776131 | Msa0124910:three_prime_UTR |
AATGGCCAAAACAGCATCAC+AGG | 0.526879 | 1_3:+52774736 | Msa0124910:CDS |
ATCTGCATCCCTGAAACTTG+TGG | 0.533086 | 1_3:-52774910 | None:intergenic |
TTATCCTAATGGGGTTCCAA+AGG | 0.535083 | 1_3:+52775212 | Msa0124910:CDS |
TATCAAGCTTTGTATGTGAT+GGG | 0.536644 | 1_3:+52775054 | Msa0124910:CDS |
GATGTTGGTGATTCTGATTG+TGG | 0.539277 | 1_3:+52775090 | Msa0124910:CDS |
TATCCTAATGGGGTTCCAAA+GGG | 0.541401 | 1_3:+52775213 | Msa0124910:CDS |
GAAACATTCACAGATCCAAA+TGG | 0.542666 | 1_3:+52774628 | Msa0124910:CDS |
TTATATGCTTGCTATTTGCA+AGG | 0.544026 | 1_3:+52775833 | Msa0124910:CDS |
TTATTGACTGTAGAAGAAGA+TGG | 0.558415 | 1_3:+52776006 | Msa0124910:CDS |
AGGCCAAATTCTTCTTGAGG+TGG | 0.559342 | 1_3:+52776039 | Msa0124910:exon |
GAATCTAGGACTGTTGAATG+TGG | 0.563094 | 1_3:+52776130 | Msa0124910:three_prime_UTR |
GTGTTGAGATTCAGAGAGGG+GGG | 0.567503 | 1_3:-52774386 | None:intergenic |
TACACAACTTTGGTCTACAA+AGG | 0.569043 | 1_3:+52774595 | Msa0124910:CDS |
GATTTGTGGTAAATAGACTT+GGG | 0.575361 | 1_3:+52776096 | Msa0124910:three_prime_UTR |
CAACAAATGCTGCTGGAAGA+GGG | 0.576463 | 1_3:+52774953 | Msa0124910:CDS |
TATGTGATGGGTCAGTGTGA+GGG | 0.578918 | 1_3:+52775066 | Msa0124910:CDS |
TTGTGTTGAGATTCAGAGAG+GGG | 0.581530 | 1_3:-52774388 | None:intergenic |
TGTGTTGAGATTCAGAGAGG+GGG | 0.585649 | 1_3:-52774387 | None:intergenic |
GGTGGTCATTCTTCATCTGG+TGG | 0.587392 | 1_3:+52775234 | Msa0124910:CDS |
TGTTGAGATTCAGAGAGGGG+GGG | 0.588145 | 1_3:-52774385 | None:intergenic |
GTATGTGATGGGTCAGTGTG+AGG | 0.592839 | 1_3:+52775065 | Msa0124910:CDS |
CTTGTGTTGAGATTCAGAGA+GGG | 0.593113 | 1_3:-52774389 | None:intergenic |
AAGAACAAAAGAAGAAAGAG+GGG | 0.594004 | 1_3:-52774526 | None:intergenic |
CAAAGAGCTCAAGTTGAATG+TGG | 0.597170 | 1_3:+52775135 | Msa0124910:CDS |
TGGAGGCCAAATTCTTCTTG+AGG | 0.599401 | 1_3:+52776036 | Msa0124910:CDS |
AAGAAGATGGTTTACTGTGG+AGG | 0.604602 | 1_3:+52776019 | Msa0124910:CDS |
CCAAAATATTCATTCATATG+GGG | 0.607107 | 1_3:-52776271 | None:intergenic |
ATCTAGGACTGTTGAATGTG+GGG | 0.608364 | 1_3:+52776132 | Msa0124910:three_prime_UTR |
ATTAGGAGGTATAGCTGCTG+TGG | 0.619016 | 1_3:+52775801 | Msa0124910:CDS |
AAATATTCATTCATATGGGG+AGG | 0.619547 | 1_3:-52776268 | None:intergenic |
CCTAATGGGGTTCCAAAGGG+TGG | 0.628137 | 1_3:+52775216 | Msa0124910:CDS |
ACAGGTATCTTCCAATGCAG+AGG | 0.638244 | 1_3:+52774754 | Msa0124910:CDS |
ACTGTGGCAATAATATTAGG+AGG | 0.641949 | 1_3:+52775787 | Msa0124910:CDS |
TGATGAAGAAACGTGATGGT+AGG | 0.645756 | 1_3:+52775860 | Msa0124910:CDS |
AGGTTGTTACATGCTGTACG+AGG | 0.659964 | 1_3:+52774876 | Msa0124910:CDS |
AATTTGATGAAGAAACGTGA+TGG | 0.662013 | 1_3:+52775856 | Msa0124910:CDS |
GTTCTCTCAGACAAACTATG+TGG | 0.667348 | 1_3:+52774823 | Msa0124910:CDS |
ATGGAGAGAGAATCAAAACA+TGG | 0.673903 | 1_3:-52774468 | None:intergenic |
GCTTGTGTTGAGATTCAGAG+AGG | 0.675745 | 1_3:-52774390 | None:intergenic |
TAGAAGAAGATGGTTTACTG+TGG | 0.689143 | 1_3:+52776016 | Msa0124910:CDS |
ACAAAATACAGGAAAGACTG+TGG | 0.709113 | 1_3:+52775771 | Msa0124910:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTGATTTTTTGAGAAA+TGG | - | chr1_3:52774490-52774509 | None:intergenic | 15.0% |
!! | ATTTCTCAAAAAATCAAAAA+TGG | + | chr1_3:52774489-52774508 | Msa0124910:exon | 15.0% |
!! | TTTCTCAAAAAATCAAAAAT+GGG | + | chr1_3:52774490-52774509 | Msa0124910:exon | 15.0% |
!!! | CAATTTTCTCAAATTATTAT+CGG | - | chr1_3:52775461-52775480 | None:intergenic | 15.0% |
!!! | ATTTTTGATTTTTTGAGAAA+TGG | - | chr1_3:52774490-52774509 | None:intergenic | 15.0% |
!! | ATTTCTCAAAAAATCAAAAA+TGG | + | chr1_3:52774489-52774508 | Msa0124910:exon | 15.0% |
!! | TTTCTCAAAAAATCAAAAAT+GGG | + | chr1_3:52774490-52774509 | Msa0124910:exon | 15.0% |
!!! | CAATTTTCTCAAATTATTAT+CGG | - | chr1_3:52775461-52775480 | None:intergenic | 15.0% |
!!! | TTTTTGTTTTTGCAGAATAT+GGG | - | chr1_3:52774294-52774313 | None:intergenic | 20.0% |
!!! | TTTTTTGTTTTTGCAGAATA+TGG | - | chr1_3:52774295-52774314 | None:intergenic | 20.0% |
!!! | AGTTTTAGTTATTATCCTAA+TGG | + | chr1_3:52775201-52775220 | Msa0124910:CDS | 20.0% |
!!! | GTTTTAGTTATTATCCTAAT+GGG | + | chr1_3:52775202-52775221 | Msa0124910:CDS | 20.0% |
!!! | TTTTAGTTATTATCCTAATG+GGG | + | chr1_3:52775203-52775222 | Msa0124910:CDS | 20.0% |
!! | TTATAACACATGAACAATTA+AGG | - | chr1_3:52775652-52775671 | None:intergenic | 20.0% |
!!! | GATTCTTGATATATATCTTT+TGG | + | chr1_3:52776065-52776084 | Msa0124910:three_prime_UTR | 20.0% |
!!! | AGATTTTGTTGTGAAAAAAA+TGG | + | chr1_3:52776184-52776203 | Msa0124910:three_prime_UTR | 20.0% |
!! | TCCAAAATATTCATTCATAT+GGG | - | chr1_3:52776275-52776294 | None:intergenic | 20.0% |
!! | ATCCAAAATATTCATTCATA+TGG | - | chr1_3:52776276-52776295 | None:intergenic | 20.0% |
!!! | TTTTTGTTTTTGCAGAATAT+GGG | - | chr1_3:52774294-52774313 | None:intergenic | 20.0% |
!!! | TTTTTTGTTTTTGCAGAATA+TGG | - | chr1_3:52774295-52774314 | None:intergenic | 20.0% |
!!! | AGTTTTAGTTATTATCCTAA+TGG | + | chr1_3:52775201-52775220 | Msa0124910:CDS | 20.0% |
!!! | GTTTTAGTTATTATCCTAAT+GGG | + | chr1_3:52775202-52775221 | Msa0124910:CDS | 20.0% |
!!! | TTTTAGTTATTATCCTAATG+GGG | + | chr1_3:52775203-52775222 | Msa0124910:CDS | 20.0% |
!! | TTATAACACATGAACAATTA+AGG | - | chr1_3:52775652-52775671 | None:intergenic | 20.0% |
!!! | GATTCTTGATATATATCTTT+TGG | + | chr1_3:52776065-52776084 | Msa0124910:three_prime_UTR | 20.0% |
!!! | AGATTTTGTTGTGAAAAAAA+TGG | + | chr1_3:52776184-52776203 | Msa0124910:three_prime_UTR | 20.0% |
!! | TCCAAAATATTCATTCATAT+GGG | - | chr1_3:52776275-52776294 | None:intergenic | 20.0% |
!! | ATCCAAAATATTCATTCATA+TGG | - | chr1_3:52776276-52776295 | None:intergenic | 20.0% |
!!! | AATCAAATGGTTTTGGTTTT+TGG | - | chr1_3:52774347-52774366 | None:intergenic | 25.0% |
! | AGATGATGATTTAGAGAAAT+GGG | - | chr1_3:52774566-52774585 | None:intergenic | 25.0% |
! | AAGATGATGATTTAGAGAAA+TGG | - | chr1_3:52774567-52774586 | None:intergenic | 25.0% |
!!! | TATCTATTGATTCTGAATGA+TGG | - | chr1_3:52775313-52775332 | None:intergenic | 25.0% |
! | TCAGAATCAATAGATAAGAT+TGG | + | chr1_3:52775317-52775336 | Msa0124910:intron | 25.0% |
!!! | ATAAGATTGGTTTCAATTCT+GGG | + | chr1_3:52775330-52775349 | Msa0124910:intron | 25.0% |
! | TATATATAGTTTCACACAGA+AGG | + | chr1_3:52775591-52775610 | Msa0124910:intron | 25.0% |
! | AACTCTAATTAATCATTGAC+TGG | + | chr1_3:52775721-52775740 | Msa0124910:intron | 25.0% |
!!! | TTGTACATGGTTTTACTATA+TGG | + | chr1_3:52775890-52775909 | Msa0124910:intron | 25.0% |
!!! | TGAAAGTGAGAATTGTTTTT+TGG | + | chr1_3:52776220-52776239 | Msa0124910:three_prime_UTR | 25.0% |
!!! | TGTTTTTTGGTATCATTACA+AGG | + | chr1_3:52776233-52776252 | Msa0124910:three_prime_UTR | 25.0% |
!!! | GTTTTTTGGTATCATTACAA+GGG | + | chr1_3:52776234-52776253 | Msa0124910:three_prime_UTR | 25.0% |
! | CCAAAATATTCATTCATATG+GGG | - | chr1_3:52776274-52776293 | None:intergenic | 25.0% |
!!! | AATCAAATGGTTTTGGTTTT+TGG | - | chr1_3:52774347-52774366 | None:intergenic | 25.0% |
! | AGATGATGATTTAGAGAAAT+GGG | - | chr1_3:52774566-52774585 | None:intergenic | 25.0% |
! | AAGATGATGATTTAGAGAAA+TGG | - | chr1_3:52774567-52774586 | None:intergenic | 25.0% |
!!! | TATCTATTGATTCTGAATGA+TGG | - | chr1_3:52775313-52775332 | None:intergenic | 25.0% |
! | TCAGAATCAATAGATAAGAT+TGG | + | chr1_3:52775317-52775336 | Msa0124910:intron | 25.0% |
!!! | ATAAGATTGGTTTCAATTCT+GGG | + | chr1_3:52775330-52775349 | Msa0124910:intron | 25.0% |
! | TATATATAGTTTCACACAGA+AGG | + | chr1_3:52775591-52775610 | Msa0124910:intron | 25.0% |
! | AACTCTAATTAATCATTGAC+TGG | + | chr1_3:52775721-52775740 | Msa0124910:intron | 25.0% |
!!! | TTGTACATGGTTTTACTATA+TGG | + | chr1_3:52775890-52775909 | Msa0124910:intron | 25.0% |
!!! | TGAAAGTGAGAATTGTTTTT+TGG | + | chr1_3:52776220-52776239 | Msa0124910:three_prime_UTR | 25.0% |
!!! | TGTTTTTTGGTATCATTACA+AGG | + | chr1_3:52776233-52776252 | Msa0124910:three_prime_UTR | 25.0% |
!!! | GTTTTTTGGTATCATTACAA+GGG | + | chr1_3:52776234-52776253 | Msa0124910:three_prime_UTR | 25.0% |
! | CCAAAATATTCATTCATATG+GGG | - | chr1_3:52776274-52776293 | None:intergenic | 25.0% |
TATTGGGATTCACTTTCTTT+GGG | - | chr1_3:52774214-52774233 | None:intergenic | 30.0% | |
!!! | ATGGTTTTGGTTTTTGGTTT+GGG | - | chr1_3:52774341-52774360 | None:intergenic | 30.0% |
!!! | AATGGTTTTGGTTTTTGGTT+TGG | - | chr1_3:52774342-52774361 | None:intergenic | 30.0% |
! | GGAAAAGAATCAAATGGTTT+TGG | - | chr1_3:52774354-52774373 | None:intergenic | 30.0% |
GGTTAAGGAAAAGAATCAAA+TGG | - | chr1_3:52774360-52774379 | None:intergenic | 30.0% | |
!!! | TTTGGTTTTTGGAGGAAAAA+AGG | - | chr1_3:52774444-52774463 | None:intergenic | 30.0% |
!!! | AACATGGTTGTTTTGGTTTT+TGG | - | chr1_3:52774455-52774474 | None:intergenic | 30.0% |
! | GAATCAAAACATGGTTGTTT+TGG | - | chr1_3:52774462-52774481 | None:intergenic | 30.0% |
AAGAACAAAAGAAGAAAGAG+GGG | - | chr1_3:52774529-52774548 | None:intergenic | 30.0% | |
GAAGAACAAAAGAAGAAAGA+GGG | - | chr1_3:52774530-52774549 | None:intergenic | 30.0% | |
TGAAGAACAAAAGAAGAAAG+AGG | - | chr1_3:52774531-52774550 | None:intergenic | 30.0% | |
!! | TTTTGTGGATTGTGAAACTA+AGG | - | chr1_3:52774689-52774708 | None:intergenic | 30.0% |
TTTCACAATCCACAAAAACA+AGG | + | chr1_3:52774692-52774711 | Msa0124910:CDS | 30.0% | |
!!! | TTTGAAGAACCTTGTTTTTG+TGG | - | chr1_3:52774704-52774723 | None:intergenic | 30.0% |
TTCAAAACAACAACTGGTAA+TGG | + | chr1_3:52774718-52774737 | Msa0124910:CDS | 30.0% | |
! | TTATCAAGCTTTGTATGTGA+TGG | + | chr1_3:52775053-52775072 | Msa0124910:CDS | 30.0% |
! | TATCAAGCTTTGTATGTGAT+GGG | + | chr1_3:52775054-52775073 | Msa0124910:CDS | 30.0% |
!! | GATAAGATTGGTTTCAATTC+TGG | + | chr1_3:52775329-52775348 | Msa0124910:intron | 30.0% |
TCTCAAATTATTATCGGTGT+CGG | - | chr1_3:52775455-52775474 | None:intergenic | 30.0% | |
AAGACTGTGGCAATAATATT+AGG | + | chr1_3:52775784-52775803 | Msa0124910:CDS | 30.0% | |
!! | TTATATGCTTGCTATTTGCA+AGG | + | chr1_3:52775833-52775852 | Msa0124910:CDS | 30.0% |
AATTTGATGAAGAAACGTGA+TGG | + | chr1_3:52775856-52775875 | Msa0124910:CDS | 30.0% | |
! | TTATTGACTGTAGAAGAAGA+TGG | + | chr1_3:52776006-52776025 | Msa0124910:CDS | 30.0% |
AGATTTGTGGTAAATAGACT+TGG | + | chr1_3:52776095-52776114 | Msa0124910:three_prime_UTR | 30.0% | |
GATTTGTGGTAAATAGACTT+GGG | + | chr1_3:52776096-52776115 | Msa0124910:three_prime_UTR | 30.0% | |
CAAGACTAATTCTTGTAGTT+AGG | + | chr1_3:52776156-52776175 | Msa0124910:three_prime_UTR | 30.0% | |
AAATATTCATTCATATGGGG+AGG | - | chr1_3:52776271-52776290 | None:intergenic | 30.0% | |
! | CCCCATATGAATGAATATTT+TGG | + | chr1_3:52776271-52776290 | Msa0124910:three_prime_UTR | 30.0% |
TATTGGGATTCACTTTCTTT+GGG | - | chr1_3:52774214-52774233 | None:intergenic | 30.0% | |
!!! | ATGGTTTTGGTTTTTGGTTT+GGG | - | chr1_3:52774341-52774360 | None:intergenic | 30.0% |
!!! | AATGGTTTTGGTTTTTGGTT+TGG | - | chr1_3:52774342-52774361 | None:intergenic | 30.0% |
! | GGAAAAGAATCAAATGGTTT+TGG | - | chr1_3:52774354-52774373 | None:intergenic | 30.0% |
GGTTAAGGAAAAGAATCAAA+TGG | - | chr1_3:52774360-52774379 | None:intergenic | 30.0% | |
!!! | TTTGGTTTTTGGAGGAAAAA+AGG | - | chr1_3:52774444-52774463 | None:intergenic | 30.0% |
!!! | AACATGGTTGTTTTGGTTTT+TGG | - | chr1_3:52774455-52774474 | None:intergenic | 30.0% |
! | GAATCAAAACATGGTTGTTT+TGG | - | chr1_3:52774462-52774481 | None:intergenic | 30.0% |
AAGAACAAAAGAAGAAAGAG+GGG | - | chr1_3:52774529-52774548 | None:intergenic | 30.0% | |
GAAGAACAAAAGAAGAAAGA+GGG | - | chr1_3:52774530-52774549 | None:intergenic | 30.0% | |
TGAAGAACAAAAGAAGAAAG+AGG | - | chr1_3:52774531-52774550 | None:intergenic | 30.0% | |
!! | TTTTGTGGATTGTGAAACTA+AGG | - | chr1_3:52774689-52774708 | None:intergenic | 30.0% |
TTTCACAATCCACAAAAACA+AGG | + | chr1_3:52774692-52774711 | Msa0124910:CDS | 30.0% | |
!!! | TTTGAAGAACCTTGTTTTTG+TGG | - | chr1_3:52774704-52774723 | None:intergenic | 30.0% |
TTCAAAACAACAACTGGTAA+TGG | + | chr1_3:52774718-52774737 | Msa0124910:CDS | 30.0% | |
! | TTATCAAGCTTTGTATGTGA+TGG | + | chr1_3:52775053-52775072 | Msa0124910:CDS | 30.0% |
! | TATCAAGCTTTGTATGTGAT+GGG | + | chr1_3:52775054-52775073 | Msa0124910:CDS | 30.0% |
!! | GATAAGATTGGTTTCAATTC+TGG | + | chr1_3:52775329-52775348 | Msa0124910:intron | 30.0% |
TCTCAAATTATTATCGGTGT+CGG | - | chr1_3:52775455-52775474 | None:intergenic | 30.0% | |
AAGACTGTGGCAATAATATT+AGG | + | chr1_3:52775784-52775803 | Msa0124910:CDS | 30.0% | |
!! | TTATATGCTTGCTATTTGCA+AGG | + | chr1_3:52775833-52775852 | Msa0124910:CDS | 30.0% |
AATTTGATGAAGAAACGTGA+TGG | + | chr1_3:52775856-52775875 | Msa0124910:CDS | 30.0% | |
! | TTATTGACTGTAGAAGAAGA+TGG | + | chr1_3:52776006-52776025 | Msa0124910:CDS | 30.0% |
AGATTTGTGGTAAATAGACT+TGG | + | chr1_3:52776095-52776114 | Msa0124910:three_prime_UTR | 30.0% | |
GATTTGTGGTAAATAGACTT+GGG | + | chr1_3:52776096-52776115 | Msa0124910:three_prime_UTR | 30.0% | |
CAAGACTAATTCTTGTAGTT+AGG | + | chr1_3:52776156-52776175 | Msa0124910:three_prime_UTR | 30.0% | |
AAATATTCATTCATATGGGG+AGG | - | chr1_3:52776271-52776290 | None:intergenic | 30.0% | |
! | CCCCATATGAATGAATATTT+TGG | + | chr1_3:52776271-52776290 | Msa0124910:three_prime_UTR | 30.0% |
GTATTGGGATTCACTTTCTT+TGG | - | chr1_3:52774215-52774234 | None:intergenic | 35.0% | |
!!! | TCTTCTGGTTTTGGTGTATT+GGG | - | chr1_3:52774230-52774249 | None:intergenic | 35.0% |
!!! | TTCTTCTGGTTTTGGTGTAT+TGG | - | chr1_3:52774231-52774250 | None:intergenic | 35.0% |
AGAATATGGGAGTAAGGAAA+AGG | - | chr1_3:52774281-52774300 | None:intergenic | 35.0% | |
! | TTTTGCAGAATATGGGAGTA+AGG | - | chr1_3:52774287-52774306 | None:intergenic | 35.0% |
!!! | TTTTGGTTTGGGTTGATTGT+TGG | - | chr1_3:52774330-52774349 | None:intergenic | 35.0% |
! | GGAAAAAAGGTTTTCTAGGT+TGG | - | chr1_3:52774431-52774450 | None:intergenic | 35.0% |
! | TGGAGGAAAAAAGGTTTTCT+AGG | - | chr1_3:52774435-52774454 | None:intergenic | 35.0% |
!!! | ATGGTTGTTTTGGTTTTTGG+AGG | - | chr1_3:52774452-52774471 | None:intergenic | 35.0% |
ATGGAGAGAGAATCAAAACA+TGG | - | chr1_3:52774471-52774490 | None:intergenic | 35.0% | |
!!! | AGAAGAAAGAGGGGTTTTTT+TGG | - | chr1_3:52774520-52774539 | None:intergenic | 35.0% |
TTCTCCTGATTACACAACTT+TGG | + | chr1_3:52774585-52774604 | Msa0124910:CDS | 35.0% | |
TAGACCAAAGTTGTGTAATC+AGG | - | chr1_3:52774592-52774611 | None:intergenic | 35.0% | |
TACACAACTTTGGTCTACAA+AGG | + | chr1_3:52774595-52774614 | Msa0124910:CDS | 35.0% | |
GAAACATTCACAGATCCAAA+TGG | + | chr1_3:52774628-52774647 | Msa0124910:CDS | 35.0% | |
GATTGTGAATATGCACCATT+TGG | - | chr1_3:52774646-52774665 | None:intergenic | 35.0% | |
! | CAATCTCTTTCAGCACTTTT+TGG | + | chr1_3:52774661-52774680 | Msa0124910:CDS | 35.0% |
AGGTTCTTCAAAACAACAAC+TGG | + | chr1_3:52774712-52774731 | Msa0124910:CDS | 35.0% | |
!! | GCTTTTTCTGTGATGGAAAA+TGG | + | chr1_3:52774997-52775016 | Msa0124910:CDS | 35.0% |
!! | AATGGTGTTGTGAGTAATCA+TGG | + | chr1_3:52775015-52775034 | Msa0124910:CDS | 35.0% |
GAATGTGGAAGTTCTATTTC+AGG | + | chr1_3:52775150-52775169 | Msa0124910:CDS | 35.0% | |
! | TCTGGTTACTCTTCATCTTT+TGG | + | chr1_3:52775270-52775289 | Msa0124910:CDS | 35.0% |
CTCAATTTAGCAATGGCAAT+TGG | + | chr1_3:52775616-52775635 | Msa0124910:intron | 35.0% | |
! | ATTAATCATTGACTGGTGTG+TGG | + | chr1_3:52775728-52775747 | Msa0124910:intron | 35.0% |
TGGCTAAATGATGTTATGAC+AGG | + | chr1_3:52775748-52775767 | Msa0124910:intron | 35.0% | |
GTTATGACAGGACAAAATAC+AGG | + | chr1_3:52775760-52775779 | Msa0124910:intron | 35.0% | |
ACAAAATACAGGAAAGACTG+TGG | + | chr1_3:52775771-52775790 | Msa0124910:CDS | 35.0% | |
ACTGTGGCAATAATATTAGG+AGG | + | chr1_3:52775787-52775806 | Msa0124910:CDS | 35.0% | |
TAGAAGAAGATGGTTTACTG+TGG | + | chr1_3:52776016-52776035 | Msa0124910:CDS | 35.0% | |
AATCCACCTCAAGAAGAATT+TGG | - | chr1_3:52776045-52776064 | None:intergenic | 35.0% | |
!! | TTTTGGCTGAAAGAGATTTG+TGG | + | chr1_3:52776082-52776101 | Msa0124910:three_prime_UTR | 35.0% |
! | AATCTAGGACTGTTGAATGT+GGG | + | chr1_3:52776131-52776150 | Msa0124910:three_prime_UTR | 35.0% |
TGGTATCATTACAAGGGAAA+AGG | + | chr1_3:52776240-52776259 | Msa0124910:three_prime_UTR | 35.0% | |
GTATTGGGATTCACTTTCTT+TGG | - | chr1_3:52774215-52774234 | None:intergenic | 35.0% | |
!!! | TCTTCTGGTTTTGGTGTATT+GGG | - | chr1_3:52774230-52774249 | None:intergenic | 35.0% |
!!! | TTCTTCTGGTTTTGGTGTAT+TGG | - | chr1_3:52774231-52774250 | None:intergenic | 35.0% |
AGAATATGGGAGTAAGGAAA+AGG | - | chr1_3:52774281-52774300 | None:intergenic | 35.0% | |
! | TTTTGCAGAATATGGGAGTA+AGG | - | chr1_3:52774287-52774306 | None:intergenic | 35.0% |
!!! | TTTTGGTTTGGGTTGATTGT+TGG | - | chr1_3:52774330-52774349 | None:intergenic | 35.0% |
! | GGAAAAAAGGTTTTCTAGGT+TGG | - | chr1_3:52774431-52774450 | None:intergenic | 35.0% |
! | TGGAGGAAAAAAGGTTTTCT+AGG | - | chr1_3:52774435-52774454 | None:intergenic | 35.0% |
!!! | ATGGTTGTTTTGGTTTTTGG+AGG | - | chr1_3:52774452-52774471 | None:intergenic | 35.0% |
ATGGAGAGAGAATCAAAACA+TGG | - | chr1_3:52774471-52774490 | None:intergenic | 35.0% | |
!!! | AGAAGAAAGAGGGGTTTTTT+TGG | - | chr1_3:52774520-52774539 | None:intergenic | 35.0% |
TTCTCCTGATTACACAACTT+TGG | + | chr1_3:52774585-52774604 | Msa0124910:CDS | 35.0% | |
TAGACCAAAGTTGTGTAATC+AGG | - | chr1_3:52774592-52774611 | None:intergenic | 35.0% | |
TACACAACTTTGGTCTACAA+AGG | + | chr1_3:52774595-52774614 | Msa0124910:CDS | 35.0% | |
GAAACATTCACAGATCCAAA+TGG | + | chr1_3:52774628-52774647 | Msa0124910:CDS | 35.0% | |
GATTGTGAATATGCACCATT+TGG | - | chr1_3:52774646-52774665 | None:intergenic | 35.0% | |
! | CAATCTCTTTCAGCACTTTT+TGG | + | chr1_3:52774661-52774680 | Msa0124910:CDS | 35.0% |
AGGTTCTTCAAAACAACAAC+TGG | + | chr1_3:52774712-52774731 | Msa0124910:CDS | 35.0% | |
!! | GCTTTTTCTGTGATGGAAAA+TGG | + | chr1_3:52774997-52775016 | Msa0124910:CDS | 35.0% |
!! | AATGGTGTTGTGAGTAATCA+TGG | + | chr1_3:52775015-52775034 | Msa0124910:CDS | 35.0% |
GAATGTGGAAGTTCTATTTC+AGG | + | chr1_3:52775150-52775169 | Msa0124910:CDS | 35.0% | |
! | TCTGGTTACTCTTCATCTTT+TGG | + | chr1_3:52775270-52775289 | Msa0124910:CDS | 35.0% |
CTCAATTTAGCAATGGCAAT+TGG | + | chr1_3:52775616-52775635 | Msa0124910:intron | 35.0% | |
! | ATTAATCATTGACTGGTGTG+TGG | + | chr1_3:52775728-52775747 | Msa0124910:intron | 35.0% |
TGGCTAAATGATGTTATGAC+AGG | + | chr1_3:52775748-52775767 | Msa0124910:intron | 35.0% | |
GTTATGACAGGACAAAATAC+AGG | + | chr1_3:52775760-52775779 | Msa0124910:intron | 35.0% | |
ACAAAATACAGGAAAGACTG+TGG | + | chr1_3:52775771-52775790 | Msa0124910:CDS | 35.0% | |
ACTGTGGCAATAATATTAGG+AGG | + | chr1_3:52775787-52775806 | Msa0124910:CDS | 35.0% | |
TAGAAGAAGATGGTTTACTG+TGG | + | chr1_3:52776016-52776035 | Msa0124910:CDS | 35.0% | |
AATCCACCTCAAGAAGAATT+TGG | - | chr1_3:52776045-52776064 | None:intergenic | 35.0% | |
!! | TTTTGGCTGAAAGAGATTTG+TGG | + | chr1_3:52776082-52776101 | Msa0124910:three_prime_UTR | 35.0% |
! | AATCTAGGACTGTTGAATGT+GGG | + | chr1_3:52776131-52776150 | Msa0124910:three_prime_UTR | 35.0% |
TGGTATCATTACAAGGGAAA+AGG | + | chr1_3:52776240-52776259 | Msa0124910:three_prime_UTR | 35.0% | |
GGGAGTAAGGAAAAGGATTT+GGG | - | chr1_3:52774274-52774293 | None:intergenic | 40.0% | |
TGGGAGTAAGGAAAAGGATT+TGG | - | chr1_3:52774275-52774294 | None:intergenic | 40.0% | |
TTGTGTTGAGATTCAGAGAG+GGG | - | chr1_3:52774391-52774410 | None:intergenic | 40.0% | |
CTTGTGTTGAGATTCAGAGA+GGG | - | chr1_3:52774392-52774411 | None:intergenic | 40.0% | |
!! | AGATACCTGTGATGCTGTTT+TGG | - | chr1_3:52774744-52774763 | None:intergenic | 40.0% |
! | CATAGTTTGTCTGAGAGAAC+TGG | - | chr1_3:52774823-52774842 | None:intergenic | 40.0% |
GTTCTCTCAGACAAACTATG+TGG | + | chr1_3:52774823-52774842 | Msa0124910:CDS | 40.0% | |
!! | CTGGTTTTCCACAAGTTTCA+GGG | + | chr1_3:52774902-52774921 | Msa0124910:CDS | 40.0% |
CAGATTCTCTTCAAGACTTG+TGG | + | chr1_3:52774928-52774947 | Msa0124910:CDS | 40.0% | |
!!! | AGACACTGCTTTTTCTGTGA+TGG | + | chr1_3:52774990-52775009 | Msa0124910:CDS | 40.0% |
!! | GATGTTGGTGATTCTGATTG+TGG | + | chr1_3:52775090-52775109 | Msa0124910:CDS | 40.0% |
!! | CAAAGAGCTCAAGTTGAATG+TGG | + | chr1_3:52775135-52775154 | Msa0124910:CDS | 40.0% |
TTATCCTAATGGGGTTCCAA+AGG | + | chr1_3:52775212-52775231 | Msa0124910:CDS | 40.0% | |
TATCCTAATGGGGTTCCAAA+GGG | + | chr1_3:52775213-52775232 | Msa0124910:CDS | 40.0% | |
! | GGTTACTCTTCATCTTTTGG+TGG | + | chr1_3:52775273-52775292 | Msa0124910:CDS | 40.0% |
!! | GTCAACTTGTTGTGTTGTGT+AGG | + | chr1_3:52775502-52775521 | Msa0124910:intron | 40.0% |
! | ACCTTCAATCTGAAGTGTCA+AGG | + | chr1_3:52775565-52775584 | Msa0124910:intron | 40.0% |
ACCTTGACACTTCAGATTGA+AGG | - | chr1_3:52775569-52775588 | None:intergenic | 40.0% | |
GAAGGAGCTCAATTTAGCAA+TGG | + | chr1_3:52775609-52775628 | Msa0124910:intron | 40.0% | |
TGATGAAGAAACGTGATGGT+AGG | + | chr1_3:52775860-52775879 | Msa0124910:CDS | 40.0% | |
AAGAAGATGGTTTACTGTGG+AGG | + | chr1_3:52776019-52776038 | Msa0124910:CDS | 40.0% | |
GGGAGATAGAGAAAGAATCT+AGG | + | chr1_3:52776116-52776135 | Msa0124910:three_prime_UTR | 40.0% | |
! | GAATCTAGGACTGTTGAATG+TGG | + | chr1_3:52776130-52776149 | Msa0124910:three_prime_UTR | 40.0% |
! | ATCTAGGACTGTTGAATGTG+GGG | + | chr1_3:52776132-52776151 | Msa0124910:three_prime_UTR | 40.0% |
TTCACTTTCTTTGGGTGCAA+GGG | - | chr1_3:52774206-52774225 | None:intergenic | 40.0% | |
ATTCACTTTCTTTGGGTGCA+AGG | - | chr1_3:52774207-52774226 | None:intergenic | 40.0% | |
GGGAGTAAGGAAAAGGATTT+GGG | - | chr1_3:52774274-52774293 | None:intergenic | 40.0% | |
TGGGAGTAAGGAAAAGGATT+TGG | - | chr1_3:52774275-52774294 | None:intergenic | 40.0% | |
TTGTGTTGAGATTCAGAGAG+GGG | - | chr1_3:52774391-52774410 | None:intergenic | 40.0% | |
CTTGTGTTGAGATTCAGAGA+GGG | - | chr1_3:52774392-52774411 | None:intergenic | 40.0% | |
!! | AGATACCTGTGATGCTGTTT+TGG | - | chr1_3:52774744-52774763 | None:intergenic | 40.0% |
! | CATAGTTTGTCTGAGAGAAC+TGG | - | chr1_3:52774823-52774842 | None:intergenic | 40.0% |
GTTCTCTCAGACAAACTATG+TGG | + | chr1_3:52774823-52774842 | Msa0124910:CDS | 40.0% | |
!! | CTGGTTTTCCACAAGTTTCA+GGG | + | chr1_3:52774902-52774921 | Msa0124910:CDS | 40.0% |
CAGATTCTCTTCAAGACTTG+TGG | + | chr1_3:52774928-52774947 | Msa0124910:CDS | 40.0% | |
!!! | AGACACTGCTTTTTCTGTGA+TGG | + | chr1_3:52774990-52775009 | Msa0124910:CDS | 40.0% |
!! | GATGTTGGTGATTCTGATTG+TGG | + | chr1_3:52775090-52775109 | Msa0124910:CDS | 40.0% |
!! | CAAAGAGCTCAAGTTGAATG+TGG | + | chr1_3:52775135-52775154 | Msa0124910:CDS | 40.0% |
TTATCCTAATGGGGTTCCAA+AGG | + | chr1_3:52775212-52775231 | Msa0124910:CDS | 40.0% | |
TATCCTAATGGGGTTCCAAA+GGG | + | chr1_3:52775213-52775232 | Msa0124910:CDS | 40.0% | |
! | GGTTACTCTTCATCTTTTGG+TGG | + | chr1_3:52775273-52775292 | Msa0124910:CDS | 40.0% |
!! | GTCAACTTGTTGTGTTGTGT+AGG | + | chr1_3:52775502-52775521 | Msa0124910:intron | 40.0% |
! | ACCTTCAATCTGAAGTGTCA+AGG | + | chr1_3:52775565-52775584 | Msa0124910:intron | 40.0% |
ACCTTGACACTTCAGATTGA+AGG | - | chr1_3:52775569-52775588 | None:intergenic | 40.0% | |
GAAGGAGCTCAATTTAGCAA+TGG | + | chr1_3:52775609-52775628 | Msa0124910:intron | 40.0% | |
TGATGAAGAAACGTGATGGT+AGG | + | chr1_3:52775860-52775879 | Msa0124910:CDS | 40.0% | |
AAGAAGATGGTTTACTGTGG+AGG | + | chr1_3:52776019-52776038 | Msa0124910:CDS | 40.0% | |
GGGAGATAGAGAAAGAATCT+AGG | + | chr1_3:52776116-52776135 | Msa0124910:three_prime_UTR | 40.0% | |
! | GAATCTAGGACTGTTGAATG+TGG | + | chr1_3:52776130-52776149 | Msa0124910:three_prime_UTR | 40.0% |
! | ATCTAGGACTGTTGAATGTG+GGG | + | chr1_3:52776132-52776151 | Msa0124910:three_prime_UTR | 40.0% |
!!! | GCTCTCTCTTCTTCTGGTTT+TGG | - | chr1_3:52774239-52774258 | None:intergenic | 45.0% |
TGCATTGCTCTCTCTTCTTC+TGG | - | chr1_3:52774245-52774264 | None:intergenic | 45.0% | |
TGTGTTGAGATTCAGAGAGG+GGG | - | chr1_3:52774390-52774409 | None:intergenic | 45.0% | |
GCTTGTGTTGAGATTCAGAG+AGG | - | chr1_3:52774393-52774412 | None:intergenic | 45.0% | |
AATGGCCAAAACAGCATCAC+AGG | + | chr1_3:52774736-52774755 | Msa0124910:CDS | 45.0% | |
ACAGGTATCTTCCAATGCAG+AGG | + | chr1_3:52774754-52774773 | Msa0124910:CDS | 45.0% | |
TTGTGAGATCTCCTCTGCAT+TGG | - | chr1_3:52774768-52774787 | None:intergenic | 45.0% | |
AAGCTGAACTCTTGCAGAGA+TGG | - | chr1_3:52774854-52774873 | None:intergenic | 45.0% | |
TCTGCAAGAGTTCAGCTTTC+AGG | + | chr1_3:52774856-52774875 | Msa0124910:CDS | 45.0% | |
AGGTTGTTACATGCTGTACG+AGG | + | chr1_3:52774876-52774895 | Msa0124910:CDS | 45.0% | |
!!! | GCTGGTTTTCCACAAGTTTC+AGG | + | chr1_3:52774901-52774920 | Msa0124910:CDS | 45.0% |
ATCTGCATCCCTGAAACTTG+TGG | - | chr1_3:52774913-52774932 | None:intergenic | 45.0% | |
TGTGGAACAACAAATGCTGC+TGG | + | chr1_3:52774946-52774965 | Msa0124910:CDS | 45.0% | |
ACAACAAATGCTGCTGGAAG+AGG | + | chr1_3:52774952-52774971 | Msa0124910:CDS | 45.0% | |
CAACAAATGCTGCTGGAAGA+GGG | + | chr1_3:52774953-52774972 | Msa0124910:CDS | 45.0% | |
!! | TATGTGATGGGTCAGTGTGA+GGG | + | chr1_3:52775066-52775085 | Msa0124910:CDS | 45.0% |
GATGAAGAATGACCACCCTT+TGG | - | chr1_3:52775231-52775250 | None:intergenic | 45.0% | |
AAGGGTGGTCATTCTTCATC+TGG | + | chr1_3:52775231-52775250 | Msa0124910:CDS | 45.0% | |
! | CAAGTTGACACTGATGCATG+TGG | - | chr1_3:52775491-52775510 | None:intergenic | 45.0% |
TGTCTGACACCAACACATGT+CGG | + | chr1_3:52775525-52775544 | Msa0124910:intron | 45.0% | |
TGTATGTGTCCGACATGTGT+TGG | - | chr1_3:52775537-52775556 | None:intergenic | 45.0% | |
ACACATGTCGGACACATACA+CGG | + | chr1_3:52775537-52775556 | Msa0124910:intron | 45.0% | |
! | ATTAGGAGGTATAGCTGCTG+TGG | + | chr1_3:52775801-52775820 | Msa0124910:CDS | 45.0% |
! | TATAGCTGCTGTGGCGTTTT+TGG | + | chr1_3:52775810-52775829 | Msa0124910:CDS | 45.0% |
! | GGTAGGTGTTGTGTTGTACA+TGG | + | chr1_3:52775877-52775896 | Msa0124910:intron | 45.0% |
TGGAGGCCAAATTCTTCTTG+AGG | + | chr1_3:52776036-52776055 | Msa0124910:CDS | 45.0% | |
AGGCCAAATTCTTCTTGAGG+TGG | + | chr1_3:52776039-52776058 | Msa0124910:exon | 45.0% | |
!!! | GCTCTCTCTTCTTCTGGTTT+TGG | - | chr1_3:52774239-52774258 | None:intergenic | 45.0% |
TGCATTGCTCTCTCTTCTTC+TGG | - | chr1_3:52774245-52774264 | None:intergenic | 45.0% | |
TGTGTTGAGATTCAGAGAGG+GGG | - | chr1_3:52774390-52774409 | None:intergenic | 45.0% | |
GCTTGTGTTGAGATTCAGAG+AGG | - | chr1_3:52774393-52774412 | None:intergenic | 45.0% | |
AATGGCCAAAACAGCATCAC+AGG | + | chr1_3:52774736-52774755 | Msa0124910:CDS | 45.0% | |
ACAGGTATCTTCCAATGCAG+AGG | + | chr1_3:52774754-52774773 | Msa0124910:CDS | 45.0% | |
TTGTGAGATCTCCTCTGCAT+TGG | - | chr1_3:52774768-52774787 | None:intergenic | 45.0% | |
AAGCTGAACTCTTGCAGAGA+TGG | - | chr1_3:52774854-52774873 | None:intergenic | 45.0% | |
TCTGCAAGAGTTCAGCTTTC+AGG | + | chr1_3:52774856-52774875 | Msa0124910:CDS | 45.0% | |
AGGTTGTTACATGCTGTACG+AGG | + | chr1_3:52774876-52774895 | Msa0124910:CDS | 45.0% | |
!!! | GCTGGTTTTCCACAAGTTTC+AGG | + | chr1_3:52774901-52774920 | Msa0124910:CDS | 45.0% |
ATCTGCATCCCTGAAACTTG+TGG | - | chr1_3:52774913-52774932 | None:intergenic | 45.0% | |
TGTGGAACAACAAATGCTGC+TGG | + | chr1_3:52774946-52774965 | Msa0124910:CDS | 45.0% | |
ACAACAAATGCTGCTGGAAG+AGG | + | chr1_3:52774952-52774971 | Msa0124910:CDS | 45.0% | |
CAACAAATGCTGCTGGAAGA+GGG | + | chr1_3:52774953-52774972 | Msa0124910:CDS | 45.0% | |
!! | TATGTGATGGGTCAGTGTGA+GGG | + | chr1_3:52775066-52775085 | Msa0124910:CDS | 45.0% |
GATGAAGAATGACCACCCTT+TGG | - | chr1_3:52775231-52775250 | None:intergenic | 45.0% | |
AAGGGTGGTCATTCTTCATC+TGG | + | chr1_3:52775231-52775250 | Msa0124910:CDS | 45.0% | |
! | CAAGTTGACACTGATGCATG+TGG | - | chr1_3:52775491-52775510 | None:intergenic | 45.0% |
TGTCTGACACCAACACATGT+CGG | + | chr1_3:52775525-52775544 | Msa0124910:intron | 45.0% | |
TGTATGTGTCCGACATGTGT+TGG | - | chr1_3:52775537-52775556 | None:intergenic | 45.0% | |
ACACATGTCGGACACATACA+CGG | + | chr1_3:52775537-52775556 | Msa0124910:intron | 45.0% | |
! | ATTAGGAGGTATAGCTGCTG+TGG | + | chr1_3:52775801-52775820 | Msa0124910:CDS | 45.0% |
! | TATAGCTGCTGTGGCGTTTT+TGG | + | chr1_3:52775810-52775829 | Msa0124910:CDS | 45.0% |
! | GGTAGGTGTTGTGTTGTACA+TGG | + | chr1_3:52775877-52775896 | Msa0124910:intron | 45.0% |
TGGAGGCCAAATTCTTCTTG+AGG | + | chr1_3:52776036-52776055 | Msa0124910:CDS | 45.0% | |
AGGCCAAATTCTTCTTGAGG+TGG | + | chr1_3:52776039-52776058 | Msa0124910:exon | 45.0% | |
TGTTGAGATTCAGAGAGGGG+GGG | - | chr1_3:52774388-52774407 | None:intergenic | 50.0% | |
GTGTTGAGATTCAGAGAGGG+GGG | - | chr1_3:52774389-52774408 | None:intergenic | 50.0% | |
TACATGCTGTACGAGGTTGC+TGG | + | chr1_3:52774883-52774902 | Msa0124910:CDS | 50.0% | |
!! | GTATGTGATGGGTCAGTGTG+AGG | + | chr1_3:52775065-52775084 | Msa0124910:CDS | 50.0% |
GGTGGTCATTCTTCATCTGG+TGG | + | chr1_3:52775234-52775253 | Msa0124910:CDS | 50.0% | |
GGTCATTCTTCATCTGGTGG+TGG | + | chr1_3:52775237-52775256 | Msa0124910:CDS | 50.0% | |
!! | GGTGGTGGATCATCTTCTTC+TGG | + | chr1_3:52775252-52775271 | Msa0124910:CDS | 50.0% |
TGTTGAGATTCAGAGAGGGG+GGG | - | chr1_3:52774388-52774407 | None:intergenic | 50.0% | |
GTGTTGAGATTCAGAGAGGG+GGG | - | chr1_3:52774389-52774408 | None:intergenic | 50.0% | |
TACATGCTGTACGAGGTTGC+TGG | + | chr1_3:52774883-52774902 | Msa0124910:CDS | 50.0% | |
!! | GTATGTGATGGGTCAGTGTG+AGG | + | chr1_3:52775065-52775084 | Msa0124910:CDS | 50.0% |
GGTGGTCATTCTTCATCTGG+TGG | + | chr1_3:52775234-52775253 | Msa0124910:CDS | 50.0% | |
GGTCATTCTTCATCTGGTGG+TGG | + | chr1_3:52775237-52775256 | Msa0124910:CDS | 50.0% | |
!! | GGTGGTGGATCATCTTCTTC+TGG | + | chr1_3:52775252-52775271 | Msa0124910:CDS | 50.0% |
TTGAGATTCAGAGAGGGGGG+GGG | - | chr1_3:52774386-52774405 | None:intergenic | 55.0% | |
GTTGAGATTCAGAGAGGGGG+GGG | - | chr1_3:52774387-52774406 | None:intergenic | 55.0% | |
GGTCAGTGTGAGGGTGATGT+TGG | + | chr1_3:52775075-52775094 | Msa0124910:CDS | 55.0% | |
!! | CCACCCTTTGGAACCCCATT+AGG | - | chr1_3:52775219-52775238 | None:intergenic | 55.0% |
CCTAATGGGGTTCCAAAGGG+TGG | + | chr1_3:52775216-52775235 | Msa0124910:CDS | 55.0% | |
TTGAGATTCAGAGAGGGGGG+GGG | - | chr1_3:52774386-52774405 | None:intergenic | 55.0% | |
GTTGAGATTCAGAGAGGGGG+GGG | - | chr1_3:52774387-52774406 | None:intergenic | 55.0% | |
GGTCAGTGTGAGGGTGATGT+TGG | + | chr1_3:52775075-52775094 | Msa0124910:CDS | 55.0% | |
!! | CCACCCTTTGGAACCCCATT+AGG | - | chr1_3:52775219-52775238 | None:intergenic | 55.0% |
CCTAATGGGGTTCCAAAGGG+TGG | + | chr1_3:52775216-52775235 | Msa0124910:CDS | 55.0% | |
AGAGGGGGGGGGACAGGTTA+AGG | - | chr1_3:52774375-52774394 | None:intergenic | 65.0% | |
ATTCAGAGAGGGGGGGGGAC+AGG | - | chr1_3:52774381-52774400 | None:intergenic | 65.0% | |
AGAGGGGGGGGGACAGGTTA+AGG | - | chr1_3:52774375-52774394 | None:intergenic | 65.0% | |
ATTCAGAGAGGGGGGGGGAC+AGG | - | chr1_3:52774381-52774400 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 52774205 | 52776309 | 52774205 | ID=Msa0124910;Name=Msa0124910 |
chr1_3 | mRNA | 52774205 | 52776309 | 52774205 | ID=Msa0124910-mRNA-1;Parent=Msa0124910;Name=Msa0124910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=303|0.5|0.66|1|1|1|3|253|316 |
chr1_3 | exon | 52774205 | 52775294 | 52774205 | ID=Msa0124910-mRNA-1:exon:16209;Parent=Msa0124910-mRNA-1 |
chr1_3 | exon | 52775770 | 52775881 | 52775770 | ID=Msa0124910-mRNA-1:exon:16210;Parent=Msa0124910-mRNA-1 |
chr1_3 | exon | 52776005 | 52776309 | 52776005 | ID=Msa0124910-mRNA-1:exon:16211;Parent=Msa0124910-mRNA-1 |
chr1_3 | five_prime_UTR | 52774205 | 52774507 | 52774205 | ID=Msa0124910-mRNA-1:five_prime_utr;Parent=Msa0124910-mRNA-1 |
chr1_3 | CDS | 52774508 | 52775294 | 52774508 | ID=Msa0124910-mRNA-1:cds;Parent=Msa0124910-mRNA-1 |
chr1_3 | CDS | 52775770 | 52775881 | 52775770 | ID=Msa0124910-mRNA-1:cds;Parent=Msa0124910-mRNA-1 |
chr1_3 | CDS | 52776005 | 52776056 | 52776005 | ID=Msa0124910-mRNA-1:cds;Parent=Msa0124910-mRNA-1 |
chr1_3 | three_prime_UTR | 52776057 | 52776309 | 52776057 | ID=Msa0124910-mRNA-1:three_prime_utr;Parent=Msa0124910-mRNA-1 |
Gene Sequence |
Protein sequence |