Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491150 | XP_003598516.1 | 97.015 | 335 | 4 | 2 | 1 | 335 | 1 | 329 | 0.0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491150 | sp|Q94CK9|LRP1_ARATH | 42.773 | 339 | 154 | 14 | 1 | 330 | 1 | 308 | 1.05e-58 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491150 | G7J0K6 | 97.015 | 335 | 4 | 2 | 1 | 335 | 1 | 329 | 0.0 | 666 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0491150 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0491150 | 0.806332 | 8.659816e-50 | -8.615850e-47 |
| Msa0017670 | Msa0491150 | 0.802186 | 6.321216e-49 | -8.615850e-47 |
| Msa0077340 | Msa0491150 | 0.801852 | 7.403097e-49 | -8.615850e-47 |
| Msa0098040 | Msa0491150 | 0.806013 | 1.010810e-49 | -8.615850e-47 |
| Msa0436910 | Msa0491150 | 0.802578 | 5.250244e-49 | -8.615850e-47 |
| Msa0321620 | Msa0491150 | 0.812949 | 3.276907e-51 | -8.615850e-47 |
| Msa0491150 | Msa0519750 | 0.818604 | 1.797125e-52 | -8.615850e-47 |
| Msa0491150 | Msa0519820 | 0.801957 | 7.046258e-49 | -8.615850e-47 |
| Msa0491150 | Msa0519830 | 0.806734 | 7.124791e-50 | -8.615850e-47 |
| Msa0491150 | Msa0529030 | 0.810920 | 9.069163e-51 | -8.615850e-47 |
| Msa0491150 | Msa0674480 | 0.823311 | 1.483356e-53 | -8.615850e-47 |
| Msa0491150 | Msa0826950 | 0.801539 | 8.584905e-49 | -8.615850e-47 |
| Msa0491150 | Msa0829330 | 0.800623 | 1.321436e-48 | -8.615850e-47 |
| Msa0491150 | Msa1105640 | 0.812467 | 4.178549e-51 | -8.615850e-47 |
| Msa0491150 | Msa1265650 | 0.808604 | 2.854225e-50 | -8.615850e-47 |
| Msa0491150 | Msa1303560 | 0.814546 | 1.457818e-51 | -8.615850e-47 |
| Msa0491150 | Msa1303650 | 0.815290 | 9.973362e-52 | -8.615850e-47 |
| Msa0491150 | Msa1405460 | 0.809762 | 1.611588e-50 | -8.615850e-47 |
| Msa0491150 | Msa1427100 | 0.807515 | 4.868932e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491150 | MtrunA17_Chr3g0082511 | 97.015 | 335 | 4 | 2 | 1 | 335 | 1 | 329 | 0.0 | 666 |
| Msa0491150 | MtrunA17_Chr8g0353111 | 60.231 | 347 | 104 | 14 | 1 | 334 | 1 | 326 | 2.96e-118 | 344 |
| Msa0491150 | MtrunA17_Chr5g0441921 | 41.241 | 274 | 139 | 4 | 45 | 307 | 29 | 291 | 1.12e-56 | 187 |
| Msa0491150 | MtrunA17_Chr8g0372461 | 41.509 | 159 | 63 | 5 | 135 | 292 | 121 | 250 | 1.94e-32 | 123 |
| Msa0491150 | MtrunA17_Chr1g0155791 | 39.521 | 167 | 87 | 3 | 135 | 300 | 122 | 275 | 6.61e-31 | 119 |
| Msa0491150 | MtrunA17_Chr5g0404781 | 42.073 | 164 | 81 | 3 | 135 | 294 | 100 | 253 | 4.89e-30 | 116 |
| Msa0491150 | MtrunA17_Chr3g0142171 | 39.752 | 161 | 74 | 6 | 135 | 292 | 86 | 226 | 2.53e-27 | 108 |
| Msa0491150 | MtrunA17_Chr4g0035591 | 35.000 | 160 | 67 | 4 | 135 | 294 | 20 | 142 | 1.00e-22 | 94.0 |
| Msa0491150 | MtrunA17_Chr0c01g0489181 | 57.143 | 35 | 15 | 0 | 135 | 169 | 67 | 101 | 6.17e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491150 | AT5G12330.1 | 42.773 | 339 | 154 | 14 | 1 | 330 | 1 | 308 | 1.07e-59 | 194 |
| Msa0491150 | AT5G12330.2 | 42.773 | 339 | 154 | 14 | 1 | 330 | 1 | 308 | 1.07e-59 | 194 |
| Msa0491150 | AT5G12330.4 | 42.773 | 339 | 154 | 14 | 1 | 330 | 88 | 395 | 2.50e-59 | 196 |
| Msa0491150 | AT3G54430.1 | 44.809 | 183 | 69 | 4 | 123 | 304 | 31 | 182 | 5.62e-43 | 147 |
| Msa0491150 | AT3G51060.1 | 43.949 | 157 | 69 | 4 | 135 | 290 | 144 | 282 | 8.47e-35 | 130 |
| Msa0491150 | AT5G66350.3 | 42.138 | 159 | 73 | 3 | 135 | 292 | 120 | 260 | 1.15e-33 | 127 |
| Msa0491150 | AT5G66350.2 | 42.138 | 159 | 73 | 3 | 135 | 292 | 120 | 260 | 1.49e-33 | 126 |
| Msa0491150 | AT5G66350.1 | 42.138 | 159 | 73 | 3 | 135 | 292 | 120 | 260 | 1.92e-33 | 126 |
| Msa0491150 | AT1G75520.1 | 38.750 | 160 | 94 | 2 | 135 | 292 | 125 | 282 | 7.16e-32 | 122 |
| Msa0491150 | AT1G19790.2 | 36.612 | 183 | 59 | 3 | 135 | 292 | 119 | 269 | 1.12e-31 | 122 |
| Msa0491150 | AT1G19790.1 | 36.612 | 183 | 59 | 3 | 135 | 292 | 119 | 269 | 1.12e-31 | 122 |
| Msa0491150 | AT4G36260.1 | 38.650 | 163 | 83 | 4 | 135 | 292 | 94 | 244 | 1.06e-29 | 116 |
| Msa0491150 | AT2G21400.2 | 36.646 | 161 | 74 | 3 | 133 | 293 | 8 | 140 | 3.71e-29 | 111 |
| Msa0491150 | AT2G21400.4 | 36.646 | 161 | 74 | 3 | 133 | 293 | 7 | 139 | 3.77e-29 | 111 |
| Msa0491150 | AT2G18120.2 | 38.272 | 162 | 73 | 3 | 135 | 296 | 72 | 206 | 2.26e-28 | 110 |
| Msa0491150 | AT2G18120.1 | 38.182 | 165 | 71 | 4 | 135 | 296 | 72 | 208 | 3.95e-28 | 109 |
| Msa0491150 | AT2G21400.3 | 37.267 | 161 | 58 | 3 | 133 | 293 | 8 | 125 | 7.37e-28 | 107 |
| Msa0491150 | AT2G21400.1 | 37.267 | 161 | 58 | 3 | 133 | 293 | 7 | 124 | 7.64e-28 | 107 |
| Msa0491150 | AT5G12330.3 | 39.184 | 245 | 111 | 12 | 1 | 238 | 1 | 214 | 3.21e-27 | 107 |
| Msa0491150 | AT5G33210.2 | 65.306 | 49 | 17 | 0 | 135 | 183 | 17 | 65 | 1.73e-18 | 80.1 |
| Msa0491150 | AT5G33210.1 | 50.617 | 81 | 39 | 1 | 104 | 183 | 20 | 100 | 1.01e-17 | 80.1 |
Find 101 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTTCTTGCACTAAATT+AGG | 0.079949 | 3_4:-13372935 | Msa0491150:three_prime_UTR |
| GCAGGGTAAACATTATTATT+TGG | 0.173024 | 3_4:+13375804 | None:intergenic |
| TTTACTCATGTCAATATTAA+TGG | 0.194404 | 3_4:-13372831 | Msa0491150:three_prime_UTR |
| ATGAAGATTGCTTGCTTATC+AGG | 0.196534 | 3_4:-13375766 | Msa0491150:intron |
| AAGTCTGCATGTAAGCAATT+AGG | 0.211194 | 3_4:+13372979 | None:intergenic |
| TGAAGATGAGTTTGCCTATT+TGG | 0.237838 | 3_4:-13375976 | Msa0491150:CDS |
| TACACAATTAAAGTGGAATA+TGG | 0.242949 | 3_4:+13373019 | None:intergenic |
| CATGCAGACTTAAAGCTTAA+TGG | 0.243890 | 3_4:-13372967 | Msa0491150:three_prime_UTR |
| GGTGATGGTGAGGGTTGTTC+TGG | 0.272937 | 3_4:-13377075 | Msa0491150:CDS |
| AGTCTGCATGTAAGCAATTA+GGG | 0.280497 | 3_4:+13372980 | None:intergenic |
| AAATTTCTTGCACTAAATTA+GGG | 0.290430 | 3_4:-13372934 | Msa0491150:three_prime_UTR |
| TTTGTCAAGATTGTGGTAAT+AGG | 0.301923 | 3_4:-13377251 | Msa0491150:CDS |
| TCTGGTGTTAAGAGACAAAA+AGG | 0.305575 | 3_4:-13377057 | Msa0491150:CDS |
| TCTTTGCTGGTTCATGAAAC+TGG | 0.307985 | 3_4:+13373080 | None:intergenic |
| AATATGAACTGTGGCCAAAT+AGG | 0.325865 | 3_4:+13375962 | None:intergenic |
| TTTGGAAGATTCACTACTTC+AGG | 0.330560 | 3_4:+13377363 | None:intergenic |
| GCTTCCTTAAGTGTTGGTTT+TGG | 0.330750 | 3_4:-13377501 | Msa0491150:CDS |
| TTCATGCACCAGCTGTATTC+AGG | 0.332427 | 3_4:-13376028 | Msa0491150:CDS |
| ATAAAACGTCCATTCTTTGC+TGG | 0.349849 | 3_4:+13373067 | None:intergenic |
| CTCTATGATCATGGTGTTGA+TGG | 0.354571 | 3_4:-13375915 | Msa0491150:CDS |
| CATGTGAAATGGGTTGGTTT+TGG | 0.355416 | 3_4:+13377556 | None:intergenic |
| GCCGGTGGTGGCGGTGGTGG+TGG | 0.377133 | 3_4:-13377099 | Msa0491150:CDS |
| TTACTCATGTCAATATTAAT+GGG | 0.378509 | 3_4:-13372830 | Msa0491150:three_prime_UTR |
| CTATGAGAACTAGGTCTCTA+AGG | 0.379942 | 3_4:+13377637 | None:intergenic |
| GAGCTAGTAGCAAAACTCTT+TGG | 0.380098 | 3_4:+13376970 | None:intergenic |
| TTTGCCGGTGGTGGCGGTGG+TGG | 0.387583 | 3_4:-13377102 | Msa0491150:CDS |
| CGGGAGGTGGAGATGTTTGC+CGG | 0.390512 | 3_4:-13377117 | Msa0491150:CDS |
| AGAAGAGAATCATGGCAAAA+TGG | 0.391361 | 3_4:-13377322 | Msa0491150:CDS |
| TGAATTGTGATCATGTGAAA+TGG | 0.393792 | 3_4:+13377545 | None:intergenic |
| TTGGCCACAGTTCATATTAG+TGG | 0.395130 | 3_4:-13375957 | Msa0491150:CDS |
| GTGGAGATGTTTGCCGGTGG+TGG | 0.395261 | 3_4:-13377111 | Msa0491150:CDS |
| ATGTTTGCCGGTGGTGGCGG+TGG | 0.397062 | 3_4:-13377105 | Msa0491150:CDS |
| TGCCAATAGCAGTTACTCTA+TGG | 0.398017 | 3_4:+13376003 | None:intergenic |
| TTGTCAAGATTGTGGTAATA+GGG | 0.399150 | 3_4:-13377250 | Msa0491150:CDS |
| TTGTGTTTCAGAACTTCAAT+TGG | 0.409173 | 3_4:-13375877 | Msa0491150:CDS |
| TTCGACACGTCGTCGGGAAC+GGG | 0.417355 | 3_4:-13377136 | Msa0491150:CDS |
| GAGATGTTTGCCGGTGGTGG+CGG | 0.422066 | 3_4:-13377108 | Msa0491150:CDS |
| GGTGGTGGCGGTGGTGGTGG+TGG | 0.424492 | 3_4:-13377096 | Msa0491150:CDS |
| TGATAAGCAAGCAATCTTCA+TGG | 0.425436 | 3_4:+13375768 | None:intergenic |
| GTACTCATTTGAAGAGTACT+TGG | 0.429685 | 3_4:-13377164 | Msa0491150:CDS |
| ACCACCACCACCGCCACCAC+CGG | 0.430921 | 3_4:+13377098 | None:intergenic |
| AAGATGTAGGACTTGTTGTA+AGG | 0.436244 | 3_4:-13377205 | Msa0491150:CDS |
| TGGTGGTGGTGGTGATGGTG+AGG | 0.439127 | 3_4:-13377085 | Msa0491150:CDS |
| GAATTGTGATCATGTGAAAT+GGG | 0.440257 | 3_4:+13377546 | None:intergenic |
| AAAGGGTTTCTCTATGATCA+TGG | 0.441459 | 3_4:-13375924 | Msa0491150:CDS |
| CATGGCTAGCTAGCAGAAGC+AGG | 0.449543 | 3_4:+13375786 | None:intergenic |
| TGCCATAGAGTAACTGCTAT+TGG | 0.452645 | 3_4:-13376005 | Msa0491150:CDS |
| GGTGAATGTTCTTCTGCAAT+TGG | 0.456180 | 3_4:-13375831 | Msa0491150:CDS |
| GGTTTCAAAGAGGGTTTACC+AGG | 0.457703 | 3_4:-13376056 | Msa0491150:CDS |
| TCTCATAGCTCTAACTCTAA+TGG | 0.458294 | 3_4:-13377000 | Msa0491150:CDS |
| TCATGGCAAAATGGCTATGA+TGG | 0.462755 | 3_4:-13377313 | Msa0491150:CDS |
| CCTGTTCCAATGAGTATGTT+AGG | 0.465756 | 3_4:-13377660 | None:intergenic |
| GATTCCTTCGACACGTCGTC+GGG | 0.466088 | 3_4:-13377142 | Msa0491150:CDS |
| GGTGGTGGTGGTGATGGTGA+GGG | 0.466432 | 3_4:-13377084 | Msa0491150:CDS |
| ACGTCGTCGGGAACGGGAGG+TGG | 0.470316 | 3_4:-13377130 | Msa0491150:CDS |
| AGTGCAAGAAATTTAACAAA+GGG | 0.473634 | 3_4:+13372943 | None:intergenic |
| AGTTCTGAAACACAAGGCAT+TGG | 0.476027 | 3_4:+13375885 | None:intergenic |
| CTAAGGCCTAACATACTCAT+TGG | 0.482929 | 3_4:+13377654 | None:intergenic |
| CAATTAAAGTGGAATATGGT+TGG | 0.483653 | 3_4:+13373023 | None:intergenic |
| AGTGAAGAAAATGGTGTGTA+TGG | 0.483753 | 3_4:-13377288 | Msa0491150:CDS |
| ATTAATTTACACAATTAAAG+TGG | 0.485072 | 3_4:+13373012 | None:intergenic |
| TCATCAGCTTCCTTAAGTGT+TGG | 0.492084 | 3_4:-13377507 | Msa0491150:CDS |
| TGTGTTTCAGAACTTCAATT+GGG | 0.498389 | 3_4:-13375876 | Msa0491150:CDS |
| CTACTTCAGGACACATCCTA+AGG | 0.507824 | 3_4:+13377376 | None:intergenic |
| TTTCATGAACCAGCAAAGAA+TGG | 0.508151 | 3_4:-13373076 | Msa0491150:three_prime_UTR |
| CTTCGACACGTCGTCGGGAA+CGG | 0.511061 | 3_4:-13377137 | Msa0491150:CDS |
| TAGGGATATTAATGTTGCAA+AGG | 0.511216 | 3_4:-13372916 | Msa0491150:three_prime_UTR |
| TATAGAGTTTGTCAAGATTG+TGG | 0.512497 | 3_4:-13377258 | Msa0491150:CDS |
| AATAATTGTAGTGGAAAGAA+TGG | 0.512653 | 3_4:-13375852 | Msa0491150:CDS |
| AATGCCAAAACCAACACTTA+AGG | 0.514002 | 3_4:+13377497 | None:intergenic |
| TGTTGTTGTTGTGGCATGCA+AGG | 0.524551 | 3_4:+13377453 | None:intergenic |
| TGTGATCATGTGAAATGGGT+TGG | 0.528257 | 3_4:+13377550 | None:intergenic |
| GTGATGGAGCTATGAGAACT+AGG | 0.539570 | 3_4:+13377628 | None:intergenic |
| ATGATGGAGAGTGAAGAAAA+TGG | 0.542008 | 3_4:-13377297 | Msa0491150:CDS |
| GGATTCCTTCGACACGTCGT+CGG | 0.554911 | 3_4:-13377143 | Msa0491150:CDS |
| GCAGATGCAGGTTTCAAAGA+GGG | 0.558109 | 3_4:-13376065 | Msa0491150:intron |
| ACACTTAAGGAAGCTGATGA+AGG | 0.561077 | 3_4:+13377510 | None:intergenic |
| CTATGGCACCTGAATACAGC+TGG | 0.563710 | 3_4:+13376020 | None:intergenic |
| ATCACTGAAGAAGAGAATCA+TGG | 0.572196 | 3_4:-13377330 | Msa0491150:CDS |
| AGAGTAACTGCTATTGGCAA+TGG | 0.579028 | 3_4:-13375999 | Msa0491150:CDS |
| CAATTGGGAAATAATTGTAG+TGG | 0.580003 | 3_4:-13375861 | Msa0491150:CDS |
| AGATGTAGGACTTGTTGTAA+GGG | 0.582676 | 3_4:-13377204 | Msa0491150:CDS |
| CGTTCCCGACGACGTGTCGA+AGG | 0.590725 | 3_4:+13377138 | None:intergenic |
| AGAGAAACCCTTTGAAAACA+TGG | 0.595856 | 3_4:+13375934 | None:intergenic |
| TGATGATGTTGAAGAGAAGA+AGG | 0.599517 | 3_4:+13377606 | None:intergenic |
| TCTATGATCATGGTGTTGAT+GGG | 0.608318 | 3_4:-13375914 | Msa0491150:CDS |
| CAAGGTGTAGCAGTGAGAAG+TGG | 0.610432 | 3_4:+13377471 | None:intergenic |
| AAGCTGATGAAGGTAAAGAG+TGG | 0.611531 | 3_4:+13377520 | None:intergenic |
| TAGTGCAAGAAATTTAACAA+AGG | 0.613319 | 3_4:+13372942 | None:intergenic |
| TGCAGATGCAGGTTTCAAAG+AGG | 0.617800 | 3_4:-13376066 | Msa0491150:intron |
| GCTACTAGCTCTTGTCACCA+AGG | 0.619674 | 3_4:-13376958 | Msa0491150:intron |
| TGTTGAAGAGAAGAAGGTGA+TGG | 0.622629 | 3_4:+13377612 | None:intergenic |
| GACACGTCGTCGGGAACGGG+AGG | 0.631647 | 3_4:-13377133 | Msa0491150:CDS |
| AGGACTTGTTGTAAGGGACG+TGG | 0.632558 | 3_4:-13377198 | Msa0491150:CDS |
| ATGGCTAGCTAGCAGAAGCA+GGG | 0.656680 | 3_4:+13375787 | None:intergenic |
| GTCTGCATGTAAGCAATTAG+GGG | 0.660451 | 3_4:+13372981 | None:intergenic |
| GTAAGCAATTAGGGGCTGCG+AGG | 0.682514 | 3_4:+13372989 | None:intergenic |
| GAGGTGGAGATGTTTGCCGG+TGG | 0.687056 | 3_4:-13377114 | Msa0491150:CDS |
| GCTGGTGCATGAACATGACC+TGG | 0.691114 | 3_4:+13376038 | None:intergenic |
| ATGGCCACTAATATGAACTG+TGG | 0.704516 | 3_4:+13375953 | None:intergenic |
| AATTGAAGTTCTGAAACACA+AGG | 0.729820 | 3_4:+13375879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTTTATATATAA+TGG | + | chr3_4:13374981-13375000 | None:intergenic | 0.0% |
| !! | ACATCAAATATAAAAAAAAA+AGG | + | chr3_4:13373860-13373879 | None:intergenic | 10.0% |
| !!! | TATATTTTTATATATAATGG+CGG | + | chr3_4:13374978-13374997 | None:intergenic | 10.0% |
| !! | TTTATAACACTAAAAAAATT+GGG | + | chr3_4:13376335-13376354 | None:intergenic | 10.0% |
| !! | ATTTATAACACTAAAAAAAT+TGG | + | chr3_4:13376336-13376355 | None:intergenic | 10.0% |
| !! | GTTTGAATTATAAAAATTAA+GGG | + | chr3_4:13376543-13376562 | None:intergenic | 10.0% |
| !! | TGTTTGAATTATAAAAATTA+AGG | + | chr3_4:13376544-13376563 | None:intergenic | 10.0% |
| !! | GAAAAAAAATGAAAAGAAAA+AGG | + | chr3_4:13373537-13373556 | None:intergenic | 15.0% |
| !! | TTTAAATGTTTAGATTGAAA+AGG | - | chr3_4:13373568-13373587 | Msa0491150:intron | 15.0% |
| !! | GATAATAAATTACATCAATT+TGG | + | chr3_4:13374258-13374277 | None:intergenic | 15.0% |
| !! | TGAAATTATTATAACTGAAA+AGG | - | chr3_4:13374343-13374362 | Msa0491150:intron | 15.0% |
| !!! | TTGATATTTAAAAGATTTTG+TGG | - | chr3_4:13374817-13374836 | Msa0491150:intron | 15.0% |
| !!! | ATATTTTTATATATAATGGC+GGG | + | chr3_4:13374977-13374996 | None:intergenic | 15.0% |
| !! | TGATTCTTTCAAATTATTAA+TGG | - | chr3_4:13375232-13375251 | Msa0491150:intron | 15.0% |
| !! | TTTCAAATTATTAATGGTAT+TGG | - | chr3_4:13375238-13375257 | Msa0491150:intron | 15.0% |
| !! | ACAATACAATTCAATTATTA+GGG | + | chr3_4:13375664-13375683 | None:intergenic | 15.0% |
| !! | AACAATACAATTCAATTATT+AGG | + | chr3_4:13375665-13375684 | None:intergenic | 15.0% |
| !! | TAATTAAAATGTGAAAGTTT+AGG | + | chr3_4:13376269-13376288 | None:intergenic | 15.0% |
| !! | TAAATTAAGCAAAATATGTT+AGG | + | chr3_4:13376893-13376912 | None:intergenic | 15.0% |
| !! | TTTATCATTGAATTTAATCA+TGG | - | chr3_4:13377168-13377187 | Msa0491150:CDS | 15.0% |
| !! | ATTAATTTACACAATTAAAG+TGG | + | chr3_4:13377449-13377468 | None:intergenic | 15.0% |
| !!! | CAAAAATTGTTATTGTTACT+AGG | + | chr3_4:13373059-13373078 | None:intergenic | 20.0% |
| !!! | CTAGTAACAATAACAATTTT+TGG | - | chr3_4:13373057-13373076 | Msa0491150:three_prime_UTR | 20.0% |
| !!! | AACATTATTTTGTTCATTGA+TGG | - | chr3_4:13373904-13373923 | Msa0491150:intron | 20.0% |
| !! | AAGTTAAAACATGAATTGTT+TGG | + | chr3_4:13373984-13374003 | None:intergenic | 20.0% |
| !! | ACTCTTATCATATCAATTTA+TGG | + | chr3_4:13374298-13374317 | None:intergenic | 20.0% |
| !! | TCAGTTATAATAATTTCATG+TGG | + | chr3_4:13374341-13374360 | None:intergenic | 20.0% |
| !! | TTTGAACAACATAACAATTA+TGG | + | chr3_4:13374760-13374779 | None:intergenic | 20.0% |
| !!! | TATTTTTATATATAATGGCG+GGG | + | chr3_4:13374976-13374995 | None:intergenic | 20.0% |
| !!! | TTTTTTCTGATATTCAAAGT+CGG | + | chr3_4:13375118-13375137 | None:intergenic | 20.0% |
| !! | AAACTAAAAAGTGAAAACTA+TGG | - | chr3_4:13375524-13375543 | Msa0491150:intron | 20.0% |
| !!! | TTGTATTGCAACAAATTTTT+TGG | - | chr3_4:13375593-13375612 | Msa0491150:intron | 20.0% |
| !!! | AATTTTTTCACTAATCTACA+AGG | + | chr3_4:13375814-13375833 | None:intergenic | 20.0% |
| !! | TAATATTATTGCACTTGTAA+AGG | - | chr3_4:13376054-13376073 | Msa0491150:CDS | 20.0% |
| !!! | ATTCCTACCTTTTTTTTTAA+TGG | + | chr3_4:13376151-13376170 | None:intergenic | 20.0% |
| !! | ATTAAAAAAAAAGGTAGGAA+TGG | - | chr3_4:13376150-13376169 | Msa0491150:intron | 20.0% |
| !!! | TGTGACATTTTGATATTTAA+AGG | - | chr3_4:13376359-13376378 | Msa0491150:intron | 20.0% |
| !!! | GTGACATTTTGATATTTAAA+GGG | - | chr3_4:13376360-13376379 | Msa0491150:intron | 20.0% |
| !!! | TGACATTTTGATATTTAAAG+GGG | - | chr3_4:13376361-13376380 | Msa0491150:intron | 20.0% |
| !! | CATCTCATTTATTTCAAATT+TGG | - | chr3_4:13376681-13376700 | Msa0491150:intron | 20.0% |
| !! | TAGACAATAAATAAATTGAG+AGG | + | chr3_4:13376783-13376802 | None:intergenic | 20.0% |
| !! | AAACAAATTGATGTTATGTT+AGG | + | chr3_4:13376833-13376852 | None:intergenic | 20.0% |
| !!! | GAAAGTAATGTTTTAAAAAC+CGG | - | chr3_4:13377048-13377067 | Msa0491150:CDS | 20.0% |
| !! | TACAAAAAGCAAAAAGTTTA+AGG | + | chr3_4:13377109-13377128 | None:intergenic | 20.0% |
| !!! | AATAGTGATTTTAACTTTGT+AGG | - | chr3_4:13377299-13377318 | Msa0491150:CDS | 20.0% |
| !! | TAAATTTCTTGCACTAAATT+AGG | - | chr3_4:13377523-13377542 | Msa0491150:CDS | 20.0% |
| !! | AAATTTCTTGCACTAAATTA+GGG | - | chr3_4:13377524-13377543 | Msa0491150:CDS | 20.0% |
| !! | TTTACTCATGTCAATATTAA+TGG | - | chr3_4:13377627-13377646 | Msa0491150:CDS | 20.0% |
| !! | TTACTCATGTCAATATTAAT+GGG | - | chr3_4:13377628-13377647 | Msa0491150:CDS | 20.0% |
| !!! | AATATTAATGGGACATTTTA+TGG | - | chr3_4:13377639-13377658 | Msa0491150:CDS | 20.0% |
| !!! | ATAACAATTTTTGGAACCTT+AGG | - | chr3_4:13373066-13373085 | Msa0491150:three_prime_UTR | 25.0% |
| !!! | ATTGTGTTTTTAGAAGATGT+AGG | - | chr3_4:13373240-13373259 | Msa0491150:intron | 25.0% |
| ! | AAGAGACAAAAAGGTTTATT+AGG | - | chr3_4:13373410-13373429 | Msa0491150:intron | 25.0% |
| ! | AGAGACAAAAAGGTTTATTA+GGG | - | chr3_4:13373411-13373430 | Msa0491150:intron | 25.0% |
| ! | GTTTAGATTGAAAAGGAATT+TGG | - | chr3_4:13373575-13373594 | Msa0491150:intron | 25.0% |
| ! | CATATTAGTATTGTATACAC+CGG | - | chr3_4:13373880-13373899 | Msa0491150:intron | 25.0% |
| ! | ATATTAGTATTGTATACACC+GGG | - | chr3_4:13373881-13373900 | Msa0491150:intron | 25.0% |
| ! | AATGAACAAAATAATGTTCC+CGG | + | chr3_4:13373902-13373921 | None:intergenic | 25.0% |
| !!! | TATTTTGTTCATTGATGGAT+TGG | - | chr3_4:13373909-13373928 | Msa0491150:intron | 25.0% |
| !!! | GTCAATTTGTCTTGTTTTAT+AGG | - | chr3_4:13374140-13374159 | Msa0491150:intron | 25.0% |
| !! | AATAATTGTAGTGGAAAGAA+TGG | - | chr3_4:13374606-13374625 | Msa0491150:intron | 25.0% |
| !! | ACAAAAAAGTTTTTACTAGC+TGG | - | chr3_4:13375029-13375048 | Msa0491150:intron | 25.0% |
| !! | TTTTTCTGATATTCAAAGTC+GGG | + | chr3_4:13375117-13375136 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr3_4:13375207-13375226 | None:intergenic | 25.0% |
| !! | TACGTTTTACTGTACATTAT+TGG | + | chr3_4:13375480-13375499 | None:intergenic | 25.0% |
| ! | TAACCACTATAATAATGAGA+TGG | - | chr3_4:13375498-13375517 | Msa0491150:intron | 25.0% |
| ! | GGAATATTGGAGAAAAATAT+GGG | + | chr3_4:13375619-13375638 | None:intergenic | 25.0% |
| !! | TCTTGATTTTTGAATTGACA+TGG | - | chr3_4:13375761-13375780 | Msa0491150:intron | 25.0% |
| ! | TAGTAAAAGATGCAGTAAAA+AGG | + | chr3_4:13375975-13375994 | None:intergenic | 25.0% |
| !! | GTCACTTTAAAAATATCACT+TGG | - | chr3_4:13376110-13376129 | Msa0491150:intron | 25.0% |
| ! | AATATCACTTGGAAAATCAA+TGG | - | chr3_4:13376121-13376140 | Msa0491150:intron | 25.0% |
| ! | TGGACAACCATTAAAAAAAA+AGG | - | chr3_4:13376141-13376160 | Msa0491150:intron | 25.0% |
| ! | CAACCATTAAAAAAAAAGGT+AGG | - | chr3_4:13376145-13376164 | Msa0491150:intron | 25.0% |
| ! | ACTAATACACACTCATATAA+TGG | + | chr3_4:13376191-13376210 | None:intergenic | 25.0% |
| ! | ATACGAGATGTATAATTCTA+TGG | + | chr3_4:13376430-13376449 | None:intergenic | 25.0% |
| ! | ATTCAAACACTAGTAAACAT+AGG | - | chr3_4:13376555-13376574 | Msa0491150:intron | 25.0% |
| ! | AAACAAATGTTGCAGTTAAA+TGG | + | chr3_4:13376643-13376662 | None:intergenic | 25.0% |
| ! | TTCATTGCAAGAAACAATAA+TGG | + | chr3_4:13376739-13376758 | None:intergenic | 25.0% |
| !!! | GAAATATTTCCATTTTGACA+AGG | + | chr3_4:13376809-13376828 | None:intergenic | 25.0% |
| ! | CTCTCATTTCTTTAATCAAT+TGG | + | chr3_4:13377016-13377035 | None:intergenic | 25.0% |
| !! | AACTTTTGTATGCTAATTAC+AGG | - | chr3_4:13377347-13377366 | Msa0491150:CDS | 25.0% |
| ! | TACACAATTAAAGTGGAATA+TGG | + | chr3_4:13377442-13377461 | None:intergenic | 25.0% |
| ! | AGTGCAAGAAATTTAACAAA+GGG | + | chr3_4:13377518-13377537 | None:intergenic | 25.0% |
| ! | TAGTGCAAGAAATTTAACAA+AGG | + | chr3_4:13377519-13377538 | None:intergenic | 25.0% |
| !!! | GAGTAAAGTTTTTTTTGACT+GGG | + | chr3_4:13377614-13377633 | None:intergenic | 25.0% |
| !!! | TGAGTAAAGTTTTTTTTGAC+TGG | + | chr3_4:13377615-13377634 | None:intergenic | 25.0% |
| GAATTGTGATCATGTGAAAT+GGG | + | chr3_4:13372915-13372934 | None:intergenic | 30.0% | |
| TGAATTGTGATCATGTGAAA+TGG | + | chr3_4:13372916-13372935 | None:intergenic | 30.0% | |
| !! | TCTTGAACTTCATTGTTTTG+AGG | + | chr3_4:13373032-13373051 | None:intergenic | 30.0% |
| GTAGTGAATCTTCCAAAAAA+AGG | - | chr3_4:13373101-13373120 | Msa0491150:intron | 30.0% | |
| TATAGAGTTTGTCAAGATTG+TGG | - | chr3_4:13373200-13373219 | Msa0491150:intron | 30.0% | |
| TTTGTCAAGATTGTGGTAAT+AGG | - | chr3_4:13373207-13373226 | Msa0491150:intron | 30.0% | |
| TTGTCAAGATTGTGGTAATA+GGG | - | chr3_4:13373208-13373227 | Msa0491150:intron | 30.0% | |
| ACACATAGACTATACATGTT+TGG | + | chr3_4:13373661-13373680 | None:intergenic | 30.0% | |
| !!! | CTGCTTTTTGAAAATCAAGT+GGG | - | chr3_4:13373734-13373753 | Msa0491150:intron | 30.0% |
| GGTTAATGGTCAAATATAGT+AGG | + | chr3_4:13373810-13373829 | None:intergenic | 30.0% | |
| ! | TTAGTATTTTCTCCTTCATC+AGG | - | chr3_4:13374189-13374208 | Msa0491150:intron | 30.0% |
| ! | TAGTATTTTCTCCTTCATCA+GGG | - | chr3_4:13374190-13374209 | Msa0491150:intron | 30.0% |
| !! | GTTTTGAGCTAAGGTTATAA+AGG | + | chr3_4:13374229-13374248 | None:intergenic | 30.0% |
| GAGTAATTTGAGTGTAATTG+AGG | - | chr3_4:13374314-13374333 | Msa0491150:intron | 30.0% | |
| !! | AATTGAAGTTCTGAAACACA+AGG | + | chr3_4:13374582-13374601 | None:intergenic | 30.0% |
| TTGTGTTTCAGAACTTCAAT+TGG | - | chr3_4:13374581-13374600 | Msa0491150:intron | 30.0% | |
| TGTGTTTCAGAACTTCAATT+GGG | - | chr3_4:13374582-13374601 | Msa0491150:intron | 30.0% | |
| CAATTGGGAAATAATTGTAG+TGG | - | chr3_4:13374597-13374616 | Msa0491150:intron | 30.0% | |
| GCAGGGTAAACATTATTATT+TGG | + | chr3_4:13374657-13374676 | None:intergenic | 30.0% | |
| ! | AAAGTTTTTACTAGCTGGAT+AGG | - | chr3_4:13375034-13375053 | Msa0491150:intron | 30.0% |
| ! | TTTTCTGATATTCAAAGTCG+GGG | + | chr3_4:13375116-13375135 | None:intergenic | 30.0% |
| TACTGTACATTATTGGTACA+CGG | + | chr3_4:13375473-13375492 | None:intergenic | 30.0% | |
| CTACCATCTCATTATTATAG+TGG | + | chr3_4:13375504-13375523 | None:intergenic | 30.0% | |
| GGGAATATTGGAGAAAAATA+TGG | + | chr3_4:13375620-13375639 | None:intergenic | 30.0% | |
| TTTGCTTTACAATAAACAGC+TGG | + | chr3_4:13375839-13375858 | None:intergenic | 30.0% | |
| AAAAGCTTAGACATTTGAGA+TGG | - | chr3_4:13375856-13375875 | Msa0491150:CDS | 30.0% | |
| ATTATTGCACTTGTAAAGGA+AGG | - | chr3_4:13376058-13376077 | Msa0491150:CDS | 30.0% | |
| TTATTGCACTTGTAAAGGAA+GGG | - | chr3_4:13376059-13376078 | Msa0491150:CDS | 30.0% | |
| ACACTGATGACAGAATATTA+GGG | + | chr3_4:13376227-13376246 | None:intergenic | 30.0% | |
| TAATGAACTGCTTAGTATAG+AGG | - | chr3_4:13376287-13376306 | Msa0491150:intron | 30.0% | |
| TAACTGCAACATTTGTTTGA+TGG | - | chr3_4:13376645-13376664 | Msa0491150:intron | 30.0% | |
| AACTGCAACATTTGTTTGAT+GGG | - | chr3_4:13376646-13376665 | Msa0491150:intron | 30.0% | |
| TGTCTATTACCTTGTCAAAA+TGG | - | chr3_4:13376797-13376816 | Msa0491150:intron | 30.0% | |
| TTTCATTCTTGCAACAACTA+TGG | + | chr3_4:13376951-13376970 | None:intergenic | 30.0% | |
| TGAATGAAATGAGAAGAGTT+AGG | - | chr3_4:13377266-13377285 | Msa0491150:CDS | 30.0% | |
| CAATTAAAGTGGAATATGGT+TGG | + | chr3_4:13377438-13377457 | None:intergenic | 30.0% | |
| TAGGGATATTAATGTTGCAA+AGG | - | chr3_4:13377542-13377561 | Msa0491150:CDS | 30.0% | |
| ! | TGATGATGTTGAAGAGAAGA+AGG | + | chr3_4:13372855-13372874 | None:intergenic | 35.0% |
| !!! | GTTGGTTTTGGTTTTGGTTT+TGG | + | chr3_4:13372893-13372912 | None:intergenic | 35.0% |
| !!! | AAATGGGTTGGTTTTGGTTT+TGG | + | chr3_4:13372899-13372918 | None:intergenic | 35.0% |
| AATGCCAAAACCAACACTTA+AGG | + | chr3_4:13372964-13372983 | None:intergenic | 35.0% | |
| !!! | TTTTGAGGTTGTTGTTGTTG+TGG | + | chr3_4:13373017-13373036 | None:intergenic | 35.0% |
| TTTGGAAGATTCACTACTTC+AGG | + | chr3_4:13373098-13373117 | None:intergenic | 35.0% | |
| !!! | TCAGTGATCACTCCTTTTTT+TGG | + | chr3_4:13373116-13373135 | None:intergenic | 35.0% |
| ATCACTGAAGAAGAGAATCA+TGG | - | chr3_4:13373128-13373147 | Msa0491150:intron | 35.0% | |
| AGAAGAGAATCATGGCAAAA+TGG | - | chr3_4:13373136-13373155 | Msa0491150:intron | 35.0% | |
| ! | ATGATGGAGAGTGAAGAAAA+TGG | - | chr3_4:13373161-13373180 | Msa0491150:intron | 35.0% |
| AGTGAAGAAAATGGTGTGTA+TGG | - | chr3_4:13373170-13373189 | Msa0491150:intron | 35.0% | |
| !! | AAGATGTAGGACTTGTTGTA+AGG | - | chr3_4:13373253-13373272 | Msa0491150:intron | 35.0% |
| !! | AGATGTAGGACTTGTTGTAA+GGG | - | chr3_4:13373254-13373273 | Msa0491150:intron | 35.0% |
| !! | GTACTCATTTGAAGAGTACT+TGG | - | chr3_4:13373294-13373313 | Msa0491150:intron | 35.0% |
| ! | TCTGGTGTTAAGAGACAAAA+AGG | - | chr3_4:13373401-13373420 | Msa0491150:intron | 35.0% |
| !! | TCTCATAGCTCTAACTCTAA+TGG | - | chr3_4:13373458-13373477 | Msa0491150:intron | 35.0% |
| !! | AAAAGGAAGTGAAAGTACCT+TGG | + | chr3_4:13373520-13373539 | None:intergenic | 35.0% |
| GTATAGTCTATGTGTATGTC+TGG | - | chr3_4:13373666-13373685 | Msa0491150:intron | 35.0% | |
| ! | CCACTTGATTTTCAAAAAGC+AGG | + | chr3_4:13373736-13373755 | None:intergenic | 35.0% |
| !!! | CCTGCTTTTTGAAAATCAAG+TGG | - | chr3_4:13373733-13373752 | Msa0491150:intron | 35.0% |
| AAAATGTTAACGAGTGTCAG+GGG | + | chr3_4:13373837-13373856 | None:intergenic | 35.0% | |
| GAAAATGTTAACGAGTGTCA+GGG | + | chr3_4:13373838-13373857 | None:intergenic | 35.0% | |
| CATTTATGCAATCATGCTGT+TGG | - | chr3_4:13373935-13373954 | Msa0491150:intron | 35.0% | |
| !!! | TGGATAGTTGTTTTGAGCTA+AGG | + | chr3_4:13374238-13374257 | None:intergenic | 35.0% |
| TGAAGATGAGTTTGCCTATT+TGG | - | chr3_4:13374482-13374501 | Msa0491150:intron | 35.0% | |
| AATATGAACTGTGGCCAAAT+AGG | + | chr3_4:13374499-13374518 | None:intergenic | 35.0% | |
| ! | ATTAGTGGCCATGTTTTCAA+AGG | - | chr3_4:13374516-13374535 | Msa0491150:intron | 35.0% |
| ! | TTAGTGGCCATGTTTTCAAA+GGG | - | chr3_4:13374517-13374536 | Msa0491150:intron | 35.0% |
| ! | AGAGAAACCCTTTGAAAACA+TGG | + | chr3_4:13374527-13374546 | None:intergenic | 35.0% |
| AAAGGGTTTCTCTATGATCA+TGG | - | chr3_4:13374534-13374553 | Msa0491150:intron | 35.0% | |
| !! | TCTATGATCATGGTGTTGAT+GGG | - | chr3_4:13374544-13374563 | Msa0491150:intron | 35.0% |
| TGATAAGCAAGCAATCTTCA+TGG | + | chr3_4:13374693-13374712 | None:intergenic | 35.0% | |
| ATGAAGATTGCTTGCTTATC+AGG | - | chr3_4:13374692-13374711 | Msa0491150:intron | 35.0% | |
| AAAATGTTAGCTCGTAGGTA+TGG | - | chr3_4:13374841-13374860 | Msa0491150:intron | 35.0% | |
| !! | TTTTATATATAATGGCGGGG+CGG | + | chr3_4:13374973-13374992 | None:intergenic | 35.0% |
| ! | TTTTACTAGCTGGATAGGTT+TGG | - | chr3_4:13375039-13375058 | Msa0491150:intron | 35.0% |
| TTTACTAGCTGGATAGGTTT+GGG | - | chr3_4:13375040-13375059 | Msa0491150:intron | 35.0% | |
| CAGAAAAAAGCTATGAAGCA+TGG | - | chr3_4:13375129-13375148 | Msa0491150:intron | 35.0% | |
| TCAATTTCAACTACATGCTC+AGG | - | chr3_4:13375323-13375342 | Msa0491150:intron | 35.0% | |
| GTTCAACAAGGTATGACAAT+GGG | + | chr3_4:13375397-13375416 | None:intergenic | 35.0% | |
| TGTTCAACAAGGTATGACAA+TGG | + | chr3_4:13375398-13375417 | None:intergenic | 35.0% | |
| AAGATGTGCAATGTTCAACA+AGG | + | chr3_4:13375409-13375428 | None:intergenic | 35.0% | |
| ACTGTACATTATTGGTACAC+GGG | + | chr3_4:13375472-13375491 | None:intergenic | 35.0% | |
| TGTTGCAATACAAAGTTGTG+AGG | + | chr3_4:13375586-13375605 | None:intergenic | 35.0% | |
| ! | TTGACATGGCTTTTCTTGTT+TGG | - | chr3_4:13375775-13375794 | Msa0491150:exon | 35.0% |
| GTATCATTGTCATCAAGTGT+TGG | - | chr3_4:13375878-13375897 | Msa0491150:CDS | 35.0% | |
| AGGGTAAAAGAACAGTTTAG+AGG | - | chr3_4:13376078-13376097 | Msa0491150:intron | 35.0% | |
| GGGTAAAAGAACAGTTTAGA+GGG | - | chr3_4:13376079-13376098 | Msa0491150:intron | 35.0% | |
| GGTAAAAGAACAGTTTAGAG+GGG | - | chr3_4:13376080-13376099 | Msa0491150:intron | 35.0% | |
| TGACAGAATATTAGGGATAG+TGG | + | chr3_4:13376220-13376239 | None:intergenic | 35.0% | |
| CACACTGATGACAGAATATT+AGG | + | chr3_4:13376228-13376247 | None:intergenic | 35.0% | |
| AAATGTGAAAGTTTAGGCTG+TGG | + | chr3_4:13376263-13376282 | None:intergenic | 35.0% | |
| !!! | CTAGTAGTAGCTTTTTTGTG+GGG | + | chr3_4:13376520-13376539 | None:intergenic | 35.0% |
| !!! | GCTAGTAGTAGCTTTTTTGT+GGG | + | chr3_4:13376521-13376540 | None:intergenic | 35.0% |
| ACACTAGTAAACATAGGACT+AGG | - | chr3_4:13376561-13376580 | Msa0491150:intron | 35.0% | |
| TAGTAAACATAGGACTAGGA+AGG | - | chr3_4:13376565-13376584 | Msa0491150:intron | 35.0% | |
| TTCATCAAACACATCTACCT+TGG | - | chr3_4:13376599-13376618 | Msa0491150:intron | 35.0% | |
| ! | CTTTCAGGTCATTATTCGAT+TGG | + | chr3_4:13377208-13377227 | None:intergenic | 35.0% |
| !!! | AGCTTCGTCGGTTTAATTTT+TGG | - | chr3_4:13377226-13377245 | Msa0491150:CDS | 35.0% |
| TAACTTTGTAGGTGACTTTG+AGG | - | chr3_4:13377310-13377329 | Msa0491150:CDS | 35.0% | |
| TGTATGCTAATTACAGGTGA+TGG | - | chr3_4:13377353-13377372 | Msa0491150:CDS | 35.0% | |
| TTTCATGAACCAGCAAAGAA+TGG | - | chr3_4:13377382-13377401 | Msa0491150:CDS | 35.0% | |
| ATAAAACGTCCATTCTTTGC+TGG | + | chr3_4:13377394-13377413 | None:intergenic | 35.0% | |
| !!! | GGTTGGTTTTCTCAACAAAA+CGG | + | chr3_4:13377421-13377440 | None:intergenic | 35.0% |
| AGTCTGCATGTAAGCAATTA+GGG | + | chr3_4:13377481-13377500 | None:intergenic | 35.0% | |
| AAGTCTGCATGTAAGCAATT+AGG | + | chr3_4:13377482-13377501 | None:intergenic | 35.0% | |
| CATGCAGACTTAAAGCTTAA+TGG | - | chr3_4:13377491-13377510 | Msa0491150:CDS | 35.0% | |
| CTATGAGAACTAGGTCTCTA+AGG | + | chr3_4:13372824-13372843 | None:intergenic | 40.0% | |
| TGTTGAAGAGAAGAAGGTGA+TGG | + | chr3_4:13372849-13372868 | None:intergenic | 40.0% | |
| !!! | CATGTGAAATGGGTTGGTTT+TGG | + | chr3_4:13372905-13372924 | None:intergenic | 40.0% |
| TGTGATCATGTGAAATGGGT+TGG | + | chr3_4:13372911-13372930 | None:intergenic | 40.0% | |
| AAGCTGATGAAGGTAAAGAG+TGG | + | chr3_4:13372941-13372960 | None:intergenic | 40.0% | |
| ACACTTAAGGAAGCTGATGA+AGG | + | chr3_4:13372951-13372970 | None:intergenic | 40.0% | |
| TCATCAGCTTCCTTAAGTGT+TGG | - | chr3_4:13372951-13372970 | Msa0491150:three_prime_UTR | 40.0% | |
| !!! | GCTTCCTTAAGTGTTGGTTT+TGG | - | chr3_4:13372957-13372976 | Msa0491150:three_prime_UTR | 40.0% |
| TCATGGCAAAATGGCTATGA+TGG | - | chr3_4:13373145-13373164 | Msa0491150:intron | 40.0% | |
| GAGCTAGTAGCAAAACTCTT+TGG | + | chr3_4:13373491-13373510 | None:intergenic | 40.0% | |
| GGAAAATGTTAACGAGTGTC+AGG | + | chr3_4:13373839-13373858 | None:intergenic | 40.0% | |
| CTAATGATCGAGAATCGTTG+CGG | + | chr3_4:13374104-13374123 | None:intergenic | 40.0% | |
| GAGCTAAGGTTATAAAGGAC+CGG | + | chr3_4:13374224-13374243 | None:intergenic | 40.0% | |
| TTCTGTTGAATTGCAGATGC+AGG | - | chr3_4:13374381-13374400 | Msa0491150:intron | 40.0% | |
| TGCCATAGAGTAACTGCTAT+TGG | - | chr3_4:13374453-13374472 | Msa0491150:intron | 40.0% | |
| TGCCAATAGCAGTTACTCTA+TGG | + | chr3_4:13374458-13374477 | None:intergenic | 40.0% | |
| AGAGTAACTGCTATTGGCAA+TGG | - | chr3_4:13374459-13374478 | Msa0491150:intron | 40.0% | |
| TTGGCCACAGTTCATATTAG+TGG | - | chr3_4:13374501-13374520 | Msa0491150:intron | 40.0% | |
| ATGGCCACTAATATGAACTG+TGG | + | chr3_4:13374508-13374527 | None:intergenic | 40.0% | |
| ! | CTCTATGATCATGGTGTTGA+TGG | - | chr3_4:13374543-13374562 | Msa0491150:intron | 40.0% |
| !! | AGTTCTGAAACACAAGGCAT+TGG | + | chr3_4:13374576-13374595 | None:intergenic | 40.0% |
| GGTGAATGTTCTTCTGCAAT+TGG | - | chr3_4:13374627-13374646 | Msa0491150:intron | 40.0% | |
| GTGGAAAAATGTTAGCTCGT+AGG | - | chr3_4:13374836-13374855 | Msa0491150:intron | 40.0% | |
| ! | ATCTATTTTCCGATCCGTCA+GGG | + | chr3_4:13374918-13374937 | None:intergenic | 40.0% |
| ! | TATCTATTTTCCGATCCGTC+AGG | + | chr3_4:13374919-13374938 | None:intergenic | 40.0% |
| ! | TTTATATATAATGGCGGGGC+GGG | + | chr3_4:13374972-13374991 | None:intergenic | 40.0% |
| TGATATTCAAAGTCGGGGAT+GGG | + | chr3_4:13375111-13375130 | None:intergenic | 40.0% | |
| ! | GAGTTTTCTCCTATGAAGCA+CGG | + | chr3_4:13375305-13375324 | None:intergenic | 40.0% |
| ! | GAGGGTACACTCAAATTTGA+TGG | + | chr3_4:13375363-13375382 | None:intergenic | 40.0% |
| AATGCATCACCTCACTTTGA+TGG | - | chr3_4:13375433-13375452 | Msa0491150:intron | 40.0% | |
| ATGCATCACCTCACTTTGAT+GGG | - | chr3_4:13375434-13375453 | Msa0491150:intron | 40.0% | |
| ACATTATTGGTACACGGGTT+TGG | + | chr3_4:13375467-13375486 | None:intergenic | 40.0% | |
| TAATAACATTGTGCATGGGG+GGG | + | chr3_4:13375640-13375659 | None:intergenic | 40.0% | |
| CTAATAACATTGTGCATGGG+GGG | + | chr3_4:13375641-13375660 | None:intergenic | 40.0% | |
| GCTAATAACATTGTGCATGG+GGG | + | chr3_4:13375642-13375661 | None:intergenic | 40.0% | |
| GGCTAATAACATTGTGCATG+GGG | + | chr3_4:13375643-13375662 | None:intergenic | 40.0% | |
| GGGCTAATAACATTGTGCAT+GGG | + | chr3_4:13375644-13375663 | None:intergenic | 40.0% | |
| AGGGCTAATAACATTGTGCA+TGG | + | chr3_4:13375645-13375664 | None:intergenic | 40.0% | |
| !!! | TAGTAGCTTTTTTGTGGGGA+GGG | + | chr3_4:13376516-13376535 | None:intergenic | 40.0% |
| !!! | GGCTAGTAGTAGCTTTTTTG+TGG | + | chr3_4:13376522-13376541 | None:intergenic | 40.0% |
| CAGTTAAATGGTGACAACCT+TGG | + | chr3_4:13376631-13376650 | None:intergenic | 40.0% | |
| TAATGACCTGAAAGCTTCGT+CGG | - | chr3_4:13377214-13377233 | Msa0491150:CDS | 40.0% | |
| ATTAAACCGACGAAGCTTTC+AGG | + | chr3_4:13377223-13377242 | None:intergenic | 40.0% | |
| !!! | CGTCGGTTTAATTTTTGGTC+TGG | - | chr3_4:13377231-13377250 | Msa0491150:CDS | 40.0% |
| !! | TCTTTGCTGGTTCATGAAAC+TGG | + | chr3_4:13377381-13377400 | None:intergenic | 40.0% |
| GTCTGCATGTAAGCAATTAG+GGG | + | chr3_4:13377480-13377499 | None:intergenic | 40.0% | |
| ! | GTGATGGAGCTATGAGAACT+AGG | + | chr3_4:13372833-13372852 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGTGGCATGCA+AGG | + | chr3_4:13373008-13373027 | None:intergenic | 45.0% |
| CTACTTCAGGACACATCCTA+AGG | + | chr3_4:13373085-13373104 | None:intergenic | 45.0% | |
| CTACAGCTTCTGCAAAATCG+CGG | + | chr3_4:13373702-13373721 | None:intergenic | 45.0% | |
| CTTCATCAGGGTTTGAACTC+CGG | - | chr3_4:13374202-13374221 | Msa0491150:intron | 45.0% | |
| TGCAGATGCAGGTTTCAAAG+AGG | - | chr3_4:13374392-13374411 | Msa0491150:intron | 45.0% | |
| GCAGATGCAGGTTTCAAAGA+GGG | - | chr3_4:13374393-13374412 | Msa0491150:intron | 45.0% | |
| GGTTTCAAAGAGGGTTTACC+AGG | - | chr3_4:13374402-13374421 | Msa0491150:intron | 45.0% | |
| TTCATGCACCAGCTGTATTC+AGG | - | chr3_4:13374430-13374449 | Msa0491150:intron | 45.0% | |
| TTAGCTCGTAGGTATGGCAA+CGG | - | chr3_4:13374847-13374866 | Msa0491150:intron | 45.0% | |
| ATATCCATCCTCACCTTCGA+TGG | - | chr3_4:13374936-13374955 | Msa0491150:intron | 45.0% | |
| GATATTCAAAGTCGGGGATG+GGG | + | chr3_4:13375110-13375129 | None:intergenic | 45.0% | |
| CTGATATTCAAAGTCGGGGA+TGG | + | chr3_4:13375112-13375131 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+TGG | - | chr3_4:13375140-13375159 | Msa0491150:intron | 45.0% | |
| !! | TATATGTGTCGGTGTCAGAC+AGG | + | chr3_4:13375196-13375215 | None:intergenic | 45.0% |
| !! | ACGGATATAGGCACCGATAT+CGG | + | chr3_4:13375286-13375305 | None:intergenic | 45.0% |
| TGCCTATATCCGTGCTTCAT+AGG | - | chr3_4:13375293-13375312 | Msa0491150:intron | 45.0% | |
| CTCCTATGAAGCACGGATAT+AGG | + | chr3_4:13375298-13375317 | None:intergenic | 45.0% | |
| GCAGAATTCCCATCAAAGTG+AGG | + | chr3_4:13375445-13375464 | None:intergenic | 45.0% | |
| ATGGTGTGATGTGAAGTGTG+TGG | - | chr3_4:13375543-13375562 | Msa0491150:intron | 45.0% | |
| TGATGTGAAGTGTGTGGTGT+GGG | - | chr3_4:13375549-13375568 | Msa0491150:intron | 45.0% | |
| GAAAGTTTAGGCTGTGGTTG+TGG | + | chr3_4:13376257-13376276 | None:intergenic | 45.0% | |
| !!! | AGTAGCTTTTTTGTGGGGAG+GGG | + | chr3_4:13376515-13376534 | None:intergenic | 45.0% |
| !!! | GTAGTAGCTTTTTTGTGGGG+AGG | + | chr3_4:13376517-13376536 | None:intergenic | 45.0% |
| ! | ATCTACCTTGGTGTAGACCA+AGG | - | chr3_4:13376611-13376630 | Msa0491150:intron | 45.0% |
| CACGTCTTGCACATAGATGA+AGG | - | chr3_4:13376858-13376877 | Msa0491150:intron | 45.0% | |
| CAAGGTGTAGCAGTGAGAAG+TGG | + | chr3_4:13372990-13373009 | None:intergenic | 50.0% | |
| !! | AGGACTTGTTGTAAGGGACG+TGG | - | chr3_4:13373260-13373279 | Msa0491150:intron | 50.0% |
| ! | GCTACTAGCTCTTGTCACCA+AGG | - | chr3_4:13373500-13373519 | Msa0491150:intron | 50.0% |
| CAGAAGCTGTAGAGTCTCGA+TGG | - | chr3_4:13373710-13373729 | Msa0491150:intron | 50.0% | |
| CGTGTGACTATGTGAATGCG+TGG | - | chr3_4:13374069-13374088 | Msa0491150:intron | 50.0% | |
| CGGAGTTCAAACCCTGATGA+AGG | + | chr3_4:13374204-13374223 | None:intergenic | 50.0% | |
| CTATGGCACCTGAATACAGC+TGG | + | chr3_4:13374441-13374460 | None:intergenic | 50.0% | |
| ! | ATGGCTAGCTAGCAGAAGCA+GGG | + | chr3_4:13374674-13374693 | None:intergenic | 50.0% |
| TAGCTCGTAGGTATGGCAAC+GGG | - | chr3_4:13374848-13374867 | Msa0491150:intron | 50.0% | |
| ! | TTTTCCGATCCGTCAGGGAT+CGG | + | chr3_4:13374913-13374932 | None:intergenic | 50.0% |
| ! | GCTGGATAGGTTTGGGTTTG+CGG | - | chr3_4:13375047-13375066 | Msa0491150:intron | 50.0% |
| ! | GATAGGTTTGGGTTTGCGGT+TGG | - | chr3_4:13375051-13375070 | Msa0491150:intron | 50.0% |
| ! | TTTGGGTTTGCGGTTGGAGT+AGG | - | chr3_4:13375057-13375076 | Msa0491150:intron | 50.0% |
| GCATGGACACTCCTTGGATT+AGG | - | chr3_4:13375146-13375165 | Msa0491150:intron | 50.0% | |
| ! | CTCCTTGGATTAGGCGTGTT+CGG | - | chr3_4:13375155-13375174 | Msa0491150:intron | 50.0% |
| ! | TCCTTGGATTAGGCGTGTTC+GGG | - | chr3_4:13375156-13375175 | Msa0491150:intron | 50.0% |
| ATCCGTGTCGTGTCCGATAT+CGG | - | chr3_4:13375270-13375289 | Msa0491150:intron | 50.0% | |
| TGAGTGTACCCTCAAGAGTG+TGG | - | chr3_4:13375370-13375389 | Msa0491150:intron | 50.0% | |
| ! | GAGTGTACCCTCAAGAGTGT+GGG | - | chr3_4:13375371-13375390 | Msa0491150:intron | 50.0% |
| GTGATGTGAAGTGTGTGGTG+TGG | - | chr3_4:13375548-13375567 | Msa0491150:intron | 50.0% | |
| TTGTGCATGGGGGGGAATAT+TGG | + | chr3_4:13375632-13375651 | None:intergenic | 50.0% | |
| GACAACCTTGGTCTACACCA+AGG | + | chr3_4:13376619-13376638 | None:intergenic | 50.0% | |
| ! | CAACCGTGAACTCGCTGATT+CGG | + | chr3_4:13377075-13377094 | None:intergenic | 50.0% |
| CAGCGAGTTCACGGTTGAAT+TGG | - | chr3_4:13377078-13377097 | Msa0491150:CDS | 50.0% | |
| GGATTCCTTCGACACGTCGT+CGG | - | chr3_4:13373315-13373334 | Msa0491150:intron | 55.0% | |
| GATTCCTTCGACACGTCGTC+GGG | - | chr3_4:13373316-13373335 | Msa0491150:intron | 55.0% | |
| ! | GGTGATGGTGAGGGTTGTTC+TGG | - | chr3_4:13373383-13373402 | Msa0491150:intron | 55.0% |
| !! | GTGTCAGGGGCACTGGTTAA+TGG | + | chr3_4:13373824-13373843 | None:intergenic | 55.0% |
| ! | TTAACGAGTGTCAGGGGCAC+TGG | + | chr3_4:13373831-13373850 | None:intergenic | 55.0% |
| GCTGGTGCATGAACATGACC+TGG | + | chr3_4:13374423-13374442 | None:intergenic | 55.0% | |
| ! | CATGGCTAGCTAGCAGAAGC+AGG | + | chr3_4:13374675-13374694 | None:intergenic | 55.0% |
| AGCTCGTAGGTATGGCAACG+GGG | - | chr3_4:13374849-13374868 | Msa0491150:intron | 55.0% | |
| TCCCTAGAACCGATCCCTGA+CGG | - | chr3_4:13374901-13374920 | Msa0491150:intron | 55.0% | |
| ! | TCCGTCAGGGATCGGTTCTA+GGG | + | chr3_4:13374905-13374924 | None:intergenic | 55.0% |
| ! | ATCCGTCAGGGATCGGTTCT+AGG | + | chr3_4:13374906-13374925 | None:intergenic | 55.0% |
| ! | AGAACCGATCCCTGACGGAT+CGG | - | chr3_4:13374906-13374925 | Msa0491150:intron | 55.0% |
| GACTCCATCGAAGGTGAGGA+TGG | + | chr3_4:13374943-13374962 | None:intergenic | 55.0% | |
| TCCTCACCTTCGATGGAGTC+AGG | - | chr3_4:13374943-13374962 | Msa0491150:intron | 55.0% | |
| ACCTGACTCCATCGAAGGTG+AGG | + | chr3_4:13374947-13374966 | None:intergenic | 55.0% | |
| GGGAAACCTGACTCCATCGA+AGG | + | chr3_4:13374952-13374971 | None:intergenic | 55.0% | |
| TCAAAGTCGGGGATGGGGAT+GGG | + | chr3_4:13375105-13375124 | None:intergenic | 55.0% | |
| TTCAAAGTCGGGGATGGGGA+TGG | + | chr3_4:13375106-13375125 | None:intergenic | 55.0% | |
| TCCCGAACACGCCTAATCCA+AGG | + | chr3_4:13375160-13375179 | None:intergenic | 55.0% | |
| CACCGATATCGGACACGACA+CGG | + | chr3_4:13375275-13375294 | None:intergenic | 55.0% | |
| CAATGGGCCCACACTCTTGA+GGG | + | chr3_4:13375381-13375400 | None:intergenic | 55.0% | |
| ACAATGGGCCCACACTCTTG+AGG | + | chr3_4:13375382-13375401 | None:intergenic | 55.0% | |
| !! | GTGAACTCGCTGATTCGGTC+CGG | + | chr3_4:13377070-13377089 | None:intergenic | 55.0% |
| GGACCGAATCAGCGAGTTCA+CGG | - | chr3_4:13377069-13377088 | Msa0491150:CDS | 55.0% | |
| GTAAGCAATTAGGGGCTGCG+AGG | + | chr3_4:13377472-13377491 | None:intergenic | 55.0% | |
| CTTCGACACGTCGTCGGGAA+CGG | - | chr3_4:13373321-13373340 | Msa0491150:intron | 60.0% | |
| TTCGACACGTCGTCGGGAAC+GGG | - | chr3_4:13373322-13373341 | Msa0491150:intron | 60.0% | |
| CGGGAGGTGGAGATGTTTGC+CGG | - | chr3_4:13373341-13373360 | Msa0491150:intron | 60.0% | |
| GAGGTGGAGATGTTTGCCGG+TGG | - | chr3_4:13373344-13373363 | Msa0491150:intron | 60.0% | |
| GTGGAGATGTTTGCCGGTGG+TGG | - | chr3_4:13373347-13373366 | Msa0491150:intron | 60.0% | |
| ! | GAGATGTTTGCCGGTGGTGG+CGG | - | chr3_4:13373350-13373369 | Msa0491150:intron | 60.0% |
| !! | TGGTGGTGGTGGTGATGGTG+AGG | - | chr3_4:13373373-13373392 | Msa0491150:intron | 60.0% |
| !! | GGTGGTGGTGGTGATGGTGA+GGG | - | chr3_4:13373374-13373393 | Msa0491150:intron | 60.0% |
| TCGTAGGTATGGCAACGGGG+TGG | - | chr3_4:13374852-13374871 | Msa0491150:intron | 60.0% | |
| GTATGGCAACGGGGTGGTCA+GGG | - | chr3_4:13374858-13374877 | Msa0491150:intron | 60.0% | |
| TATGGCAACGGGGTGGTCAG+GGG | - | chr3_4:13374859-13374878 | Msa0491150:intron | 60.0% | |
| !! | GGGATCGGTTCTAGGGAGGT+AGG | + | chr3_4:13374898-13374917 | None:intergenic | 60.0% |
| !! | GTCAGGGATCGGTTCTAGGG+AGG | + | chr3_4:13374902-13374921 | None:intergenic | 60.0% |
| GGGGATGGGGATGACGATGA+AGG | + | chr3_4:13375091-13375110 | None:intergenic | 60.0% | |
| CAAAGTCGGGGATGGGGATG+GGG | + | chr3_4:13375104-13375123 | None:intergenic | 60.0% | |
| CGTTCCCGACGACGTGTCGA+AGG | + | chr3_4:13373323-13373342 | None:intergenic | 65.0% | |
| !! | ATGTTTGCCGGTGGTGGCGG+TGG | - | chr3_4:13373353-13373372 | Msa0491150:intron | 65.0% |
| GGTATGGCAACGGGGTGGTC+AGG | - | chr3_4:13374857-13374876 | Msa0491150:intron | 65.0% | |
| GACACGTCGTCGGGAACGGG+AGG | - | chr3_4:13373325-13373344 | Msa0491150:intron | 70.0% | |
| ACGTCGTCGGGAACGGGAGG+TGG | - | chr3_4:13373328-13373347 | Msa0491150:intron | 70.0% | |
| !! | TTTGCCGGTGGTGGCGGTGG+TGG | - | chr3_4:13373356-13373375 | Msa0491150:intron | 70.0% |
| ACCACCACCACCGCCACCAC+CGG | + | chr3_4:13373363-13373382 | None:intergenic | 70.0% | |
| !! | GGCGGTGGTGGTGGTGGTGA+TGG | - | chr3_4:13373368-13373387 | Msa0491150:intron | 70.0% |
| !! | GGTGGTGGCGGTGGTGGTGG+TGG | - | chr3_4:13373362-13373381 | Msa0491150:intron | 75.0% |
| !!! | GCCGGTGGTGGCGGTGGTGG+TGG | - | chr3_4:13373359-13373378 | Msa0491150:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 13372807 | 13377673 | 13372807 | ID=Msa0491150;Name=Msa0491150 |
| chr3_4 | mRNA | 13372807 | 13377673 | 13372807 | ID=Msa0491150-mRNA-1;Parent=Msa0491150;Name=Msa0491150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|0.5|0.33|3|329|335 |
| chr3_4 | exon | 13372807 | 13373111 | 13372807 | ID=Msa0491150-mRNA-1:exon:4038;Parent=Msa0491150-mRNA-1 |
| chr3_4 | exon | 13375767 | 13376083 | 13375767 | ID=Msa0491150-mRNA-1:exon:4037;Parent=Msa0491150-mRNA-1 |
| chr3_4 | exon | 13376959 | 13377673 | 13376959 | ID=Msa0491150-mRNA-1:exon:4036;Parent=Msa0491150-mRNA-1 |
| chr3_4 | CDS | 13376959 | 13377673 | 13376959 | ID=Msa0491150-mRNA-1:cds;Parent=Msa0491150-mRNA-1 |
| chr3_4 | CDS | 13375791 | 13376083 | 13375791 | ID=Msa0491150-mRNA-1:cds;Parent=Msa0491150-mRNA-1 |
| chr3_4 | three_prime_UTR | 13375767 | 13375790 | 13375767 | ID=Msa0491150-mRNA-1:three_prime_utr;Parent=Msa0491150-mRNA-1 |
| chr3_4 | three_prime_UTR | 13372807 | 13373111 | 13372807 | ID=Msa0491150-mRNA-1:three_prime_utr;Parent=Msa0491150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
