AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0777460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777460 MtrunA17_Chr5g0432701 97.500 360 6 2 1 359 1 358 0.0 706
Msa0777460 MtrunA17_Chr3g0107491 69.855 345 66 5 50 359 36 377 3.53e-167 471
Msa0777460 MtrunA17_Chr3g0128781 52.215 316 132 8 52 359 7 311 3.02e-93 281
Msa0777460 MtrunA17_Chr2g0329551 52.157 255 69 9 52 259 72 320 1.27e-63 208
Msa0777460 MtrunA17_Chr6g0463571 52.227 247 86 9 27 253 10 244 4.06e-61 198
Msa0777460 MtrunA17_Chr4g0036071 73.684 114 30 0 145 258 345 458 1.60e-48 171
Msa0777460 MtrunA17_Chr1g0156051 53.165 158 64 2 125 272 342 499 2.90e-31 124
Msa0777460 MtrunA17_Chr2g0316551 51.064 94 46 0 159 252 207 300 3.70e-22 95.9
Msa0777460 MtrunA17_Chr2g0325131 50.538 93 46 0 160 252 191 283 4.48e-21 92.8
Msa0777460 MtrunA17_Chr4g0040891 48.387 93 48 0 160 252 194 286 2.40e-20 90.5
Msa0777460 MtrunA17_Chr1g0202051 41.818 110 62 2 145 253 109 217 3.47e-16 77.8
Msa0777460 MtrunA17_Chr8g0380611 40.426 94 51 1 159 252 233 321 3.53e-12 67.0
Msa0777460 MtrunA17_Chr2g0306581 55.172 58 26 0 148 205 1 58 6.84e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0777460 AT2G40620.1 50.620 403 104 16 12 359 5 367 2.74e-102 306
Msa0777460 AT1G06850.1 57.621 269 87 7 95 348 70 326 2.36e-87 267
Msa0777460 AT2G31370.5 46.474 312 105 12 24 278 14 320 9.23e-67 215
Msa0777460 AT2G31370.2 46.474 312 105 12 24 278 14 320 3.99e-66 214
Msa0777460 AT2G31370.4 46.474 312 105 12 24 278 14 320 3.99e-66 214
Msa0777460 AT2G31370.1 46.474 312 105 12 24 278 14 320 3.99e-66 214
Msa0777460 AT2G31370.7 46.474 312 105 12 24 278 14 320 3.99e-66 214
Msa0777460 AT2G31370.3 46.474 312 105 12 24 278 14 320 3.99e-66 214
Msa0777460 AT2G31370.6 46.474 312 105 12 24 278 14 320 3.99e-66 214
Msa0777460 AT1G06070.1 50.000 252 85 6 52 268 73 318 2.68e-60 200
Msa0777460 AT4G38900.2 67.626 139 35 2 129 257 353 491 4.01e-49 173
Msa0777460 AT4G38900.3 67.626 139 35 2 129 257 353 491 4.01e-49 173
Msa0777460 AT1G43700.1 61.935 155 45 4 118 258 138 292 3.16e-48 166
Msa0777460 AT4G38900.1 64.828 145 35 3 129 257 353 497 1.11e-46 167
Msa0777460 AT2G21230.4 60.870 138 45 1 129 257 330 467 5.55e-43 156
Msa0777460 AT2G21230.1 60.870 138 45 1 129 257 330 467 5.55e-43 156
Msa0777460 AT1G06850.2 62.963 135 35 3 95 215 70 203 6.74e-42 146
Msa0777460 AT2G21230.3 57.639 144 46 2 129 257 330 473 4.72e-40 148
Msa0777460 AT2G21230.2 71.875 96 27 0 145 240 355 450 1.08e-36 138
Msa0777460 AT3G58120.1 49.462 93 47 0 160 252 202 294 2.12e-21 94.0
Msa0777460 AT2G42380.2 48.936 94 48 0 159 252 185 278 3.83e-21 93.2
Msa0777460 AT2G12900.1 43.269 104 58 1 152 255 109 211 5.65e-21 91.7
Msa0777460 AT2G13150.1 37.037 135 75 2 129 254 110 243 3.50e-18 83.6
Msa0777460 AT2G12940.1 38.532 109 66 1 146 254 135 242 1.64e-17 82.4
Msa0777460 AT2G42380.5 46.988 83 44 0 159 241 185 267 3.94e-17 80.9
Msa0777460 AT3G58120.2 47.500 80 42 0 160 239 202 281 3.52e-16 78.2
Msa0777460 AT2G21235.1 34.722 144 62 3 160 271 359 502 8.82e-15 75.9
Msa0777460 AT2G42380.1 43.617 94 42 1 159 252 185 267 1.31e-14 74.3
Msa0777460 AT1G58110.1 42.353 85 49 0 169 253 238 322 2.16e-12 68.2
Msa0777460 AT1G58110.2 42.353 85 49 0 169 253 238 322 2.16e-12 68.2

Find 141 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTAATTATTTGTTCTTT+GGG 0.142916 5_2:-56433998 Msa0777460:three_prime_UTR
CTCGTTGTATCATTGTATTT+TGG 0.182569 5_2:-56433924 Msa0777460:three_prime_UTR
ATTCTTAATTATTTGTTCTT+TGG 0.192606 5_2:-56433999 Msa0777460:three_prime_UTR
CTTTGGGGTGCTCGCCAAAA+AGG 0.238417 5_2:-56433982 Msa0777460:three_prime_UTR
TTTGGATTTGAATTGGGATT+AGG 0.258134 5_2:+56437536 None:intergenic
AACATCCAGTTGCCACTATT+TGG 0.262115 5_2:-56434319 Msa0777460:CDS
TTGGATTTGAATTGGGATTA+GGG 0.289035 5_2:+56437537 None:intergenic
TTCATTGACACTCCAATTCA+TGG 0.291636 5_2:-56433819 Msa0777460:three_prime_UTR
ATTTGGATTTGGATTTGAAT+TGG 0.293787 5_2:+56437529 None:intergenic
AGCTATGCCTCCTGATAAAT+TGG 0.296982 5_2:-56437120 Msa0777460:CDS
AGTTGTACAATCTGATTGTT+TGG 0.297017 5_2:-56433747 Msa0777460:three_prime_UTR
TGAGATGCATTGTGAGGATT+TGG 0.311548 5_2:+56437512 None:intergenic
GAGTTCGTTTGGGGAGATTA+TGG 0.335399 5_2:-56437153 Msa0777460:CDS
GTTGATGGGTCGAGTTCGTT+TGG 0.349009 5_2:-56437164 Msa0777460:CDS
ATTCCACCACAAGGTCCTTC+TGG 0.351170 5_2:-56434349 Msa0777460:CDS
TTTGGATTTGGATTTGAATT+GGG 0.352095 5_2:+56437530 None:intergenic
TTCTGAATATGAATGAGAAT+TGG 0.357804 5_2:+56434255 None:intergenic
TTGATGGGTCGAGTTCGTTT+GGG 0.357989 5_2:-56437163 Msa0777460:CDS
GAAGGACCTTGTGGTGGAAT+TGG 0.359677 5_2:+56434352 None:intergenic
CAAAGCTCAGCCAATTTATC+AGG 0.368831 5_2:+56437110 None:intergenic
GCATTGTGAGGATTTGGATT+TGG 0.369319 5_2:+56437518 None:intergenic
CTGATAAATTGGCTGAGCTT+TGG 0.380438 5_2:-56437109 Msa0777460:CDS
GCGAGGGAAGAGTGAGGGTT+TGG 0.388039 5_2:+56437448 None:intergenic
TGGAGATGGTGGAGCAGATC+CGG 0.389694 5_2:-56437246 Msa0777460:CDS
CTAGCTATTCATAAAGTTCA+AGG 0.389780 5_2:+56433698 None:intergenic
AAGAACTCTAGTCCATGAAT+TGG 0.397754 5_2:+56433807 None:intergenic
CCAGTCAACATATGTACTTC+AGG 0.401612 5_2:-56434048 Msa0777460:three_prime_UTR
CGGCATAGTAATTCGGTTGA+TGG 0.408325 5_2:-56437179 Msa0777460:CDS
TTGACTTTCTAACTTATCCT+TGG 0.408435 5_2:-56434096 Msa0777460:three_prime_UTR
TGACTTTCTAACTTATCCTT+GGG 0.410540 5_2:-56434095 Msa0777460:three_prime_UTR
GGTGCCGCCGTGGAGGGTGG+TGG 0.417936 5_2:+56437479 None:intergenic
TGATGAGATGGCATGCTAGA+TGG 0.419162 5_2:+56434289 None:intergenic
TGATGATACAAATGAACAAA+GGG 0.420881 5_2:+56433888 None:intergenic
TTGATTCTGTAAATTGCATT+TGG 0.421076 5_2:+56434383 None:intergenic
GCCGTGGAGGGTGGTGGTGG+TGG 0.425584 5_2:+56437485 None:intergenic
GAAGAGTGAGGGTTTGGCGG+TGG 0.426383 5_2:+56437454 None:intergenic
GTTGTACAATCTGATTGTTT+GGG 0.428689 5_2:-56433746 Msa0777460:three_prime_UTR
TGTGCTCGACGGTGGTGGGA+AGG 0.436298 5_2:+56437413 None:intergenic
GCCGCCGTGGAGGGTGGTGG+TGG 0.445356 5_2:+56437482 None:intergenic
ATAGTGGCAACTGGATGTTC+CGG 0.448057 5_2:+56434323 None:intergenic
GTTGATGATCCGCCGGTGAA+TGG 0.450476 5_2:+56437335 None:intergenic
GAAAGAAGTTGAGAGATTGA+AGG 0.452522 5_2:-56434458 Msa0777460:CDS
CGGAGTGTGCTCGACGGTGG+TGG 0.459985 5_2:+56437408 None:intergenic
GTGGTTGGTGCCGCCGTGGA+GGG 0.462825 5_2:+56437473 None:intergenic
GCTTAACAGTTTACTATAGC+AGG 0.463870 5_2:+56433720 None:intergenic
GTCCCTGAAAACGACCAATC+TGG 0.466033 5_2:+56434218 None:intergenic
GAGGCATCGGCATAGTAATT+CGG 0.477726 5_2:-56437186 Msa0777460:CDS
TGCAGAAAGAGAAGGATCTT+CGG 0.478143 5_2:+56434159 None:intergenic
TCGTTTGGGGAGATTATGGA+TGG 0.478452 5_2:-56437149 Msa0777460:CDS
AGCAGAGAAAGAAAGAAGAA+AGG 0.482993 5_2:-56437652 Msa0777460:five_prime_UTR
GTTGCTCCATGGCTTGCAGA+CGG 0.483654 5_2:+56434680 None:intergenic
AGGGAAGAGTGAGGGTTTGG+CGG 0.487102 5_2:+56437451 None:intergenic
AGTGACCAAATAGTGGCAAC+TGG 0.487180 5_2:+56434314 None:intergenic
AATATGAATGAGAATTGGTT+TGG 0.494880 5_2:+56434260 None:intergenic
GTTGGTGCCGCCGTGGAGGG+TGG 0.497766 5_2:+56437476 None:intergenic
GAGAGATTGAAGGTTGCTAC+TGG 0.498616 5_2:-56434448 Msa0777460:CDS
ACGGTGGTGGGAAGGGAGAT+TGG 0.498701 5_2:+56437421 None:intergenic
AGTGAGGGTTTGGCGGTGGT+TGG 0.499760 5_2:+56437458 None:intergenic
TTATTGTAGCGAGACACAAC+AGG 0.501264 5_2:-56434733 Msa0777460:intron
GGTGGTTGGTGCCGCCGTGG+AGG 0.506744 5_2:+56437472 None:intergenic
TCTTAATTATTTGTTCTTTG+GGG 0.508199 5_2:-56433997 Msa0777460:three_prime_UTR
GTGCTCGACGGTGGTGGGAA+GGG 0.509858 5_2:+56437414 None:intergenic
ATCCGGTGAGGTCGAGGCAT+CGG 0.510001 5_2:-56437199 Msa0777460:CDS
CGATGAGGTGGAGAAGAATC+CGG 0.510949 5_2:-56437216 Msa0777460:CDS
GAGAGGTCCATCATGTCGTC+TGG 0.512123 5_2:+56437368 None:intergenic
TGCCCAACTGACACTATACC+AGG 0.512274 5_2:-56435146 Msa0777460:intron
TGCTCGTTCAAAAGAGAGAA+AGG 0.513956 5_2:-56435233 Msa0777460:CDS
AAGGGAGATTGGTGGTGCGA+GGG 0.518221 5_2:+56437432 None:intergenic
GAGTTGTAGCTTCAGTCTGT+AGG 0.522836 5_2:+56435173 None:intergenic
CACAAGGTCCTTCTGGTCAC+CGG 0.525022 5_2:-56434342 Msa0777460:CDS
CGTCGAGAACAAGTCATCTT+CGG 0.525043 5_2:+56437289 None:intergenic
AGAAGAATCCGGTGAGGTCG+AGG 0.527232 5_2:-56437205 Msa0777460:CDS
GAAGGGAGATTGGTGGTGCG+AGG 0.527352 5_2:+56437431 None:intergenic
TTCTAGTTCATGTATATAGC+GGG 0.529677 5_2:+56435210 None:intergenic
GCCGGTGAATGGATCGGAAG+GGG 0.535786 5_2:+56437346 None:intergenic
GATGGGGAGTGACCAAATAG+TGG 0.537737 5_2:+56434307 None:intergenic
TGAATGGATCGGAAGGGGAG+AGG 0.537969 5_2:+56437351 None:intergenic
TCCCCTTCCGATCCATTCAC+CGG 0.539027 5_2:-56437347 Msa0777460:CDS
GAGATGTGCTTGTTGCTCCA+TGG 0.539738 5_2:+56434669 None:intergenic
TACATTGACATGGATAAGCT+TGG 0.540603 5_2:-56437266 Msa0777460:CDS
AACCTGGTATAGTGTCAGTT+GGG 0.543208 5_2:+56435144 None:intergenic
GATGAGATGGCATGCTAGAT+GGG 0.545329 5_2:+56434290 None:intergenic
CCGCCGGTGAATGGATCGGA+AGG 0.545671 5_2:+56437344 None:intergenic
GGAGTGTGCTCGACGGTGGT+GGG 0.545945 5_2:+56437409 None:intergenic
GGAGATGGTGGAGCAGATCC+GGG 0.548529 5_2:-56437245 Msa0777460:CDS
TTATTACAAAATGACCAGAT+TGG 0.549243 5_2:-56434232 Msa0777460:CDS
CTTTCACTTGCAGAAAGAGA+AGG 0.554279 5_2:+56434151 None:intergenic
AGTTGTAGCTTCAGTCTGTA+GGG 0.555319 5_2:+56435174 None:intergenic
AAACCTGGTATAGTGTCAGT+TGG 0.558403 5_2:+56435143 None:intergenic
TAAGCTCCGTCTGCAAGCCA+TGG 0.558627 5_2:-56434686 Msa0777460:CDS
TCCACCTCATCGTTTCCACC+CGG 0.560234 5_2:+56437227 None:intergenic
GGCATAGTAATTCGGTTGAT+GGG 0.562173 5_2:-56437178 Msa0777460:CDS
GTGGTGGGAAGGGAGATTGG+TGG 0.562570 5_2:+56437424 None:intergenic
AACTTCGCAGCAAAACCCTA+CGG 0.565622 5_2:+56433951 None:intergenic
ATGATGATACAAATGAACAA+AGG 0.568945 5_2:+56433887 None:intergenic
GTTTGGTGCAGTTGATGAGA+TGG 0.569320 5_2:+56434277 None:intergenic
TTGATCCTAAGCGTGCCAAA+AGG 0.570345 5_2:-56437082 Msa0777460:intron
GGCGGTGGTTGGTGCCGCCG+TGG 0.570978 5_2:+56437469 None:intergenic
CCGCTTACCAGACGACATGA+TGG 0.571319 5_2:-56437375 Msa0777460:CDS
GTGGTGCGAGGGAAGAGTGA+GGG 0.571974 5_2:+56437443 None:intergenic
TGATCCGCCGGTGAATGGAT+CGG 0.573063 5_2:+56437340 None:intergenic
ATGGATAAGCTTGGAGATGG+TGG 0.575379 5_2:-56437257 Msa0777460:CDS
CCTGAAGTACATATGTTGAC+TGG 0.577049 5_2:+56434048 None:intergenic
ACGGCGAGCCTCGATGAGAT+CGG 0.578645 5_2:-56437314 Msa0777460:CDS
GGTGGTGCGAGGGAAGAGTG+AGG 0.580195 5_2:+56437442 None:intergenic
ATTCACCGGCGGATCATCAA+CGG 0.584726 5_2:-56437333 Msa0777460:CDS
TGCCGATGCCTCGACCTCAC+CGG 0.585516 5_2:+56437197 None:intergenic
ACTTCGCAGCAAAACCCTAC+GGG 0.593591 5_2:+56433952 None:intergenic
GGACTTGACATTAGTAGCAA+AGG 0.593896 5_2:-56434199 Msa0777460:CDS
TGGATGTTCCGGTGACCAGA+AGG 0.596869 5_2:+56434334 None:intergenic
GCTCGCCGTTGATGATCCGC+CGG 0.602248 5_2:+56437328 None:intergenic
TGGTAAGCGGAATGTGAGAT+CGG 0.602899 5_2:+56437388 None:intergenic
TCCGGGTGGAAACGATGAGG+TGG 0.606841 5_2:-56437228 Msa0777460:CDS
GTTCTAGTTCATGTATATAG+CGG 0.607918 5_2:+56435209 None:intergenic
CGTTTGGGGAGATTATGGAT+GGG 0.615032 5_2:-56437148 Msa0777460:CDS
AGCTCAGCCAATTTATCAGG+AGG 0.617494 5_2:+56437113 None:intergenic
GATAAGTTAGAAAGTCAAGT+GGG 0.628141 5_2:+56434101 None:intergenic
CAACAAGCACATCTCCGTGA+TGG 0.633902 5_2:-56434661 Msa0777460:intron
TGATGGGTCGAGTTCGTTTG+GGG 0.634252 5_2:-56437162 Msa0777460:CDS
CCATCATGTCGTCTGGTAAG+CGG 0.636641 5_2:+56437375 None:intergenic
GGTGATAATTGTTACCATCA+CGG 0.643305 5_2:+56434647 None:intergenic
GACATGGATAAGCTTGGAGA+TGG 0.645716 5_2:-56437260 Msa0777460:CDS
CGGTGACCAGAAGGACCTTG+TGG 0.645804 5_2:+56434343 None:intergenic
GTTCTCGACGTACATTGACA+TGG 0.649912 5_2:-56437276 Msa0777460:CDS
GGATAAGTTAGAAAGTCAAG+TGG 0.654723 5_2:+56434100 None:intergenic
CGCCGGTGAATGGATCGGAA+GGG 0.655187 5_2:+56437345 None:intergenic
TGACCAGAAGGACCTTGTGG+TGG 0.657394 5_2:+56434346 None:intergenic
CTTCGGATCCGATCTCATCG+AGG 0.668290 5_2:+56437306 None:intergenic
ACCACCACCACCCTCCACGG+CGG 0.672074 5_2:-56437483 Msa0777460:CDS
GATCGGAGTGTGCTCGACGG+TGG 0.675351 5_2:+56437405 None:intergenic
GATGGTGGAGCAGATCCGGG+TGG 0.680229 5_2:-56437242 Msa0777460:CDS
TACGCTCCAATTCCACCACA+AGG 0.681715 5_2:-56434358 Msa0777460:CDS
GATGATACAAATGAACAAAG+GGG 0.682561 5_2:+56433889 None:intergenic
GAAGTACATATGTTGACTGG+AGG 0.686960 5_2:+56434051 None:intergenic
ATGAGATGGCATGCTAGATG+GGG 0.693250 5_2:+56434291 None:intergenic
CAAGATTAAAAGATTCAGTG+TGG 0.696933 5_2:+56434413 None:intergenic
CCTTCCGATCCATTCACCGG+CGG 0.698144 5_2:-56437344 Msa0777460:CDS
AGATCCGGGTGGAAACGATG+AGG 0.705246 5_2:-56437231 Msa0777460:CDS
TGAGATCGGAGTGTGCTCGA+CGG 0.715470 5_2:+56437402 None:intergenic
GGTAATTGAGATGCATTGTG+AGG 0.715502 5_2:+56437506 None:intergenic
AGGTGGAGAAGAATCCGGTG+AGG 0.720043 5_2:-56437211 Msa0777460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTTTTTTATTAGTTT+AGG - chr5_2:56434448-56434467 Msa0777460:CDS 10.0%
!!! AGTTTTTTTTTATTAGTTTA+GGG - chr5_2:56434449-56434468 Msa0777460:CDS 10.0%
!!! ATTATTTTAATAAGCTATCT+TGG - chr5_2:56434650-56434669 Msa0777460:intron 15.0%
!!! ATCAACATCTAATATTTTTT+TGG + chr5_2:56434922-56434941 None:intergenic 15.0%
!!! ATTTTTTTTTTATAGTGATG+AGG - chr5_2:56435623-56435642 Msa0777460:intron 15.0%
!!! TTTTTTTTTTATAGTGATGA+GGG - chr5_2:56435624-56435643 Msa0777460:intron 15.0%
!!! TCTAGAAGATTTTATATAAA+AGG + chr5_2:56436459-56436478 None:intergenic 15.0%
!! ATTCTTAATTATTTGTTCTT+TGG - chr5_2:56437371-56437390 Msa0777460:CDS 15.0%
!! TTCTTAATTATTTGTTCTTT+GGG - chr5_2:56437372-56437391 Msa0777460:CDS 15.0%
!! TTCCAATTATAAACAGAATT+AGG - chr5_2:56435118-56435137 Msa0777460:intron 20.0%
!! AACCTAATTCTGTTTATAAT+TGG + chr5_2:56435123-56435142 None:intergenic 20.0%
!!! AACTAAAAATGTTTTCTTCT+TGG + chr5_2:56435159-56435178 None:intergenic 20.0%
!!! AGAAGAAAACATTTTTAGTT+AGG - chr5_2:56435159-56435178 Msa0777460:CDS 20.0%
!!! GAAGAAAACATTTTTAGTTA+GGG - chr5_2:56435160-56435179 Msa0777460:CDS 20.0%
!! AGTTAAAAAATTCAGCAATT+GGG + chr5_2:56435281-56435300 None:intergenic 20.0%
!!! TTTTTTTTTATAGTGATGAG+GGG - chr5_2:56435625-56435644 Msa0777460:intron 20.0%
!! TTATGCAAAAAGATTCTTAA+TGG + chr5_2:56435707-56435726 None:intergenic 20.0%
!!! ATAATTTTGAAGCTCAAATA+TGG - chr5_2:56435760-56435779 Msa0777460:intron 20.0%
!! ATATGTGTTTGTGTATTTAT+TGG + chr5_2:56435838-56435857 None:intergenic 20.0%
!!! ATATATTTGTTAGTGTATCT+TGG - chr5_2:56435854-56435873 Msa0777460:intron 20.0%
!!! CTTCTTAGATTTAAACTTTT+GGG - chr5_2:56435952-56435971 Msa0777460:intron 20.0%
!!! TTCTTAGATTTAAACTTTTG+GGG - chr5_2:56435953-56435972 Msa0777460:intron 20.0%
!!! AGTAACTTTGTTTTGTTTAT+TGG - chr5_2:56436300-56436319 Msa0777460:intron 20.0%
!!! GTTTTGTTTATTGGATTTAT+TGG - chr5_2:56436309-56436328 Msa0777460:intron 20.0%
!! TACTATACATATATTCACTT+CGG - chr5_2:56436483-56436502 Msa0777460:intron 20.0%
!!! TTTTTAACGTATTGTAAGAA+AGG + chr5_2:56436747-56436766 None:intergenic 20.0%
!! TCTTAATTATTTGTTCTTTG+GGG - chr5_2:56437373-56437392 Msa0777460:CDS 20.0%
! TTTGGATTTGGATTTGAATT+GGG + chr5_2:56433843-56433862 None:intergenic 25.0%
! ATTTGGATTTGGATTTGAAT+TGG + chr5_2:56433844-56433863 None:intergenic 25.0%
!! CAATGATGAGTATTTTTCTA+TGG - chr5_2:56434387-56434406 Msa0777460:CDS 25.0%
!!! TGGTTTGAGTTTTTGTTAAT+TGG - chr5_2:56434407-56434426 Msa0777460:CDS 25.0%
!! TTTTAATAAGCTATCTTGGA+TGG - chr5_2:56434654-56434673 Msa0777460:intron 25.0%
! CAGTTAAAAAATTCAGCAAT+TGG + chr5_2:56435282-56435301 None:intergenic 25.0%
!!! TTGTTTTGATAGTTTTTGTG+TGG - chr5_2:56435448-56435467 Msa0777460:intron 25.0%
!! CAATCTAGAATCACATAATA+GGG + chr5_2:56435542-56435561 None:intergenic 25.0%
!! ACAATCTAGAATCACATAAT+AGG + chr5_2:56435543-56435562 None:intergenic 25.0%
! TTGTACTTTATGATTAGAGA+TGG - chr5_2:56435681-56435700 Msa0777460:intron 25.0%
! GCTTCAAAATTATATGTTGA+TGG + chr5_2:56435753-56435772 None:intergenic 25.0%
!! GCTTCTTAGATTTAAACTTT+TGG - chr5_2:56435951-56435970 Msa0777460:intron 25.0%
!! TCTTAGATTTAAACTTTTGG+GGG - chr5_2:56435954-56435973 Msa0777460:intron 25.0%
! TTCAATTGTACTAATTGTTG+TGG - chr5_2:56436046-56436065 Msa0777460:intron 25.0%
!!! AGTCATTTTTTAGCTACAAT+TGG + chr5_2:56436400-56436419 None:intergenic 25.0%
!! TGTAGCTAAAAAATGACTTT+TGG - chr5_2:56436402-56436421 Msa0777460:intron 25.0%
! GGAAAAACTTAAAACAATCA+CGG + chr5_2:56436562-56436581 None:intergenic 25.0%
! TTTCCTCATACTTAAATTTG+TGG - chr5_2:56436577-56436596 Msa0777460:intron 25.0%
! CAAATAATCAAGAAGTGATT+GGG + chr5_2:56436612-56436631 None:intergenic 25.0%
! ACAAATAATCAAGAAGTGAT+TGG + chr5_2:56436613-56436632 None:intergenic 25.0%
! TTGAAGTAAATTAACTCAAC+TGG - chr5_2:56436816-56436835 Msa0777460:intron 25.0%
!!! TGTCTTTTAATTAACTCAAC+TGG - chr5_2:56436847-56436866 Msa0777460:intron 25.0%
!!! GTCTTTTAATTAACTCAACT+GGG - chr5_2:56436848-56436867 Msa0777460:intron 25.0%
! TTGATTCTGTAAATTGCATT+TGG + chr5_2:56436990-56437009 None:intergenic 25.0%
! AATATGAATGAGAATTGGTT+TGG + chr5_2:56437113-56437132 None:intergenic 25.0%
! TTCTGAATATGAATGAGAAT+TGG + chr5_2:56437118-56437137 None:intergenic 25.0%
! TTATTACAAAATGACCAGAT+TGG - chr5_2:56437138-56437157 Msa0777460:CDS 25.0%
!! TCGTTGTATCATTGTATTTT+GGG - chr5_2:56437447-56437466 Msa0777460:CDS 25.0%
! TGATGATACAAATGAACAAA+GGG + chr5_2:56437485-56437504 None:intergenic 25.0%
! ATGATGATACAAATGAACAA+AGG + chr5_2:56437486-56437505 None:intergenic 25.0%
TTGGATTTGAATTGGGATTA+GGG + chr5_2:56433836-56433855 None:intergenic 30.0%
TTTGGATTTGAATTGGGATT+AGG + chr5_2:56433837-56433856 None:intergenic 30.0%
! AAAATTACGAACGAACCTTT+TGG + chr5_2:56434306-56434325 None:intergenic 30.0%
GTTAAAATGAAGCGAAATTG+AGG - chr5_2:56434483-56434502 Msa0777460:intron 30.0%
GAACTTATGAAAAGAGCTTA+TGG - chr5_2:56434604-56434623 Msa0777460:intron 30.0%
! TAATTGATTTAGACCCTGTT+TGG + chr5_2:56434797-56434816 None:intergenic 30.0%
GAACAAGAATTGTTCAAAAC+AGG + chr5_2:56434830-56434849 None:intergenic 30.0%
!! TTCAAGTTTTACTAACCTTC+CGG - chr5_2:56434847-56434866 Msa0777460:intron 30.0%
TGCTAGATTTAAACAGTTGA+GGG + chr5_2:56435033-56435052 None:intergenic 30.0%
ATGCTAGATTTAAACAGTTG+AGG + chr5_2:56435034-56435053 None:intergenic 30.0%
! TTCCAAGACCAATTTTACAT+GGG + chr5_2:56435092-56435111 None:intergenic 30.0%
! TTTCCAAGACCAATTTTACA+TGG + chr5_2:56435093-56435112 None:intergenic 30.0%
!!! ACATTTTTAGTTAGGGAACT+AGG - chr5_2:56435167-56435186 Msa0777460:CDS 30.0%
ATTGGTAGAACTTACAAAGT+TGG + chr5_2:56435574-56435593 None:intergenic 30.0%
AAATACAATGCCTCAGTTAT+TGG + chr5_2:56435592-56435611 None:intergenic 30.0%
GCTCAAATATGGAAAAACAT+TGG - chr5_2:56435771-56435790 Msa0777460:intron 30.0%
! AAAAACATTGGTGTTTGACT+TGG - chr5_2:56435783-56435802 Msa0777460:intron 30.0%
!! TTCTAGTTCATGTATATAGC+GGG + chr5_2:56436163-56436182 None:intergenic 30.0%
!! GTTCTAGTTCATGTATATAG+CGG + chr5_2:56436164-56436183 None:intergenic 30.0%
ACAATTGGAACAAGGAAATA+TGG + chr5_2:56436385-56436404 None:intergenic 30.0%
!! TTTTAGCTACAATTGGAACA+AGG + chr5_2:56436393-56436412 None:intergenic 30.0%
ATATATTCACTTCGGTGATT+TGG - chr5_2:56436491-56436510 Msa0777460:intron 30.0%
TATATTCACTTCGGTGATTT+GGG - chr5_2:56436492-56436511 Msa0777460:intron 30.0%
!! AATGTTGCTTTGTTTGTGAA+TGG - chr5_2:56436532-56436551 Msa0777460:intron 30.0%
TAGCCACAAATTTAAGTATG+AGG + chr5_2:56436583-56436602 None:intergenic 30.0%
CAAGATTAAAAGATTCAGTG+TGG + chr5_2:56436960-56436979 None:intergenic 30.0%
! CACACTGAATCTTTTAATCT+TGG - chr5_2:56436958-56436977 Msa0777460:intron 30.0%
! GTAGCACAACATTTTGAATT+TGG - chr5_2:56437241-56437260 Msa0777460:CDS 30.0%
GATAAGTTAGAAAGTCAAGT+GGG + chr5_2:56437272-56437291 None:intergenic 30.0%
TTGACTTTCTAACTTATCCT+TGG - chr5_2:56437274-56437293 Msa0777460:CDS 30.0%
TGACTTTCTAACTTATCCTT+GGG - chr5_2:56437275-56437294 Msa0777460:CDS 30.0%
! CTCGTTGTATCATTGTATTT+TGG - chr5_2:56437446-56437465 Msa0777460:CDS 30.0%
! CGTTGTATCATTGTATTTTG+GGG - chr5_2:56437448-56437467 Msa0777460:CDS 30.0%
GATGATACAAATGAACAAAG+GGG + chr5_2:56437484-56437503 None:intergenic 30.0%
AGTTGTACAATCTGATTGTT+TGG - chr5_2:56437623-56437642 Msa0777460:five_prime_UTR 30.0%
GTTGTACAATCTGATTGTTT+GGG - chr5_2:56437624-56437643 Msa0777460:five_prime_UTR 30.0%
AGCAGAGAAAGAAAGAAGAA+AGG - chr5_2:56433718-56433737 Msa0777460:three_prime_UTR 35.0%
TACATTGACATGGATAAGCT+TGG - chr5_2:56434104-56434123 Msa0777460:three_prime_UTR 35.0%
TTTGTTCTGTGTTCAATCTG+TGG - chr5_2:56434506-56434525 Msa0777460:intron 35.0%
AACATACCCTTATCACAACT+CGG + chr5_2:56434542-56434561 None:intergenic 35.0%
! AGTTGTGATAAGGGTATGTT+TGG - chr5_2:56434542-56434561 Msa0777460:intron 35.0%
TAAGTTTCGTGAGACTATCT+AGG - chr5_2:56434580-56434599 Msa0777460:intron 35.0%
AATAAGCTCCTTATCCAAAC+AGG - chr5_2:56434780-56434799 Msa0777460:intron 35.0%
ATAAGCTCCTTATCCAAACA+GGG - chr5_2:56434781-56434800 Msa0777460:intron 35.0%
ATTTAGACCCTGTTTGGATA+AGG + chr5_2:56434791-56434810 None:intergenic 35.0%
!!! TTTTTTTGGCATTAACCCTC+CGG + chr5_2:56434908-56434927 None:intergenic 35.0%
AGAAATAGGAGTGGTCAAAA+TGG + chr5_2:56434988-56435007 None:intergenic 35.0%
! ATTTTACATGGGTGATACGA+GGG + chr5_2:56435081-56435100 None:intergenic 35.0%
! AATTTTACATGGGTGATACG+AGG + chr5_2:56435082-56435101 None:intergenic 35.0%
TCGTATCACCCATGTAAAAT+TGG - chr5_2:56435081-56435100 Msa0777460:intron 35.0%
!! AAGTTTGTTGTTTGTGCTTG+TGG - chr5_2:56435406-56435425 Msa0777460:intron 35.0%
ATTATTTGACTGGGATGAGT+TGG - chr5_2:56435498-56435517 Msa0777460:intron 35.0%
GTAAGTTCTACCAATAACTG+AGG - chr5_2:56435579-56435598 Msa0777460:intron 35.0%
!! TAGATTTAAACTTTTGGGGG+TGG - chr5_2:56435957-56435976 Msa0777460:intron 35.0%
GATAAATGTCAACACAAACC+TGG + chr5_2:56436245-56436264 None:intergenic 35.0%
GGTGATAATTGTTACCATCA+CGG + chr5_2:56436726-56436745 None:intergenic 35.0%
GAAAGAAGTTGAGAGATTGA+AGG - chr5_2:56436912-56436931 Msa0777460:intron 35.0%
GGATAAGTTAGAAAGTCAAG+TGG + chr5_2:56437273-56437292 None:intergenic 35.0%
GCTATGAAAAATGAATCCCA+AGG + chr5_2:56437294-56437313 None:intergenic 35.0%
TTCATTGACACTCCAATTCA+TGG - chr5_2:56437551-56437570 Msa0777460:CDS 35.0%
AAGAACTCTAGTCCATGAAT+TGG + chr5_2:56437566-56437585 None:intergenic 35.0%
GCTTAACAGTTTACTATAGC+AGG + chr5_2:56437653-56437672 None:intergenic 35.0%
GCATTGTGAGGATTTGGATT+TGG + chr5_2:56433855-56433874 None:intergenic 40.0%
TGAGATGCATTGTGAGGATT+TGG + chr5_2:56433861-56433880 None:intergenic 40.0%
GGTAATTGAGATGCATTGTG+AGG + chr5_2:56433867-56433886 None:intergenic 40.0%
GGCATAGTAATTCGGTTGAT+GGG - chr5_2:56434192-56434211 Msa0777460:CDS 40.0%
AGCTATGCCTCCTGATAAAT+TGG - chr5_2:56434250-56434269 Msa0777460:CDS 40.0%
CAAAGCTCAGCCAATTTATC+AGG + chr5_2:56434263-56434282 None:intergenic 40.0%
CTGATAAATTGGCTGAGCTT+TGG - chr5_2:56434261-56434280 Msa0777460:CDS 40.0%
TTCTCTCCGAGTTGTGATAA+GGG - chr5_2:56434533-56434552 Msa0777460:intron 40.0%
!! ACCACTCCTATTTCTGTGAT+GGG - chr5_2:56434993-56435012 Msa0777460:intron 40.0%
TTTACCCCCATCACAGAAAT+AGG + chr5_2:56435002-56435021 None:intergenic 40.0%
! CACCCATGTAAAATTGGTCT+TGG - chr5_2:56435087-56435106 Msa0777460:intron 40.0%
CAGATGCATGACAGAATTAG+GGG + chr5_2:56435231-56435250 None:intergenic 40.0%
CCAGATGCATGACAGAATTA+GGG + chr5_2:56435232-56435251 None:intergenic 40.0%
CTCGTCGCAATTATTTGACT+GGG - chr5_2:56435489-56435508 Msa0777460:intron 40.0%
TCCATGTTGTTCTATGTAGC+TGG - chr5_2:56435928-56435947 Msa0777460:intron 40.0%
CCATGTTGTTCTATGTAGCT+GGG - chr5_2:56435929-56435948 Msa0777460:intron 40.0%
!! ATTTAAACTTTTGGGGGTGG+AGG - chr5_2:56435960-56435979 Msa0777460:intron 40.0%
TGCTCGTTCAAAAGAGAGAA+AGG - chr5_2:56436137-56436156 Msa0777460:intron 40.0%
AGTTGTAGCTTCAGTCTGTA+GGG + chr5_2:56436199-56436218 None:intergenic 40.0%
AACCTGGTATAGTGTCAGTT+GGG + chr5_2:56436229-56436248 None:intergenic 40.0%
AAACCTGGTATAGTGTCAGT+TGG + chr5_2:56436230-56436249 None:intergenic 40.0%
CTCGAGGAAAATGATGAACA+AGG + chr5_2:56436362-56436381 None:intergenic 40.0%
TTATTGTAGCGAGACACAAC+AGG - chr5_2:56436637-56436656 Msa0777460:intron 40.0%
CACACTTCAAAAGTTTGAGC+AGG + chr5_2:56436793-56436812 None:intergenic 40.0%
AACATCCAGTTGCCACTATT+TGG - chr5_2:56437051-56437070 Msa0777460:intron 40.0%
GGACTTGACATTAGTAGCAA+AGG - chr5_2:56437171-56437190 Msa0777460:CDS 40.0%
TGCAGAAAGAGAAGGATCTT+CGG + chr5_2:56437214-56437233 None:intergenic 40.0%
CTTTCACTTGCAGAAAGAGA+AGG + chr5_2:56437222-56437241 None:intergenic 40.0%
! GAAGTACATATGTTGACTGG+AGG + chr5_2:56437322-56437341 None:intergenic 40.0%
CCTGAAGTACATATGTTGAC+TGG + chr5_2:56437325-56437344 None:intergenic 40.0%
CCAGTCAACATATGTACTTC+AGG - chr5_2:56437322-56437341 Msa0777460:CDS 40.0%
TGGTAAGCGGAATGTGAGAT+CGG + chr5_2:56433985-56434004 None:intergenic 45.0%
CGTCGAGAACAAGTCATCTT+CGG + chr5_2:56434084-56434103 None:intergenic 45.0%
GTTCTCGACGTACATTGACA+TGG - chr5_2:56434094-56434113 Msa0777460:three_prime_UTR 45.0%
GACATGGATAAGCTTGGAGA+TGG - chr5_2:56434110-56434129 Msa0777460:three_prime_UTR 45.0%
ATGGATAAGCTTGGAGATGG+TGG - chr5_2:56434113-56434132 Msa0777460:three_prime_UTR 45.0%
!! GAGGCATCGGCATAGTAATT+CGG - chr5_2:56434184-56434203 Msa0777460:CDS 45.0%
CGGCATAGTAATTCGGTTGA+TGG - chr5_2:56434191-56434210 Msa0777460:CDS 45.0%
! TTGATGGGTCGAGTTCGTTT+GGG - chr5_2:56434207-56434226 Msa0777460:CDS 45.0%
GAGTTCGTTTGGGGAGATTA+TGG - chr5_2:56434217-56434236 Msa0777460:CDS 45.0%
TCGTTTGGGGAGATTATGGA+TGG - chr5_2:56434221-56434240 Msa0777460:CDS 45.0%
CGTTTGGGGAGATTATGGAT+GGG - chr5_2:56434222-56434241 Msa0777460:CDS 45.0%
AGCTCAGCCAATTTATCAGG+AGG + chr5_2:56434260-56434279 None:intergenic 45.0%
TTGATCCTAAGCGTGCCAAA+AGG - chr5_2:56434288-56434307 Msa0777460:CDS 45.0%
CTTATCACAACTCGGAGAGA+AGG + chr5_2:56434534-56434553 None:intergenic 45.0%
CTTCTCTCCGAGTTGTGATA+AGG - chr5_2:56434532-56434551 Msa0777460:intron 45.0%
AGAGGCCTGTAATCCAGATT+CGG + chr5_2:56434873-56434892 None:intergenic 45.0%
!! GACCACTCCTATTTCTGTGA+TGG - chr5_2:56434992-56435011 Msa0777460:intron 45.0%
!! CCACTCCTATTTCTGTGATG+GGG - chr5_2:56434994-56435013 Msa0777460:intron 45.0%
!! CACTCCTATTTCTGTGATGG+GGG - chr5_2:56434995-56435014 Msa0777460:intron 45.0%
! GGGGAACTAGTTCTCAATGA+AGG + chr5_2:56435212-56435231 None:intergenic 45.0%
CCCTAATTCTGTCATGCATC+TGG - chr5_2:56435229-56435248 Msa0777460:CDS 45.0%
GCCAGATGCATGACAGAATT+AGG + chr5_2:56435233-56435252 None:intergenic 45.0%
GCATCTGGCTACATGTTCAA+TGG - chr5_2:56435244-56435263 Msa0777460:CDS 45.0%
GCTCGTCGCAATTATTTGAC+TGG - chr5_2:56435488-56435507 Msa0777460:intron 45.0%
CCCAGCTACATAGAACAACA+TGG + chr5_2:56435932-56435951 None:intergenic 45.0%
GTGGAGGATAATGTGAGAGT+GGG - chr5_2:56435976-56435995 Msa0777460:intron 45.0%
TGGAGGATAATGTGAGAGTG+GGG - chr5_2:56435977-56435996 Msa0777460:intron 45.0%
GAGTTGTAGCTTCAGTCTGT+AGG + chr5_2:56436200-56436219 None:intergenic 45.0%
GAACAAGGAAATATGGCTCG+AGG + chr5_2:56436378-56436397 None:intergenic 45.0%
GAGAGATTGAAGGTTGCTAC+TGG - chr5_2:56436922-56436941 Msa0777460:intron 45.0%
ATAGTGGCAACTGGATGTTC+CGG + chr5_2:56437050-56437069 None:intergenic 45.0%
AGTGACCAAATAGTGGCAAC+TGG + chr5_2:56437059-56437078 None:intergenic 45.0%
ATGAGATGGCATGCTAGATG+GGG + chr5_2:56437082-56437101 None:intergenic 45.0%
GATGAGATGGCATGCTAGAT+GGG + chr5_2:56437083-56437102 None:intergenic 45.0%
TGATGAGATGGCATGCTAGA+TGG + chr5_2:56437084-56437103 None:intergenic 45.0%
!! GTTTGGTGCAGTTGATGAGA+TGG + chr5_2:56437096-56437115 None:intergenic 45.0%
!! TGACCAGATTGGTCGTTTTC+AGG - chr5_2:56437149-56437168 Msa0777460:CDS 45.0%
!! GACCAGATTGGTCGTTTTCA+GGG - chr5_2:56437150-56437169 Msa0777460:CDS 45.0%
AACTTCGCAGCAAAACCCTA+CGG + chr5_2:56437422-56437441 None:intergenic 45.0%
!!! TTTTTTTTTTTTATTAGTTT+AGG - chr5_2:56435357-56435376 Msa0777460:intron 5.0%
!!! TTTTTTTTTTTATTAGTTTA+GGG - chr5_2:56435358-56435377 Msa0777460:intron 5.0%
CCATCATGTCGTCTGGTAAG+CGG + chr5_2:56433998-56434017 None:intergenic 50.0%
ATTCACCGGCGGATCATCAA+CGG - chr5_2:56434037-56434056 Msa0777460:three_prime_UTR 50.0%
CGATGAGGTGGAGAAGAATC+CGG - chr5_2:56434154-56434173 Msa0777460:CDS 50.0%
! GTTGATGGGTCGAGTTCGTT+TGG - chr5_2:56434206-56434225 Msa0777460:CDS 50.0%
! TGATGGGTCGAGTTCGTTTG+GGG - chr5_2:56434208-56434227 Msa0777460:CDS 50.0%
! ACGAACCTTTTGGCACGCTT+AGG + chr5_2:56434296-56434315 None:intergenic 50.0%
GTGGTCAAAATGGCTGCTAG+TGG + chr5_2:56434978-56434997 None:intergenic 50.0%
CCCCATCACAGAAATAGGAG+TGG + chr5_2:56434997-56435016 None:intergenic 50.0%
GGTGGAGGATAATGTGAGAG+TGG - chr5_2:56435975-56435994 Msa0777460:intron 50.0%
TGCCCAACTGACACTATACC+AGG - chr5_2:56436224-56436243 Msa0777460:intron 50.0%
! GAGATGTGCTTGTTGCTCCA+TGG + chr5_2:56436704-56436723 None:intergenic 50.0%
CAACAAGCACATCTCCGTGA+TGG - chr5_2:56436709-56436728 Msa0777460:intron 50.0%
TACGCTCCAATTCCACCACA+AGG - chr5_2:56437012-56437031 Msa0777460:intron 50.0%
! GAAGGACCTTGTGGTGGAAT+TGG + chr5_2:56437021-56437040 None:intergenic 50.0%
ATTCCACCACAAGGTCCTTC+TGG - chr5_2:56437021-56437040 Msa0777460:intron 50.0%
GATGGGGAGTGACCAAATAG+TGG + chr5_2:56437066-56437085 None:intergenic 50.0%
GTCCCTGAAAACGACCAATC+TGG + chr5_2:56437155-56437174 None:intergenic 50.0%
! TTTGGGGTGCTCGCCAAAAA+GGG - chr5_2:56437389-56437408 Msa0777460:CDS 50.0%
!! AAAAAGGGGAAGCACCCGTA+GGG - chr5_2:56437404-56437423 Msa0777460:CDS 50.0%
ACTTCGCAGCAAAACCCTAC+GGG + chr5_2:56437421-56437440 None:intergenic 50.0%
AGGGAAGAGTGAGGGTTTGG+CGG + chr5_2:56433922-56433941 None:intergenic 55.0%
!! AAGGGAGATTGGTGGTGCGA+GGG + chr5_2:56433941-56433960 None:intergenic 55.0%
TGAGATCGGAGTGTGCTCGA+CGG + chr5_2:56433971-56433990 None:intergenic 55.0%
CCGCTTACCAGACGACATGA+TGG - chr5_2:56433995-56434014 Msa0777460:three_prime_UTR 55.0%
GAGAGGTCCATCATGTCGTC+TGG + chr5_2:56434005-56434024 None:intergenic 55.0%
TGAATGGATCGGAAGGGGAG+AGG + chr5_2:56434022-56434041 None:intergenic 55.0%
TCCCCTTCCGATCCATTCAC+CGG - chr5_2:56434023-56434042 Msa0777460:three_prime_UTR 55.0%
TGATCCGCCGGTGAATGGAT+CGG + chr5_2:56434033-56434052 None:intergenic 55.0%
!! GTTGATGATCCGCCGGTGAA+TGG + chr5_2:56434038-56434057 None:intergenic 55.0%
CTTCGGATCCGATCTCATCG+AGG + chr5_2:56434067-56434086 None:intergenic 55.0%
!! TGGAGATGGTGGAGCAGATC+CGG - chr5_2:56434124-56434143 Msa0777460:exon 55.0%
AGATCCGGGTGGAAACGATG+AGG - chr5_2:56434139-56434158 Msa0777460:CDS 55.0%
TCCACCTCATCGTTTCCACC+CGG + chr5_2:56434146-56434165 None:intergenic 55.0%
AGGTGGAGAAGAATCCGGTG+AGG - chr5_2:56434159-56434178 Msa0777460:CDS 55.0%
AGAAGAATCCGGTGAGGTCG+AGG - chr5_2:56434165-56434184 Msa0777460:CDS 55.0%
ACTAACCTTCCGGCCGAATC+TGG - chr5_2:56434857-56434876 Msa0777460:intron 55.0%
GTAATCCAGATTCGGCCGGA+AGG + chr5_2:56434865-56434884 None:intergenic 55.0%
TCCGGCCGAATCTGGATTAC+AGG - chr5_2:56434865-56434884 Msa0777460:intron 55.0%
GCCTGTAATCCAGATTCGGC+CGG + chr5_2:56434869-56434888 None:intergenic 55.0%
ATTAACCCTCCGGCTCTTGG+GGG + chr5_2:56434898-56434917 None:intergenic 55.0%
CATTAACCCTCCGGCTCTTG+GGG + chr5_2:56434899-56434918 None:intergenic 55.0%
GCATTAACCCTCCGGCTCTT+GGG + chr5_2:56434900-56434919 None:intergenic 55.0%
TAAGCTCCGTCTGCAAGCCA+TGG - chr5_2:56436684-56436703 Msa0777460:intron 55.0%
! GTTGCTCCATGGCTTGCAGA+CGG + chr5_2:56436693-56436712 None:intergenic 55.0%
TGACCAGAAGGACCTTGTGG+TGG + chr5_2:56437027-56437046 None:intergenic 55.0%
CACAAGGTCCTTCTGGTCAC+CGG - chr5_2:56437028-56437047 Msa0777460:intron 55.0%
TGGATGTTCCGGTGACCAGA+AGG + chr5_2:56437039-56437058 None:intergenic 55.0%
!! CTTTGGGGTGCTCGCCAAAA+AGG - chr5_2:56437388-56437407 Msa0777460:CDS 55.0%
! TTGGGGTGCTCGCCAAAAAG+GGG - chr5_2:56437390-56437409 Msa0777460:CDS 55.0%
! CTACGGGTGCTTCCCCTTTT+TGG + chr5_2:56437405-56437424 None:intergenic 55.0%
!! CAAAAAGGGGAAGCACCCGT+AGG - chr5_2:56437403-56437422 Msa0777460:CDS 55.0%
AGTGAGGGTTTGGCGGTGGT+TGG + chr5_2:56433915-56433934 None:intergenic 60.0%
GAAGAGTGAGGGTTTGGCGG+TGG + chr5_2:56433919-56433938 None:intergenic 60.0%
GCGAGGGAAGAGTGAGGGTT+TGG + chr5_2:56433925-56433944 None:intergenic 60.0%
GTGGTGCGAGGGAAGAGTGA+GGG + chr5_2:56433930-56433949 None:intergenic 60.0%
!! GAAGGGAGATTGGTGGTGCG+AGG + chr5_2:56433942-56433961 None:intergenic 60.0%
! GTGGTGGGAAGGGAGATTGG+TGG + chr5_2:56433949-56433968 None:intergenic 60.0%
!! ACGGTGGTGGGAAGGGAGAT+TGG + chr5_2:56433952-56433971 None:intergenic 60.0%
GCCGGTGAATGGATCGGAAG+GGG + chr5_2:56434027-56434046 None:intergenic 60.0%
CGCCGGTGAATGGATCGGAA+GGG + chr5_2:56434028-56434047 None:intergenic 60.0%
CCTTCCGATCCATTCACCGG+CGG - chr5_2:56434026-56434045 Msa0777460:three_prime_UTR 60.0%
ACGGCGAGCCTCGATGAGAT+CGG - chr5_2:56434056-56434075 Msa0777460:three_prime_UTR 60.0%
!! GGAGATGGTGGAGCAGATCC+GGG - chr5_2:56434125-56434144 Msa0777460:exon 60.0%
TCCGGGTGGAAACGATGAGG+TGG - chr5_2:56434142-56434161 Msa0777460:CDS 60.0%
ATCCGGTGAGGTCGAGGCAT+CGG - chr5_2:56434171-56434190 Msa0777460:CDS 60.0%
TCTTTCCCCCAAGAGCCGGA+GGG - chr5_2:56434890-56434909 Msa0777460:intron 60.0%
GGCATTAACCCTCCGGCTCT+TGG + chr5_2:56434901-56434920 None:intergenic 60.0%
CGGTGACCAGAAGGACCTTG+TGG + chr5_2:56437030-56437049 None:intergenic 60.0%
ACCACCACCACCACCCTCCA+CGG - chr5_2:56433884-56433903 Msa0777460:three_prime_UTR 65.0%
GGTGGTGCGAGGGAAGAGTG+AGG + chr5_2:56433931-56433950 None:intergenic 65.0%
!! GTGCTCGACGGTGGTGGGAA+GGG + chr5_2:56433959-56433978 None:intergenic 65.0%
!! TGTGCTCGACGGTGGTGGGA+AGG + chr5_2:56433960-56433979 None:intergenic 65.0%
GGAGTGTGCTCGACGGTGGT+GGG + chr5_2:56433964-56433983 None:intergenic 65.0%
GATCGGAGTGTGCTCGACGG+TGG + chr5_2:56433968-56433987 None:intergenic 65.0%
CCGCCGGTGAATGGATCGGA+AGG + chr5_2:56434029-56434048 None:intergenic 65.0%
!! GCTCGCCGTTGATGATCCGC+CGG + chr5_2:56434045-56434064 None:intergenic 65.0%
!! GATGGTGGAGCAGATCCGGG+TGG - chr5_2:56434128-56434147 Msa0777460:exon 65.0%
TGCCGATGCCTCGACCTCAC+CGG + chr5_2:56434176-56434195 None:intergenic 65.0%
GGCCTCTTTCCCCCAAGAGC+CGG - chr5_2:56434886-56434905 Msa0777460:intron 65.0%
CTCCGGCTCTTGGGGGAAAG+AGG + chr5_2:56434891-56434910 None:intergenic 65.0%
CTCTTTCCCCCAAGAGCCGG+AGG - chr5_2:56434889-56434908 Msa0777460:intron 65.0%
ACCACCACCACCCTCCACGG+CGG - chr5_2:56433887-56433906 Msa0777460:three_prime_UTR 70.0%
!! GTGGTTGGTGCCGCCGTGGA+GGG + chr5_2:56433900-56433919 None:intergenic 70.0%
CGGAGTGTGCTCGACGGTGG+TGG + chr5_2:56433965-56433984 None:intergenic 70.0%
!! GCCGTGGAGGGTGGTGGTGG+TGG + chr5_2:56433888-56433907 None:intergenic 75.0%
!! GTTGGTGCCGCCGTGGAGGG+TGG + chr5_2:56433897-56433916 None:intergenic 75.0%
!! GGTGGTTGGTGCCGCCGTGG+AGG + chr5_2:56433901-56433920 None:intergenic 75.0%
!! GCCGCCGTGGAGGGTGGTGG+TGG + chr5_2:56433891-56433910 None:intergenic 80.0%
!! GGTGCCGCCGTGGAGGGTGG+TGG + chr5_2:56433894-56433913 None:intergenic 80.0%
!!! GGCGGTGGTTGGTGCCGCCG+TGG + chr5_2:56433904-56433923 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 56433713 56437679 56433713 ID=Msa0777460;Name=Msa0777460
chr5_2 mRNA 56433713 56437679 56433713 ID=Msa0777460-mRNA-1;Parent=Msa0777460;Name=Msa0777460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=100|1|1|1|1|1|4|422|359
chr5_2 exon 56433713 56434499 56433713 ID=Msa0777460-mRNA-1:exon:16718;Parent=Msa0777460-mRNA-1
chr5_2 exon 56434662 56434746 56434662 ID=Msa0777460-mRNA-1:exon:16717;Parent=Msa0777460-mRNA-1
chr5_2 exon 56435147 56435279 56435147 ID=Msa0777460-mRNA-1:exon:16716;Parent=Msa0777460-mRNA-1
chr5_2 exon 56437083 56437679 56437083 ID=Msa0777460-mRNA-1:exon:16715;Parent=Msa0777460-mRNA-1
chr5_2 five_prime_UTR 56437580 56437679 56437580 ID=Msa0777460-mRNA-1:five_prime_utr;Parent=Msa0777460-mRNA-1
chr5_2 CDS 56437083 56437579 56437083 ID=Msa0777460-mRNA-1:cds;Parent=Msa0777460-mRNA-1
chr5_2 CDS 56435147 56435279 56435147 ID=Msa0777460-mRNA-1:cds;Parent=Msa0777460-mRNA-1
chr5_2 CDS 56434662 56434746 56434662 ID=Msa0777460-mRNA-1:cds;Parent=Msa0777460-mRNA-1
chr5_2 CDS 56434135 56434499 56434135 ID=Msa0777460-mRNA-1:cds;Parent=Msa0777460-mRNA-1
chr5_2 three_prime_UTR 56433713 56434134 56433713 ID=Msa0777460-mRNA-1:three_prime_utr;Parent=Msa0777460-mRNA-1
Gene Sequence

>Msa0777460

ATGCAACATCAATCTTCAAACCCTAATCCCAATTCAAATCCAAATCCAAATCCTCACAATGCATCTCAATTACCACCACCACCACCCTCCACGGCGGCACCAACCACCGCCAAACCCTCACTCTTCCCTCGCACCACCAATCTCCCTTCCCACCACCGTCGAGCACACTCCGATCTCACATTCCGCTTACCAGACGACATGATGGACCTCTCCCCTTCCGATCCATTCACCGGCGGATCATCAACGGCGAGCCTCGATGAGATCGGATCCGAAGATGACTTGTTCTCGACGTACATTGACATGGATAAGCTTGGAGATGGTGGAGCAGATCCGGGTGGAAACGATGAGGTGGAGAAGAATCCGGTGAGGTCGAGGCATCGGCATAGTAATTCGGTTGATGGGTCGAGTTCGTTTGGGGAGATTATGGATGGGAAGAAAGCTATGCCTCCTGATAAATTGGCTGAGCTTTGGTCTGTTGATCCTAAGCGTGCCAAAAGAATACTTGCTAATCGACAATCTGCTGCTCGTTCAAAAGAGAGAAAGGCCCGCTATATACATGAACTAGAACGCAAAGTTCAGACCCTACAGACTGAAGCTACAACTCTTTCTGCCCAACTGACACTATACCAGCGAGACACAACAGGTCTGAGTACTGAAAATACTGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAACAAGCACATCTCCGTGATGCTCTTAATGATGCATTGAAGAAAGAAGTTGAGAGATTGAAGGTTGCTACTGGAGATATAATGAGCCACACTGAATCTTTTAATCTTGGTATGCACCAAATGCAATTTACAGAATCAAATTACGCTCCAATTCCACCACAAGGTCCTTCTGGTCACCGGAACATCCAGTTGCCACTATTTGGTCACTCCCCATCTAGCATGCCATCTCATCAACTGCACCAAACCAATTCTCATTCATATTCAGAATTATTACAAAATGACCAGATTGGTCGTTTTCAGGGACTTGACATTAGTAGCAAAGGAACAGCTGTTGTAAAGTCCGAAGATCCTTCTCTTTCTGCAAGTGAAAGTAGCACAACATTTTGA
Protein sequence

>Msa0777460

MQHQSSNPNPNSNPNPNPHNASQLPPPPPSTAAPTTAKPSLFPRTTNLPSHHRRAHSDLTFRLPDDMMDLSPSDPFTGGSSTASLDEIGSEDDLFSTYIDMDKLGDGGADPGGNDEVEKNPVRSRHRHSNSVDGSSSFGEIMDGKKAMPPDKLAELWSVDPKRAKRILANRQSAARSKERKARYIHELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAHLRDALNDALKKEVERLKVATGDIMSHTESFNLGMHQMQFTESNYAPIPPQGPSGHRNIQLPLFGHSPSSMPSHQLHQTNSHSYSELLQNDQIGRFQGLDISSKGTAVVKSEDPSLSASESSTTF*