Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496040 | XP_004499921.1 | 92.079 | 505 | 34 | 2 | 24 | 522 | 1 | 505 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496040 | sp|Q9FNA2|PAO1_ARATH | 75.391 | 447 | 96 | 2 | 46 | 492 | 20 | 452 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496040 | A0A1S2Y626 | 92.079 | 505 | 34 | 2 | 24 | 522 | 1 | 505 | 0.0 | 917 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0127910 | Msa0496040 | -0.808731 | 2.682039e-50 | -8.615850e-47 |
| Msa0390590 | Msa0496040 | -0.808475 | 3.041479e-50 | -8.615850e-47 |
| Msa0401260 | Msa0496040 | 0.908238 | 2.126952e-81 | -8.615850e-47 |
| Msa0448030 | Msa0496040 | 0.816613 | 5.052044e-52 | -8.615850e-47 |
| Msa0354350 | Msa0496040 | 0.886946 | 2.196266e-72 | -8.615850e-47 |
| Msa0496040 | Msa0560280 | 0.837855 | 4.062732e-57 | -8.615850e-47 |
| Msa0496040 | Msa0614290 | 0.842905 | 1.942870e-58 | -8.615850e-47 |
| Msa0496040 | Msa0638810 | 0.821599 | 3.706919e-53 | -8.615850e-47 |
| Msa0496040 | Msa0638820 | 0.842356 | 2.718077e-58 | -8.615850e-47 |
| Msa0496040 | Msa0672950 | 0.801069 | 1.071258e-48 | -8.615850e-47 |
| Msa0496040 | Msa0672980 | 0.803409 | 3.534764e-49 | -8.615850e-47 |
| Msa0496040 | Msa0697510 | 0.842320 | 2.779297e-58 | -8.615850e-47 |
| Msa0496040 | Msa0697520 | 0.838616 | 2.587753e-57 | -8.615850e-47 |
| Msa0496040 | Msa1377980 | -0.802710 | 4.929297e-49 | -8.615850e-47 |
| Msa0496040 | Msa1402300 | 0.801053 | 1.079710e-48 | -8.615850e-47 |
| Msa0496040 | Msa1408280 | -0.802797 | 4.729776e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496040 | MtrunA17_Chr3g0089841 | 94.212 | 501 | 27 | 1 | 24 | 522 | 1 | 501 | 0.0 | 912 |
| Msa0496040 | MtrunA17_Chr3g0109701 | 27.096 | 513 | 308 | 16 | 15 | 493 | 11 | 491 | 4.43e-39 | 149 |
| Msa0496040 | MtrunA17_Chr5g0442341 | 27.846 | 492 | 298 | 16 | 1 | 467 | 1 | 460 | 1.03e-34 | 136 |
| Msa0496040 | MtrunA17_Chr3g0100181 | 26.539 | 471 | 286 | 21 | 15 | 454 | 145 | 586 | 4.12e-32 | 130 |
| Msa0496040 | MtrunA17_Chr3g0095231 | 27.821 | 514 | 317 | 20 | 1 | 491 | 1 | 483 | 1.28e-31 | 127 |
| Msa0496040 | MtrunA17_Chr6g0484711 | 25.773 | 485 | 293 | 17 | 25 | 469 | 215 | 672 | 1.02e-30 | 127 |
| Msa0496040 | MtrunA17_Chr8g0360771 | 25.210 | 476 | 301 | 18 | 19 | 465 | 151 | 600 | 2.32e-24 | 107 |
| Msa0496040 | MtrunA17_Chr1g0171381 | 26.378 | 254 | 162 | 9 | 219 | 454 | 392 | 638 | 2.04e-21 | 98.6 |
| Msa0496040 | MtrunA17_Chr1g0155921 | 26.357 | 258 | 177 | 7 | 252 | 504 | 1134 | 1383 | 7.79e-21 | 97.1 |
| Msa0496040 | MtrunA17_Chr3g0142301 | 26.295 | 251 | 171 | 7 | 238 | 477 | 1113 | 1360 | 9.54e-21 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496040 | AT5G13700.1 | 75.391 | 447 | 96 | 2 | 46 | 492 | 20 | 452 | 0.0 | 705 |
| Msa0496040 | AT3G59050.1 | 27.609 | 460 | 274 | 16 | 24 | 454 | 23 | 452 | 6.40e-41 | 154 |
| Msa0496040 | AT1G65840.1 | 27.983 | 461 | 292 | 14 | 19 | 458 | 16 | 457 | 9.08e-40 | 151 |
| Msa0496040 | AT2G43020.1 | 27.816 | 435 | 267 | 15 | 43 | 454 | 41 | 451 | 4.34e-36 | 140 |
| Msa0496040 | AT1G62830.1 | 25.210 | 476 | 297 | 18 | 25 | 467 | 261 | 710 | 4.59e-29 | 122 |
| Msa0496040 | AT3G10390.4 | 24.895 | 478 | 305 | 20 | 23 | 471 | 178 | 630 | 9.90e-29 | 121 |
| Msa0496040 | AT3G10390.2 | 24.895 | 478 | 305 | 20 | 23 | 471 | 230 | 682 | 1.06e-28 | 121 |
| Msa0496040 | AT3G10390.3 | 24.895 | 478 | 305 | 20 | 23 | 471 | 230 | 682 | 1.07e-28 | 121 |
| Msa0496040 | AT3G10390.1 | 24.895 | 478 | 305 | 20 | 23 | 471 | 178 | 630 | 1.33e-28 | 120 |
| Msa0496040 | AT4G16310.2 | 26.568 | 271 | 176 | 6 | 213 | 477 | 865 | 1118 | 1.82e-24 | 108 |
| Msa0496040 | AT4G16310.3 | 26.568 | 271 | 176 | 6 | 213 | 477 | 865 | 1118 | 1.82e-24 | 108 |
| Msa0496040 | AT4G16310.5 | 26.568 | 271 | 176 | 6 | 213 | 477 | 865 | 1118 | 1.82e-24 | 108 |
| Msa0496040 | AT4G16310.1 | 26.568 | 271 | 176 | 6 | 213 | 477 | 865 | 1118 | 1.82e-24 | 108 |
| Msa0496040 | AT4G16310.4 | 26.568 | 271 | 176 | 6 | 213 | 477 | 865 | 1118 | 1.82e-24 | 108 |
| Msa0496040 | AT3G13682.1 | 28.634 | 454 | 267 | 21 | 31 | 454 | 161 | 587 | 3.31e-22 | 101 |
| Msa0496040 | AT4G29720.1 | 22.826 | 276 | 164 | 5 | 238 | 465 | 256 | 530 | 9.89e-11 | 64.7 |
Find 146 sgRNAs with CRISPR-Local
Find 639 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATATTGGAGACTGTTTC+TGG | 0.094196 | 3_4:-25985034 | None:intergenic |
| ATATCTACATATGTAGATTT+TGG | 0.133651 | 3_4:+25976838 | Msa0496040:CDS |
| CTCTTCTCTCACACATTTCA+TGG | 0.203556 | 3_4:+25974739 | Msa0496040:CDS |
| CGATTACTTGTTATACAAAA+TGG | 0.229230 | 3_4:+25976897 | Msa0496040:CDS |
| CTTCCTTATTTCTTCTACTA+AGG | 0.243305 | 3_4:-25984930 | None:intergenic |
| TATAGTCATAATATGGCTTC+TGG | 0.249282 | 3_4:-25985106 | None:intergenic |
| GGAGAGGCTATTACACATTT+TGG | 0.259480 | 3_4:+25981468 | Msa0496040:CDS |
| CACACCAGTGAAAGATTTAA+TGG | 0.270263 | 3_4:+25984517 | Msa0496040:CDS |
| TGAAGTTTCCGTATAGGTTT+TGG | 0.285338 | 3_4:+25981402 | Msa0496040:CDS |
| CTTGTATTGCAAGTAAAATT+AGG | 0.292745 | 3_4:-25985440 | None:intergenic |
| AATATCGCATTTGTGGATAT+TGG | 0.304813 | 3_4:-25985047 | None:intergenic |
| TGCTTTGTTGCCATCATCAT+TGG | 0.306407 | 3_4:-25976008 | None:intergenic |
| TTCTTGAATGTTGCAATTCC+CGG | 0.314171 | 3_4:-25979986 | None:intergenic |
| AAGCCTTAGTAGAAGAAATA+AGG | 0.318756 | 3_4:+25984927 | Msa0496040:CDS |
| AACAGACAGAATCACATAAT+TGG | 0.318861 | 3_4:-25980051 | None:intergenic |
| TTAGTTCATTCCACTCCTAA+TGG | 0.327824 | 3_4:+25985296 | Msa0496040:three_prime_UTR |
| TTCCCCGCTGGTGGAATAAC+AGG | 0.331812 | 3_4:+25983613 | Msa0496040:CDS |
| AACTCCATATAGTCATAATA+TGG | 0.338518 | 3_4:-25985113 | None:intergenic |
| CTCGGTGCCGGTTGGATCGC+TGG | 0.340198 | 3_4:+25975042 | Msa0496040:CDS |
| AAATCTACATATGTAGATAT+TGG | 0.354394 | 3_4:-25976835 | None:intergenic |
| CAATGTCACGACTAAGATAT+TGG | 0.355167 | 3_4:-25983472 | None:intergenic |
| AAGGTTCCAACAATAGAGTT+TGG | 0.355586 | 3_4:-25984976 | None:intergenic |
| TCTTTCTGAAGTTTCCGTAT+AGG | 0.358661 | 3_4:+25981396 | Msa0496040:CDS |
| TAGTCGTGACATTGACTAAT+GGG | 0.362163 | 3_4:+25983481 | Msa0496040:CDS |
| CCACATGGCCAAAACCTATA+CGG | 0.371294 | 3_4:-25981410 | None:intergenic |
| GAAGCCATATTATGACTATA+TGG | 0.371310 | 3_4:+25985109 | Msa0496040:exon |
| GCGAAAGTTACCGGAGATTC+CGG | 0.372633 | 3_4:-25974798 | None:intergenic |
| ACTTTACGATTGGAGATAAT+CGG | 0.378806 | 3_4:-25983663 | None:intergenic |
| TACGGATCCTGCCGCCGATT+CGG | 0.390118 | 3_4:-25974990 | None:intergenic |
| TAGATTGATTGACAAAATAC+TGG | 0.391689 | 3_4:+25985215 | Msa0496040:three_prime_UTR |
| GTCGTGAAGCTAATCCTGTT+TGG | 0.396223 | 3_4:+25975073 | Msa0496040:CDS |
| TTAACCTAGTTGGCTCCATT+AGG | 0.400382 | 3_4:-25985311 | None:intergenic |
| GCGAGTTCTACTGGCGTCTT+AGG | 0.406999 | 3_4:-25976233 | None:intergenic |
| TATATGTTGGTGAGGTTAAG+AGG | 0.410503 | 3_4:+25985241 | Msa0496040:three_prime_UTR |
| TATGTCTTCTACACCGTTCT+CGG | 0.413343 | 3_4:-25974947 | None:intergenic |
| AAATCAATGGCGAGTTCTAC+TGG | 0.413846 | 3_4:-25976242 | None:intergenic |
| TTAGTCGTGACATTGACTAA+TGG | 0.414836 | 3_4:+25983480 | Msa0496040:CDS |
| GTGAAGAAAATGCGACCAAC+AGG | 0.420723 | 3_4:-25984487 | None:intergenic |
| ATCATCGGTGCCGGAATCTC+CGG | 0.422574 | 3_4:+25974788 | Msa0496040:CDS |
| GAGAAGCTATGGCGGTGCTC+AGG | 0.428843 | 3_4:+25983547 | Msa0496040:CDS |
| CGGAAACTTCAGAAAGATCT+TGG | 0.431867 | 3_4:-25981390 | None:intergenic |
| TCGTGAAGCTAATCCTGTTT+GGG | 0.433490 | 3_4:+25975074 | Msa0496040:CDS |
| GATGACGGAGGAGCGATTAG+AGG | 0.434555 | 3_4:-25974765 | None:intergenic |
| TGAAAGCCAAACTCTATTGT+TGG | 0.437206 | 3_4:+25984970 | Msa0496040:CDS |
| GTCAATAGCATCGGGGATGT+TGG | 0.437825 | 3_4:-25983583 | None:intergenic |
| CGATTCGGTCCGATGCTTCA+AGG | 0.441261 | 3_4:-25974975 | None:intergenic |
| ATTATAAGAATCGTAATTGA+TGG | 0.444001 | 3_4:+25985155 | Msa0496040:three_prime_UTR |
| ATAAGTAAGATTACAATGTA+AGG | 0.447759 | 3_4:+25985394 | Msa0496040:three_prime_UTR |
| CACTCCTAATGGAGCCAACT+AGG | 0.452521 | 3_4:+25985307 | Msa0496040:three_prime_UTR |
| TCAATAGCATCGGGGATGTT+GGG | 0.456466 | 3_4:-25983582 | None:intergenic |
| GAATTGCAACATTCAAGAAA+TGG | 0.457567 | 3_4:+25979990 | Msa0496040:CDS |
| ATGGAATTATACAGGTCGTC+CGG | 0.460415 | 3_4:+25979967 | Msa0496040:intron |
| ATAGTCATAATATGGCTTCT+GGG | 0.463515 | 3_4:-25985105 | None:intergenic |
| CGGTGGAACTCGGTGCCGGT+TGG | 0.464338 | 3_4:+25975034 | Msa0496040:CDS |
| CATTACATCACATTTCTCAA+TGG | 0.466921 | 3_4:-25981360 | None:intergenic |
| TTGGCCATGTGGACCCGAAA+AGG | 0.467710 | 3_4:+25981421 | Msa0496040:CDS |
| TTATATCTGAGTGGCAAGCT+TGG | 0.468336 | 3_4:+25985079 | Msa0496040:CDS |
| CGCTCCTCCGTCATCATCAT+CGG | 0.471733 | 3_4:+25974773 | Msa0496040:CDS |
| GCCGGTTGGATCGCTGGTGT+TGG | 0.475999 | 3_4:+25975048 | Msa0496040:CDS |
| ACAAGTATGTCAATAGCATC+GGG | 0.478636 | 3_4:-25983591 | None:intergenic |
| GAACCTTTGCTAGCATTGAC+AGG | 0.480559 | 3_4:+25984992 | Msa0496040:CDS |
| TCTTTCACTGGTGTGCTCTC+CGG | 0.484186 | 3_4:-25984509 | None:intergenic |
| GCGGTGCTCAGGGATATGTT+TGG | 0.484250 | 3_4:+25983558 | Msa0496040:CDS |
| GTGTAGGAATATCGCATTTG+TGG | 0.485006 | 3_4:-25985054 | None:intergenic |
| CACATCGGAAGGTAGAATCT+TGG | 0.485410 | 3_4:+25976936 | Msa0496040:CDS |
| TACTGGTAAGGGTGGATTGA+AGG | 0.489901 | 3_4:-25980105 | None:intergenic |
| TCAACAGCGAGTTCCCAAAC+AGG | 0.493183 | 3_4:-25975087 | None:intergenic |
| GACTTTCTCTTCACATCGGA+AGG | 0.497849 | 3_4:+25976925 | Msa0496040:CDS |
| ATTGAGAAAACGTACTGGTA+AGG | 0.498411 | 3_4:-25980117 | None:intergenic |
| TTCTCTCAAGGTCTCTTCAT+CGG | 0.500684 | 3_4:-25983529 | None:intergenic |
| GTGATTCTGTCTGTTAGCAT+TGG | 0.501514 | 3_4:+25980059 | Msa0496040:CDS |
| CACGACTAAGATATTGGAGC+CGG | 0.502176 | 3_4:-25983466 | None:intergenic |
| TATATCTTTCAGGCTCCTGT+TGG | 0.504815 | 3_4:+25984472 | Msa0496040:intron |
| CATCGGACCGAATCGGCGGC+AGG | 0.505197 | 3_4:+25974983 | Msa0496040:CDS |
| TCCGTCATCATCATCGGTGC+CGG | 0.506842 | 3_4:+25974779 | Msa0496040:CDS |
| AGGATCCGTAAGGAATGTTT+CGG | 0.507515 | 3_4:+25975003 | Msa0496040:CDS |
| ATATCCATTAAATCTTTCAC+TGG | 0.511525 | 3_4:-25984521 | None:intergenic |
| TCCAACACCAGCGATCCAAC+CGG | 0.512194 | 3_4:-25975049 | None:intergenic |
| TTGACATACTTGTTCCCCGC+TGG | 0.514737 | 3_4:+25983601 | Msa0496040:CDS |
| AACAAGTATGTCAATAGCAT+CGG | 0.517386 | 3_4:-25983592 | None:intergenic |
| GTGTCGGTGGAACTCGGTGC+CGG | 0.518469 | 3_4:+25975030 | Msa0496040:CDS |
| GGAGTTGTAGAGAATCCTCT+TGG | 0.518489 | 3_4:+25985130 | Msa0496040:three_prime_UTR |
| AGAAGCTATGGCGGTGCTCA+GGG | 0.523544 | 3_4:+25983548 | Msa0496040:CDS |
| ACATACTTGTTCCCCGCTGG+TGG | 0.527068 | 3_4:+25983604 | Msa0496040:CDS |
| CTTGAAGCATCGGACCGAAT+CGG | 0.529841 | 3_4:+25974976 | Msa0496040:CDS |
| AAACCTGTTATTCCACCAGC+GGG | 0.532910 | 3_4:-25983616 | None:intergenic |
| GATTTGCTTAACATTATAGC+GGG | 0.532975 | 3_4:-25974680 | None:intergenic |
| GGTGGCGTGTCGGTGGAACT+CGG | 0.534783 | 3_4:+25975024 | Msa0496040:CDS |
| TTGGTGAGGTTAAGAGGTGA+TGG | 0.535422 | 3_4:+25985247 | Msa0496040:three_prime_UTR |
| TTGAGAAAACGTACTGGTAA+GGG | 0.538437 | 3_4:-25980116 | None:intergenic |
| CACATGGATAATGCATATCC+CGG | 0.542495 | 3_4:+25983447 | Msa0496040:CDS |
| TGGAATTATACAGGTCGTCC+GGG | 0.549725 | 3_4:+25979968 | Msa0496040:intron |
| GATGATGAAGCCAATGATGA+TGG | 0.554008 | 3_4:+25975998 | Msa0496040:CDS |
| ACATTCAAGAAATGGTGTTA+CGG | 0.556836 | 3_4:+25979998 | Msa0496040:CDS |
| ATGTTTCGGTGGCGTGTCGG+TGG | 0.559971 | 3_4:+25975017 | Msa0496040:CDS |
| CGCCACCGAAACATTCCTTA+CGG | 0.564803 | 3_4:-25975008 | None:intergenic |
| CCACTCAGATATAATTGTGT+AGG | 0.567769 | 3_4:-25985070 | None:intergenic |
| AAATGGTGTTACGGTGATCA+CGG | 0.568810 | 3_4:+25980007 | Msa0496040:CDS |
| AGAGACCTTGAGAGAAGCTA+TGG | 0.571528 | 3_4:+25983536 | Msa0496040:CDS |
| CATAGTGATCCTTGAAGCAT+CGG | 0.572895 | 3_4:+25974966 | Msa0496040:CDS |
| ATCATGCAGAATGAAATCAA+TGG | 0.573821 | 3_4:-25976255 | None:intergenic |
| GGTTGGATCGCTGGTGTTGG+AGG | 0.575776 | 3_4:+25975051 | Msa0496040:CDS |
| AGATTTAATGGATATGTACA+TGG | 0.576830 | 3_4:+25984529 | Msa0496040:CDS |
| GCTTCAACATCTATGATCAA+AGG | 0.581866 | 3_4:+25975151 | Msa0496040:CDS |
| CATCATTGCATGGTGAGTCA+TGG | 0.582682 | 3_4:+25985187 | Msa0496040:three_prime_UTR |
| CATTGAGAAATGTGATGTAA+TGG | 0.583606 | 3_4:+25981361 | Msa0496040:CDS |
| GGAATGTTTCGGTGGCGTGT+CGG | 0.591455 | 3_4:+25975014 | Msa0496040:CDS |
| ACGACTAAGATATTGGAGCC+GGG | 0.601492 | 3_4:-25983465 | None:intergenic |
| GATCCTGTCAATGCTAGCAA+AGG | 0.602229 | 3_4:-25984995 | None:intergenic |
| AAAATACTGGAAGTATATGT+TGG | 0.608134 | 3_4:+25985228 | Msa0496040:three_prime_UTR |
| TGAAGGTATCTCTGCGGCAA+AGG | 0.608261 | 3_4:+25974918 | Msa0496040:intron |
| AGGGTGGATTGAAGGCAAGT+AGG | 0.612427 | 3_4:-25980097 | None:intergenic |
| AGAATTTGCACTTACAACGA+CGG | 0.612960 | 3_4:-25976037 | None:intergenic |
| AATCGGCGGCAGGATCCGTA+AGG | 0.614605 | 3_4:+25974993 | Msa0496040:CDS |
| CTAGTTGGCTCCATTAGGAG+TGG | 0.614630 | 3_4:-25985306 | None:intergenic |
| ACTGGAAGTATATGTTGGTG+AGG | 0.625538 | 3_4:+25985233 | Msa0496040:three_prime_UTR |
| AGAAAACGTACTGGTAAGGG+TGG | 0.625810 | 3_4:-25980113 | None:intergenic |
| GTACATGGCGGATATCTCGC+AGG | 0.628156 | 3_4:+25984544 | Msa0496040:CDS |
| TGATTTGCTTAACATTATAG+CGG | 0.629449 | 3_4:-25974681 | None:intergenic |
| GTTACGGTGATCACGGAAGA+TGG | 0.630346 | 3_4:+25980014 | Msa0496040:CDS |
| ATCCGTAAGGAATGTTTCGG+TGG | 0.632872 | 3_4:+25975006 | Msa0496040:CDS |
| ATCTATGCTCACGAGCGGAG+AGG | 0.634203 | 3_4:+25981452 | Msa0496040:CDS |
| CACCGCCATAGCTTCTCTCA+AGG | 0.636491 | 3_4:-25983541 | None:intergenic |
| TAATGGGGAATCAAAACGCG+TGG | 0.637303 | 3_4:+25983497 | Msa0496040:CDS |
| GCAAAGGTATTAGCCGAGAA+CGG | 0.637672 | 3_4:+25974934 | Msa0496040:CDS |
| GAAGCATCGGACCGAATCGG+CGG | 0.640308 | 3_4:+25974979 | Msa0496040:CDS |
| GAGTCAGCAGCTATTCCACT+CGG | 0.643356 | 3_4:-25975920 | None:intergenic |
| TGAAGACTTTCTCTTCACAT+CGG | 0.644219 | 3_4:+25976921 | Msa0496040:CDS |
| CGATTCTTATAATTTCCAAG+AGG | 0.645431 | 3_4:-25985145 | None:intergenic |
| TCCGGCACCGATGATGATGA+CGG | 0.647002 | 3_4:-25974780 | None:intergenic |
| GACCTTGAGAGAAGCTATGG+CGG | 0.651467 | 3_4:+25983539 | Msa0496040:CDS |
| ATCTTAACAGGTATTGACAC+AGG | 0.654307 | 3_4:+25984902 | Msa0496040:intron |
| TGGTGAGGTTAAGAGGTGAT+GGG | 0.658676 | 3_4:+25985248 | Msa0496040:three_prime_UTR |
| GTATGAGAATCATCATTGCA+TGG | 0.661302 | 3_4:+25985177 | Msa0496040:three_prime_UTR |
| AGTCGTGACATTGACTAATG+GGG | 0.663310 | 3_4:+25983482 | Msa0496040:CDS |
| TCTTCATCTATGCTCACGAG+CGG | 0.668267 | 3_4:+25981447 | Msa0496040:CDS |
| GAAACCTGTTATTCCACCAG+CGG | 0.675023 | 3_4:-25983617 | None:intergenic |
| AGTGGAAAGTTAATTCCGAG+TGG | 0.687576 | 3_4:+25975905 | Msa0496040:intron |
| TGATCGTCTCAAACTCAACA+AGG | 0.693245 | 3_4:+25976960 | Msa0496040:CDS |
| CCTACACAATTATATCTGAG+TGG | 0.695407 | 3_4:+25985070 | Msa0496040:CDS |
| CTGATTTGAAGGTATCTCTG+CGG | 0.702319 | 3_4:+25974912 | Msa0496040:intron |
| GGCACCGATGATGATGACGG+AGG | 0.722923 | 3_4:-25974777 | None:intergenic |
| TTTAATGGATATGTACATGG+CGG | 0.732094 | 3_4:+25984532 | Msa0496040:CDS |
| CAAGTATGTCAATAGCATCG+GGG | 0.762193 | 3_4:-25983590 | None:intergenic |
| TGGAATAACAGGTTTCAGCG+CGG | 0.786015 | 3_4:+25983624 | Msa0496040:CDS |
| AACCTGTTATTCCACCAGCG+GGG | 0.800283 | 3_4:-25983615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTATAATTATTTAA+GGG | - | chr3_4:25981062-25981081 | None:intergenic | 0.0% |
| !! | TTAAAATTTATAATTATTTA+AGG | - | chr3_4:25981063-25981082 | None:intergenic | 0.0% |
| !!! | TTTTTATTTTTATTTTTAAT+AGG | - | chr3_4:25981638-25981657 | None:intergenic | 0.0% |
| !! | AAATAAATAAATAAATATTT+AGG | - | chr3_4:25982822-25982841 | None:intergenic | 0.0% |
| !!! | TTATTTATTTATTTATATTT+TGG | + | chr3_4:25982828-25982847 | Msa0496040:intron | 0.0% |
| !!! | ATTTTATTTATTAGAATCTT+TGG | - | chr3_4:25975760-25975779 | None:intergenic | 10.0% |
| !! | AGAAATTAAATAAAAAAAGT+AGG | - | chr3_4:25975799-25975818 | None:intergenic | 10.0% |
| !! | CTTTATATTGTTAATTAATA+CGG | + | chr3_4:25976177-25976196 | Msa0496040:intron | 10.0% |
| !!! | TTTTGATTACTTTTATTTTA+AGG | + | chr3_4:25977450-25977469 | Msa0496040:intron | 10.0% |
| !!! | AAATTTTATTTTTCTCATTA+GGG | + | chr3_4:25981584-25981603 | Msa0496040:intron | 10.0% |
| !! | TAATAATTAATTCAAAATTG+TGG | + | chr3_4:25982429-25982448 | Msa0496040:intron | 10.0% |
| !! | TTTATAATATTAAGGTAATA+AGG | + | chr3_4:25983688-25983707 | Msa0496040:intron | 10.0% |
| !! | TATTTGATTCATAATTTAAT+GGG | - | chr3_4:25984127-25984146 | None:intergenic | 10.0% |
| !! | TTATTTGATTCATAATTTAA+TGG | - | chr3_4:25984128-25984147 | None:intergenic | 10.0% |
| !! | CTAAAAAGAAAATGAAAAAA+TGG | - | chr3_4:25975208-25975227 | None:intergenic | 15.0% |
| !!! | CTGTTTTTATGATTTTATAT+CGG | + | chr3_4:25975514-25975533 | Msa0496040:intron | 15.0% |
| !! | TAAAAGTAAACATTTCAAAA+AGG | - | chr3_4:25976138-25976157 | None:intergenic | 15.0% |
| !! | AAGTTCAAAATTTGTATTTA+TGG | + | chr3_4:25976614-25976633 | Msa0496040:intron | 15.0% |
| !! | AGTTCAAAATTTGTATTTAT+GGG | + | chr3_4:25976615-25976634 | Msa0496040:intron | 15.0% |
| !!! | GATTTTTACTTTGTTAAAAA+AGG | + | chr3_4:25977019-25977038 | Msa0496040:intron | 15.0% |
| !!! | TGTTAAAAAAGGATTTTTTT+TGG | + | chr3_4:25977030-25977049 | Msa0496040:intron | 15.0% |
| !!! | ATTTTTTTTTACAAGCTAAA+TGG | - | chr3_4:25977106-25977125 | None:intergenic | 15.0% |
| !!! | TATTATTTTATTGAAGAAAG+TGG | - | chr3_4:25977749-25977768 | None:intergenic | 15.0% |
| !! | ACTTTCTTCAATAAAATAAT+AGG | + | chr3_4:25977748-25977767 | Msa0496040:intron | 15.0% |
| !! | TAAAATGAACATATTATGAA+TGG | + | chr3_4:25977924-25977943 | Msa0496040:intron | 15.0% |
| !! | TTGTGTATACAATAAAATAA+TGG | + | chr3_4:25978201-25978220 | Msa0496040:intron | 15.0% |
| !! | TGTGTATACAATAAAATAAT+GGG | + | chr3_4:25978202-25978221 | Msa0496040:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr3_4:25978690-25978709 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr3_4:25978689-25978708 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr3_4:25978468-25978487 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr3_4:25978599-25978618 | Msa0496040:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr3_4:25978689-25978708 | Msa0496040:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr3_4:25978690-25978709 | Msa0496040:intron | 15.0% |
| !! | AAATATAAGAAAGATGTTAT+AGG | - | chr3_4:25978899-25978918 | None:intergenic | 15.0% |
| !! | GTATATCAATAATAATTCAT+TGG | - | chr3_4:25979400-25979419 | None:intergenic | 15.0% |
| !! | TTAAATCTCAAATTCAAATT+CGG | - | chr3_4:25979469-25979488 | None:intergenic | 15.0% |
| !!! | TTTTGAATAATGAAGAAAAA+TGG | - | chr3_4:25979690-25979709 | None:intergenic | 15.0% |
| !! | ACTTAACAAGAATATAAATA+TGG | + | chr3_4:25980912-25980931 | Msa0496040:intron | 15.0% |
| !! | TCATCAAATTAAACAATTAT+GGG | + | chr3_4:25981153-25981172 | Msa0496040:intron | 15.0% |
| !!! | TTGTTTTAAATTTTCCTTAA+TGG | + | chr3_4:25981496-25981515 | Msa0496040:intron | 15.0% |
| !! | AAAATAAAATTTCTTCAAAC+TGG | - | chr3_4:25981576-25981595 | None:intergenic | 15.0% |
| !!! | GAAATTTTATTTTTCTCATT+AGG | + | chr3_4:25981583-25981602 | Msa0496040:intron | 15.0% |
| !!! | AGTATGATTGAAATTTTATA+TGG | - | chr3_4:25981753-25981772 | None:intergenic | 15.0% |
| !!! | ATGATGAATTTTTAACAATT+TGG | + | chr3_4:25982656-25982675 | Msa0496040:intron | 15.0% |
| !!! | TAAAACCAGTTTTTTATATA+TGG | + | chr3_4:25982749-25982768 | Msa0496040:intron | 15.0% |
| !! | TATTATCAATATAAGACAAA+TGG | - | chr3_4:25982916-25982935 | None:intergenic | 15.0% |
| !! | GATAATATTAATTATTTCCT+AGG | + | chr3_4:25982929-25982948 | Msa0496040:intron | 15.0% |
| !!! | AATTGTTTTCTTATTTCATA+TGG | + | chr3_4:25983094-25983113 | Msa0496040:intron | 15.0% |
| !! | ATTATAAAAAACTTTACGAT+TGG | - | chr3_4:25983676-25983695 | None:intergenic | 15.0% |
| !!! | TAGTTTGAAATTTTGATTAT+TGG | - | chr3_4:25984213-25984232 | None:intergenic | 15.0% |
| !!! | ATTGAACTTTTAAAATTGAA+AGG | + | chr3_4:25984401-25984420 | Msa0496040:intron | 15.0% |
| !! | AAAAATGACAATTAACATAA+GGG | - | chr3_4:25984452-25984471 | None:intergenic | 15.0% |
| !! | AAAAAATGACAATTAACATA+AGG | - | chr3_4:25984453-25984472 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTAAATGTTAAA+AGG | - | chr3_4:25984632-25984651 | None:intergenic | 15.0% |
| !! | TAAATTCATATAAATATGTG+AGG | - | chr3_4:25984868-25984887 | None:intergenic | 15.0% |
| !!! | ATGATTTATCGAGTTTTTTT+TGG | + | chr3_4:25975351-25975370 | Msa0496040:intron | 20.0% |
| !!! | AAACTTATTTTTTTTCGTTG+TGG | - | chr3_4:25975421-25975440 | None:intergenic | 20.0% |
| !! | TGAGAAAATAACTAAGTTAT+CGG | - | chr3_4:25975631-25975650 | None:intergenic | 20.0% |
| !!! | AATTTCTTCTTTTTTTCTTC+TGG | + | chr3_4:25975812-25975831 | Msa0496040:intron | 20.0% |
| !!! | ACATAACAAAATCGTTTTAA+CGG | - | chr3_4:25976080-25976099 | None:intergenic | 20.0% |
| !!! | ACTTTTACTTTTACCTTTTT+TGG | + | chr3_4:25976151-25976170 | Msa0496040:intron | 20.0% |
| !! | CAATATAAAGAAACCAAAAA+AGG | - | chr3_4:25976167-25976186 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTGTTACTATTTT+AGG | + | chr3_4:25976207-25976226 | Msa0496040:intron | 20.0% |
| !!! | TAATTATCACTCTTAATTTG+CGG | + | chr3_4:25976308-25976327 | Msa0496040:intron | 20.0% |
| !!! | TAAAAATGAGTTTCTCTTTT+TGG | - | chr3_4:25976454-25976473 | None:intergenic | 20.0% |
| !! | TTATCTACTCAATCAAATTA+TGG | - | chr3_4:25976548-25976567 | None:intergenic | 20.0% |
| !! | ATAATTTGATTGAGTAGATA+AGG | + | chr3_4:25976547-25976566 | Msa0496040:intron | 20.0% |
| !! | TATCCAAATTATCATTGAAA+TGG | - | chr3_4:25976577-25976596 | None:intergenic | 20.0% |
| !! | AAATCTACATATGTAGATAT+TGG | - | chr3_4:25976838-25976857 | None:intergenic | 20.0% |
| !!! | ATATCTACATATGTAGATTT+TGG | + | chr3_4:25976838-25976857 | Msa0496040:CDS | 20.0% |
| !!! | TATCTACATATGTAGATTTT+GGG | + | chr3_4:25976839-25976858 | Msa0496040:CDS | 20.0% |
| !! | TAAAAATCTCAATCAAAGAA+AGG | - | chr3_4:25977007-25977026 | None:intergenic | 20.0% |
| !! | AAGATAACAAAATAGCAAAA+GGG | - | chr3_4:25977160-25977179 | None:intergenic | 20.0% |
| !!! | AAACAATGACAATAACTTTT+AGG | + | chr3_4:25977615-25977634 | Msa0496040:intron | 20.0% |
| !!! | ATTTTTTTTGCTCTCTTTTA+GGG | - | chr3_4:25978013-25978032 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTGCTCTCTTTT+AGG | - | chr3_4:25978014-25978033 | None:intergenic | 20.0% |
| !!! | AATGGTCTAATATTTTAACT+GGG | - | chr3_4:25978064-25978083 | None:intergenic | 20.0% |
| !!! | TAATGGTCTAATATTTTAAC+TGG | - | chr3_4:25978065-25978084 | None:intergenic | 20.0% |
| !!! | ACCATTAAGAAGTTTTTATA+GGG | + | chr3_4:25978078-25978097 | Msa0496040:intron | 20.0% |
| !! | AATGCAGAAAAACAAAATTA+GGG | - | chr3_4:25978305-25978324 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr3_4:25978338-25978357 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr3_4:25978339-25978358 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr3_4:25978433-25978452 | None:intergenic | 20.0% |
| !! | CATAATTAACCCTAAAATAA+TGG | + | chr3_4:25978752-25978771 | Msa0496040:intron | 20.0% |
| !! | AGATAGAAGATATTAATTGT+GGG | - | chr3_4:25979169-25979188 | None:intergenic | 20.0% |
| !!! | AACTATGATTTTATTTTGCA+TGG | + | chr3_4:25979948-25979967 | Msa0496040:intron | 20.0% |
| !!! | ACCAATAATATTTAAGACTA+GGG | - | chr3_4:25980396-25980415 | None:intergenic | 20.0% |
| !!! | AACCAATAATATTTAAGACT+AGG | - | chr3_4:25980397-25980416 | None:intergenic | 20.0% |
| !!! | TAGTCTTAAATATTATTGGT+TGG | + | chr3_4:25980396-25980415 | Msa0496040:intron | 20.0% |
| !!! | AGTCTTAAATATTATTGGTT+GGG | + | chr3_4:25980397-25980416 | Msa0496040:intron | 20.0% |
| !! | GTCATCAAATTAAACAATTA+TGG | + | chr3_4:25981152-25981171 | Msa0496040:intron | 20.0% |
| !!! | TTTCATTATTTTATCCATCA+TGG | - | chr3_4:25981321-25981340 | None:intergenic | 20.0% |
| !! | AACAGAATTAAAATCTCTTA+AGG | + | chr3_4:25981701-25981720 | Msa0496040:intron | 20.0% |
| !!! | TATTCTATTTTTCTGTTTGA+AGG | - | chr3_4:25982094-25982113 | None:intergenic | 20.0% |
| !! | ACTGATAATTAACTCATATT+TGG | - | chr3_4:25982628-25982647 | None:intergenic | 20.0% |
| !! | AACAAAATATACAAATGCTA+TGG | - | chr3_4:25982689-25982708 | None:intergenic | 20.0% |
| !!! | GTTTTATCAATTTTAGTCTT+CGG | - | chr3_4:25982735-25982754 | None:intergenic | 20.0% |
| !! | AATATAAGACAAATGGTAAT+AGG | - | chr3_4:25982909-25982928 | None:intergenic | 20.0% |
| !! | ATATTAATTATTTCCTAGGA+AGG | + | chr3_4:25982933-25982952 | Msa0496040:intron | 20.0% |
| !! | TGAAATAAGAAAACAATTCA+AGG | - | chr3_4:25983092-25983111 | None:intergenic | 20.0% |
| !!! | ACTATAGTTTGAAATATGTT+AGG | - | chr3_4:25983132-25983151 | None:intergenic | 20.0% |
| !! | ACATAATATTGTAATTGTCT+AGG | + | chr3_4:25983371-25983390 | Msa0496040:intron | 20.0% |
| !! | AAGAACAGAAAATATTCAAA+GGG | - | chr3_4:25983765-25983784 | None:intergenic | 20.0% |
| !! | TAAGAACAGAAAATATTCAA+AGG | - | chr3_4:25983766-25983785 | None:intergenic | 20.0% |
| !! | ACCATGTTATATTTAATTCA+GGG | - | chr3_4:25983975-25983994 | None:intergenic | 20.0% |
| !! | AACCATGTTATATTTAATTC+AGG | - | chr3_4:25983976-25983995 | None:intergenic | 20.0% |
| !!! | AAATATAACATGGTTTTGTT+TGG | + | chr3_4:25983981-25984000 | Msa0496040:intron | 20.0% |
| !!! | ACCACAATCTTTTTTATTTT+GGG | - | chr3_4:25984033-25984052 | None:intergenic | 20.0% |
| !! | ATGTTAAATAAAGGACATTT+AGG | - | chr3_4:25984085-25984104 | None:intergenic | 20.0% |
| !! | CAGTATATCATGTTAAATAA+AGG | - | chr3_4:25984094-25984113 | None:intergenic | 20.0% |
| !!! | TTGATGTTACTATCATTTTA+TGG | + | chr3_4:25984149-25984168 | Msa0496040:intron | 20.0% |
| !! | TTACGTGTAAATTTGATATT+TGG | + | chr3_4:25984240-25984259 | Msa0496040:intron | 20.0% |
| !! | AGAATTGGAACAAATTAAAA+GGG | - | chr3_4:25984338-25984357 | None:intergenic | 20.0% |
| !! | AAGAATTGGAACAAATTAAA+AGG | - | chr3_4:25984339-25984358 | None:intergenic | 20.0% |
| !!! | TGTCATTTTTTATATCTTTC+AGG | + | chr3_4:25984462-25984481 | Msa0496040:intron | 20.0% |
| !! | TGTACACAATATTTATTTGA+GGG | - | chr3_4:25984706-25984725 | None:intergenic | 20.0% |
| !! | ATGTACACAATATTTATTTG+AGG | - | chr3_4:25984707-25984726 | None:intergenic | 20.0% |
| !! | TCTTAATGCATTAACAATTA+TGG | - | chr3_4:25984766-25984785 | None:intergenic | 20.0% |
| !! | ATTATAAGAATCGTAATTGA+TGG | + | chr3_4:25985155-25985174 | Msa0496040:three_prime_UTR | 20.0% |
| !! | TCAAAAAAATTTAACCTAGT+TGG | - | chr3_4:25985324-25985343 | None:intergenic | 20.0% |
| !!! | ACTAGGTTAAATTTTTTTGA+AGG | + | chr3_4:25985324-25985343 | Msa0496040:three_prime_UTR | 20.0% |
| !!! | CTAGGTTAAATTTTTTTGAA+GGG | + | chr3_4:25985325-25985344 | Msa0496040:three_prime_UTR | 20.0% |
| !!! | TTTTTTTGAAGGGAATTAAT+TGG | + | chr3_4:25985335-25985354 | Msa0496040:three_prime_UTR | 20.0% |
| !! | ATAAGTAAGATTACAATGTA+AGG | + | chr3_4:25985394-25985413 | Msa0496040:three_prime_UTR | 20.0% |
| ! | AATCAGAAAGAAAAAGAGAA+AGG | - | chr3_4:25974880-25974899 | None:intergenic | 25.0% |
| !!! | TGTTGGTGTTTTATATTACA+CGG | + | chr3_4:25975709-25975728 | Msa0496040:intron | 25.0% |
| !! | GAATAATGAGATTTTTGTTG+TGG | + | chr3_4:25975870-25975889 | Msa0496040:intron | 25.0% |
| ! | AAATTTGTCTTACAATAGCT+CGG | - | chr3_4:25976487-25976506 | None:intergenic | 25.0% |
| ! | CAAATTATCATTGAAATGGT+GGG | - | chr3_4:25976573-25976592 | None:intergenic | 25.0% |
| ! | TTATGGGTTTGAATTGAAAA+TGG | + | chr3_4:25976631-25976650 | Msa0496040:intron | 25.0% |
| ! | TATGGGTTTGAATTGAAAAT+GGG | + | chr3_4:25976632-25976651 | Msa0496040:intron | 25.0% |
| !!! | ATGGGGTTATTTTAAGAAAA+AGG | + | chr3_4:25976650-25976669 | Msa0496040:intron | 25.0% |
| ! | TTTAAGAAAAAGGAAGAAGT+AGG | + | chr3_4:25976660-25976679 | Msa0496040:intron | 25.0% |
| !! | AAGAAGTAGGATAACTTTTT+AGG | + | chr3_4:25976673-25976692 | Msa0496040:intron | 25.0% |
| !! | AGAAGTAGGATAACTTTTTA+GGG | + | chr3_4:25976674-25976693 | Msa0496040:intron | 25.0% |
| !!! | TTTTGTCTCTGTTCTAAAAT+TGG | + | chr3_4:25976773-25976792 | Msa0496040:intron | 25.0% |
| !! | ATCTACATATGTAGATTTTG+GGG | + | chr3_4:25976840-25976859 | Msa0496040:CDS | 25.0% |
| !!! | CGATTACTTGTTATACAAAA+TGG | + | chr3_4:25976897-25976916 | Msa0496040:CDS | 25.0% |
| ! | CAAGATAACAAAATAGCAAA+AGG | - | chr3_4:25977161-25977180 | None:intergenic | 25.0% |
| !!! | TTGTTGACATTTTTTTTCGA+TGG | + | chr3_4:25977346-25977365 | Msa0496040:intron | 25.0% |
| !! | TGGCTTTTAATAAAGATGTA+AGG | - | chr3_4:25977546-25977565 | None:intergenic | 25.0% |
| !!! | AGTTCTGAATATTTCTCTAT+AGG | - | chr3_4:25977586-25977605 | None:intergenic | 25.0% |
| !! | TTTTATTGAAGAAAGTGGTA+TGG | - | chr3_4:25977744-25977763 | None:intergenic | 25.0% |
| ! | AAATAATAGGCAGACTTATT+TGG | + | chr3_4:25977761-25977780 | Msa0496040:intron | 25.0% |
| !!! | ATGGTCTAATATTTTAACTG+GGG | - | chr3_4:25978063-25978082 | None:intergenic | 25.0% |
| !! | GACCATTAAGAAGTTTTTAT+AGG | + | chr3_4:25978077-25978096 | Msa0496040:intron | 25.0% |
| ! | TCCCTATAAAAACTTCTTAA+TGG | - | chr3_4:25978082-25978101 | None:intergenic | 25.0% |
| ! | CAATGCAGAAAAACAAAATT+AGG | - | chr3_4:25978306-25978325 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr3_4:25978627-25978646 | Msa0496040:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr3_4:25978628-25978647 | Msa0496040:intron | 25.0% |
| ! | AGAAAGATGTTATAGGAATT+AGG | - | chr3_4:25978892-25978911 | None:intergenic | 25.0% |
| !!! | TATAGTCCTCTAAAATGTTT+CGG | - | chr3_4:25979129-25979148 | None:intergenic | 25.0% |
| ! | GAGATAGAAGATATTAATTG+TGG | - | chr3_4:25979170-25979189 | None:intergenic | 25.0% |
| !! | TTCTATCTCAATCCATTTTA+AGG | + | chr3_4:25979181-25979200 | Msa0496040:intron | 25.0% |
| ! | AATTTCCCCATTCATATATT+GGG | + | chr3_4:25979342-25979361 | Msa0496040:intron | 25.0% |
| ! | ATCATTTCTAAACTCTTGTA+TGG | + | chr3_4:25979420-25979439 | Msa0496040:intron | 25.0% |
| ! | ATTCAAGGAAAGATTTACTA+CGG | - | chr3_4:25979764-25979783 | None:intergenic | 25.0% |
| ! | TCTCATGAGATATTATTGTT+TGG | + | chr3_4:25979818-25979837 | Msa0496040:intron | 25.0% |
| ! | CTCATGAGATATTATTGTTT+GGG | + | chr3_4:25979819-25979838 | Msa0496040:intron | 25.0% |
| !! | TATTTTGCATGGAATTATAC+AGG | + | chr3_4:25979959-25979978 | Msa0496040:intron | 25.0% |
| !!! | CTTTTCCTTTATTTACTCTA+AGG | + | chr3_4:25980147-25980166 | Msa0496040:intron | 25.0% |
| !! | CAATAATATTTAAGACTAGG+GGG | - | chr3_4:25980394-25980413 | None:intergenic | 25.0% |
| !! | CCAATAATATTTAAGACTAG+GGG | - | chr3_4:25980395-25980414 | None:intergenic | 25.0% |
| !!! | TTGTATTAAATTTAGCTCTC+TGG | + | chr3_4:25980450-25980469 | Msa0496040:intron | 25.0% |
| ! | TGTAAATTGACCAATTAAGT+TGG | - | chr3_4:25980623-25980642 | None:intergenic | 25.0% |
| !! | CTTGTTAAGTTTAAAACTAG+TGG | - | chr3_4:25980902-25980921 | None:intergenic | 25.0% |
| ! | TTGTTACATGTTATTCATCT+AGG | + | chr3_4:25980972-25980991 | Msa0496040:intron | 25.0% |
| ! | AATGTACTTGATCAAATGTA+TGG | + | chr3_4:25981111-25981130 | Msa0496040:intron | 25.0% |
| ! | GGGATTATGATATATTATTG+AGG | + | chr3_4:25981173-25981192 | Msa0496040:intron | 25.0% |
| ! | CTAAAACACAAATAAGTTCA+TGG | - | chr3_4:25981212-25981231 | None:intergenic | 25.0% |
| ! | CTATTAATAACATCACTGAA+GGG | - | chr3_4:25981247-25981266 | None:intergenic | 25.0% |
| ! | ACTATTAATAACATCACTGA+AGG | - | chr3_4:25981248-25981267 | None:intergenic | 25.0% |
| ! | ATAAAATAATGAAACAGAGC+TGG | + | chr3_4:25981327-25981346 | Msa0496040:intron | 25.0% |
| !! | ATAGATGAAGAATTCCTTTT+CGG | - | chr3_4:25981438-25981457 | None:intergenic | 25.0% |
| !!! | TAATTTTAGGTGAAGTTCTA+TGG | + | chr3_4:25981660-25981679 | Msa0496040:intron | 25.0% |
| !!! | AATTTTAGGTGAAGTTCTAT+GGG | + | chr3_4:25981661-25981680 | Msa0496040:intron | 25.0% |
| ! | AAATCTCTTAAGGATGTATT+TGG | + | chr3_4:25981711-25981730 | Msa0496040:intron | 25.0% |
| !!! | TTTTGTTTGTATACCCTTAT+TGG | + | chr3_4:25982453-25982472 | Msa0496040:intron | 25.0% |
| ! | TTTGTTTGTATACCCTTATT+GGG | + | chr3_4:25982454-25982473 | Msa0496040:intron | 25.0% |
| !! | TTGTATATTTTGTTCTTGTC+CGG | + | chr3_4:25982695-25982714 | Msa0496040:intron | 25.0% |
| !!! | AACCAGTTTTTTATATATGG+AGG | + | chr3_4:25982752-25982771 | Msa0496040:intron | 25.0% |
| ! | TTCCTCCATATATAAAAAAC+TGG | - | chr3_4:25982757-25982776 | None:intergenic | 25.0% |
| ! | GAATTATACAGCAAGAAATT+TGG | + | chr3_4:25983180-25983199 | Msa0496040:intron | 25.0% |
| !! | ACAATATTATGTTTCTGTGT+TGG | - | chr3_4:25983363-25983382 | None:intergenic | 25.0% |
| ! | AAATCAACAGATAAGTGATT+TGG | - | chr3_4:25983415-25983434 | None:intergenic | 25.0% |
| ! | AGAACAGAAAATATTCAAAG+GGG | - | chr3_4:25983764-25983783 | None:intergenic | 25.0% |
| ! | TCCCTGAATTAAATATAACA+TGG | + | chr3_4:25983971-25983990 | Msa0496040:intron | 25.0% |
| !!! | CCACAATCTTTTTTATTTTG+GGG | - | chr3_4:25984032-25984051 | None:intergenic | 25.0% |
| !!! | GACCACAATCTTTTTTATTT+TGG | - | chr3_4:25984034-25984053 | None:intergenic | 25.0% |
| ! | AATAAAAAAGATTGTGGTCA+AGG | + | chr3_4:25984035-25984054 | Msa0496040:intron | 25.0% |
| ! | GGAATTTCAAACATAATAGA+TGG | + | chr3_4:25984261-25984280 | Msa0496040:intron | 25.0% |
| ! | TCCAATTCTTTAGTAGTATT+AGG | + | chr3_4:25984349-25984368 | Msa0496040:intron | 25.0% |
| ! | ATATCCATTAAATCTTTCAC+TGG | - | chr3_4:25984524-25984543 | None:intergenic | 25.0% |
| !! | AGATTTAATGGATATGTACA+TGG | + | chr3_4:25984529-25984548 | Msa0496040:CDS | 25.0% |
| !! | TTTCAAGACTGTATTTCTAA+TGG | + | chr3_4:25984576-25984595 | Msa0496040:intron | 25.0% |
| ! | TAAAGAAAAACCATCTAAAG+TGG | + | chr3_4:25984641-25984660 | Msa0496040:intron | 25.0% |
| ! | CAATTATGGTAAACAAGTAT+TGG | - | chr3_4:25984752-25984771 | None:intergenic | 25.0% |
| ! | TATAAATATGTGAGGTCTTT+GGG | - | chr3_4:25984860-25984879 | None:intergenic | 25.0% |
| ! | ATATAAATATGTGAGGTCTT+TGG | - | chr3_4:25984861-25984880 | None:intergenic | 25.0% |
| ! | AACTCCATATAGTCATAATA+TGG | - | chr3_4:25985116-25985135 | None:intergenic | 25.0% |
| ! | TAGATTGATTGACAAAATAC+TGG | + | chr3_4:25985215-25985234 | Msa0496040:three_prime_UTR | 25.0% |
| !! | AAAATACTGGAAGTATATGT+TGG | + | chr3_4:25985228-25985247 | Msa0496040:three_prime_UTR | 25.0% |
| ! | CTTGTATTGCAAGTAAAATT+AGG | - | chr3_4:25985443-25985462 | None:intergenic | 25.0% |
| !! | CTCTATTTTCTCTGATTTGA+AGG | + | chr3_4:25974901-25974920 | Msa0496040:intron | 30.0% |
| ! | TTGTATTTGAGTCTTGTGTT+TGG | + | chr3_4:25975673-25975692 | Msa0496040:intron | 30.0% |
| ! | TGTATTTGAGTCTTGTGTTT+GGG | + | chr3_4:25975674-25975693 | Msa0496040:intron | 30.0% |
| ATAAAACACCAACACATACA+CGG | - | chr3_4:25975703-25975722 | None:intergenic | 30.0% | |
| !! | TAATGAGATTTTTGTTGTGG+TGG | + | chr3_4:25975873-25975892 | Msa0496040:intron | 30.0% |
| ATCATGCAGAATGAAATCAA+TGG | - | chr3_4:25976258-25976277 | None:intergenic | 30.0% | |
| !! | CATTCTGCATGATTTTGAAA+TGG | + | chr3_4:25976265-25976284 | Msa0496040:CDS | 30.0% |
| ! | GTTGACTTTCCAATTTCAAT+GGG | - | chr3_4:25976430-25976449 | None:intergenic | 30.0% |
| ! | AGTTGACTTTCCAATTTCAA+TGG | - | chr3_4:25976431-25976450 | None:intergenic | 30.0% |
| CCAAATTATCATTGAAATGG+TGG | - | chr3_4:25976574-25976593 | None:intergenic | 30.0% | |
| CCACCATTTCAATGATAATT+TGG | + | chr3_4:25976571-25976590 | Msa0496040:intron | 30.0% | |
| ATGGGTTTGAATTGAAAATG+GGG | + | chr3_4:25976633-25976652 | Msa0496040:intron | 30.0% | |
| AATCACAATCACAATCACAA+TGG | - | chr3_4:25976701-25976720 | None:intergenic | 30.0% | |
| TGAAAAACTTTAAGCAGAAG+TGG | + | chr3_4:25976810-25976829 | Msa0496040:intron | 30.0% | |
| !!! | GGAAAGAGAATTTTTAGTTG+CGG | + | chr3_4:25976861-25976880 | Msa0496040:CDS | 30.0% |
| TACTGACATATAAACAGGTA+GGG | - | chr3_4:25977057-25977076 | None:intergenic | 30.0% | |
| TGAGTTCGATCTAAATTTGA+TGG | - | chr3_4:25977249-25977268 | None:intergenic | 30.0% | |
| CAAATTTAGATCGAACTCAT+AGG | + | chr3_4:25977250-25977269 | Msa0496040:intron | 30.0% | |
| TTCACGAAAACAAATGTATG+GGG | - | chr3_4:25977428-25977447 | None:intergenic | 30.0% | |
| CTTCACGAAAACAAATGTAT+GGG | - | chr3_4:25977429-25977448 | None:intergenic | 30.0% | |
| ACTTCACGAAAACAAATGTA+TGG | - | chr3_4:25977430-25977449 | None:intergenic | 30.0% | |
| ! | TTTTTCTCATACCTCTCAAA+GGG | + | chr3_4:25977663-25977682 | Msa0496040:intron | 30.0% |
| !!! | TCTTTATTTTTCCCTTTGAG+AGG | - | chr3_4:25977677-25977696 | None:intergenic | 30.0% |
| !!! | ATGATTTTTTCCCACATACA+TGG | - | chr3_4:25977833-25977852 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr3_4:25978721-25978740 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr3_4:25978720-25978739 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | - | chr3_4:25978565-25978584 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr3_4:25978720-25978739 | Msa0496040:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr3_4:25978721-25978740 | Msa0496040:intron | 30.0% |
| !! | GATCAGTCTCCATTATTTTA+GGG | - | chr3_4:25978764-25978783 | None:intergenic | 30.0% |
| ! | AGATCAGTCTCCATTATTTT+AGG | - | chr3_4:25978765-25978784 | None:intergenic | 30.0% |
| ! | AAAAGGACAGACTTTTTGAA+CGG | - | chr3_4:25978839-25978858 | None:intergenic | 30.0% |
| CTTTCTTATATTTGTACGTG+AGG | + | chr3_4:25978906-25978925 | Msa0496040:intron | 30.0% | |
| !! | ATTTTAGAGGACTATAGTAC+AGG | + | chr3_4:25979133-25979152 | Msa0496040:intron | 30.0% |
| ATGAGTAAAAGGCCTTAAAA+TGG | - | chr3_4:25979196-25979215 | None:intergenic | 30.0% | |
| !! | CCTACTGATTTATGAGTAAA+AGG | - | chr3_4:25979207-25979226 | None:intergenic | 30.0% |
| ! | CCTTTTACTCATAAATCAGT+AGG | + | chr3_4:25979204-25979223 | Msa0496040:intron | 30.0% |
| GTAACTGAAATTGGAACTTT+GGG | - | chr3_4:25979231-25979250 | None:intergenic | 30.0% | |
| CAATTTCCCCATTCATATAT+TGG | + | chr3_4:25979341-25979360 | Msa0496040:intron | 30.0% | |
| TATGACCCAATATATGAATG+GGG | - | chr3_4:25979350-25979369 | None:intergenic | 30.0% | |
| CTATGACCCAATATATGAAT+GGG | - | chr3_4:25979351-25979370 | None:intergenic | 30.0% | |
| ACTATGACCCAATATATGAA+TGG | - | chr3_4:25979352-25979371 | None:intergenic | 30.0% | |
| AAATCTTTCCTTGAATTCAG+TGG | + | chr3_4:25979768-25979787 | Msa0496040:intron | 30.0% | |
| ! | AATTCAGTGGTTGATTTCAA+GGG | + | chr3_4:25979781-25979800 | Msa0496040:intron | 30.0% |
| CAAAAACAATTGCAGTCAAA+TGG | - | chr3_4:25979863-25979882 | None:intergenic | 30.0% | |
| GAATTGCAACATTCAAGAAA+TGG | + | chr3_4:25979990-25980009 | Msa0496040:CDS | 30.0% | |
| ! | ACATTCAAGAAATGGTGTTA+CGG | + | chr3_4:25979998-25980017 | Msa0496040:CDS | 30.0% |
| AACAGACAGAATCACATAAT+TGG | - | chr3_4:25980054-25980073 | None:intergenic | 30.0% | |
| TATGTATTGAGAAAACGTAC+TGG | - | chr3_4:25980125-25980144 | None:intergenic | 30.0% | |
| CCACATCATACAATATTCTA+CGG | - | chr3_4:25980198-25980217 | None:intergenic | 30.0% | |
| CGTAGAATATTGTATGATGT+GGG | + | chr3_4:25980196-25980215 | Msa0496040:intron | 30.0% | |
| ATGATGTGGGATACATTTAT+TGG | + | chr3_4:25980209-25980228 | Msa0496040:intron | 30.0% | |
| GGTTCTTTCTGTCTATAATA+CGG | + | chr3_4:25980338-25980357 | Msa0496040:intron | 30.0% | |
| GTTCTTTCTGTCTATAATAC+GGG | + | chr3_4:25980339-25980358 | Msa0496040:intron | 30.0% | |
| !! | CCCCTAGTCTTAAATATTAT+TGG | + | chr3_4:25980392-25980411 | Msa0496040:intron | 30.0% |
| TTGGGAATGTAAAGAAATGT+AGG | + | chr3_4:25980415-25980434 | Msa0496040:intron | 30.0% | |
| TGGGAATGTAAAGAAATGTA+GGG | + | chr3_4:25980416-25980435 | Msa0496040:intron | 30.0% | |
| CAATCATGTCAACAATTGTA+AGG | - | chr3_4:25980685-25980704 | None:intergenic | 30.0% | |
| TGTAGCTAATCTTGAATATC+TGG | + | chr3_4:25980803-25980822 | Msa0496040:intron | 30.0% | |
| AATAACATGTAACAACAGGT+TGG | - | chr3_4:25980967-25980986 | None:intergenic | 30.0% | |
| GATGAATAACATGTAACAAC+AGG | - | chr3_4:25980971-25980990 | None:intergenic | 30.0% | |
| AGTCATGGTACATAATTACA+TGG | + | chr3_4:25980998-25981017 | Msa0496040:intron | 30.0% | |
| CTTTAGACCTTAGCTAATAA+GGG | - | chr3_4:25981024-25981043 | None:intergenic | 30.0% | |
| ATGGAATTACCAATGATATG+AGG | + | chr3_4:25981130-25981149 | Msa0496040:intron | 30.0% | |
| ! | ATTTGATGACCTCATATCAT+TGG | - | chr3_4:25981142-25981161 | None:intergenic | 30.0% |
| CTGATTCAATAATTCCATGA+TGG | + | chr3_4:25981304-25981323 | Msa0496040:intron | 30.0% | |
| CATTACATCACATTTCTCAA+TGG | - | chr3_4:25981363-25981382 | None:intergenic | 30.0% | |
| CATTGAGAAATGTGATGTAA+TGG | + | chr3_4:25981361-25981380 | Msa0496040:CDS | 30.0% | |
| ! | TAGATGAAGAATTCCTTTTC+GGG | - | chr3_4:25981437-25981456 | None:intergenic | 30.0% |
| AAAAGAACTGACAACCATTA+AGG | - | chr3_4:25981513-25981532 | None:intergenic | 30.0% | |
| !!! | TGGTTGTCAGTTCTTTTTTT+AGG | + | chr3_4:25981516-25981535 | Msa0496040:intron | 30.0% |
| ! | ACAGAGAATAACTTAGCTTT+AGG | + | chr3_4:25981609-25981628 | Msa0496040:intron | 30.0% |
| !! | GTGTAAATGAATGTTTTGGA+CGG | - | chr3_4:25981791-25981810 | None:intergenic | 30.0% |
| ! | GACAGTGTAAATGAATGTTT+TGG | - | chr3_4:25981795-25981814 | None:intergenic | 30.0% |
| ! | ACAGTGCAAATGAATGTTTT+GGG | - | chr3_4:25981849-25981868 | None:intergenic | 30.0% |
| TTAAGATTCGACGTCTTTAT+AGG | - | chr3_4:25981972-25981991 | None:intergenic | 30.0% | |
| TATAAAGACGTCGAATCTTA+AGG | + | chr3_4:25981971-25981990 | Msa0496040:intron | 30.0% | |
| GTATTTAAATCCATAGCATC+AGG | - | chr3_4:25982284-25982303 | None:intergenic | 30.0% | |
| TTGTTTGTATACCCTTATTG+GGG | + | chr3_4:25982455-25982474 | Msa0496040:intron | 30.0% | |
| TCTGTATACCATATGTGAAA+TGG | + | chr3_4:25982530-25982549 | Msa0496040:intron | 30.0% | |
| AGAAACTTCCATTTCACATA+TGG | - | chr3_4:25982541-25982560 | None:intergenic | 30.0% | |
| CAATTTATAATGAGCGCATT+AGG | - | chr3_4:25982578-25982597 | None:intergenic | 30.0% | |
| TTCGGTTATATGAATTGTAC+CGG | - | chr3_4:25982717-25982736 | None:intergenic | 30.0% | |
| !! | GTTGTAATTTTGACCTTCTT+AGG | + | chr3_4:25982852-25982871 | Msa0496040:intron | 30.0% |
| ! | ATATCTTTGTTATCCTTCCT+AGG | - | chr3_4:25982949-25982968 | None:intergenic | 30.0% |
| ! | TATTTGCTAACAGTAGTAAG+AGG | - | chr3_4:25982983-25983002 | None:intergenic | 30.0% |
| AATTTACACAGAAAACTCCA+AGG | - | chr3_4:25983052-25983071 | None:intergenic | 30.0% | |
| AGTCAATGCATTATTGCATA+GGG | - | chr3_4:25983243-25983262 | None:intergenic | 30.0% | |
| AAGTCAATGCATTATTGCAT+AGG | - | chr3_4:25983244-25983263 | None:intergenic | 30.0% | |
| !! | ATGCAATAATGCATTGACTT+TGG | + | chr3_4:25983244-25983263 | Msa0496040:intron | 30.0% |
| ACTTTGGATCTAAACTTATG+TGG | + | chr3_4:25983260-25983279 | Msa0496040:intron | 30.0% | |
| AACAAGTATGTCAATAGCAT+CGG | - | chr3_4:25983595-25983614 | None:intergenic | 30.0% | |
| ACTTTACGATTGGAGATAAT+CGG | - | chr3_4:25983666-25983685 | None:intergenic | 30.0% | |
| CCCCAAAATAAAAAAGATTG+TGG | + | chr3_4:25984029-25984048 | Msa0496040:intron | 30.0% | |
| AAAAGACAGCATAGGAAATT+AGG | - | chr3_4:25984302-25984321 | None:intergenic | 30.0% | |
| ! | TAATTTCCTATGCTGTCTTT+TGG | + | chr3_4:25984301-25984320 | Msa0496040:intron | 30.0% |
| GCCTAATACTACTAAAGAAT+TGG | - | chr3_4:25984353-25984372 | None:intergenic | 30.0% | |
| ! | TTTAATGGATATGTACATGG+CGG | + | chr3_4:25984532-25984551 | Msa0496040:CDS | 30.0% |
| ! | ACTGTATTTCTAATGGTTGA+TGG | + | chr3_4:25984583-25984602 | Msa0496040:intron | 30.0% |
| ATACCAAATTTCATAGCAAG+TGG | + | chr3_4:25984606-25984625 | Msa0496040:intron | 30.0% | |
| ATAAGTTACCATCTATGCTT+TGG | - | chr3_4:25984830-25984849 | None:intergenic | 30.0% | |
| ATAAATATGTGAGGTCTTTG+GGG | - | chr3_4:25984859-25984878 | None:intergenic | 30.0% | |
| ACCTGTTAAGATTTCAAGAA+GGG | - | chr3_4:25984894-25984913 | None:intergenic | 30.0% | |
| TACCTGTTAAGATTTCAAGA+AGG | - | chr3_4:25984895-25984914 | None:intergenic | 30.0% | |
| AAGCCTTAGTAGAAGAAATA+AGG | + | chr3_4:25984927-25984946 | Msa0496040:CDS | 30.0% | |
| ! | CTTCCTTATTTCTTCTACTA+AGG | - | chr3_4:25984933-25984952 | None:intergenic | 30.0% |
| AATATCGCATTTGTGGATAT+TGG | - | chr3_4:25985050-25985069 | None:intergenic | 30.0% | |
| ATAGTCATAATATGGCTTCT+GGG | - | chr3_4:25985108-25985127 | None:intergenic | 30.0% | |
| TATAGTCATAATATGGCTTC+TGG | - | chr3_4:25985109-25985128 | None:intergenic | 30.0% | |
| GAAGCCATATTATGACTATA+TGG | + | chr3_4:25985109-25985128 | Msa0496040:exon | 30.0% | |
| CGATTCTTATAATTTCCAAG+AGG | - | chr3_4:25985148-25985167 | None:intergenic | 30.0% | |
| AATAATTGAGAAACGCGTTG+CGG | - | chr3_4:25974857-25974876 | None:intergenic | 35.0% | |
| GCTTCAACATCTATGATCAA+AGG | + | chr3_4:25975151-25975170 | Msa0496040:CDS | 35.0% | |
| TTTATATCGGAAAGTAGCTG+CGG | + | chr3_4:25975527-25975546 | Msa0496040:intron | 35.0% | |
| ! | GGTGTTTGTATGATAGTGTT+TGG | - | chr3_4:25975610-25975629 | None:intergenic | 35.0% |
| ! | GTTGCTCTGTTTTGTGATTT+TGG | + | chr3_4:25975848-25975867 | Msa0496040:intron | 35.0% |
| !! | TGCTGACTCATACAAAAAAG+CGG | + | chr3_4:25975934-25975953 | Msa0496040:CDS | 35.0% |
| AGAATTTGCACTTACAACGA+CGG | - | chr3_4:25976040-25976059 | None:intergenic | 35.0% | |
| !!! | ATGATTTTGAAATGGCAGGT+AGG | + | chr3_4:25976273-25976292 | Msa0496040:intron | 35.0% |
| ! | TGCTGAAAAGTGATAATGTG+AGG | - | chr3_4:25976345-25976364 | None:intergenic | 35.0% |
| !! | CACATTATCACTTTTCAGCA+TGG | + | chr3_4:25976345-25976364 | Msa0496040:intron | 35.0% |
| !!! | TTTTTAGTTGCGGATGAAAG+AGG | + | chr3_4:25976871-25976890 | Msa0496040:CDS | 35.0% |
| !! | TTTTAGTTGCGGATGAAAGA+GGG | + | chr3_4:25976872-25976891 | Msa0496040:CDS | 35.0% |
| TGAAGACTTTCTCTTCACAT+CGG | + | chr3_4:25976921-25976940 | Msa0496040:CDS | 35.0% | |
| ACTGACATATAAACAGGTAG+GGG | - | chr3_4:25977056-25977075 | None:intergenic | 35.0% | |
| ! | GTACTGACATATAAACAGGT+AGG | - | chr3_4:25977058-25977077 | None:intergenic | 35.0% |
| TTTATATGTCAGTACCCTGT+TGG | + | chr3_4:25977063-25977082 | Msa0496040:intron | 35.0% | |
| TAGATCGAACTCATAGGATT+TGG | + | chr3_4:25977256-25977275 | Msa0496040:intron | 35.0% | |
| AAGCCATGACAAAAACTTTC+AGG | + | chr3_4:25977560-25977579 | Msa0496040:intron | 35.0% | |
| ! | GTTTTTCTCATACCTCTCAA+AGG | + | chr3_4:25977662-25977681 | Msa0496040:intron | 35.0% |
| AAGTAGGGACTAAACTTACA+AGG | - | chr3_4:25978705-25978724 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr3_4:25978705-25978724 | Msa0496040:intron | 35.0% | |
| TTTCACATGCTTGCAGATTT+GGG | - | chr3_4:25978794-25978813 | None:intergenic | 35.0% | |
| GATGTTATAGGAATTAGGTC+AGG | - | chr3_4:25978887-25978906 | None:intergenic | 35.0% | |
| TCTTATATTTGTACGTGAGG+TGG | + | chr3_4:25978909-25978928 | Msa0496040:intron | 35.0% | |
| CTTATATTTGTACGTGAGGT+GGG | + | chr3_4:25978910-25978929 | Msa0496040:intron | 35.0% | |
| TTATATTTGTACGTGAGGTG+GGG | + | chr3_4:25978911-25978930 | Msa0496040:intron | 35.0% | |
| TGCTTACTAGTATTCAAACG+TGG | - | chr3_4:25979042-25979061 | None:intergenic | 35.0% | |
| ACGTTTGAATACTAGTAAGC+AGG | + | chr3_4:25979041-25979060 | Msa0496040:intron | 35.0% | |
| GACTATCTGCTACATATTCA+TGG | + | chr3_4:25979083-25979102 | Msa0496040:intron | 35.0% | |
| ! | CAAATGCCGAAACATTTTAG+AGG | + | chr3_4:25979120-25979139 | Msa0496040:intron | 35.0% |
| GGTAACTGAAATTGGAACTT+TGG | - | chr3_4:25979232-25979251 | None:intergenic | 35.0% | |
| ! | AGTGTACTGGTAACTGAAAT+TGG | - | chr3_4:25979240-25979259 | None:intergenic | 35.0% |
| GACATATCACCATAGATCAT+TGG | - | chr3_4:25979281-25979300 | None:intergenic | 35.0% | |
| TAAGTTTCAATAGCAGCTCA+TGG | + | chr3_4:25979504-25979523 | Msa0496040:intron | 35.0% | |
| AAGTTTCAATAGCAGCTCAT+GGG | + | chr3_4:25979505-25979524 | Msa0496040:intron | 35.0% | |
| AACTCCAATAAATCTGCAAC+AGG | + | chr3_4:25979710-25979729 | Msa0496040:intron | 35.0% | |
| ACTCCAATAAATCTGCAACA+GGG | + | chr3_4:25979711-25979730 | Msa0496040:intron | 35.0% | |
| GAAATCAACCACTGAATTCA+AGG | - | chr3_4:25979779-25979798 | None:intergenic | 35.0% | |
| ! | GAATTCAGTGGTTGATTTCA+AGG | + | chr3_4:25979780-25979799 | Msa0496040:intron | 35.0% |
| !!! | CAATTGTTTTTGTCCTGTCA+CGG | + | chr3_4:25979871-25979890 | Msa0496040:intron | 35.0% |
| TTCTTGAATGTTGCAATTCC+CGG | - | chr3_4:25979989-25980008 | None:intergenic | 35.0% | |
| ! | TTGAGAAAACGTACTGGTAA+GGG | - | chr3_4:25980119-25980138 | None:intergenic | 35.0% |
| ! | ATTGAGAAAACGTACTGGTA+AGG | - | chr3_4:25980120-25980139 | None:intergenic | 35.0% |
| CCGTAGAATATTGTATGATG+TGG | + | chr3_4:25980195-25980214 | Msa0496040:intron | 35.0% | |
| ! | AGATTCCATTTTCACCATGT+TGG | - | chr3_4:25980310-25980329 | None:intergenic | 35.0% |
| ATGGTGAAAATGGAATCTCT+AGG | + | chr3_4:25980312-25980331 | Msa0496040:intron | 35.0% | |
| AAAGAAATGTAGGGATAGCT+AGG | + | chr3_4:25980425-25980444 | Msa0496040:intron | 35.0% | |
| TGTCTTCATATGCATAAACC+AGG | + | chr3_4:25980503-25980522 | Msa0496040:intron | 35.0% | |
| GTCTTCATATGCATAAACCA+GGG | + | chr3_4:25980504-25980523 | Msa0496040:intron | 35.0% | |
| TCTTCATATGCATAAACCAG+GGG | + | chr3_4:25980505-25980524 | Msa0496040:intron | 35.0% | |
| AGACATCAACAATGAGACTA+TGG | - | chr3_4:25980557-25980576 | None:intergenic | 35.0% | |
| GAAGAGAACACCAACTTAAT+TGG | + | chr3_4:25980610-25980629 | Msa0496040:intron | 35.0% | |
| CTTCTCAAAAATCACGAGTA+TGG | - | chr3_4:25980856-25980875 | None:intergenic | 35.0% | |
| !! | ATTTTTGAGAAGCCTGGATT+AGG | + | chr3_4:25980864-25980883 | Msa0496040:intron | 35.0% |
| ATATGGCCTAAACCACTTAA+TGG | + | chr3_4:25980929-25980948 | Msa0496040:intron | 35.0% | |
| TATGGCCTAAACCACTTAAT+GGG | + | chr3_4:25980930-25980949 | Msa0496040:intron | 35.0% | |
| TATTCATCTAGGCTAAGTCA+TGG | + | chr3_4:25980983-25981002 | Msa0496040:intron | 35.0% | |
| CCTTTAGACCTTAGCTAATA+AGG | - | chr3_4:25981025-25981044 | None:intergenic | 35.0% | |
| CCTTATTAGCTAAGGTCTAA+AGG | + | chr3_4:25981022-25981041 | Msa0496040:intron | 35.0% | |
| TATTTAAGGGGTCATGAAAC+AGG | - | chr3_4:25981049-25981068 | None:intergenic | 35.0% | |
| !! | TCTTTCTGAAGTTTCCGTAT+AGG | + | chr3_4:25981396-25981415 | Msa0496040:CDS | 35.0% |
| ! | TGAAGTTTCCGTATAGGTTT+TGG | + | chr3_4:25981402-25981421 | Msa0496040:CDS | 35.0% |
| !! | TAAATGAATGTTTTGGACGG+AGG | - | chr3_4:25981788-25981807 | None:intergenic | 35.0% |
| ! | GACAGTGCAAATGAATGTTT+TGG | - | chr3_4:25981850-25981869 | None:intergenic | 35.0% |
| ! | ATCTTAAGGCATTAAGTGCA+TGG | + | chr3_4:25981985-25982004 | Msa0496040:intron | 35.0% |
| CTGTTTGAAGGCAAAGTTAT+TGG | - | chr3_4:25982082-25982101 | None:intergenic | 35.0% | |
| AATGTTCAACTTGATCCGTA+AGG | - | chr3_4:25982168-25982187 | None:intergenic | 35.0% | |
| AAACTATTGTCCTGATGCTA+TGG | + | chr3_4:25982271-25982290 | Msa0496040:intron | 35.0% | |
| TTAGTGTTTAGCCCCAATAA+GGG | - | chr3_4:25982469-25982488 | None:intergenic | 35.0% | |
| ATTATCATGTGTGCCTAAGA+AGG | - | chr3_4:25982868-25982887 | None:intergenic | 35.0% | |
| GTTGCAATGTTGATATTCCT+TGG | + | chr3_4:25983032-25983051 | Msa0496040:intron | 35.0% | |
| ! | TGTATTGGCAAGAATGGAAA+TGG | - | chr3_4:25983216-25983235 | None:intergenic | 35.0% |
| ATTGCATAGGGTTTGTGTAT+TGG | - | chr3_4:25983231-25983250 | None:intergenic | 35.0% | |
| GTGTTGGATGAATAAGCAAA+AGG | - | chr3_4:25983347-25983366 | None:intergenic | 35.0% | |
| ! | ATTTGTTTGTTACCAGCACA+TGG | + | chr3_4:25983431-25983450 | Msa0496040:intron | 35.0% |
| CAATGTCACGACTAAGATAT+TGG | - | chr3_4:25983475-25983494 | None:intergenic | 35.0% | |
| ! | TTAGTCGTGACATTGACTAA+TGG | + | chr3_4:25983480-25983499 | Msa0496040:CDS | 35.0% |
| ! | TAGTCGTGACATTGACTAAT+GGG | + | chr3_4:25983481-25983500 | Msa0496040:CDS | 35.0% |
| ACAAGTATGTCAATAGCATC+GGG | - | chr3_4:25983594-25983613 | None:intergenic | 35.0% | |
| AGTGCATGCAAAGACAAAAT+AGG | + | chr3_4:25983826-25983845 | Msa0496040:intron | 35.0% | |
| AGACAAAATAGGTAATGACC+TGG | + | chr3_4:25983837-25983856 | Msa0496040:intron | 35.0% | |
| TTCCTATTCATCAATGAGCT+GGG | - | chr3_4:25984178-25984197 | None:intergenic | 35.0% | |
| TTTCCTATTCATCAATGAGC+TGG | - | chr3_4:25984179-25984198 | None:intergenic | 35.0% | |
| ! | AATAGATGGTGTTTTGCTTG+TGG | + | chr3_4:25984275-25984294 | Msa0496040:intron | 35.0% |
| TGAAAACCAAAAGACAGCAT+AGG | - | chr3_4:25984310-25984329 | None:intergenic | 35.0% | |
| CACACCAGTGAAAGATTTAA+TGG | + | chr3_4:25984517-25984536 | Msa0496040:CDS | 35.0% | |
| !! | ACCATCTAAAGTGGCATTTT+AGG | + | chr3_4:25984650-25984669 | Msa0496040:intron | 35.0% |
| !! | ACCTAAAATGCCACTTTAGA+TGG | - | chr3_4:25984654-25984673 | None:intergenic | 35.0% |
| ATTTACTGCCAAAGCATAGA+TGG | + | chr3_4:25984819-25984838 | Msa0496040:intron | 35.0% | |
| TCCCTTCTTGAAATCTTAAC+AGG | + | chr3_4:25984890-25984909 | Msa0496040:intron | 35.0% | |
| !! | ATCTTAACAGGTATTGACAC+AGG | + | chr3_4:25984902-25984921 | Msa0496040:intron | 35.0% |
| TGAAAGCCAAACTCTATTGT+TGG | + | chr3_4:25984970-25984989 | Msa0496040:CDS | 35.0% | |
| AAGGTTCCAACAATAGAGTT+TGG | - | chr3_4:25984979-25984998 | None:intergenic | 35.0% | |
| CCACTCAGATATAATTGTGT+AGG | - | chr3_4:25985073-25985092 | None:intergenic | 35.0% | |
| CCTACACAATTATATCTGAG+TGG | + | chr3_4:25985070-25985089 | Msa0496040:CDS | 35.0% | |
| GTATGAGAATCATCATTGCA+TGG | + | chr3_4:25985177-25985196 | Msa0496040:three_prime_UTR | 35.0% | |
| ! | TATATGTTGGTGAGGTTAAG+AGG | + | chr3_4:25985241-25985260 | Msa0496040:three_prime_UTR | 35.0% |
| TTAGTTCATTCCACTCCTAA+TGG | + | chr3_4:25985296-25985315 | Msa0496040:three_prime_UTR | 35.0% | |
| CTCTTCTCTCACACATTTCA+TGG | + | chr3_4:25974739-25974758 | Msa0496040:CDS | 40.0% | |
| !! | CTGATTTGAAGGTATCTCTG+CGG | + | chr3_4:25974912-25974931 | Msa0496040:intron | 40.0% |
| TATGTCTTCTACACCGTTCT+CGG | - | chr3_4:25974950-25974969 | None:intergenic | 40.0% | |
| CATAGTGATCCTTGAAGCAT+CGG | + | chr3_4:25974966-25974985 | Msa0496040:CDS | 40.0% | |
| AGGATCCGTAAGGAATGTTT+CGG | + | chr3_4:25975003-25975022 | Msa0496040:CDS | 40.0% | |
| TCGTGAAGCTAATCCTGTTT+GGG | + | chr3_4:25975074-25975093 | Msa0496040:CDS | 40.0% | |
| ACACTTTCCATCAGAATGGT+CGG | - | chr3_4:25975555-25975574 | None:intergenic | 40.0% | |
| GGAAACACTTTCCATCAGAA+TGG | - | chr3_4:25975559-25975578 | None:intergenic | 40.0% | |
| !! | TGGAAAGTGTTTCCGACATT+AGG | + | chr3_4:25975565-25975584 | Msa0496040:intron | 40.0% |
| CACAAATACGTGCCTAATGT+CGG | - | chr3_4:25975580-25975599 | None:intergenic | 40.0% | |
| AGTGGAAAGTTAATTCCGAG+TGG | + | chr3_4:25975905-25975924 | Msa0496040:intron | 40.0% | |
| GATGATGAAGCCAATGATGA+TGG | + | chr3_4:25975998-25976017 | Msa0496040:CDS | 40.0% | |
| ! | TGCTTTGTTGCCATCATCAT+TGG | - | chr3_4:25976011-25976030 | None:intergenic | 40.0% |
| AGGCGTCCTAAAATAGTAAC+AGG | - | chr3_4:25976216-25976235 | None:intergenic | 40.0% | |
| AAATCAATGGCGAGTTCTAC+TGG | - | chr3_4:25976245-25976264 | None:intergenic | 40.0% | |
| !!! | CTGCATGATTTTGAAATGGC+AGG | + | chr3_4:25976269-25976288 | Msa0496040:CDS | 40.0% |
| GATCGAACTCTGAATTAGCA+TGG | + | chr3_4:25976397-25976416 | Msa0496040:intron | 40.0% | |
| TGATCGTCTCAAACTCAACA+AGG | + | chr3_4:25976960-25976979 | Msa0496040:CDS | 40.0% | |
| !! | CAGGGTACTGACATATAAAC+AGG | - | chr3_4:25977062-25977081 | None:intergenic | 40.0% |
| ! | AGGCCTGAAAGTTTTTGTCA+TGG | - | chr3_4:25977566-25977585 | None:intergenic | 40.0% |
| AGGCAGACTTATTTGGTTGA+AGG | + | chr3_4:25977768-25977787 | Msa0496040:intron | 40.0% | |
| GGCAGACTTATTTGGTTGAA+GGG | + | chr3_4:25977769-25977788 | Msa0496040:intron | 40.0% | |
| TTCACATGCTTGCAGATTTG+GGG | - | chr3_4:25978793-25978812 | None:intergenic | 40.0% | |
| GTTTCACATGCTTGCAGATT+TGG | - | chr3_4:25978795-25978814 | None:intergenic | 40.0% | |
| TATATTTGTACGTGAGGTGG+GGG | + | chr3_4:25978912-25978931 | Msa0496040:intron | 40.0% | |
| CGTCAATTCAAACAGTGTAC+TGG | - | chr3_4:25979253-25979272 | None:intergenic | 40.0% | |
| GACGCAATTCCAATGATCTA+TGG | + | chr3_4:25979269-25979288 | Msa0496040:intron | 40.0% | |
| AGTTTCAATAGCAGCTCATG+GGG | + | chr3_4:25979506-25979525 | Msa0496040:intron | 40.0% | |
| CAAGGAAAGATTTACTACGG+AGG | - | chr3_4:25979761-25979780 | None:intergenic | 40.0% | |
| AGTAAAATGAACTCCGTGAC+AGG | - | chr3_4:25979887-25979906 | None:intergenic | 40.0% | |
| ! | GTCACGGAGTTCATTTTACT+AGG | + | chr3_4:25979887-25979906 | Msa0496040:intron | 40.0% |
| ! | ACGGAGTTCATTTTACTAGG+CGG | + | chr3_4:25979890-25979909 | Msa0496040:intron | 40.0% |
| GGTAGAATCTTCTTCATCAC+TGG | + | chr3_4:25979911-25979930 | Msa0496040:intron | 40.0% | |
| ATGGAATTATACAGGTCGTC+CGG | + | chr3_4:25979967-25979986 | Msa0496040:intron | 40.0% | |
| !! | AAATGGTGTTACGGTGATCA+CGG | + | chr3_4:25980007-25980026 | Msa0496040:CDS | 40.0% |
| GTGATTCTGTCTGTTAGCAT+TGG | + | chr3_4:25980059-25980078 | Msa0496040:CDS | 40.0% | |
| GGGCTCCTTAGAGTAAATAA+AGG | - | chr3_4:25980155-25980174 | None:intergenic | 40.0% | |
| !! | ATAGCTTGCTTGATTACACG+GGG | - | chr3_4:25980175-25980194 | None:intergenic | 40.0% |
| !! | GATAGCTTGCTTGATTACAC+GGG | - | chr3_4:25980176-25980195 | None:intergenic | 40.0% |
| !! | GGATAGCTTGCTTGATTACA+CGG | - | chr3_4:25980177-25980196 | None:intergenic | 40.0% |
| TGGGATACATTTATTGGTCC+CGG | + | chr3_4:25980215-25980234 | Msa0496040:intron | 40.0% | |
| ATTTATTGGTCCCGGATATG+TGG | + | chr3_4:25980223-25980242 | Msa0496040:intron | 40.0% | |
| TTGAGAACTTGTCACCAACA+TGG | + | chr3_4:25980293-25980312 | Msa0496040:intron | 40.0% | |
| TGTCACCAACATGGTGAAAA+TGG | + | chr3_4:25980302-25980321 | Msa0496040:intron | 40.0% | |
| GAAAATGGAATCTCTAGGTG+TGG | + | chr3_4:25980317-25980336 | Msa0496040:intron | 40.0% | |
| AAAGGGAAATTCCTGCTGTA+GGG | - | chr3_4:25980366-25980385 | None:intergenic | 40.0% | |
| AAAAGGGAAATTCCTGCTGT+AGG | - | chr3_4:25980367-25980386 | None:intergenic | 40.0% | |
| TTGATGTCTATTAGCCCTCT+TGG | + | chr3_4:25980568-25980587 | Msa0496040:intron | 40.0% | |
| ATGGCCTAAACCACTTAATG+GGG | + | chr3_4:25980931-25980950 | Msa0496040:intron | 40.0% | |
| TACATGGCCCTTATTAGCTA+AGG | + | chr3_4:25981014-25981033 | Msa0496040:intron | 40.0% | |
| CGGAAACTTCAGAAAGATCT+TGG | - | chr3_4:25981393-25981412 | None:intergenic | 40.0% | |
| ! | GGAGAGGCTATTACACATTT+TGG | + | chr3_4:25981468-25981487 | Msa0496040:CDS | 40.0% |
| !! | AGGCTATTACACATTTTGGC+AGG | + | chr3_4:25981472-25981491 | Msa0496040:CDS | 40.0% |
| !! | TGCAAATGAATGTTTTGGGC+GGG | - | chr3_4:25981845-25981864 | None:intergenic | 40.0% |
| !! | GTGCAAATGAATGTTTTGGG+CGG | - | chr3_4:25981846-25981865 | None:intergenic | 40.0% |
| ! | GTCAATTTTGCTTCTCGTCA+TGG | + | chr3_4:25982124-25982143 | Msa0496040:intron | 40.0% |
| TCAACTTGATCCGTAAGGTT+AGG | - | chr3_4:25982163-25982182 | None:intergenic | 40.0% | |
| GCTTCATCTTAATCTTCTGC+TGG | + | chr3_4:25982344-25982363 | Msa0496040:intron | 40.0% | |
| TCTGCTGGCAATAGAATTTG+CGG | + | chr3_4:25982359-25982378 | Msa0496040:intron | 40.0% | |
| CTTAGTGTTTAGCCCCAATA+AGG | - | chr3_4:25982470-25982489 | None:intergenic | 40.0% | |
| CTTATTGGGGCTAAACACTA+AGG | + | chr3_4:25982468-25982487 | Msa0496040:intron | 40.0% | |
| !! | TACAGCAAGAAATTTGGTGC+AGG | + | chr3_4:25983186-25983205 | Msa0496040:intron | 40.0% |
| ! | GGTTTGTGTATTGGCAAGAA+TGG | - | chr3_4:25983222-25983241 | None:intergenic | 40.0% |
| GATATGCATTATCCATGTGC+TGG | - | chr3_4:25983446-25983465 | None:intergenic | 40.0% | |
| CACATGGATAATGCATATCC+CGG | + | chr3_4:25983447-25983466 | Msa0496040:CDS | 40.0% | |
| ! | AGTCGTGACATTGACTAATG+GGG | + | chr3_4:25983482-25983501 | Msa0496040:CDS | 40.0% |
| TTCTCTCAAGGTCTCTTCAT+CGG | - | chr3_4:25983532-25983551 | None:intergenic | 40.0% | |
| CAAGTATGTCAATAGCATCG+GGG | - | chr3_4:25983593-25983612 | None:intergenic | 40.0% | |
| TCCTATTCATCAATGAGCTG+GGG | - | chr3_4:25984177-25984196 | None:intergenic | 40.0% | |
| TATATCTTTCAGGCTCCTGT+TGG | + | chr3_4:25984472-25984491 | Msa0496040:intron | 40.0% | |
| !! | AGGCCACTTGCTATGAAATT+TGG | - | chr3_4:25984612-25984631 | None:intergenic | 40.0% |
| TGGATATTGGAGACTGTTTC+TGG | - | chr3_4:25985037-25985056 | None:intergenic | 40.0% | |
| GTGTAGGAATATCGCATTTG+TGG | - | chr3_4:25985057-25985076 | None:intergenic | 40.0% | |
| TTATATCTGAGTGGCAAGCT+TGG | + | chr3_4:25985079-25985098 | Msa0496040:CDS | 40.0% | |
| ! | ACTGGAAGTATATGTTGGTG+AGG | + | chr3_4:25985233-25985252 | Msa0496040:three_prime_UTR | 40.0% |
| ! | TTAACCTAGTTGGCTCCATT+AGG | - | chr3_4:25985314-25985333 | None:intergenic | 40.0% |
| !! | GCAAAGGTATTAGCCGAGAA+CGG | + | chr3_4:25974934-25974953 | Msa0496040:CDS | 45.0% |
| ATCCGTAAGGAATGTTTCGG+TGG | + | chr3_4:25975006-25975025 | Msa0496040:CDS | 45.0% | |
| GTCGTGAAGCTAATCCTGTT+TGG | + | chr3_4:25975073-25975092 | Msa0496040:CDS | 45.0% | |
| CTCAGTGCTGTATTCGCTTA+CGG | + | chr3_4:25975287-25975306 | Msa0496040:intron | 45.0% | |
| GCTGTATTCGCTTACGGTTA+CGG | + | chr3_4:25975293-25975312 | Msa0496040:intron | 45.0% | |
| TTAGCTGAAACGACGTCGTT+TGG | + | chr3_4:25975482-25975501 | Msa0496040:intron | 45.0% | |
| TTGTGGTGGTTGCAATGTAG+TGG | + | chr3_4:25975887-25975906 | Msa0496040:intron | 45.0% | |
| GGTCTCGTTCCCATTGAAAT+TGG | + | chr3_4:25976418-25976437 | Msa0496040:intron | 45.0% | |
| GACTTTCTCTTCACATCGGA+AGG | + | chr3_4:25976925-25976944 | Msa0496040:CDS | 45.0% | |
| CACATCGGAAGGTAGAATCT+TGG | + | chr3_4:25976936-25976955 | Msa0496040:CDS | 45.0% | |
| AGCAAACAGACAAGCCAACA+GGG | - | chr3_4:25977080-25977099 | None:intergenic | 45.0% | |
| AAGCAAACAGACAAGCCAAC+AGG | - | chr3_4:25977081-25977100 | None:intergenic | 45.0% | |
| ATGATCAGCTGCCATGTATG+TGG | + | chr3_4:25977819-25977838 | Msa0496040:intron | 45.0% | |
| TGATCAGCTGCCATGTATGT+GGG | + | chr3_4:25977820-25977839 | Msa0496040:intron | 45.0% | |
| ATATTTGTACGTGAGGTGGG+GGG | + | chr3_4:25978913-25978932 | Msa0496040:intron | 45.0% | |
| CGACCCTGTTGCAGATTTAT+TGG | - | chr3_4:25979717-25979736 | None:intergenic | 45.0% | |
| GATTTACTACGGAGGAACCT+GGG | - | chr3_4:25979753-25979772 | None:intergenic | 45.0% | |
| AGATTTACTACGGAGGAACC+TGG | - | chr3_4:25979754-25979773 | None:intergenic | 45.0% | |
| TGGAATTATACAGGTCGTCC+GGG | + | chr3_4:25979968-25979987 | Msa0496040:intron | 45.0% | |
| !! | TACTGGTAAGGGTGGATTGA+AGG | - | chr3_4:25980108-25980127 | None:intergenic | 45.0% |
| ! | AGAAAACGTACTGGTAAGGG+TGG | - | chr3_4:25980116-25980135 | None:intergenic | 45.0% |
| ! | CAGCAGGAATTTCCCTTTTG+TGG | + | chr3_4:25980368-25980387 | Msa0496040:intron | 45.0% |
| CGCTAGAAAGTAGAGTTTCG+AGG | + | chr3_4:25980480-25980499 | Msa0496040:intron | 45.0% | |
| CATATGCATAAACCAGGGGA+TGG | + | chr3_4:25980509-25980528 | Msa0496040:intron | 45.0% | |
| ACTATGGATCACTGATACCG+TGG | - | chr3_4:25980541-25980560 | None:intergenic | 45.0% | |
| GTCTATTAGCCCTCTTGGAT+AGG | + | chr3_4:25980573-25980592 | Msa0496040:intron | 45.0% | |
| ACGTGTCAACCTATCCAAGA+GGG | - | chr3_4:25980585-25980604 | None:intergenic | 45.0% | |
| !! | CTCGTGATTTTTGAGAAGCC+TGG | + | chr3_4:25980858-25980877 | Msa0496040:intron | 45.0% |
| ! | CAGAGCATTAGTCCTAATCC+AGG | - | chr3_4:25980879-25980898 | None:intergenic | 45.0% |
| TGGCCTAAACCACTTAATGG+GGG | + | chr3_4:25980932-25980951 | Msa0496040:intron | 45.0% | |
| TACCCCCCATTAAGTGGTTT+AGG | - | chr3_4:25980938-25980957 | None:intergenic | 45.0% | |
| TAAACCACTTAATGGGGGGT+AGG | + | chr3_4:25980937-25980956 | Msa0496040:intron | 45.0% | |
| CCACATGGCCAAAACCTATA+CGG | - | chr3_4:25981413-25981432 | None:intergenic | 45.0% | |
| !!! | AATTCCTTTTCGGGTCCACA+TGG | - | chr3_4:25981428-25981447 | None:intergenic | 45.0% |
| TCTTCATCTATGCTCACGAG+CGG | + | chr3_4:25981447-25981466 | Msa0496040:CDS | 45.0% | |
| !! | CAAATGAATGTTTTGGGCGG+GGG | - | chr3_4:25981843-25981862 | None:intergenic | 45.0% |
| !! | GCAAATGAATGTTTTGGGCG+GGG | - | chr3_4:25981844-25981863 | None:intergenic | 45.0% |
| ACTGAGTCATAATACGACCC+AGG | + | chr3_4:25981921-25981940 | Msa0496040:intron | 45.0% | |
| CTGAGTCATAATACGACCCA+GGG | + | chr3_4:25981922-25981941 | Msa0496040:intron | 45.0% | |
| TGAGTCATAATACGACCCAG+GGG | + | chr3_4:25981923-25981942 | Msa0496040:intron | 45.0% | |
| GTTAAACGAGATGATCCCCT+GGG | - | chr3_4:25981941-25981960 | None:intergenic | 45.0% | |
| AGTTAAACGAGATGATCCCC+TGG | - | chr3_4:25981942-25981961 | None:intergenic | 45.0% | |
| TGAAACGTCTAACGCACACT+TGG | + | chr3_4:25982052-25982071 | Msa0496040:intron | 45.0% | |
| ! | TTGCCGCTTACCTAACCTTA+CGG | + | chr3_4:25982150-25982169 | Msa0496040:intron | 45.0% |
| GATCCGTAAGGTTAGGTAAG+CGG | - | chr3_4:25982156-25982175 | None:intergenic | 45.0% | |
| CAGCTTGCATAAATCAGGGA+GGG | - | chr3_4:25982798-25982817 | None:intergenic | 45.0% | |
| AGGCCAGCTTGCATAAATCA+GGG | - | chr3_4:25982802-25982821 | None:intergenic | 45.0% | |
| TAGGCCAGCTTGCATAAATC+AGG | - | chr3_4:25982803-25982822 | None:intergenic | 45.0% | |
| GGTAATAGGTGTAGCTGATC+AGG | - | chr3_4:25982895-25982914 | None:intergenic | 45.0% | |
| ACGACTAAGATATTGGAGCC+GGG | - | chr3_4:25983468-25983487 | None:intergenic | 45.0% | |
| CACGACTAAGATATTGGAGC+CGG | - | chr3_4:25983469-25983488 | None:intergenic | 45.0% | |
| TAATGGGGAATCAAAACGCG+TGG | + | chr3_4:25983497-25983516 | Msa0496040:CDS | 45.0% | |
| AGAGACCTTGAGAGAAGCTA+TGG | + | chr3_4:25983536-25983555 | Msa0496040:CDS | 45.0% | |
| ! | TCAATAGCATCGGGGATGTT+GGG | - | chr3_4:25983585-25983604 | None:intergenic | 45.0% |
| AAACCTGTTATTCCACCAGC+GGG | - | chr3_4:25983619-25983638 | None:intergenic | 45.0% | |
| GAAACCTGTTATTCCACCAG+CGG | - | chr3_4:25983620-25983639 | None:intergenic | 45.0% | |
| TGGAATAACAGGTTTCAGCG+CGG | + | chr3_4:25983624-25983643 | Msa0496040:CDS | 45.0% | |
| AATAGCAAGCTGTAAGCTCC+AGG | - | chr3_4:25983858-25983877 | None:intergenic | 45.0% | |
| GTGAAGAAAATGCGACCAAC+AGG | - | chr3_4:25984490-25984509 | None:intergenic | 45.0% | |
| ! | GTTGGTCGCATTTTCTTCAC+CGG | + | chr3_4:25984490-25984509 | Msa0496040:CDS | 45.0% |
| !! | GAACCTTTGCTAGCATTGAC+AGG | + | chr3_4:25984992-25985011 | Msa0496040:CDS | 45.0% |
| GATCCTGTCAATGCTAGCAA+AGG | - | chr3_4:25984998-25985017 | None:intergenic | 45.0% | |
| GGAGTTGTAGAGAATCCTCT+TGG | + | chr3_4:25985130-25985149 | Msa0496040:three_prime_UTR | 45.0% | |
| CATCATTGCATGGTGAGTCA+TGG | + | chr3_4:25985187-25985206 | Msa0496040:three_prime_UTR | 45.0% | |
| TTGGTGAGGTTAAGAGGTGA+TGG | + | chr3_4:25985247-25985266 | Msa0496040:three_prime_UTR | 45.0% | |
| TGGTGAGGTTAAGAGGTGAT+GGG | + | chr3_4:25985248-25985267 | Msa0496040:three_prime_UTR | 45.0% | |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | + | chr3_4:25978660-25978679 | Msa0496040:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | + | chr3_4:25978661-25978680 | Msa0496040:intron | 5.0% |
| !! | TATCAAAAATAAAATAAAAA+AGG | - | chr3_4:25978856-25978875 | None:intergenic | 5.0% |
| !!! | TTGAATATAATTTTTTTTTT+TGG | - | chr3_4:25979635-25979654 | None:intergenic | 5.0% |
| !! | AAAATTTATAATTATTTAAG+GGG | - | chr3_4:25981061-25981080 | None:intergenic | 5.0% |
| !!! | AAAAATAAAAACTTAATTTT+AGG | + | chr3_4:25981647-25981666 | Msa0496040:intron | 5.0% |
| !! | AGTATAATATTATTATAAAT+TGG | + | chr3_4:25983149-25983168 | Msa0496040:intron | 5.0% |
| !!! | TAAAGTTTTTTATAATATTA+AGG | + | chr3_4:25983680-25983699 | Msa0496040:CDS | 5.0% |
| GCGAAAGTTACCGGAGATTC+CGG | - | chr3_4:25974801-25974820 | None:intergenic | 50.0% | |
| TTGTGGAGGGGAGATGTGAA+TGG | - | chr3_4:25974831-25974850 | None:intergenic | 50.0% | |
| AATTGAGAAACGCGTTGCGG+TGG | - | chr3_4:25974854-25974873 | None:intergenic | 50.0% | |
| !! | TGAAGGTATCTCTGCGGCAA+AGG | + | chr3_4:25974918-25974937 | Msa0496040:intron | 50.0% |
| !! | CTTGAAGCATCGGACCGAAT+CGG | + | chr3_4:25974976-25974995 | Msa0496040:CDS | 50.0% |
| CGCCACCGAAACATTCCTTA+CGG | - | chr3_4:25975011-25975030 | None:intergenic | 50.0% | |
| TCAACAGCGAGTTCCCAAAC+AGG | - | chr3_4:25975090-25975109 | None:intergenic | 50.0% | |
| TTGGGTGTCCGTGTATGTGT+TGG | + | chr3_4:25975692-25975711 | Msa0496040:intron | 50.0% | |
| GAGTCAGCAGCTATTCCACT+CGG | - | chr3_4:25975923-25975942 | None:intergenic | 50.0% | |
| GTTACGGTGATCACGGAAGA+TGG | + | chr3_4:25980014-25980033 | Msa0496040:CDS | 50.0% | |
| !! | AGGGTGGATTGAAGGCAAGT+AGG | - | chr3_4:25980100-25980119 | None:intergenic | 50.0% |
| ! | ATATCAGCGTGAGAAGCACG+AGG | - | chr3_4:25980252-25980271 | None:intergenic | 50.0% |
| ATAATACGGGTCCCTACAGC+AGG | + | chr3_4:25980352-25980371 | Msa0496040:intron | 50.0% | |
| AAGACTAGGGGGCCACAAAA+GGG | - | chr3_4:25980383-25980402 | None:intergenic | 50.0% | |
| TAAGACTAGGGGGCCACAAA+AGG | - | chr3_4:25980384-25980403 | None:intergenic | 50.0% | |
| CACGTGTCAACCTATCCAAG+AGG | - | chr3_4:25980586-25980605 | None:intergenic | 50.0% | |
| ! | CTCTTGGATAGGTTGACACG+TGG | + | chr3_4:25980584-25980603 | Msa0496040:intron | 50.0% |
| GGCCTAAACCACTTAATGGG+GGG | + | chr3_4:25980933-25980952 | Msa0496040:intron | 50.0% | |
| TTCTCCTACCCCCCATTAAG+TGG | - | chr3_4:25980944-25980963 | None:intergenic | 50.0% | |
| !! | CCGTATAGGTTTTGGCCATG+TGG | + | chr3_4:25981410-25981429 | Msa0496040:CDS | 50.0% |
| !! | ATGTTTTGGACGGAGGAGAG+AGG | - | chr3_4:25981781-25981800 | None:intergenic | 50.0% |
| CACTGTCGTCGATACTCACT+CGG | + | chr3_4:25981808-25981827 | Msa0496040:intron | 50.0% | |
| CACTGTCGTCGATACTCACT+CGG | + | chr3_4:25981808-25981827 | Msa0496040:intron | 50.0% | |
| CCAGCTTGCATAAATCAGGG+AGG | - | chr3_4:25982799-25982818 | None:intergenic | 50.0% | |
| CCTCCCTGATTTATGCAAGC+TGG | + | chr3_4:25982796-25982815 | Msa0496040:intron | 50.0% | |
| GACCTTGAGAGAAGCTATGG+CGG | + | chr3_4:25983539-25983558 | Msa0496040:CDS | 50.0% | |
| ! | GTCAATAGCATCGGGGATGT+TGG | - | chr3_4:25983586-25983605 | None:intergenic | 50.0% |
| TTGACATACTTGTTCCCCGC+TGG | + | chr3_4:25983601-25983620 | Msa0496040:CDS | 50.0% | |
| AACCTGTTATTCCACCAGCG+GGG | - | chr3_4:25983618-25983637 | None:intergenic | 50.0% | |
| GCCCCAGCTCATTGATGAAT+AGG | + | chr3_4:25984173-25984192 | Msa0496040:intron | 50.0% | |
| TCTTTCACTGGTGTGCTCTC+CGG | - | chr3_4:25984512-25984531 | None:intergenic | 50.0% | |
| ! | CTAGTTGGCTCCATTAGGAG+TGG | - | chr3_4:25985309-25985328 | None:intergenic | 50.0% |
| CACTCCTAATGGAGCCAACT+AGG | + | chr3_4:25985307-25985326 | Msa0496040:three_prime_UTR | 50.0% | |
| !! | GATGACGGAGGAGCGATTAG+AGG | - | chr3_4:25974768-25974787 | None:intergenic | 55.0% |
| CGCTCCTCCGTCATCATCAT+CGG | + | chr3_4:25974773-25974792 | Msa0496040:CDS | 55.0% | |
| TCCGTCATCATCATCGGTGC+CGG | + | chr3_4:25974779-25974798 | Msa0496040:CDS | 55.0% | |
| !! | TCCGGCACCGATGATGATGA+CGG | - | chr3_4:25974783-25974802 | None:intergenic | 55.0% |
| !! | ATCATCGGTGCCGGAATCTC+CGG | + | chr3_4:25974788-25974807 | Msa0496040:CDS | 55.0% |
| ! | GGTGTGGTGGCGAAAGTTAC+CGG | - | chr3_4:25974810-25974829 | None:intergenic | 55.0% |
| GGGAGATGTGAATGGTGTGG+TGG | - | chr3_4:25974823-25974842 | None:intergenic | 55.0% | |
| GAGGGGAGATGTGAATGGTG+TGG | - | chr3_4:25974826-25974845 | None:intergenic | 55.0% | |
| !! | CGATTCGGTCCGATGCTTCA+AGG | - | chr3_4:25974978-25974997 | None:intergenic | 55.0% |
| GGAATGTTTCGGTGGCGTGT+CGG | + | chr3_4:25975014-25975033 | Msa0496040:CDS | 55.0% | |
| TCCAACACCAGCGATCCAAC+CGG | - | chr3_4:25975052-25975071 | None:intergenic | 55.0% | |
| GCGAGTTCTACTGGCGTCTT+AGG | - | chr3_4:25976236-25976255 | None:intergenic | 55.0% | |
| GTCGTACTCGATGTCTACCC+AGG | + | chr3_4:25979733-25979752 | Msa0496040:intron | 55.0% | |
| TTGGCCATGTGGACCCGAAA+AGG | + | chr3_4:25981421-25981440 | Msa0496040:CDS | 55.0% | |
| ATCTATGCTCACGAGCGGAG+AGG | + | chr3_4:25981452-25981471 | Msa0496040:CDS | 55.0% | |
| CACCGCCATAGCTTCTCTCA+AGG | - | chr3_4:25983544-25983563 | None:intergenic | 55.0% | |
| AGAAGCTATGGCGGTGCTCA+GGG | + | chr3_4:25983548-25983567 | Msa0496040:CDS | 55.0% | |
| GCGGTGCTCAGGGATATGTT+TGG | + | chr3_4:25983558-25983577 | Msa0496040:CDS | 55.0% | |
| ACATACTTGTTCCCCGCTGG+TGG | + | chr3_4:25983604-25983623 | Msa0496040:CDS | 55.0% | |
| TTCCCCGCTGGTGGAATAAC+AGG | + | chr3_4:25983613-25983632 | Msa0496040:CDS | 55.0% | |
| !! | GTACATGGCGGATATCTCGC+AGG | + | chr3_4:25984544-25984563 | Msa0496040:CDS | 55.0% |
| !! | GGCACCGATGATGATGACGG+AGG | - | chr3_4:25974780-25974799 | None:intergenic | 60.0% |
| GAAACGCGTTGCGGTGGTTG+TGG | - | chr3_4:25974848-25974867 | None:intergenic | 60.0% | |
| !! | GAAGCATCGGACCGAATCGG+CGG | + | chr3_4:25974979-25974998 | Msa0496040:CDS | 60.0% |
| ! | TACGGATCCTGCCGCCGATT+CGG | - | chr3_4:25974993-25975012 | None:intergenic | 60.0% |
| AATCGGCGGCAGGATCCGTA+AGG | + | chr3_4:25974993-25975012 | Msa0496040:CDS | 60.0% | |
| ATGTTTCGGTGGCGTGTCGG+TGG | + | chr3_4:25975017-25975036 | Msa0496040:CDS | 60.0% | |
| ! | GGTTGGATCGCTGGTGTTGG+AGG | + | chr3_4:25975051-25975070 | Msa0496040:CDS | 60.0% |
| !! | TGCGGCACCGACCATTCTGA+TGG | + | chr3_4:25975545-25975564 | Msa0496040:intron | 60.0% |
| CACGAGGTGGCCACATATCC+GGG | - | chr3_4:25980236-25980255 | None:intergenic | 60.0% | |
| GCACGAGGTGGCCACATATC+CGG | - | chr3_4:25980237-25980256 | None:intergenic | 60.0% | |
| ! | TCAGCGTGAGAAGCACGAGG+TGG | - | chr3_4:25980249-25980268 | None:intergenic | 60.0% |
| CCAGGGGATGGCATGATCCA+CGG | + | chr3_4:25980521-25980540 | Msa0496040:intron | 60.0% | |
| GAGAAGCTATGGCGGTGCTC+AGG | + | chr3_4:25983547-25983566 | Msa0496040:CDS | 60.0% | |
| GCGTTGCGGTGGTTGTGGAG+GGG | - | chr3_4:25974843-25974862 | None:intergenic | 65.0% | |
| CGCGTTGCGGTGGTTGTGGA+GGG | - | chr3_4:25974844-25974863 | None:intergenic | 65.0% | |
| ACGCGTTGCGGTGGTTGTGG+AGG | - | chr3_4:25974845-25974864 | None:intergenic | 65.0% | |
| ! | GGTGGCGTGTCGGTGGAACT+CGG | + | chr3_4:25975024-25975043 | Msa0496040:CDS | 65.0% |
| !! | GTGTCGGTGGAACTCGGTGC+CGG | + | chr3_4:25975030-25975049 | Msa0496040:CDS | 65.0% |
| GCCGGTTGGATCGCTGGTGT+TGG | + | chr3_4:25975048-25975067 | Msa0496040:CDS | 65.0% | |
| CCGTGGATCATGCCATCCCC+TGG | - | chr3_4:25980524-25980543 | None:intergenic | 65.0% | |
| CATCGGACCGAATCGGCGGC+AGG | + | chr3_4:25974983-25975002 | Msa0496040:CDS | 70.0% | |
| !! | CGGTGGAACTCGGTGCCGGT+TGG | + | chr3_4:25975034-25975053 | Msa0496040:CDS | 70.0% |
| !! | CTCGGTGCCGGTTGGATCGC+TGG | + | chr3_4:25975042-25975061 | Msa0496040:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 25974682 | 25985477 | 25974682 | ID=Msa0496040;Name=Msa0496040 |
| chr3_4 | mRNA | 25974682 | 25985477 | 25974682 | ID=Msa0496040-mRNA-1;Parent=Msa0496040;Name=Msa0496040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=7|1|1|1|1|1|10|354|522 |
| chr3_4 | exon | 25974682 | 25974809 | 25974682 | ID=Msa0496040-mRNA-1:exon:6245;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25974923 | 25975172 | 25974923 | ID=Msa0496040-mRNA-1:exon:6246;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25975907 | 25976044 | 25975907 | ID=Msa0496040-mRNA-1:exon:6247;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25976229 | 25976290 | 25976229 | ID=Msa0496040-mRNA-1:exon:6248;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25976827 | 25976981 | 25976827 | ID=Msa0496040-mRNA-1:exon:6249;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25979981 | 25980124 | 25979981 | ID=Msa0496040-mRNA-1:exon:6250;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25981344 | 25981493 | 25981344 | ID=Msa0496040-mRNA-1:exon:6251;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25983447 | 25983701 | 25983447 | ID=Msa0496040-mRNA-1:exon:6252;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25984484 | 25984565 | 25984484 | ID=Msa0496040-mRNA-1:exon:6253;Parent=Msa0496040-mRNA-1 |
| chr3_4 | exon | 25984912 | 25985477 | 25984912 | ID=Msa0496040-mRNA-1:exon:6254;Parent=Msa0496040-mRNA-1 |
| chr3_4 | five_prime_UTR | 25974682 | 25974688 | 25974682 | ID=Msa0496040-mRNA-1:five_prime_utr;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25974689 | 25974809 | 25974689 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25974923 | 25975172 | 25974923 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25975907 | 25976044 | 25975907 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25976229 | 25976290 | 25976229 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25976827 | 25976981 | 25976827 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25979981 | 25980124 | 25979981 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25981344 | 25981493 | 25981344 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25983447 | 25983701 | 25983447 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25984484 | 25984565 | 25984484 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | CDS | 25984912 | 25985123 | 25984912 | ID=Msa0496040-mRNA-1:cds;Parent=Msa0496040-mRNA-1 |
| chr3_4 | three_prime_UTR | 25985124 | 25985477 | 25985124 | ID=Msa0496040-mRNA-1:three_prime_utr;Parent=Msa0496040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
