AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0672950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672950 MtrunA17_Chr4g0013581 98.225 507 9 0 1 507 1 507 0.0 1021
Msa0672950 MtrunA17_Chr4g0013591 82.941 510 80 2 1 504 1 509 0.0 850
Msa0672950 MtrunA17_Chr8g0353161 70.120 502 146 2 6 504 8 508 0.0 722
Msa0672950 MtrunA17_Chr8g0353141 70.120 502 146 3 6 504 8 508 0.0 719
Msa0672950 MtrunA17_Chr5g0435421 67.123 511 161 2 1 504 1 511 0.0 678
Msa0672950 MtrunA17_Chr5g0437201 65.825 515 160 3 6 504 8 522 0.0 665
Msa0672950 MtrunA17_Chr8g0356471 44.747 514 267 6 10 507 9 521 3.91e-166 480
Msa0672950 MtrunA17_Chr2g0319001 31.323 514 327 8 7 501 17 523 9.43e-81 261
Msa0672950 MtrunA17_Chr4g0067801 47.032 219 112 2 154 371 1 216 6.36e-61 199
Msa0672950 MtrunA17_Chr4g0042131 29.167 384 259 6 132 507 43 421 1.62e-45 164
Msa0672950 MtrunA17_Chr2g0319011 29.904 311 194 6 205 496 3 308 2.59e-31 123
Msa0672950 MtrunA17_Chr2g0319021 34.862 109 71 0 25 133 32 140 4.50e-20 86.7
Msa0672950 MtrunA17_Chr4g0042121 32.283 127 79 3 7 129 21 144 2.79e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0672950 AT1G16390.1 48.795 498 244 6 15 503 14 509 1.78e-175 504
Msa0672950 AT1G79360.1 47.400 500 248 6 23 507 19 518 1.68e-171 494
Msa0672950 AT1G79410.1 42.970 505 276 8 7 505 9 507 1.10e-137 407
Msa0672950 AT1G16370.1 42.331 489 268 7 25 505 31 513 5.15e-137 406
Msa0672950 AT1G73220.1 35.465 516 317 6 2 507 23 532 7.72e-105 324
Msa0672950 AT3G20660.1 29.377 514 340 11 4 507 17 517 3.37e-71 236
Msa0672950 AT3G51490.3 28.902 173 115 3 127 292 3 174 1.50e-12 70.5
Msa0672950 AT3G51490.2 28.902 173 115 3 127 292 53 224 1.87e-12 70.5
Msa0672950 AT3G51490.1 28.902 173 115 3 127 292 53 224 2.01e-12 70.1
Msa0672950 AT1G34580.2 24.057 424 267 18 120 504 37 444 1.27e-11 67.0
Msa0672950 AT1G34580.1 24.057 424 267 18 120 504 87 494 2.01e-11 66.6
Msa0672950 AT1G20840.2 26.415 159 106 2 141 292 68 222 7.30e-11 65.5
Msa0672950 AT1G20840.1 26.415 159 106 2 141 292 68 222 7.30e-11 65.5

Find 109 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTGGAATGGTTTATTT+TGG 0.180720 4_4:+18672381 Msa0672950:CDS
CGTGGAAATCGGTGTATATT+TGG 0.206428 4_4:+18672082 Msa0672950:CDS
ATGTGTACATGAAACATCTT+AGG 0.247780 4_4:+18673171 Msa0672950:three_prime_UTR
GAATATTTCTGCTTCACATT+AGG 0.262371 4_4:+18672015 Msa0672950:CDS
AATATTTCTGCTTCACATTA+GGG 0.272078 4_4:+18672016 Msa0672950:CDS
GAAAGGGGTTTAGGAAGATT+TGG 0.291856 4_4:+18671478 Msa0672950:CDS
CCTCCCAGCAGATATCAAAA+AGG 0.297351 4_4:-18672754 None:intergenic
TTGTGTGGCTACTTATTTCT+TGG 0.297902 4_4:+18672482 Msa0672950:CDS
GAAGCTATGGCAATGCTTAA+AGG 0.298486 4_4:+18672195 Msa0672950:CDS
CAAGAATCGATGGCTTTCTT+TGG 0.301329 4_4:-18672512 None:intergenic
ATGGTTCTTGGTATTGGAAT+TGG 0.308137 4_4:+18672366 Msa0672950:CDS
GCAAAATTCCTAAGTCTTCA+TGG 0.320997 4_4:+18671644 Msa0672950:CDS
CCGCAATCTTCGTTCTTCAT+TGG 0.331379 4_4:+18671745 Msa0672950:CDS
CGTCAATTGCAGAGTTGTTC+GGG 0.343455 4_4:+18672310 Msa0672950:CDS
GAAATGATGGAAAGGGGTTT+AGG 0.347800 4_4:+18671469 Msa0672950:CDS
GCCATCGATTCTTGTATTCT+CGG 0.352206 4_4:+18672521 Msa0672950:CDS
TGTTACATTACTCGGTTTGC+CGG 0.361066 4_4:+18672830 Msa0672950:CDS
CCTTTAGCCGTTGGAAACTT+AGG 0.365016 4_4:+18672408 Msa0672950:CDS
TGTGCTAGTAGCTTTGTAAC+AGG 0.368806 4_4:+18671718 Msa0672950:CDS
TTCTTAGGTCATAAGCTTCA+TGG 0.370163 4_4:-18673195 None:intergenic
TGTATAATGTGTGTTATTGT+TGG 0.371116 4_4:+18672561 Msa0672950:CDS
GCGGTAATGGTTCTTGGTAT+TGG 0.379219 4_4:+18672360 Msa0672950:CDS
TCGTCAATTGCAGAGTTGTT+CGG 0.383274 4_4:+18672309 Msa0672950:CDS
TTCTCTCATGGCGGCTATAG+AGG 0.389503 4_4:+18670663 Msa0672950:exon
TCCATCATTTCATCTGTTGA+AGG 0.402045 4_4:-18671457 None:intergenic
CAGAGTTGTTCGGGAGAAGT+TGG 0.405119 4_4:+18672319 Msa0672950:CDS
TAGATATAATTCGTGGAAAT+CGG 0.408726 4_4:+18672071 Msa0672950:CDS
ATATACCTCAGAAGAAGCTT+GGG 0.417687 4_4:-18670704 None:intergenic
GATTCGTACAATGCCATGTT+TGG 0.423157 4_4:-18671591 None:intergenic
ATGATTGAGTAAATAATTGC+AGG 0.429182 4_4:-18672114 None:intergenic
TTTCTTCTCTTGTTGATCCA+TGG 0.431898 4_4:-18672880 None:intergenic
AAAGCGAATGGTGGCGGTAA+TGG 0.437000 4_4:+18672347 Msa0672950:CDS
ATGACATGTCAGTTTAAAAT+CGG 0.439222 4_4:+18672904 Msa0672950:exon
CCGAGTGGAGGTTCACTGTT+GGG 0.441877 4_4:+18671986 Msa0672950:CDS
ATGGTGGCGGTAATGGTTCT+TGG 0.443762 4_4:+18672354 Msa0672950:CDS
AACAGATGAAATGATGGAAA+GGG 0.447149 4_4:+18671462 Msa0672950:CDS
GTCACGTTTGGTTTATGTAA+AGG 0.450575 4_4:-18670571 None:intergenic
ATCGGGACAACAAGGAATTA+AGG 0.453209 4_4:+18672584 Msa0672950:CDS
TTCCTAAGTCTTCATGGTCA+TGG 0.455731 4_4:+18671650 Msa0672950:CDS
TTTGGAATGCCTTTAGCCGT+TGG 0.456255 4_4:+18672399 Msa0672950:CDS
AGAGTTGTTCGGGAGAAGTT+GGG 0.457783 4_4:+18672320 Msa0672950:CDS
TATATACCTCAGAAGAAGCT+TGG 0.458289 4_4:-18670705 None:intergenic
TTGTCTTGTGTTACATTACT+CGG 0.467042 4_4:+18672822 Msa0672950:CDS
TGTTGTGTTCAACGGTTTGA+TGG 0.467189 4_4:+18672449 Msa0672950:CDS
TGTTACTTATCAGTTAATAG+TGG 0.470031 4_4:-18673114 None:intergenic
TATTTGGCTGTTGTGTTCAA+CGG 0.483478 4_4:+18672441 Msa0672950:CDS
GAAGCTTGGGGTATGGAAGA+AGG 0.491661 4_4:-18670691 None:intergenic
ATCTTAATAGATATAATTCG+TGG 0.492171 4_4:+18672064 Msa0672950:CDS
CTTGCATTAGAAGCCATCTC+GGG 0.492815 4_4:-18672161 None:intergenic
CTCAGAAGAAGCTTGGGGTA+TGG 0.496504 4_4:-18670698 None:intergenic
CTGCAATTGACGAGTAAAGC+TGG 0.497090 4_4:-18672299 None:intergenic
TAGAAGCCATCTCGGGGACT+CGG 0.499415 4_4:-18672154 None:intergenic
CCTTGCATTAGAAGCCATCT+CGG 0.501206 4_4:-18672162 None:intergenic
CCTAAGTTTCCAACGGCTAA+AGG 0.502513 4_4:-18672408 None:intergenic
GTAGTGTTTCTCACACTTGT+TGG 0.504323 4_4:-18672684 None:intergenic
ATGTGTGTTATTGTTGGATC+GGG 0.504656 4_4:+18672567 Msa0672950:CDS
GAGAAACACTACAACATCAT+TGG 0.509406 4_4:+18672695 Msa0672950:CDS
TCCTTCAACAGATGAAATGA+TGG 0.510742 4_4:+18671456 Msa0672950:CDS
TTAGGGTATGTGTCATTGCC+TGG 0.518083 4_4:+18672033 Msa0672950:CDS
GGCTCTAAAGCGAATGGTGG+CGG 0.520323 4_4:+18672341 Msa0672950:CDS
TCTTGGTATTGGAATTGGAA+TGG 0.520997 4_4:+18672371 Msa0672950:CDS
TAAAAGCAAGTTTACCATTG+TGG 0.525109 4_4:-18673083 None:intergenic
TCCTAAGTCTTCATGGTCAT+GGG 0.525136 4_4:+18671651 Msa0672950:CDS
GAATTGTTACCTTCAAAAGA+AGG 0.526708 4_4:-18673061 None:intergenic
GGGTTTAGGAAGATTTGGTT+GGG 0.532129 4_4:+18671483 Msa0672950:CDS
GGGGTTTAGGAAGATTTGGT+TGG 0.533651 4_4:+18671482 Msa0672950:CDS
CTAGAAGAAACGAACCGAAA+AGG 0.540466 4_4:-18671771 None:intergenic
AGCCCCGGTGAATAAACAAA+AGG 0.542980 4_4:+18672266 Msa0672950:CDS
AATGTGTGTTATTGTTGGAT+CGG 0.549320 4_4:+18672566 Msa0672950:CDS
CTTGTATTCTCGGTAGCTAG+TGG 0.549620 4_4:+18672531 Msa0672950:CDS
CAACAGATGAAATGATGGAA+AGG 0.550084 4_4:+18671461 Msa0672950:CDS
ACAAAACAGTGATATCTCAA+TGG 0.553373 4_4:+18671686 Msa0672950:CDS
ATGCCATGTTTGGTATTCGT+CGG 0.558939 4_4:-18671581 None:intergenic
GACAACAAGGAATTAAGGTC+GGG 0.563112 4_4:+18672589 Msa0672950:CDS
CTATTAAGATAAGCTATACC+AGG 0.565268 4_4:-18672051 None:intergenic
ATTAGCTCTTTCAGATACCA+TGG 0.565402 4_4:+18672863 Msa0672950:CDS
CTCGGTTTGCCGGAGTCAAG+AGG 0.567370 4_4:+18672840 Msa0672950:CDS
TCCCATGACCATGAAGACTT+AGG 0.573627 4_4:-18671652 None:intergenic
AGGACGACATCAAGAAGCTA+TGG 0.579332 4_4:+18672182 Msa0672950:CDS
AAGTCTTCATGGTCATGGGA+TGG 0.580758 4_4:+18671655 Msa0672950:CDS
ACTTTAGCTGATACATCACT+TGG 0.581500 4_4:+18671796 Msa0672950:CDS
AGTAAGTTTAATAGAAGCCC+CGG 0.581651 4_4:+18672251 Msa0672950:CDS
ACCGAGTGGAGGTTCACTGT+TGG 0.582904 4_4:+18671985 Msa0672950:CDS
AACAGAATAAATCCAAACAT+TGG 0.591278 4_4:-18671887 None:intergenic
GAATCTGATGCACATGTGGT+CGG 0.594235 4_4:-18671613 None:intergenic
ACAGATGAAATGATGGAAAG+GGG 0.595316 4_4:+18671463 Msa0672950:CDS
ATCGGTGTATATTTGGACAT+CGG 0.596172 4_4:+18672089 Msa0672950:CDS
TTGTTACCGAGTCCCCGAGA+TGG 0.599721 4_4:+18672148 Msa0672950:CDS
ACCGAGAATACAAGAATCGA+TGG 0.601771 4_4:-18672522 None:intergenic
GGACAACAAGGAATTAAGGT+CGG 0.602421 4_4:+18672588 Msa0672950:CDS
AGAGCTAATCCTCTTGACTC+CGG 0.602963 4_4:-18672849 None:intergenic
CATACCCCAAGCTTCTTCTG+AGG 0.603884 4_4:+18670699 Msa0672950:CDS
GATGGAAATACCGTCTTGTG+TGG 0.605544 4_4:+18672467 Msa0672950:CDS
TGTGTACATGAAACATCTTA+GGG 0.615397 4_4:+18673172 Msa0672950:three_prime_UTR
GTCAAAACCTAAGTTTCCAA+CGG 0.615468 4_4:-18672415 None:intergenic
ATTGTTGGATCGGGACAACA+AGG 0.619158 4_4:+18672576 Msa0672950:CDS
CCGAGATGGCTTCTAATGCA+AGG 0.623082 4_4:+18672162 Msa0672950:CDS
AAATAAGTAGCCACACAAGA+CGG 0.630270 4_4:-18672477 None:intergenic
TGAAGGTAACAATTCCACAA+TGG 0.632979 4_4:+18673069 Msa0672950:three_prime_UTR
AAGTTGGGCTCTAAAGCGAA+TGG 0.635588 4_4:+18672335 Msa0672950:CDS
ACACCGACGAATACCAAACA+TGG 0.647674 4_4:+18671578 Msa0672950:CDS
CCCAACAGTGAACCTCCACT+CGG 0.649161 4_4:-18671986 None:intergenic
TTGCATTAGAAGCCATCTCG+GGG 0.669568 4_4:-18672160 None:intergenic
CTGAGAAAGTTAGTACCGAG+TGG 0.671581 4_4:+18671971 Msa0672950:CDS
TTGGGCTCTAAAGCGAATGG+TGG 0.677343 4_4:+18672338 Msa0672950:CDS
GTTAGAATCTGATGCACATG+TGG 0.681692 4_4:-18671617 None:intergenic
TATACCTCAGAAGAAGCTTG+GGG 0.696128 4_4:-18670703 None:intergenic
AGAAAGTTAGTACCGAGTGG+AGG 0.706492 4_4:+18671974 Msa0672950:CDS
CCAATGAAGAACGAAGATTG+CGG 0.713248 4_4:-18671745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CCAATTTTATATAATTATTT+TGG - chr4_4:18671154-18671173 None:intergenic 10.0%
!! CCAAAATAATTATATAAAAT+TGG + chr4_4:18671151-18671170 Msa0672950:intron 10.0%
!! CAGATTAAATATAAATAAAT+AGG - chr4_4:18671246-18671265 None:intergenic 10.0%
!! AGCAATATTTATTGAAAAAA+TGG - chr4_4:18670601-18670620 None:intergenic 15.0%
!! TAATTAAGATGATAAAGTAA+CGG - chr4_4:18670882-18670901 None:intergenic 15.0%
!!! GGTTTGTTTATATATAATTA+GGG - chr4_4:18670906-18670925 None:intergenic 15.0%
!!! TGGTTTGTTTATATATAATT+AGG - chr4_4:18670907-18670926 None:intergenic 15.0%
!!! ATTTTAATAGCAATTAGAAA+TGG + chr4_4:18671372-18671391 Msa0672950:intron 15.0%
!! TCACTACTATCAAAATTATT+TGG + chr4_4:18670806-18670825 Msa0672950:intron 20.0%
!! AAAACTAAAAAATTCAATCC+TGG - chr4_4:18671209-18671228 None:intergenic 20.0%
!! TGCTTTCAATTGAATAATAA+AGG - chr4_4:18671312-18671331 None:intergenic 20.0%
!! GAATTAGAATTAGTTGAAAT+TGG - chr4_4:18671415-18671434 None:intergenic 20.0%
!!! TCTGTTTTTAAATTCTTGAT+TGG + chr4_4:18671904-18671923 Msa0672950:CDS 20.0%
!! ATCTTAATAGATATAATTCG+TGG + chr4_4:18672064-18672083 Msa0672950:CDS 20.0%
!!! AAAAATGACATTTTCTCATA+CGG + chr4_4:18672777-18672796 Msa0672950:CDS 20.0%
! ATCAAAGTCAAACAAAAACT+TGG - chr4_4:18671047-18671066 None:intergenic 25.0%
! CAATTGAATAATAAAGGCAA+AGG - chr4_4:18671306-18671325 None:intergenic 25.0%
! AATAGTAATAGCAATAGCAT+AGG + chr4_4:18671337-18671356 Msa0672950:intron 25.0%
! TAATTCTAATTCTATTGAGC+AGG + chr4_4:18671423-18671442 Msa0672950:intron 25.0%
! AACAGAATAAATCCAAACAT+TGG - chr4_4:18671890-18671909 None:intergenic 25.0%
!! AATATTTCTGCTTCACATTA+GGG + chr4_4:18672016-18672035 Msa0672950:CDS 25.0%
! TAGATATAATTCGTGGAAAT+CGG + chr4_4:18672071-18672090 Msa0672950:CDS 25.0%
! ATGATTGAGTAAATAATTGC+AGG - chr4_4:18672117-18672136 None:intergenic 25.0%
!!! CTTAGGTTTTGACATTTATT+TGG + chr4_4:18672425-18672444 Msa0672950:CDS 25.0%
!! TGTATAATGTGTGTTATTGT+TGG + chr4_4:18672561-18672580 Msa0672950:CDS 25.0%
!! ATGACATGTCAGTTTAAAAT+CGG + chr4_4:18672904-18672923 Msa0672950:exon 25.0%
!! TGTTACTTATCAGTTAATAG+TGG - chr4_4:18673117-18673136 None:intergenic 25.0%
!!! TCTCATCTTTTTTTCTCTCA+TGG + chr4_4:18670651-18670670 Msa0672950:exon 30.0%
ATAAACAAACCAAAAGTCCT+TGG + chr4_4:18670915-18670934 Msa0672950:intron 30.0%
TAATAAAATGCAACTAGCCA+AGG - chr4_4:18670935-18670954 None:intergenic 30.0%
ATAGCAATTAGAAATGGCAT+TGG + chr4_4:18671378-18671397 Msa0672950:intron 30.0%
! AACAGATGAAATGATGGAAA+GGG + chr4_4:18671462-18671481 Msa0672950:CDS 30.0%
ACAAAACAGTGATATCTCAA+TGG + chr4_4:18671686-18671705 Msa0672950:CDS 30.0%
! TTGTTTTCTCTACCAATGTT+TGG + chr4_4:18671875-18671894 Msa0672950:CDS 30.0%
! GAATATTTCTGCTTCACATT+AGG + chr4_4:18672015-18672034 Msa0672950:CDS 30.0%
CTATTAAGATAAGCTATACC+AGG - chr4_4:18672054-18672073 None:intergenic 30.0%
! GGAATTGGAATGGTTTATTT+TGG + chr4_4:18672381-18672400 Msa0672950:CDS 30.0%
! AATGTGTGTTATTGTTGGAT+CGG + chr4_4:18672566-18672585 Msa0672950:CDS 30.0%
TTGTCTTGTGTTACATTACT+CGG + chr4_4:18672822-18672841 Msa0672950:CDS 30.0%
!!! TCACGTTTTTTTTTGTTGCT+TGG + chr4_4:18672954-18672973 Msa0672950:three_prime_UTR 30.0%
!!! GTTTTTTTTTGTTGCTTGGT+AGG + chr4_4:18672958-18672977 Msa0672950:three_prime_UTR 30.0%
GAATTGTTACCTTCAAAAGA+AGG - chr4_4:18673064-18673083 None:intergenic 30.0%
TAAAAGCAAGTTTACCATTG+TGG - chr4_4:18673086-18673105 None:intergenic 30.0%
ATGTGTACATGAAACATCTT+AGG + chr4_4:18673171-18673190 Msa0672950:three_prime_UTR 30.0%
TGTGTACATGAAACATCTTA+GGG + chr4_4:18673172-18673191 Msa0672950:three_prime_UTR 30.0%
! GTCACGTTTGGTTTATGTAA+AGG - chr4_4:18670574-18670593 None:intergenic 35.0%
AAAAATGGATGTGTCACGTT+TGG - chr4_4:18670586-18670605 None:intergenic 35.0%
!!! CATCTTTTTTTCTCTCATGG+CGG + chr4_4:18670654-18670673 Msa0672950:exon 35.0%
ATATACCTCAGAAGAAGCTT+GGG - chr4_4:18670707-18670726 None:intergenic 35.0%
TATATACCTCAGAAGAAGCT+TGG - chr4_4:18670708-18670727 None:intergenic 35.0%
TCCTTCAACAGATGAAATGA+TGG + chr4_4:18671456-18671475 Msa0672950:CDS 35.0%
TCCATCATTTCATCTGTTGA+AGG - chr4_4:18671460-18671479 None:intergenic 35.0%
! CAACAGATGAAATGATGGAA+AGG + chr4_4:18671461-18671480 Msa0672950:CDS 35.0%
! ACAGATGAAATGATGGAAAG+GGG + chr4_4:18671463-18671482 Msa0672950:CDS 35.0%
GCAAAATTCCTAAGTCTTCA+TGG + chr4_4:18671644-18671663 Msa0672950:CDS 35.0%
!! TTCTTCATTGGTTGCCTTTT+CGG + chr4_4:18671757-18671776 Msa0672950:CDS 35.0%
ACTTTAGCTGATACATCACT+TGG + chr4_4:18671796-18671815 Msa0672950:CDS 35.0%
ATCGGTGTATATTTGGACAT+CGG + chr4_4:18672089-18672108 Msa0672950:CDS 35.0%
AGTAAGTTTAATAGAAGCCC+CGG + chr4_4:18672251-18672270 Msa0672950:CDS 35.0%
!! AAGCCTTTTGTTTATTCACC+GGG - chr4_4:18672272-18672291 None:intergenic 35.0%
!! GAAGCCTTTTGTTTATTCAC+CGG - chr4_4:18672273-18672292 None:intergenic 35.0%
! ATGGTTCTTGGTATTGGAAT+TGG + chr4_4:18672366-18672385 Msa0672950:CDS 35.0%
! TCTTGGTATTGGAATTGGAA+TGG + chr4_4:18672371-18672390 Msa0672950:CDS 35.0%
GTCAAAACCTAAGTTTCCAA+CGG - chr4_4:18672418-18672437 None:intergenic 35.0%
TATTTGGCTGTTGTGTTCAA+CGG + chr4_4:18672441-18672460 Msa0672950:CDS 35.0%
AAATAAGTAGCCACACAAGA+CGG - chr4_4:18672480-18672499 None:intergenic 35.0%
! TTGTGTGGCTACTTATTTCT+TGG + chr4_4:18672482-18672501 Msa0672950:CDS 35.0%
! ATGTGTGTTATTGTTGGATC+GGG + chr4_4:18672567-18672586 Msa0672950:CDS 35.0%
GAGAAACACTACAACATCAT+TGG + chr4_4:18672695-18672714 Msa0672950:CDS 35.0%
! GTGAGACAAGCTATTGTTTT+TGG + chr4_4:18672717-18672736 Msa0672950:CDS 35.0%
! ATTAGCTCTTTCAGATACCA+TGG + chr4_4:18672863-18672882 Msa0672950:CDS 35.0%
TTTCTTCTCTTGTTGATCCA+TGG - chr4_4:18672883-18672902 None:intergenic 35.0%
! TGAGTTTCACCTTCTTTTGA+AGG + chr4_4:18673052-18673071 Msa0672950:three_prime_UTR 35.0%
TGAAGGTAACAATTCCACAA+TGG + chr4_4:18673069-18673088 Msa0672950:three_prime_UTR 35.0%
TATACCTCAGAAGAAGCTTG+GGG - chr4_4:18670706-18670725 None:intergenic 40.0%
AATAACAACGTGCACAAGCA+TGG - chr4_4:18671113-18671132 None:intergenic 40.0%
TTCAATCCTGGCAACTACTA+TGG - chr4_4:18671197-18671216 None:intergenic 40.0%
! GAAATGATGGAAAGGGGTTT+AGG + chr4_4:18671469-18671488 Msa0672950:CDS 40.0%
GAAAGGGGTTTAGGAAGATT+TGG + chr4_4:18671478-18671497 Msa0672950:CDS 40.0%
! GGGTTTAGGAAGATTTGGTT+GGG + chr4_4:18671483-18671502 Msa0672950:CDS 40.0%
ATGCCATGTTTGGTATTCGT+CGG - chr4_4:18671584-18671603 None:intergenic 40.0%
GATTCGTACAATGCCATGTT+TGG - chr4_4:18671594-18671613 None:intergenic 40.0%
GTTAGAATCTGATGCACATG+TGG - chr4_4:18671620-18671639 None:intergenic 40.0%
TTCCTAAGTCTTCATGGTCA+TGG + chr4_4:18671650-18671669 Msa0672950:CDS 40.0%
TCCTAAGTCTTCATGGTCAT+GGG + chr4_4:18671651-18671670 Msa0672950:CDS 40.0%
! GATATCACTGTTTTGTGTGC+TGG - chr4_4:18671682-18671701 None:intergenic 40.0%
!! TGTGCTAGTAGCTTTGTAAC+AGG + chr4_4:18671718-18671737 Msa0672950:CDS 40.0%
CCAATGAAGAACGAAGATTG+CGG - chr4_4:18671748-18671767 None:intergenic 40.0%
CTAGAAGAAACGAACCGAAA+AGG - chr4_4:18671774-18671793 None:intergenic 40.0%
CGTGGAAATCGGTGTATATT+TGG + chr4_4:18672082-18672101 Msa0672950:CDS 40.0%
GAAGCTATGGCAATGCTTAA+AGG + chr4_4:18672195-18672214 Msa0672950:CDS 40.0%
!! AGCCTTTTGTTTATTCACCG+GGG - chr4_4:18672271-18672290 None:intergenic 40.0%
TCGTCAATTGCAGAGTTGTT+CGG + chr4_4:18672309-18672328 Msa0672950:CDS 40.0%
TGTTGTGTTCAACGGTTTGA+TGG + chr4_4:18672449-18672468 Msa0672950:CDS 40.0%
CAAGAATCGATGGCTTTCTT+TGG - chr4_4:18672515-18672534 None:intergenic 40.0%
!! GCCATCGATTCTTGTATTCT+CGG + chr4_4:18672521-18672540 Msa0672950:CDS 40.0%
ACCGAGAATACAAGAATCGA+TGG - chr4_4:18672525-18672544 None:intergenic 40.0%
ATCGGGACAACAAGGAATTA+AGG + chr4_4:18672584-18672603 Msa0672950:CDS 40.0%
GGACAACAAGGAATTAAGGT+CGG + chr4_4:18672588-18672607 Msa0672950:CDS 40.0%
GACAACAAGGAATTAAGGTC+GGG + chr4_4:18672589-18672608 Msa0672950:CDS 40.0%
GTAGTGTTTCTCACACTTGT+TGG - chr4_4:18672687-18672706 None:intergenic 40.0%
TCCCAGCAGATATCAAAAAG+GGG - chr4_4:18672755-18672774 None:intergenic 40.0%
CTCCCAGCAGATATCAAAAA+GGG - chr4_4:18672756-18672775 None:intergenic 40.0%
! ATTTTCTCATACGGCGTGTT+TGG + chr4_4:18672786-18672805 Msa0672950:CDS 40.0%
! TGTTACATTACTCGGTTTGC+CGG + chr4_4:18672830-18672849 Msa0672950:CDS 40.0%
! TGCAACTAGCCAAGGACTTT+TGG - chr4_4:18670927-18670946 None:intergenic 45.0%
TCAATGCCATAGTAGTTGCC+AGG + chr4_4:18671188-18671207 Msa0672950:intron 45.0%
! GGGGTTTAGGAAGATTTGGT+TGG + chr4_4:18671482-18671501 Msa0672950:CDS 45.0%
ACACCGACGAATACCAAACA+TGG + chr4_4:18671578-18671597 Msa0672950:CDS 45.0%
GAATCTGATGCACATGTGGT+CGG - chr4_4:18671616-18671635 None:intergenic 45.0%
TCCCATGACCATGAAGACTT+AGG - chr4_4:18671655-18671674 None:intergenic 45.0%
AAGTCTTCATGGTCATGGGA+TGG + chr4_4:18671655-18671674 Msa0672950:CDS 45.0%
CCGCAATCTTCGTTCTTCAT+TGG + chr4_4:18671745-18671764 Msa0672950:CDS 45.0%
! CTGAGAAAGTTAGTACCGAG+TGG + chr4_4:18671971-18671990 Msa0672950:CDS 45.0%
! AGAAAGTTAGTACCGAGTGG+AGG + chr4_4:18671974-18671993 Msa0672950:CDS 45.0%
! TTAGGGTATGTGTCATTGCC+TGG + chr4_4:18672033-18672052 Msa0672950:CDS 45.0%
TTGCATTAGAAGCCATCTCG+GGG - chr4_4:18672163-18672182 None:intergenic 45.0%
CTTGCATTAGAAGCCATCTC+GGG - chr4_4:18672164-18672183 None:intergenic 45.0%
CCTTGCATTAGAAGCCATCT+CGG - chr4_4:18672165-18672184 None:intergenic 45.0%
AGGACGACATCAAGAAGCTA+TGG + chr4_4:18672182-18672201 Msa0672950:CDS 45.0%
AGCCCCGGTGAATAAACAAA+AGG + chr4_4:18672266-18672285 Msa0672950:CDS 45.0%
CTGCAATTGACGAGTAAAGC+TGG - chr4_4:18672302-18672321 None:intergenic 45.0%
CGTCAATTGCAGAGTTGTTC+GGG + chr4_4:18672310-18672329 Msa0672950:CDS 45.0%
AGAGTTGTTCGGGAGAAGTT+GGG + chr4_4:18672320-18672339 Msa0672950:CDS 45.0%
!! AAGTTGGGCTCTAAAGCGAA+TGG + chr4_4:18672335-18672354 Msa0672950:CDS 45.0%
! GCGGTAATGGTTCTTGGTAT+TGG + chr4_4:18672360-18672379 Msa0672950:CDS 45.0%
! TTTGGAATGCCTTTAGCCGT+TGG + chr4_4:18672399-18672418 Msa0672950:CDS 45.0%
CCTAAGTTTCCAACGGCTAA+AGG - chr4_4:18672411-18672430 None:intergenic 45.0%
CCTTTAGCCGTTGGAAACTT+AGG + chr4_4:18672408-18672427 Msa0672950:CDS 45.0%
GATGGAAATACCGTCTTGTG+TGG + chr4_4:18672467-18672486 Msa0672950:CDS 45.0%
CTTGTATTCTCGGTAGCTAG+TGG + chr4_4:18672531-18672550 Msa0672950:CDS 45.0%
ATTGTTGGATCGGGACAACA+AGG + chr4_4:18672576-18672595 Msa0672950:CDS 45.0%
! AGCCCCTTTTTGATATCTGC+TGG + chr4_4:18672750-18672769 Msa0672950:CDS 45.0%
! GCCCCTTTTTGATATCTGCT+GGG + chr4_4:18672751-18672770 Msa0672950:CDS 45.0%
CCTCCCAGCAGATATCAAAA+AGG - chr4_4:18672757-18672776 None:intergenic 45.0%
! CCTTTTTGATATCTGCTGGG+AGG + chr4_4:18672754-18672773 Msa0672950:CDS 45.0%
AGAGCTAATCCTCTTGACTC+CGG - chr4_4:18672852-18672871 None:intergenic 45.0%
!! AGATTAAATATAAATAAATA+GGG - chr4_4:18671245-18671264 None:intergenic 5.0%
TTCTCTCATGGCGGCTATAG+AGG + chr4_4:18670663-18670682 Msa0672950:exon 50.0%
GAAGCTTGGGGTATGGAAGA+AGG - chr4_4:18670694-18670713 None:intergenic 50.0%
CTCAGAAGAAGCTTGGGGTA+TGG - chr4_4:18670701-18670720 None:intergenic 50.0%
CATACCCCAAGCTTCTTCTG+AGG + chr4_4:18670699-18670718 Msa0672950:CDS 50.0%
! GGCTTTTTGCGTTCGTCGAT+TGG + chr4_4:18671925-18671944 Msa0672950:CDS 50.0%
CCGAGATGGCTTCTAATGCA+AGG + chr4_4:18672162-18672181 Msa0672950:CDS 50.0%
CAGAGTTGTTCGGGAGAAGT+TGG + chr4_4:18672319-18672338 Msa0672950:CDS 50.0%
!! TTGGGCTCTAAAGCGAATGG+TGG + chr4_4:18672338-18672357 Msa0672950:CDS 50.0%
!! AAAGCGAATGGTGGCGGTAA+TGG + chr4_4:18672347-18672366 Msa0672950:CDS 50.0%
!! ATGGTGGCGGTAATGGTTCT+TGG + chr4_4:18672354-18672373 Msa0672950:CDS 50.0%
ACCGAGTGGAGGTTCACTGT+TGG + chr4_4:18671985-18672004 Msa0672950:CDS 55.0%
CCCAACAGTGAACCTCCACT+CGG - chr4_4:18671989-18672008 None:intergenic 55.0%
CCGAGTGGAGGTTCACTGTT+GGG + chr4_4:18671986-18672005 Msa0672950:CDS 55.0%
TTGTTACCGAGTCCCCGAGA+TGG + chr4_4:18672148-18672167 Msa0672950:CDS 55.0%
TAGAAGCCATCTCGGGGACT+CGG - chr4_4:18672157-18672176 None:intergenic 55.0%
!! GGCTCTAAAGCGAATGGTGG+CGG + chr4_4:18672341-18672360 Msa0672950:CDS 55.0%
! CTCGGTTTGCCGGAGTCAAG+AGG + chr4_4:18672840-18672859 Msa0672950:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 18670571 18673214 18670571 ID=Msa0672950;Name=Msa0672950
chr4_4 mRNA 18670571 18673214 18670571 ID=Msa0672950-mRNA-1;Parent=Msa0672950;Name=Msa0672950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=99|1|1|1|0|0.5|2|294|508
chr4_4 exon 18670571 18670720 18670571 ID=Msa0672950-mRNA-1:exon:5381;Parent=Msa0672950-mRNA-1
chr4_4 exon 18671445 18673214 18671445 ID=Msa0672950-mRNA-1:exon:5382;Parent=Msa0672950-mRNA-1
chr4_4 five_prime_UTR 18670571 18670669 18670571 ID=Msa0672950-mRNA-1:five_prime_utr;Parent=Msa0672950-mRNA-1
chr4_4 CDS 18670670 18670720 18670670 ID=Msa0672950-mRNA-1:cds;Parent=Msa0672950-mRNA-1
chr4_4 CDS 18671445 18672920 18671445 ID=Msa0672950-mRNA-1:cds;Parent=Msa0672950-mRNA-1
chr4_4 three_prime_UTR 18672921 18673214 18672921 ID=Msa0672950-mRNA-1:three_prime_utr;Parent=Msa0672950-mRNA-1
Gene Sequence

>Msa0672950

ATGGCGGCTATAGAGGAGTTACCTTCTTCCATACCCCAAGCTTCTTCTGAGGAAAAAGTGATTCCTTCAACAGATGAAATGATGGAAAGGGGTTTAGGAAGATTTGGTTGGGTAGAATTTGTGCAATGCGTTCTTGTTTCATTCGCAATGTTCTTTGACGCACAACAATCGTTCATAACGATTTACACCGACGAATACCAAACATGGCATTGTACGAATCCGACCACATGTGCATCAGATTCTAACATCTGCAAAATTCCTAAGTCTTCATGGTCATGGGATGGACCAGCACACAAAACAGTGATATCTCAATGGAGTCTTGAATGTGCTAGTAGCTTTGTAACAGGTTTACCGCAATCTTCGTTCTTCATTGGTTGCCTTTTCGGTTCGTTTCTTCTAGCAACTTTAGCTGATACATCACTTGGTAGAAAGAACATGCTTGTTATGTCTTGTTTATCGATGTCTATAGTTTCAATTCTCATTGTTTTCTCTACCAATGTTTGGATTTATTCTGTTTTTAAATTCTTGATTGGCTTTTTGCGTTCGTCGATTGGAACTTGTGTTCTTGTTTTGCTAACTGAGAAAGTTAGTACCGAGTGGAGGTTCACTGTTGGGATTGTCGAATATTTCTGCTTCACATTAGGGTATGTGTCATTGCCTGGTATAGCTTATCTTAATAGATATAATTCGTGGAAATCGGTGTATATTTGGACATCGGTTCCTGCAATTATTTACTCAATCATTGCTTATATCTTTGTTACCGAGTCCCCGAGATGGCTTCTAATGCAAGGACGACATCAAGAAGCTATGGCAATGCTTAAAGGAGTTTCTTCTGTAGAGAACAGTGATGATATGATAGTAAGTTTAATAGAAGCCCCGGTGAATAAACAAAAGGCTTCGATTTTCCAGCTTTACTCGTCAATTGCAGAGTTGTTCGGGAGAAGTTGGGCTCTAAAGCGAATGGTGGCGGTAATGGTTCTTGGTATTGGAATTGGAATGGTTTATTTTGGAATGCCTTTAGCCGTTGGAAACTTAGGTTTTGACATTTATTTGGCTGTTGTGTTCAACGGTTTGATGGAAATACCGTCTTGTGTGGCTACTTATTTCTTGGAGAATCGCCAAAGAAAGCCATCGATTCTTGTATTCTCGGTAGCTAGTGGCATATGTTGTATAATGTGTGTTATTGTTGGATCGGGACAACAAGGAATTAAGGTCGGGTTAGCGATGACATCGTTTTTCAGTGCTTGCACAGCTTATAATGTGTTTCTCATTTACATTATTGAGCTGTTTCCAACAAGTGTGAGAAACACTACAACATCATTGGTGAGACAAGCTATTGTTTTTGGTAACATTTTCAGCCCCTTTTTGATATCTGCTGGGAGGAAAAATGACATTTTCTCATACGGCGTGTTTGGAGTTGTTATCATGTTGTCTTGTGTTACATTACTCGGTTTGCCGGAGTCAAGAGGATTAGCTCTTTCAGATACCATGGATCAACAAGAGAAGAAAGATGACATGTCAGTTTAA

Protein sequence

>Msa0672950

MAAIEELPSSIPQASSEEKVIPSTDEMMERGLGRFGWVEFVQCVLVSFAMFFDAQQSFITIYTDEYQTWHCTNPTTCASDSNICKIPKSSWSWDGPAHKTVISQWSLECASSFVTGLPQSSFFIGCLFGSFLLATLADTSLGRKNMLVMSCLSMSIVSILIVFSTNVWIYSVFKFLIGFLRSSIGTCVLVLLTEKVSTEWRFTVGIVEYFCFTLGYVSLPGIAYLNRYNSWKSVYIWTSVPAIIYSIIAYIFVTESPRWLLMQGRHQEAMAMLKGVSSVENSDDMIVSLIEAPVNKQKASIFQLYSSIAELFGRSWALKRMVAVMVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNGLMEIPSCVATYFLENRQRKPSILVFSVASGICCIMCVIVGSGQQGIKVGLAMTSFFSACTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDIFSYGVFGVVIMLSCVTLLGLPESRGLALSDTMDQQEKKDDMSV*