AlfalfaGEDB | Msa0638810

M. sativa cultivar zhongmu-4 / Msa0638810

KEGG: -
GO: GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005319 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009611 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009897 GO:0009965 GO:0009986 GO:0010016 GO:0010033 GO:0010051 GO:0010154 GO:0010222 GO:0010588 GO:0010876 GO:0015075 GO:0015245 GO:0015318 GO:0015399 GO:0015405 GO:0015711 GO:0015718 GO:0015849 GO:0015908 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0034220 GO:0042221 GO:0042623 GO:0042626 GO:0042802 GO:0042803 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0046983 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061458 GO:0071702 GO:0071944 GO:0080051 GO:0090698 GO:0097305 GO:0098552 GO:0098656 GO:0099402 GO:1901700 GO:1903825 GO:1905039 GO:1905392
PFAM: PF00005.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638810	XP_003608431.1	84.921	126	18	1	12	136	3	128	2.52e-59	218
Msa0638810	XP_003608431.1	95.733	375	10	2	119	492	296	665	0.0	736

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638810	sp\|H9BZ66\|ABCG1_PETHY	54.124	388	152	5	105	489	266	630	1.04e-146	437
Msa0638810	sp\|H9BZ66\|ABCG1_PETHY	55.556	126	47	3	31	150	17	139	7.28e-31	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638810	G7JCQ3	84.921	126	18	1	12	136	3	128	1.20e-59	218
Msa0638810	G7JCQ3	95.733	375	10	2	119	492	296	665	0.0	736

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0638810	-0.835165	1.966304e-56	-8.615850e-47
Msa0000800	Msa0638810	0.855242	7.192407e-62	-8.615850e-47
Msa0002690	Msa0638810	-0.814948	1.187932e-51	-8.615850e-47
Msa0002700	Msa0638810	-0.815689	8.129149e-52	-8.615850e-47
Msa0004180	Msa0638810	-0.821321	4.295929e-53	-8.615850e-47
Msa0007570	Msa0638810	-0.825777	3.895098e-54	-8.615850e-47
Msa0007810	Msa0638810	-0.821421	4.073886e-53	-8.615850e-47
Msa0011060	Msa0638810	-0.819602	1.065750e-52	-8.615850e-47
Msa0011100	Msa0638810	-0.805840	1.099416e-49	-8.615850e-47
Msa0011920	Msa0638810	-0.849589	2.934660e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638810	MtrunA17_Chr4g0050291	95.733	375	10	2	119	492	296	665	0.0	736
Msa0638810	MtrunA17_Chr4g0050291	84.921	126	18	1	12	136	3	128	2.32e-63	218
Msa0638810	MtrunA17_Chr4g0050261	65.867	375	115	4	119	488	360	726	2.25e-171	501
Msa0638810	MtrunA17_Chr4g0050261	65.487	113	36	3	25	136	41	151	9.38e-36	141
Msa0638810	MtrunA17_Chr4g0050251	64.362	376	125	3	119	492	319	687	2.06e-168	491
Msa0638810	MtrunA17_Chr4g0050251	66.372	113	35	3	25	136	41	151	3.11e-37	145
Msa0638810	MtrunA17_Chr4g0026731	59.221	385	130	4	120	482	226	605	3.71e-157	459
Msa0638810	MtrunA17_Chr4g0050201	50.137	365	162	7	105	463	190	540	1.24e-115	351
Msa0638810	MtrunA17_Chr4g0050221	49.311	363	168	7	118	475	272	623	4.82e-113	347
Msa0638810	MtrunA17_Chr4g0050221	50.694	144	65	4	30	171	6	145	1.62e-28	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0638810	AT1G17840.1	51.796	334	150	2	130	463	334	656	1.40e-97	309
Msa0638810	AT1G17840.1	49.505	101	47	2	37	136	50	147	3.14e-21	97.8
Msa0638810	AT3G21090.1	42.120	368	197	5	116	483	303	654	4.28e-88	284
Msa0638810	AT3G21090.1	40.769	130	65	5	12	136	1	123	1.02e-18	89.7
Msa0638810	AT1G51460.1	39.118	340	190	4	144	483	327	649	6.09e-78	257
Msa0638810	AT1G51460.1	41.121	107	60	2	32	137	5	109	2.96e-16	82.0
Msa0638810	AT1G51500.1	40.270	370	202	7	116	483	303	655	1.69e-76	253
Msa0638810	AT1G51500.1	38.686	137	80	3	33	167	20	154	2.81e-19	91.7
Msa0638810	AT2G28070.2	29.851	335	223	3	123	456	385	708	4.90e-49	179
Msa0638810	AT2G28070.2	38.235	102	59	2	34	134	111	209	1.68e-14	76.6

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Find 102 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGAAAGAGATGAAAT+TGG	0.358441	4_3:-34406490	Msa0638810:CDS
AACAAACAAGCATTGGCTTA+TGG	0.366572	4_3:-34408181	Msa0638810:CDS
AACATAGGGTATCTCCAAAA+TGG	0.327437	4_3:+34406574	None:intergenic
AACTTCTACATGTAAAGGAG+TGG	0.634426	4_3:+34406228	None:intergenic
AAGAATTGATTTGCTTTCGT+TGG	0.440800	4_3:+34409315	None:intergenic
AAGACTAGTCTTGTTTGCCT+AGG	0.540525	4_3:+34406265	None:intergenic
AATGATTTGGATAAAAGTAA+CGG	0.521433	4_3:-34407413	Msa0638810:CDS
AATGGATTAGGAAGATCATT+TGG	0.408384	4_3:+34406592	None:intergenic
AATTCAAGGGATTATGATGT+TGG	0.540072	4_3:-34406635	Msa0638810:CDS
ACACTTCTTGATGCTTTAGC+AGG	0.497837	4_3:-34409220	Msa0638810:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGCAAATCAATTCTTCA+GGG	-	chr4_3:34406384-34406403	Msa0638810:CDS	30.0%
AAGTTAGTTATTTGCATGCA+TGG	+	chr4_3:34406516-34406535	None:intergenic	30.0%
AGGAAGTTATATATAGCAGT+TGG	+	chr4_3:34406539-34406558	None:intergenic	30.0%
ATGTATCCGGTCATAATTAT+AGG	+	chr4_3:34406780-34406799	None:intergenic	30.0%
TCTTCGGTCGTAAAATAAAT+AGG	-	chr4_3:34407023-34407042	Msa0638810:intron	30.0%
AAGTCAAAACTATTTCCATG+TGG	-	chr4_3:34407137-34407156	Msa0638810:intron	30.0%
AAAAACCAGTTAAAACCACA+TGG	+	chr4_3:34407155-34407174	None:intergenic	30.0%
ATATGTATTTCAGGGAGATT+AGG	-	chr4_3:34407450-34407469	Msa0638810:CDS	30.0%
TCAATGTTAGGATATTGAGA+TGG	-	chr4_3:34407884-34407903	Msa0638810:intron	30.0%
GATATCAATTGCTTGTTCAA+TGG	+	chr4_3:34407934-34407953	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	34406222	34409494	34406222	ID=Msa0638810;Name=Msa0638810
chr4_3	mRNA	34406222	34409494	34406222	ID=Msa0638810-mRNA-1;Parent=Msa0638810;Name=Msa0638810-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0.2\|0\|1\|1\|1\|6\|0\|492
chr4_3	exon	34409221	34409494	34409221	ID=Msa0638810-mRNA-1:exon:7947;Parent=Msa0638810-mRNA-1
chr4_3	exon	34408174	34408253	34408174	ID=Msa0638810-mRNA-1:exon:7946;Parent=Msa0638810-mRNA-1
chr4_3	exon	34407679	34407822	34407679	ID=Msa0638810-mRNA-1:exon:7945;Parent=Msa0638810-mRNA-1
chr4_3	exon	34407403	34407594	34407403	ID=Msa0638810-mRNA-1:exon:7944;Parent=Msa0638810-mRNA-1
chr4_3	exon	34407225	34407311	34407225	ID=Msa0638810-mRNA-1:exon:7943;Parent=Msa0638810-mRNA-1
chr4_3	exon	34406222	34406923	34406222	ID=Msa0638810-mRNA-1:exon:7942;Parent=Msa0638810-mRNA-1
chr4_3	CDS	34409221	34409494	34409221	ID=Msa0638810-mRNA-1:cds;Parent=Msa0638810-mRNA-1
chr4_3	CDS	34408174	34408253	34408174	ID=Msa0638810-mRNA-1:cds;Parent=Msa0638810-mRNA-1
chr4_3	CDS	34407679	34407822	34407679	ID=Msa0638810-mRNA-1:cds;Parent=Msa0638810-mRNA-1
chr4_3	CDS	34407403	34407594	34407403	ID=Msa0638810-mRNA-1:cds;Parent=Msa0638810-mRNA-1
chr4_3	CDS	34407225	34407311	34407225	ID=Msa0638810-mRNA-1:cds;Parent=Msa0638810-mRNA-1
chr4_3	CDS	34406222	34406923	34406222	ID=Msa0638810-mRNA-1:cds;Parent=Msa0638810-mRNA-1

Gene Sequence

>Msa0638810

ATGGCTTCCCTTCTTTCATCTGTGCCTAATATCCTAGAGATTGAAAGCGCAAGAGAAGAGGTAGGAGCATCAAAAAAGATGAATGGAGGAGAAGAGAAGGGTATTTGTTTAACTTGGAAAGATCTATGGGTTACTGTTTCTGCTTCAACAGGAAAAACCAACGAAAGCAAATCAATTCTTCAGGGTCTGACTGGTTATGCAAAGCCAGGTCAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGGAGATTAGGTTCAAACACAAGACAATCAGGGGATATTTTGATCAATGGCAACAAACAAGCATTGGCTTATGGAACCTCGGATATTGAGATGGATTTAGCAGAGACTGGAACAATTTCCATTGAACAAGCAATTGATATCCTTGTGAGCTCATTTTCTTCATCCGAAAGAAACCAAGAAATTAAAAATGAAGTATCAATATTGTCTATAGTATTGTCTTTAAAGGATAATAATTCAACATACAAGAAAAAACATGCTGGCTTCCTCAATCAGTGCTTAGTTCTCACCAGAAGATCTTTTGTGAACATGTTTCGTGATCTTGGCTATTATTGGTTACGCCTTGGCATATATATTGCGTTGGCTATAAGTTTAGCCACTGTCTTTAATGATTTGGATAAAAGTAACGGCTCAATTCAGGATAGAGGTTCACTTCTTATGTTTGTGTTTTCATTCCTAACTTTCATGACCATTGGTGGATTCCCTTCTTATGTGGAGGACATGAAGGTATTTGAACGTGAAAGATTAAATGGACACTATGGTGTAACTGCATATGTAATTGGAAACACACTTTCAGCTATTCCATATTTGCTGATGATTTCGGTCATTCCTGGAGCCATAGCATATTACCCTCCAGGTCTTCAAAAAGGATTTGAGCACTTCATATATTTTATCTGTGCTCTATTTTCTTGTCTAATGTTAGTGGAGAGTCTTATGATGATAGTTGCTAGCATTGTCCCTGATTTTCTAATGGGAATCATAACTGGTGCTGGAATTCAAGGGATTATGATGTTGGCTGGTGGATTCTTTAGATTGCCAAATGATCTTCCTAATCCATTTTGGAGATACCCTATGTTCTATATTGCCTTTCATAGGTATGCTTTTCAAGGATCTTATAAGAATGAGTTTGAAGGACTAAAATTTGAAAGAGATGAAATTGGTGGTGGTGGTGGTGGTGGATCACTCAATTACATTAGTGGTGAAGAGATTCTAAGAAATAAATTTCAAGTAGATATGAGTTACTCAAAGTGGGTTGATCTTGGAGTATTGTTGGGTATGATCGTTCTATATCGAGTTGTGTTTTTGATTATTATCAAAACTACTGAGAAGCTTAAACCTATTATGTCACTTATGTCGGTGTCTCCTAGGCAAACAAGACTAGTCTTGGAGAATCCTAGTGCCACTCCTTTACATGTAGAAGTTGTATAA

Protein sequence

>Msa0638810

MASLLSSVPNILEIESAREEVGASKKMNGGEEKGICLTWKDLWVTVSASTGKTNESKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSNTRQSGDILINGNKQALAYGTSDIEMDLAETGTISIEQAIDILVSSFSSSERNQEIKNEVSILSIVLSLKDNNSTYKKKHAGFLNQCLVLTRRSFVNMFRDLGYYWLRLGIYIALAISLATVFNDLDKSNGSIQDRGSLLMFVFSFLTFMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTLSAIPYLLMISVIPGAIAYYPPGLQKGFEHFIYFICALFSCLMLVESLMMIVASIVPDFLMGIITGAGIQGIMMLAGGFFRLPNDLPNPFWRYPMFYIAFHRYAFQGSYKNEFEGLKFERDEIGGGGGGGSLNYISGEEILRNKFQVDMSYSKWVDLGVLLGMIVLYRVVFLIIIKTTEKLKPIMSLMSVSPRQTRLVLENPSATPLHVEVV*