AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560280 MtrunA17_Chr4g0050291 96.852 667 17 1 12 678 3 665 0.0 1335
Msa0560280 MtrunA17_Chr4g0050251 74.198 655 160 5 25 678 41 687 0.0 995
Msa0560280 MtrunA17_Chr4g0050261 71.079 695 147 7 25 674 41 726 0.0 986
Msa0560280 MtrunA17_Chr4g0026731 69.900 598 155 4 92 668 12 605 0.0 864
Msa0560280 MtrunA17_Chr4g0050221 59.904 626 234 9 30 653 6 616 0.0 754
Msa0560280 MtrunA17_Chr4g0050201 58.484 554 211 6 99 648 2 540 0.0 674
Msa0560280 MtrunA17_Chr6g0477811 52.241 647 283 6 37 672 47 678 0.0 654
Msa0560280 MtrunA17_Chr4g0039261 45.300 649 325 8 26 661 20 651 0.0 573
Msa0560280 MtrunA17_Chr4g0039251 45.095 683 341 10 6 669 35 702 0.0 558
Msa0560280 MtrunA17_Chr4g0039231 41.680 631 293 8 101 669 2 619 1.50e-159 474
Msa0560280 MtrunA17_Chr2g0327241 37.803 619 351 10 34 640 104 700 8.05e-130 400
Msa0560280 MtrunA17_Chr1g0176451 32.734 556 327 15 49 582 17 547 2.24e-77 258
Msa0560280 MtrunA17_Chr1g0213091 29.238 643 381 14 54 638 117 743 2.76e-76 259
Msa0560280 MtrunA17_Chr7g0263351 29.412 544 360 8 52 580 120 654 1.43e-75 257
Msa0560280 MtrunA17_Chr8g0384391 29.264 598 393 11 57 641 54 634 4.09e-75 254
Msa0560280 MtrunA17_Chr2g0316301 30.221 589 376 12 56 640 70 627 1.80e-74 252
Msa0560280 MtrunA17_Chr1g0208391 29.790 668 406 18 30 676 66 691 8.07e-74 252
Msa0560280 MtrunA17_Chr7g0267971 32.246 552 334 13 53 580 154 689 1.83e-73 251
Msa0560280 MtrunA17_Chr3g0130331 29.933 598 387 14 57 641 56 634 5.02e-73 248
Msa0560280 MtrunA17_Chr4g0065231 28.041 592 386 12 58 640 74 634 5.31e-71 243
Msa0560280 MtrunA17_Chr1g0176441 30.366 573 357 14 35 582 147 702 3.55e-70 243
Msa0560280 MtrunA17_Chr1g0200651 33.333 495 283 17 20 491 51 521 4.66e-63 221
Msa0560280 MtrunA17_Chr5g0408061 28.846 624 394 16 35 641 45 635 8.53e-62 218
Msa0560280 MtrunA17_Chr1g0198931 29.846 583 357 17 33 589 72 628 3.00e-61 217
Msa0560280 MtrunA17_Chr1g0202431 27.656 593 392 13 59 647 50 609 4.06e-61 215
Msa0560280 MtrunA17_Chr8g0359931 30.478 502 317 9 55 546 62 541 1.63e-57 206
Msa0560280 MtrunA17_Chr5g0446901 32.305 486 292 14 44 510 94 561 1.18e-56 202
Msa0560280 MtrunA17_Chr2g0318061 38.754 289 165 5 55 340 27 306 4.04e-55 192
Msa0560280 MtrunA17_Chr3g0102731 32.688 465 284 11 59 510 98 546 1.88e-54 196
Msa0560280 MtrunA17_Chr8g0393191 41.897 253 140 4 54 304 64 311 1.09e-52 195
Msa0560280 MtrunA17_Chr8g0393191 24.090 357 228 12 310 645 479 813 4.22e-18 89.0
Msa0560280 MtrunA17_Chr2g0331081 28.571 532 337 15 51 567 883 1386 2.15e-50 190
Msa0560280 MtrunA17_Chr2g0331081 24.882 635 396 15 58 640 178 783 1.69e-43 169
Msa0560280 MtrunA17_Chr2g0332241 26.415 583 372 15 10 559 791 1349 3.95e-49 186
Msa0560280 MtrunA17_Chr2g0332241 23.756 623 406 15 58 636 166 763 3.79e-38 152
Msa0560280 MtrunA17_Chr7g0262251 25.287 609 385 15 15 579 771 1353 4.83e-49 186
Msa0560280 MtrunA17_Chr7g0262251 25.452 609 419 12 52 640 168 761 2.57e-40 159
Msa0560280 MtrunA17_Chr2g0332221 27.360 519 334 13 59 559 855 1348 1.71e-48 184
Msa0560280 MtrunA17_Chr2g0332221 24.238 623 403 15 58 636 166 763 1.03e-39 157
Msa0560280 MtrunA17_Chr3g0104621 25.933 536 352 12 51 567 756 1265 2.55e-48 183
Msa0560280 MtrunA17_Chr3g0104621 26.911 628 389 14 55 638 52 653 2.76e-44 171
Msa0560280 MtrunA17_Chr4g0003981 26.834 518 338 12 59 559 866 1359 2.78e-48 183
Msa0560280 MtrunA17_Chr4g0003981 23.680 625 416 13 58 640 172 777 6.24e-35 142
Msa0560280 MtrunA17_Chr7g0261971 26.100 659 420 17 14 641 819 1441 6.60e-48 182
Msa0560280 MtrunA17_Chr7g0261971 25.080 626 406 16 58 640 157 762 2.00e-39 156
Msa0560280 MtrunA17_Chr0c20g0493841 27.061 643 391 15 46 638 154 768 8.54e-48 182
Msa0560280 MtrunA17_Chr0c20g0493841 26.742 531 338 13 53 564 852 1350 8.81e-43 167
Msa0560280 MtrunA17_Chr7g0262241 25.913 575 373 13 14 559 823 1373 1.12e-47 181
Msa0560280 MtrunA17_Chr7g0262241 24.165 629 408 15 58 640 161 766 1.08e-39 157
Msa0560280 MtrunA17_Chr7g0265981 26.471 612 397 15 49 641 873 1450 1.48e-47 181
Msa0560280 MtrunA17_Chr7g0265981 24.519 624 413 11 59 640 184 791 3.55e-42 165
Msa0560280 MtrunA17_Chr8g0340651 28.386 539 329 15 51 567 897 1400 2.36e-47 181
Msa0560280 MtrunA17_Chr8g0340651 25.378 662 417 17 58 674 177 806 7.94e-44 170
Msa0560280 MtrunA17_Chr7g0265991 26.923 624 390 18 49 641 49 637 3.07e-47 177
Msa0560280 MtrunA17_Chr5g0411621 35.691 311 165 8 12 314 25 308 3.15e-47 178
Msa0560280 MtrunA17_Chr5g0411621 25.267 281 198 5 365 645 455 723 5.65e-23 104
Msa0560280 MtrunA17_Chr2g0332211 25.246 610 403 16 51 642 931 1505 7.33e-47 179
Msa0560280 MtrunA17_Chr2g0332211 24.160 625 401 16 58 636 247 844 7.87e-38 151
Msa0560280 MtrunA17_Chr1g0171351 26.602 515 343 11 59 559 894 1387 2.05e-45 175
Msa0560280 MtrunA17_Chr1g0171351 24.960 629 400 19 59 638 176 781 2.19e-37 150
Msa0560280 MtrunA17_Chr4g0062871 26.778 661 408 18 58 667 149 784 1.44e-44 172
Msa0560280 MtrunA17_Chr4g0062871 25.862 522 354 11 51 559 836 1337 1.32e-39 157
Msa0560280 MtrunA17_Chr3g0138261 26.103 544 368 10 49 579 860 1382 1.91e-44 172
Msa0560280 MtrunA17_Chr3g0138261 25.280 625 390 17 58 632 165 762 7.59e-39 154
Msa0560280 MtrunA17_Chr7g0262231 25.670 522 355 9 51 559 875 1376 2.53e-44 171
Msa0560280 MtrunA17_Chr7g0262231 23.855 633 405 14 58 640 161 766 1.29e-39 157
Msa0560280 MtrunA17_Chr4g0003971 25.950 605 386 16 59 641 825 1389 8.31e-44 170
Msa0560280 MtrunA17_Chr4g0003971 25.394 634 394 19 58 640 160 765 1.54e-40 160
Msa0560280 MtrunA17_Chr7g0262261 26.209 641 427 17 28 641 760 1381 1.62e-43 169
Msa0560280 MtrunA17_Chr7g0262261 24.601 626 417 14 52 638 126 735 4.98e-41 161
Msa0560280 MtrunA17_Chr7g0265971 26.149 631 389 18 49 641 865 1456 1.64e-43 169
Msa0560280 MtrunA17_Chr7g0265971 25.041 611 400 12 59 627 178 772 5.02e-42 164
Msa0560280 MtrunA17_Chr7g0261951 25.114 657 429 15 14 641 823 1445 1.79e-43 169
Msa0560280 MtrunA17_Chr7g0261951 24.441 626 410 15 58 640 161 766 1.88e-40 159
Msa0560280 MtrunA17_Chr7g0262221 25.645 581 368 15 18 559 803 1358 2.88e-43 168
Msa0560280 MtrunA17_Chr7g0262221 24.525 632 410 15 58 638 162 777 1.24e-37 150
Msa0560280 MtrunA17_Chr7g0266001 26.003 623 401 14 59 638 63 668 4.31e-43 165
Msa0560280 MtrunA17_Chr1g0148841 25.568 528 348 13 51 559 869 1370 4.84e-43 167
Msa0560280 MtrunA17_Chr1g0148841 26.398 644 375 19 59 641 166 771 9.91e-42 163
Msa0560280 MtrunA17_Chr1g0148811 24.961 649 419 20 19 639 803 1411 6.46e-43 167
Msa0560280 MtrunA17_Chr1g0148811 25.596 629 397 15 59 640 154 758 5.98e-34 139
Msa0560280 MtrunA17_Chr1g0199471 39.163 263 145 7 37 295 501 752 3.11e-42 165
Msa0560280 MtrunA17_Chr4g0069211 27.100 631 381 18 53 638 160 756 1.17e-41 163
Msa0560280 MtrunA17_Chr4g0069211 35.922 206 126 3 53 256 840 1041 9.15e-28 120
Msa0560280 MtrunA17_Chr1g0198291 26.744 516 341 15 59 559 894 1387 2.31e-41 162
Msa0560280 MtrunA17_Chr1g0198291 24.083 627 408 15 59 638 189 794 3.55e-33 137
Msa0560280 MtrunA17_Chr5g0429871 27.391 460 276 11 59 492 667 1094 7.26e-41 160
Msa0560280 MtrunA17_Chr5g0429871 24.610 577 377 12 99 636 18 575 1.69e-40 159
Msa0560280 MtrunA17_Chr7g0264441 38.934 244 142 6 55 295 275 514 1.79e-40 159
Msa0560280 MtrunA17_Chr7g0261981 25.278 629 401 19 58 640 161 766 6.21e-40 158
Msa0560280 MtrunA17_Chr7g0261981 24.585 602 374 18 59 641 861 1401 6.31e-36 145
Msa0560280 MtrunA17_Chr7g0265961 25.316 632 382 19 59 638 182 775 1.03e-39 157
Msa0560280 MtrunA17_Chr7g0265961 24.633 613 390 17 49 641 821 1381 2.01e-35 144
Msa0560280 MtrunA17_Chr1g0180971 36.641 262 153 6 37 295 397 648 2.85e-39 154
Msa0560280 MtrunA17_Chr4g0004021 27.610 431 273 12 59 473 863 1270 6.43e-37 148
Msa0560280 MtrunA17_Chr4g0004021 23.186 634 408 13 58 640 170 775 8.60e-35 142
Msa0560280 MtrunA17_Chr4g0028621 33.588 262 161 6 37 295 491 742 2.47e-33 137
Msa0560280 MtrunA17_Chr3g0093331 35.238 210 130 3 79 285 18 224 1.15e-32 127
Msa0560280 MtrunA17_Chr4g0050241 31.987 297 65 6 359 655 9 168 6.14e-32 122
Msa0560280 MtrunA17_Chr6g0472481 32.301 226 134 4 59 269 13 234 1.50e-29 118
Msa0560280 MtrunA17_Chr7g0262321 27.386 482 275 21 36 481 540 982 1.01e-27 119
Msa0560280 MtrunA17_Chr7g0262321 23.429 525 368 13 159 667 18 524 5.62e-19 92.0
Msa0560280 MtrunA17_Chr4g0026741 53.774 106 35 5 1 94 1 104 3.63e-22 93.2
Msa0560280 MtrunA17_Chr4g0050191 60.938 64 21 1 29 92 33 92 1.23e-15 73.2
Msa0560280 MtrunA17_Chr7g0215001 23.980 392 236 12 206 559 1 368 2.87e-14 75.1
Msa0560280 MtrunA17_Chr4g0047831 41.860 86 47 1 175 260 1 83 2.94e-14 68.9
Msa0560280 MtrunA17_Chr7g0249091 28.195 266 151 9 24 268 73 319 3.80e-14 74.3
Msa0560280 MtrunA17_Chr4g0061601 30.415 217 130 10 59 268 404 606 4.40e-14 75.9
Msa0560280 MtrunA17_Chr4g0050231 72.549 51 8 1 41 91 4 48 4.60e-14 67.4
Msa0560280 MtrunA17_Chr4g0041871 27.972 286 167 14 3 268 295 561 5.56e-14 75.9
Msa0560280 MtrunA17_Chr4g0041871 29.493 217 131 7 59 268 1023 1224 1.29e-13 74.7
Msa0560280 MtrunA17_Chr7g0238421 27.309 249 135 8 69 312 14 221 2.49e-13 70.1
Msa0560280 MtrunA17_Chr7g0227391 29.146 199 117 7 59 247 442 626 3.82e-13 72.8
Msa0560280 MtrunA17_Chr3g0093041 30.168 179 104 5 71 243 207 370 6.43e-13 72.0
Msa0560280 MtrunA17_Chr6g0481921 25.796 314 203 10 59 359 288 584 9.35e-13 72.0
Msa0560280 MtrunA17_Chr3g0132711 30.000 190 112 5 60 243 210 384 1.30e-12 70.9
Msa0560280 MtrunA17_Chr1g0194031 27.413 259 163 13 59 304 401 647 1.67e-12 70.9
Msa0560280 MtrunA17_Chr7g0257321 48.214 56 24 1 37 92 3 53 2.20e-12 62.4
Msa0560280 MtrunA17_Chr5g0412741 29.464 224 125 8 59 268 473 677 3.54e-12 69.7
Msa0560280 MtrunA17_Chr1g0193991 31.282 195 116 10 59 247 406 588 4.57e-12 69.7
Msa0560280 MtrunA17_Chr7g0257341 32.821 195 112 6 24 214 541 720 5.22e-12 69.7
Msa0560280 MtrunA17_Chr7g0257341 26.733 202 126 7 49 243 1468 1654 3.13e-11 67.0
Msa0560280 MtrunA17_Chr4g0039221 53.333 60 26 2 35 94 7 64 8.40e-12 61.2
Msa0560280 MtrunA17_Chr7g0264631 33.862 189 101 10 68 247 1107 1280 9.38e-12 68.9
Msa0560280 MtrunA17_Chr3g0119381 31.799 239 133 13 57 280 414 637 1.02e-11 68.6
Msa0560280 MtrunA17_Chr6g0452081 33.333 186 102 9 70 247 51 222 1.06e-11 65.5
Msa0560280 MtrunA17_Chr2g0285301 26.923 234 147 7 59 280 381 602 1.45e-11 68.2
Msa0560280 MtrunA17_Chr5g0433051 28.194 227 127 8 57 269 479 683 2.10e-11 67.4
Msa0560280 MtrunA17_Chr1g0180601 32.836 201 105 11 59 247 1072 1254 2.27e-11 67.4
Msa0560280 MtrunA17_Chr6g0451911 28.854 253 150 11 70 309 389 624 3.22e-11 67.0
Msa0560280 MtrunA17_Chr5g0433071 27.273 220 138 6 57 269 481 685 3.62e-11 66.6
Msa0560280 MtrunA17_Chr3g0123411 29.464 224 128 10 59 271 922 1126 4.15e-11 66.6
Msa0560280 MtrunA17_Chr6g0463151 25.215 349 200 17 5 341 408 707 4.79e-11 66.6
Msa0560280 MtrunA17_Chr6g0452171 29.956 227 127 9 59 272 1037 1244 5.25e-11 66.2
Msa0560280 MtrunA17_Chr4g0047821 58.696 46 19 0 54 99 45 90 6.28e-11 59.3
Msa0560280 MtrunA17_Chr6g0451881 30.102 196 119 5 59 247 1024 1208 6.76e-11 65.9
Msa0560280 MtrunA17_Chr6g0452041 30.102 196 119 5 59 247 1036 1220 7.02e-11 65.9
Msa0560280 MtrunA17_Chr6g0452141 31.313 198 114 9 59 247 1034 1218 7.07e-11 65.9
Msa0560280 MtrunA17_Chr6g0452141 31.188 202 119 10 70 262 390 580 9.62e-11 65.5
Msa0560280 MtrunA17_Chr6g0452061 31.222 221 132 8 59 272 546 753 7.37e-11 65.5
Msa0560280 MtrunA17_Chr6g0452111 29.464 224 132 8 59 272 1035 1242 7.97e-11 65.9
Msa0560280 MtrunA17_Chr7g0233901 28.959 221 140 6 58 272 1011 1220 8.78e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560280 AT1G17840.1 52.859 647 278 6 37 672 50 680 0.0 636
Msa0560280 AT3G21090.1 45.778 675 328 12 12 669 1 654 0.0 582
Msa0560280 AT1G51500.1 44.086 651 335 9 33 669 20 655 0.0 539
Msa0560280 AT1G51460.1 41.441 666 341 10 32 669 5 649 4.08e-174 513
Msa0560280 AT2G28070.2 36.408 618 363 9 34 641 111 708 3.57e-130 401
Msa0560280 AT2G28070.1 36.408 618 363 9 34 641 111 708 3.57e-130 401
Msa0560280 AT3G55110.1 30.926 540 358 8 49 580 81 613 2.21e-79 267
Msa0560280 AT2G13610.1 29.264 598 395 12 54 641 57 636 6.98e-79 264
Msa0560280 AT3G55130.1 30.435 552 348 9 52 580 92 630 2.48e-78 265
Msa0560280 AT2G37360.1 31.066 544 343 9 56 580 130 660 1.03e-77 264
Msa0560280 AT2G01320.8 31.250 592 364 17 11 585 44 609 2.17e-77 260
Msa0560280 AT2G01320.5 31.250 592 364 17 11 585 44 609 2.17e-77 260
Msa0560280 AT2G01320.1 31.250 592 364 17 11 585 44 609 7.36e-77 261
Msa0560280 AT2G01320.4 31.250 592 364 17 11 585 44 609 7.36e-77 261
Msa0560280 AT3G53510.1 32.963 540 329 9 56 580 123 644 8.65e-77 261
Msa0560280 AT2G01320.2 31.250 592 364 17 11 585 44 609 1.16e-76 260
Msa0560280 AT2G01320.3 31.250 592 364 17 11 585 44 609 1.49e-76 260
Msa0560280 AT3G55100.1 30.970 536 341 11 57 580 49 567 5.76e-76 257
Msa0560280 AT3G55100.2 30.970 536 341 11 57 580 49 567 5.76e-76 257
Msa0560280 AT5G13580.1 30.514 603 367 11 1 579 57 631 3.09e-75 256
Msa0560280 AT5G19410.2 27.598 587 373 14 59 635 75 619 2.33e-72 246
Msa0560280 AT5G19410.1 27.598 587 373 14 59 635 66 610 2.63e-72 246
Msa0560280 AT3G55090.1 29.421 605 369 13 4 579 65 640 3.81e-72 248
Msa0560280 AT5G06530.2 30.795 591 358 16 20 580 139 708 3.72e-70 243
Msa0560280 AT5G06530.1 30.795 591 358 16 20 580 139 708 3.72e-70 243
Msa0560280 AT5G06530.3 31.884 552 339 14 20 546 139 678 4.23e-70 242
Msa0560280 AT2G01320.7 32.179 491 294 14 11 485 44 511 1.63e-67 231
Msa0560280 AT2G01320.6 32.179 491 294 14 11 485 44 511 1.63e-67 231
Msa0560280 AT2G39350.1 29.891 552 348 11 55 579 105 644 2.50e-67 235
Msa0560280 AT1G53270.1 28.549 634 386 13 20 640 2 581 3.23e-67 231
Msa0560280 AT4G25750.1 28.451 594 361 18 59 641 30 570 8.07e-66 228
Msa0560280 AT5G52860.1 28.836 593 370 15 53 641 38 582 1.89e-65 227
Msa0560280 AT1G31770.1 29.372 589 382 14 54 635 76 637 4.23e-65 227
Msa0560280 AT5G06530.4 32.323 495 299 13 76 546 1 483 2.85e-64 221
Msa0560280 AT1G71960.1 30.732 615 369 22 52 641 76 658 9.19e-62 218
Msa0560280 AT4G27420.1 31.663 499 320 9 55 546 62 546 4.55e-61 216
Msa0560280 AT3G25620.2 29.153 590 366 19 33 595 64 628 4.36e-60 214
Msa0560280 AT4G15233.7 26.180 657 432 14 42 669 133 765 1.60e-54 202
Msa0560280 AT4G15233.7 26.587 583 377 17 23 585 768 1319 6.21e-47 180
Msa0560280 AT2G29940.1 26.842 570 367 11 31 573 813 1359 3.62e-54 201
Msa0560280 AT2G29940.1 25.469 640 401 15 58 647 174 787 1.11e-47 182
Msa0560280 AT4G15233.5 26.389 648 423 15 42 657 71 696 7.27e-54 201
Msa0560280 AT4G15233.5 26.766 538 346 16 68 585 685 1194 1.16e-43 169
Msa0560280 AT4G15233.4 26.389 648 423 15 42 657 71 696 7.27e-54 201
Msa0560280 AT4G15233.4 26.766 538 346 16 68 585 685 1194 1.16e-43 169
Msa0560280 AT4G15233.2 25.457 656 424 13 42 650 133 770 1.09e-53 200
Msa0560280 AT4G15233.2 26.516 577 369 17 23 577 786 1329 2.40e-45 175
Msa0560280 AT4G15233.3 25.481 675 432 14 42 669 71 721 1.15e-53 200
Msa0560280 AT4G15233.3 26.587 583 377 17 23 585 724 1275 5.15e-47 180
Msa0560280 AT4G15233.6 25.481 675 432 14 42 669 71 721 1.15e-53 200
Msa0560280 AT4G15233.6 26.587 583 377 17 23 585 724 1275 5.15e-47 180
Msa0560280 AT4G15233.1 25.481 675 432 14 42 669 133 783 1.19e-53 200
Msa0560280 AT4G15233.1 26.587 583 377 17 23 585 786 1337 7.24e-47 179
Msa0560280 AT3G13220.1 29.307 563 343 18 57 594 104 636 4.39e-53 194
Msa0560280 AT4G15215.11 26.275 647 407 15 42 640 131 755 2.83e-52 196
Msa0560280 AT4G15215.11 25.659 569 368 14 33 579 801 1336 2.76e-47 181
Msa0560280 AT4G15215.9 26.275 647 407 15 42 640 128 752 2.96e-52 196
Msa0560280 AT4G15215.9 25.659 569 368 14 33 579 798 1333 2.97e-47 181
Msa0560280 AT4G15215.4 26.275 647 407 15 42 640 128 752 2.96e-52 196
Msa0560280 AT4G15215.4 25.659 569 368 14 33 579 798 1333 2.97e-47 181
Msa0560280 AT4G15215.5 26.275 647 407 15 42 640 128 752 2.96e-52 196
Msa0560280 AT4G15215.5 25.659 569 368 14 33 579 798 1333 2.97e-47 181
Msa0560280 AT4G15215.3 26.275 647 407 15 42 640 128 752 2.96e-52 196
Msa0560280 AT4G15215.3 25.659 569 368 14 33 579 798 1333 2.97e-47 181
Msa0560280 AT4G15215.2 26.275 647 407 15 42 640 128 752 2.96e-52 196
Msa0560280 AT4G15215.2 25.659 569 368 14 33 579 798 1333 2.97e-47 181
Msa0560280 AT4G15215.8 26.584 647 398 16 42 640 128 745 3.68e-52 196
Msa0560280 AT4G15215.8 25.659 569 368 14 33 579 791 1326 3.30e-47 181
Msa0560280 AT4G15215.10 26.584 647 398 16 42 640 128 745 3.68e-52 196
Msa0560280 AT4G15215.10 25.659 569 368 14 33 579 791 1326 3.30e-47 181
Msa0560280 AT4G15215.6 26.584 647 398 16 42 640 128 745 3.68e-52 196
Msa0560280 AT4G15215.6 25.659 569 368 14 33 579 791 1326 3.30e-47 181
Msa0560280 AT4G15215.7 26.584 647 398 16 42 640 128 745 3.68e-52 196
Msa0560280 AT4G15215.7 25.659 569 368 14 33 579 791 1326 3.30e-47 181
Msa0560280 AT1G59870.1 28.008 532 340 12 51 567 886 1389 4.47e-52 195
Msa0560280 AT1G59870.1 24.803 633 401 15 58 640 185 792 1.02e-40 160
Msa0560280 AT4G15215.1 26.584 647 398 16 42 640 131 748 4.73e-52 195
Msa0560280 AT4G15215.1 25.659 569 368 14 33 579 794 1329 3.65e-47 180
Msa0560280 AT4G15236.1 24.962 653 431 11 42 650 131 768 1.05e-50 191
Msa0560280 AT4G15236.1 26.689 592 379 18 16 585 777 1335 4.60e-48 183
Msa0560280 AT2G37280.2 26.301 692 429 20 14 650 104 769 2.55e-50 190
Msa0560280 AT2G37280.2 27.106 546 346 14 33 555 809 1325 1.34e-45 176
Msa0560280 AT2G37280.1 26.301 692 429 20 14 650 104 769 3.32e-50 189
Msa0560280 AT2G37280.1 27.170 530 342 14 54 567 834 1335 2.50e-46 178
Msa0560280 AT3G25620.1 36.196 326 188 9 33 343 64 384 7.25e-50 181
Msa0560280 AT4G15233.8 25.333 675 424 15 42 669 133 774 1.66e-49 187
Msa0560280 AT4G15233.8 26.587 583 377 17 23 585 777 1328 8.58e-47 179
Msa0560280 AT3G53480.1 26.340 653 383 20 46 638 175 789 1.71e-49 187
Msa0560280 AT3G53480.1 25.284 617 388 17 15 590 816 1400 5.82e-45 174
Msa0560280 AT1G15210.1 27.151 523 340 13 59 567 867 1362 3.95e-49 186
Msa0560280 AT1G15210.1 24.528 636 410 15 58 646 183 795 9.02e-40 158
Msa0560280 AT4G15230.2 25.194 643 415 14 42 638 134 756 1.03e-48 185
Msa0560280 AT4G15230.2 26.460 548 350 17 33 556 804 1322 3.04e-45 174
Msa0560280 AT3G16340.2 26.642 533 346 13 51 567 828 1331 1.18e-48 185
Msa0560280 AT3G16340.2 24.286 560 370 11 58 578 161 705 1.30e-36 148
Msa0560280 AT3G16340.1 26.642 533 346 13 51 567 833 1336 1.25e-48 185
Msa0560280 AT3G16340.1 24.150 559 377 9 58 578 161 710 7.94e-38 152
Msa0560280 AT4G15230.3 25.194 643 415 14 42 638 134 756 1.39e-48 185
Msa0560280 AT4G15230.3 25.442 566 373 16 33 579 804 1339 2.73e-46 177
Msa0560280 AT4G15230.1 25.194 643 415 14 42 638 134 756 1.39e-48 185
Msa0560280 AT4G15230.1 25.442 566 373 16 33 579 804 1339 2.73e-46 177
Msa0560280 AT4G15230.4 25.116 645 413 14 42 638 55 677 1.68e-48 184
Msa0560280 AT4G15230.4 25.442 566 373 16 33 579 725 1260 3.26e-46 177
Msa0560280 AT1G15520.1 26.644 593 378 17 13 574 796 1362 8.45e-48 182
Msa0560280 AT1G15520.1 24.760 626 408 14 58 640 168 773 3.91e-43 168
Msa0560280 AT2G37280.3 27.170 530 342 14 54 567 863 1364 3.43e-46 177
Msa0560280 AT2G37280.3 25.243 721 429 21 14 650 104 798 4.11e-45 174
Msa0560280 AT2G37280.4 27.170 530 342 14 54 567 676 1177 3.50e-46 177
Msa0560280 AT2G37280.4 26.190 630 389 17 71 650 8 611 3.19e-45 174
Msa0560280 AT1G15520.2 24.320 625 412 12 58 640 168 773 5.97e-43 167
Msa0560280 AT1G15520.2 28.247 485 292 16 13 467 796 1254 1.10e-38 154
Msa0560280 AT1G53390.1 36.981 265 154 6 37 298 507 761 2.56e-42 165
Msa0560280 AT2G36380.1 25.755 629 399 14 59 640 188 795 9.21e-42 164
Msa0560280 AT2G36380.1 25.142 529 353 13 49 559 869 1372 3.93e-38 153
Msa0560280 AT2G37010.2 36.585 287 161 8 37 320 484 752 3.37e-41 162
Msa0560280 AT2G37010.1 36.585 287 161 8 37 320 484 752 3.37e-41 162
Msa0560280 AT2G26910.1 25.509 639 401 17 51 640 143 755 4.41e-41 162
Msa0560280 AT2G26910.1 24.578 533 366 9 51 566 837 1350 7.67e-40 158
Msa0560280 AT3G30842.1 27.647 510 312 15 44 524 826 1307 4.69e-41 162
Msa0560280 AT3G30842.1 25.269 558 350 14 58 564 160 701 4.15e-39 155
Msa0560280 AT1G66950.1 25.552 634 394 14 59 640 190 797 4.03e-40 159
Msa0560280 AT1G66950.1 24.294 531 355 13 49 559 870 1373 5.00e-37 149
Msa0560280 AT5G60740.1 33.588 262 161 6 37 295 499 750 4.56e-33 137
Msa0560280 AT3G21080.1 34.722 144 79 4 510 648 106 239 6.20e-16 78.6
Msa0560280 AT5G61700.2 28.218 202 126 5 54 248 610 799 3.00e-14 77.0
Msa0560280 AT5G61700.4 28.218 202 126 5 54 248 610 799 3.00e-14 77.0
Msa0560280 AT3G47730.1 27.863 262 154 8 1 243 476 721 8.75e-14 75.5
Msa0560280 AT5G61700.1 27.919 197 119 6 54 243 610 790 2.38e-13 74.3
Msa0560280 AT1G70610.2 27.059 255 154 9 53 295 285 519 2.74e-13 73.2
Msa0560280 AT1G27940.1 30.412 194 119 6 59 247 388 570 2.77e-13 74.3
Msa0560280 AT1G27940.1 29.167 216 133 8 59 268 1021 1222 3.04e-11 67.4
Msa0560280 AT1G27940.2 30.412 194 119 6 59 247 174 356 3.29e-13 73.9
Msa0560280 AT1G27940.2 29.167 216 133 8 59 268 807 1008 2.91e-11 67.4
Msa0560280 AT1G70610.1 27.059 255 154 9 53 295 466 700 3.97e-13 73.2
Msa0560280 AT5G39040.1 30.638 235 137 11 56 282 410 626 4.54e-13 72.8
Msa0560280 AT1G28010.1 30.412 194 119 7 59 247 389 571 6.30e-13 73.2
Msa0560280 AT5G61690.2 30.366 191 110 7 60 243 548 722 8.26e-13 72.4
Msa0560280 AT4G33460.1 27.869 244 152 7 35 277 38 258 1.26e-12 69.3
Msa0560280 AT5G61730.2 27.863 262 154 10 1 243 478 723 1.61e-12 71.6
Msa0560280 AT5G61730.1 30.890 191 109 7 60 243 539 713 2.38e-12 70.9
Msa0560280 AT2G41700.2 32.308 195 113 7 24 214 466 645 2.65e-12 71.2
Msa0560280 AT2G41700.2 26.633 199 124 6 52 243 1424 1607 5.52e-11 66.6
Msa0560280 AT3G47750.1 25.269 186 124 5 54 234 630 805 3.15e-12 70.5
Msa0560280 AT2G41700.1 32.308 195 113 7 24 214 536 715 4.18e-12 70.5
Msa0560280 AT2G41700.1 26.633 199 124 6 52 243 1466 1649 5.92e-11 66.6
Msa0560280 AT3G47780.1 25.128 195 127 6 54 243 628 808 4.96e-12 70.1
Msa0560280 AT3G47790.2 25.405 185 125 4 54 234 482 657 5.27e-12 69.7
Msa0560280 AT5G61740.3 25.000 236 153 8 13 243 427 643 5.94e-12 69.7
Msa0560280 AT3G47790.3 25.405 185 125 4 54 234 601 776 6.05e-12 69.7
Msa0560280 AT3G28390.1 29.412 221 136 6 59 272 997 1204 8.97e-12 69.3
Msa0560280 AT3G28390.1 32.178 202 117 10 70 262 375 565 1.01e-11 68.9
Msa0560280 AT3G47790.1 25.773 194 127 5 54 243 601 781 8.99e-12 68.9
Msa0560280 AT2G47000.4 30.233 215 125 11 40 247 387 583 1.04e-11 68.9
Msa0560280 AT2G47000.3 30.233 215 125 11 40 247 387 583 1.08e-11 68.9
Msa0560280 AT2G47000.7 30.233 215 125 11 40 247 387 583 1.08e-11 68.9
Msa0560280 AT4G28620.1 29.744 195 123 5 57 247 452 636 1.09e-11 68.6
Msa0560280 AT3G47770.1 26.141 241 145 10 5 224 539 767 1.12e-11 68.9
Msa0560280 AT5G61740.2 26.190 210 135 7 13 217 532 726 1.23e-11 68.6
Msa0560280 AT3G47770.2 26.141 241 145 10 5 224 565 793 1.36e-11 68.6
Msa0560280 AT2G47000.2 30.233 215 125 11 40 247 387 583 1.42e-11 68.6
Msa0560280 AT5G61740.1 26.190 210 135 7 13 217 566 760 1.43e-11 68.6
Msa0560280 AT1G10680.2 31.351 185 107 9 70 247 389 560 1.67e-11 68.2
Msa0560280 AT2G47000.6 30.233 215 125 11 40 247 387 583 1.83e-11 68.2
Msa0560280 AT2G47000.5 30.233 215 125 11 40 247 387 583 1.83e-11 68.2
Msa0560280 AT2G47000.1 30.233 215 125 11 40 247 387 583 1.83e-11 68.2
Msa0560280 AT5G61690.1 29.016 193 109 7 60 243 548 721 1.89e-11 68.2
Msa0560280 AT1G10680.1 31.351 185 107 9 70 247 389 560 1.94e-11 68.2
Msa0560280 AT3G28360.1 30.198 202 121 9 70 262 374 564 2.24e-11 67.8
Msa0560280 AT3G28380.1 32.020 203 118 10 69 262 386 577 2.98e-11 67.4
Msa0560280 AT3G28415.1 29.108 213 125 8 70 272 1004 1200 4.44e-11 67.0
Msa0560280 AT3G47760.1 26.316 171 107 4 54 217 589 747 4.58e-11 66.6
Msa0560280 AT3G47760.3 26.316 171 107 4 54 217 629 787 5.07e-11 66.6
Msa0560280 AT4G25960.1 29.808 208 120 10 70 268 429 619 5.37e-11 66.6
Msa0560280 AT3G28415.2 29.108 213 125 8 70 272 1012 1208 5.50e-11 66.6
Msa0560280 AT3G47760.2 26.316 171 107 4 54 217 599 757 5.70e-11 66.6
Msa0560280 AT1G02530.2 29.091 220 138 9 57 271 383 589 6.48e-11 66.2
Msa0560280 AT1G02530.1 29.091 220 138 9 57 271 383 589 7.82e-11 66.2

Find 136 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTAACTTGGAAAGATTTA+TGG 0.118017 4_1:-59545994 Msa0560280:CDS
GTCTATAGTATTGTCTTTAA+AGG 0.148699 4_1:-59543444 Msa0560280:intron
ATGATCTTCCTAATCCATTT+TGG 0.156981 4_1:-59542354 Msa0560280:CDS
GATATCAATTGCTTGTTCTA+TGG 0.227852 4_1:+59543529 None:intergenic
ATTGGAGGGTGGGGTGTTAA+AGG 0.234899 4_1:-59544537 Msa0560280:CDS
ACTGAAATCATCAGCAAATA+TGG 0.242245 4_1:+59542592 None:intergenic
AACATAGGGTATTTCCAAAA+TGG 0.259735 4_1:+59542340 None:intergenic
AGCCACTGTCTTTAATGATT+TGG 0.262428 4_1:-59543192 Msa0560280:CDS
TTTAATTTCTTGGTTTCTTT+CGG 0.280423 4_1:+59543484 None:intergenic
TACCCTCCAGGTCTTCAAAA+AGG 0.282844 4_1:-59542547 Msa0560280:CDS
CTTTCAATCTCTAGGATATT+AGG 0.283672 4_1:+59546076 None:intergenic
ATGATTCCCATTAGAAAATC+AGG 0.291192 4_1:+59542436 None:intergenic
TTTGAACGTGAAAGACTAAA+TGG 0.294897 4_1:-59542664 Msa0560280:CDS
AATAGCTTCCTTGGACAAAA+AGG 0.296864 4_1:-59544388 Msa0560280:CDS
TGCAAAGCCTGGTCAGCTTT+TGG 0.303335 4_1:-59545903 Msa0560280:CDS
AAGACAAAAGACAAAGATTA+TGG 0.307904 4_1:+59544301 None:intergenic
TGAAAGCAAATCAATTCTTC+AGG 0.309362 4_1:-59545939 Msa0560280:CDS
CTGATGATTTCAGTCATTCC+TGG 0.309905 4_1:-59542583 Msa0560280:CDS
CTTAACTTGGAAAGATTTAT+GGG 0.314150 4_1:-59545993 Msa0560280:CDS
TTCGTGATCTTGGCTATTAT+TGG 0.317963 4_1:-59543253 Msa0560280:CDS
CATGTTCACAAAAGATCTTC+TGG 0.320056 4_1:+59543277 None:intergenic
CACTGCTTCTTTAACGGTTA+AGG 0.320519 4_1:+59544671 None:intergenic
TTGGCTATAATGGGTCCTTC+TGG 0.326290 4_1:-59545884 Msa0560280:CDS
AAGAATTGATTTGCTTTCAT+TGG 0.326703 4_1:+59545943 None:intergenic
TAAAAGTAATGGCTCAATTC+AGG 0.332362 4_1:-59543168 Msa0560280:intron
TTTCTAATGGGAATCATAAC+TGG 0.337952 4_1:-59542430 Msa0560280:CDS
ATAGTACACTGCTTCTTTAA+CGG 0.351217 4_1:+59544665 None:intergenic
AGAAGGGAGTTTGCTTAACT+TGG 0.354423 4_1:-59546006 Msa0560280:CDS
GGGTATTTCCAAAATGGATT+AGG 0.357240 4_1:+59542346 None:intergenic
AAATTTGAAAGAGATGAAAT+TGG 0.358441 4_1:-59542256 Msa0560280:CDS
TACTCAAAGTGGGTTGATCT+TGG 0.362481 4_1:-59542157 Msa0560280:CDS
AACAAACAAGCATTGGCTTA+TGG 0.366572 4_1:-59544908 Msa0560280:CDS
TGTTCTATATTGCCTTTCAT+AGG 0.369421 4_1:-59542321 Msa0560280:CDS
GATGCAATCAACACAAGAAT+TGG 0.372547 4_1:-59544555 Msa0560280:CDS
TGGGGTGTTAAAGGCATAAG+TGG 0.376232 4_1:-59544528 Msa0560280:CDS
AAACTTCAGTACTAGGTTGA+TGG 0.382630 4_1:+59544334 None:intergenic
GGTTCAAACACTAGACAATC+AGG 0.387950 4_1:-59544950 Msa0560280:CDS
ATATGTATTTCAGGGAGATT+AGG 0.390555 4_1:-59544971 Msa0560280:intron
GGTGTTACGGCATATGTAAT+TGG 0.394392 4_1:-59542634 Msa0560280:CDS
CACCAATGGTCATGAAAGTT+AGG 0.401646 4_1:+59543020 None:intergenic
GTGAACATGTTTCGTGATCT+TGG 0.409054 4_1:-59543263 Msa0560280:CDS
ATAACTGGTGCTGGAATTCA+AGG 0.410331 4_1:-59542415 Msa0560280:CDS
TATGAAAAGAATAGCTTCCT+TGG 0.410861 4_1:-59544397 Msa0560280:CDS
TGGTGGATTCCCTTCTTATG+TGG 0.415254 4_1:-59543002 Msa0560280:CDS
AGTCGAATATATAGACAGTT+TGG 0.415658 4_1:+59546155 None:intergenic
GGTTGATCTTGGAGTATTGT+TGG 0.424413 4_1:-59542146 Msa0560280:CDS
GTGACTGTTTCTGCTTCAAC+AGG 0.427001 4_1:-59545971 Msa0560280:CDS
GGCTATTATTGGTTACGCCT+TGG 0.429860 4_1:-59543242 Msa0560280:CDS
GTTGATCTTGGAGTATTGTT+GGG 0.434086 4_1:-59542145 Msa0560280:CDS
CACTTATGTCGGTGTCTCCT+AGG 0.440631 4_1:-59542048 Msa0560280:CDS
ATGGGAATCATAACTGGTGC+TGG 0.440680 4_1:-59542424 Msa0560280:CDS
GGGGTGTTAAAGGCATAAGT+GGG 0.451027 4_1:-59544527 Msa0560280:CDS
TCAGGCAAAACAGTTTACTT+TGG 0.455818 4_1:-59544279 Msa0560280:CDS
TTGATGGATTGAGGCAATAA+TGG 0.456241 4_1:+59544350 None:intergenic
GAAAGACTAAATGGACACTA+TGG 0.458475 4_1:-59542655 Msa0560280:CDS
TTCCTAACTTTCATGACCAT+TGG 0.458620 4_1:-59543022 Msa0560280:CDS
AATGATTTGGATAAAAGTAA+TGG 0.458739 4_1:-59543179 Msa0560280:CDS
AAATGGATTAGGAAGATCAT+TGG 0.460933 4_1:+59542357 None:intergenic
TTGTGTCAGGTAATTGAAGT+TGG 0.471985 4_1:+59544637 None:intergenic
TCATCATTAGACATTGTGTC+AGG 0.472982 4_1:+59544624 None:intergenic
TCAATTCTTCAGGGTCTGAC+TGG 0.475591 4_1:-59545929 Msa0560280:CDS
GAGATGGATTTAGCAGAGAC+TGG 0.477488 4_1:-59543560 Msa0560280:CDS
CTAACTTTCATGACCATTGG+TGG 0.478663 4_1:-59543019 Msa0560280:CDS
TTCATGTCCTCCACATAAGA+AGG 0.479736 4_1:+59542992 None:intergenic
ATAATGGGTCCTTCTGGTTG+TGG 0.481002 4_1:-59545878 Msa0560280:CDS
GATGAAATTGGTGGTGGTGG+TGG 0.481966 4_1:-59542244 Msa0560280:CDS
GATGAATGGAGGAGAAGAGA+AGG 0.482193 4_1:-59546023 Msa0560280:CDS
GACATAAGTGACATAACAAT+AGG 0.486627 4_1:+59542061 None:intergenic
TAGGCAAACAAGACAAGTCT+TGG 0.487764 4_1:-59542029 Msa0560280:CDS
ACCTCAGATGCAGCAGAAGC+AGG 0.491581 4_1:+59544255 None:intergenic
ACACTTCTTGATGCTTTAGC+AGG 0.497837 4_1:-59545848 Msa0560280:intron
AGTACTAGGTTGATGGATTG+AGG 0.499081 4_1:+59544341 None:intergenic
CAAGGGATTATGATGTTGGC+AGG 0.499670 4_1:-59542397 Msa0560280:CDS
AAGACTTGTCTTGTTTGCCT+AGG 0.501633 4_1:+59542031 None:intergenic
TGAAAGGCAATATAGAACAT+AGG 0.502086 4_1:+59542325 None:intergenic
GAAAGCAAATCAATTCTTCA+GGG 0.502763 4_1:-59545938 Msa0560280:CDS
AATGGATTAGGAAGATCATT+GGG 0.503000 4_1:+59542358 None:intergenic
CCTTGGCATATATATTGCAT+TGG 0.503427 4_1:-59543225 Msa0560280:CDS
AAATGGACACTATGGTGTTA+CGG 0.505004 4_1:-59542647 Msa0560280:CDS
GGATCACTCAATTACATTAG+TGG 0.505948 4_1:-59542220 Msa0560280:CDS
TATTAGGCACAGATGAAAGA+AGG 0.506902 4_1:+59546092 None:intergenic
TTCTTATGTGGAGGACATGA+AGG 0.508636 4_1:-59542990 Msa0560280:intron
GCCATAGCATATTACCCTCC+AGG 0.509466 4_1:-59542559 Msa0560280:CDS
AATTCAAGGGATTATGATGT+TGG 0.510525 4_1:-59542401 Msa0560280:CDS
GGGTAATATGCTATGGCTCC+AGG 0.511427 4_1:+59542565 None:intergenic
CTCTTGCGCTTTCAATCTCT+AGG 0.511830 4_1:+59546068 None:intergenic
AACACAAGAATTGGAGGGTG+GGG 0.512629 4_1:-59544546 Msa0560280:CDS
ACCTGCTTCTGCTGCATCTG+AGG 0.514345 4_1:-59544256 Msa0560280:intron
GAAAGGCAATATAGAACATA+GGG 0.518508 4_1:+59542326 None:intergenic
ATGAATGGAGGAGAAGAGAA+GGG 0.524895 4_1:-59546022 Msa0560280:CDS
AGAGATGAAATTGGTGGTGG+TGG 0.529076 4_1:-59542247 Msa0560280:CDS
TGGATTCCCTTCTTATGTGG+AGG 0.531042 4_1:-59542999 Msa0560280:CDS
CAATGGCAACAAACAAGCAT+TGG 0.531389 4_1:-59544915 Msa0560280:CDS
GATTGAAAGCGCAAGAGAAG+AGG 0.532796 4_1:-59546062 Msa0560280:CDS
TTGATATGAGTTACTCAAAG+TGG 0.535183 4_1:-59542168 Msa0560280:CDS
TCTTATAAGAATGAGTTTGA+AGG 0.538328 4_1:-59542283 Msa0560280:CDS
TATACAACATCTATATGTAA+AGG 0.538931 4_1:+59541989 None:intergenic
ACCTGGAGGGTAATATGCTA+TGG 0.542119 4_1:+59542558 None:intergenic
CTGACTGGTTATGCAAAGCC+TGG 0.543693 4_1:-59545914 Msa0560280:CDS
TATTGTTATGTCACTTATGT+CGG 0.544402 4_1:-59542059 Msa0560280:CDS
AGCTGCACTATCAAGTCCAC+TGG 0.547420 4_1:+59544431 None:intergenic
ATATAGACAGTTTGGCATGA+GGG 0.558443 4_1:+59546163 None:intergenic
GCAATCAACACAAGAATTGG+AGG 0.560697 4_1:-59544552 Msa0560280:CDS
ATTATAGCCAAAAGCTGACC+AGG 0.561158 4_1:+59545896 None:intergenic
TGTGTCAGGTAATTGAAGTT+GGG 0.561591 4_1:+59544638 None:intergenic
ATCCAAATCATTAAAGACAG+TGG 0.564200 4_1:+59543190 None:intergenic
CAACACAAGAATTGGAGGGT+GGG 0.564826 4_1:-59544547 Msa0560280:CDS
ATATGTAAAGGAGTGGCACT+AGG 0.573329 4_1:+59542001 None:intergenic
TTGAAAAGCATACCTATGAA+AGG 0.573338 4_1:+59542309 None:intergenic
TGATATGAGTTACTCAAAGT+GGG 0.574550 4_1:-59542167 Msa0560280:CDS
GGGTGTTAAAGGCATAAGTG+GGG 0.578959 4_1:-59544526 Msa0560280:CDS
TTTGAAAGAGATGAAATTGG+TGG 0.584768 4_1:-59542253 Msa0560280:CDS
TGATTCCCATTAGAAAATCA+GGG 0.592259 4_1:+59542437 None:intergenic
GAAAGCGCAAGAGAAGAGGT+AGG 0.592493 4_1:-59546058 Msa0560280:CDS
GAAAGAGATGAAATTGGTGG+TGG 0.595546 4_1:-59542250 Msa0560280:CDS
TAAGAACTAAACACTGATTG+AGG 0.597228 4_1:+59543300 None:intergenic
TATATAGACAGTTTGGCATG+AGG 0.598734 4_1:+59546162 None:intergenic
TCAATGTTAGGATATTGAGA+TGG 0.603713 4_1:-59543576 Msa0560280:intron
CCAATGCAATATATATGCCA+AGG 0.604975 4_1:+59543225 None:intergenic
TTTGCTTAAAACTATAAACA+AGG 0.608099 4_1:-59544093 Msa0560280:CDS
TTTCTTGATGAACCAACCAG+TGG 0.612742 4_1:-59544447 Msa0560280:CDS
ATTAGGCACAGATGAAAGAA+GGG 0.612796 4_1:+59546093 None:intergenic
GTTCAAACACTAGACAATCA+GGG 0.616983 4_1:-59544949 Msa0560280:CDS
AACATCTATATGTAAAGGAG+TGG 0.624574 4_1:+59541994 None:intergenic
GCACTATCAAGTCCACTGGT+TGG 0.624936 4_1:+59544435 None:intergenic
ATGAAGAATATGAGCTCACA+AGG 0.626092 4_1:+59543507 None:intergenic
GGGATTATGATGTTGGCAGG+TGG 0.630683 4_1:-59542394 Msa0560280:CDS
TCATGTCCTCCACATAAGAA+GGG 0.633774 4_1:+59542993 None:intergenic
TCAACACAAGAATTGGAGGG+TGG 0.634185 4_1:-59544548 Msa0560280:CDS
AGCATTGGCTTATGGAACCT+CGG 0.634970 4_1:-59544900 Msa0560280:intron
TTCAAACACTAGACAATCAG+GGG 0.642113 4_1:-59544948 Msa0560280:CDS
ATTCTTATATGTTCACAACA+TGG 0.654855 4_1:-59546119 Msa0560280:exon
CAATCAACACAAGAATTGGA+GGG 0.667741 4_1:-59544551 Msa0560280:CDS
ATAAGAAGGGAATCCACCAA+TGG 0.674842 4_1:+59543006 None:intergenic
TAACTGGTGCTGGAATTCAA+GGG 0.675155 4_1:-59542414 Msa0560280:CDS
GGTGTTAAAGGCATAAGTGG+GGG 0.724955 4_1:-59544525 Msa0560280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATATAATATTTTAAT+TGG + chr4_1:59543186-59543205 None:intergenic 0.0%
!! GATATTTATATACAAATTAT+TGG - chr4_1:59543043-59543062 Msa0560280:CDS 10.0%
!!! ATTATTTTTATATGTATTTC+AGG - chr4_1:59543199-59543218 Msa0560280:CDS 10.0%
!!! TTATTTTTATATGTATTTCA+GGG - chr4_1:59543200-59543219 Msa0560280:CDS 10.0%
!! TAAAATATTAATTGAAAGAA+TGG + chr4_1:59543442-59543461 None:intergenic 10.0%
!! TATATAATTGAAAATTAACA+TGG + chr4_1:59543966-59543985 None:intergenic 10.0%
!!! TGGATATTTTTTTTATTGAT+TGG - chr4_1:59542649-59542668 Msa0560280:CDS 15.0%
!!! TTTGACTTTATAATCTTAAA+TGG - chr4_1:59542745-59542764 Msa0560280:intron 15.0%
!!! TTACAAATTGTTTTTATTGA+AGG + chr4_1:59543324-59543343 None:intergenic 15.0%
!! ATATCAATTGGAATAATTTA+TGG + chr4_1:59543366-59543385 None:intergenic 15.0%
!! GATTAAATATACATATCAAT+TGG + chr4_1:59543378-59543397 None:intergenic 15.0%
!! AAACAGAATTAATTACTAAA+TGG + chr4_1:59543999-59544018 None:intergenic 15.0%
!!! ATACTTCATTTTTAATTTCT+TGG + chr4_1:59544708-59544727 None:intergenic 15.0%
!!! CACTAAATTATTGTTTTATT+CGG - chr4_1:59545454-59545473 Msa0560280:intron 15.0%
!! ATATTGTTGAAATAGTATGT+TGG + chr4_1:59542472-59542491 None:intergenic 20.0%
!! GCAAATATATTAATATGCTT+AGG + chr4_1:59542538-59542557 None:intergenic 20.0%
!!! ATGGTTTCTATTTCATTTTT+TGG - chr4_1:59542629-59542648 Msa0560280:CDS 20.0%
!!! TGTGTTTTTAATTCTTAAAC+AGG - chr4_1:59542943-59542962 Msa0560280:intron 20.0%
!! TATTATTTAATGTGTGTACA+TGG + chr4_1:59543017-59543036 None:intergenic 20.0%
!! TTTATATACAAATTATTGGG+TGG - chr4_1:59543047-59543066 Msa0560280:CDS 20.0%
!! TTATATACAAATTATTGGGT+GGG - chr4_1:59543048-59543067 Msa0560280:CDS 20.0%
!!! TTTAGATTTTAAATATACCG+AGG + chr4_1:59543299-59543318 None:intergenic 20.0%
!!! TAATATTTTAATGTGATCAC+AGG - chr4_1:59543452-59543471 Msa0560280:CDS 20.0%
!!! TGATTTTACAATAAGAGAAA+TGG - chr4_1:59543593-59543612 Msa0560280:intron 20.0%
!!! GATTTTACAATAAGAGAAAT+GGG - chr4_1:59543594-59543613 Msa0560280:intron 20.0%
!!! TATAGTTTTAAGCAAATGAT+CGG + chr4_1:59544082-59544101 None:intergenic 20.0%
!! TTTGCTTAAAACTATAAACA+AGG - chr4_1:59544086-59544105 Msa0560280:CDS 20.0%
!!! ATATTGAGTTCAATTTTGTA+TGG + chr4_1:59544231-59544250 None:intergenic 20.0%
!! GTTGAATCTTGAATTATTTA+AGG - chr4_1:59544410-59544429 Msa0560280:CDS 20.0%
!! TTGAAATATGTTTCAATGTT+AGG - chr4_1:59544591-59544610 Msa0560280:CDS 20.0%
!!! TTTAATTTCTTGGTTTCTTT+CGG + chr4_1:59544698-59544717 None:intergenic 20.0%
!!! TAAATTTAGCTCAAATTTAG+AGG + chr4_1:59544764-59544783 None:intergenic 20.0%
!!! AATGATTTGGATAAAAGTAA+TGG - chr4_1:59545000-59545019 Msa0560280:intron 20.0%
!! GCAAATATATATTGAATGAA+TGG - chr4_1:59545251-59545270 Msa0560280:intron 20.0%
!!! CATATGCTATTAATTTGTAT+AGG - chr4_1:59545490-59545509 Msa0560280:intron 20.0%
!! AAATTTGAAAGAGATGAAAT+TGG - chr4_1:59545923-59545942 Msa0560280:CDS 20.0%
!! TATACAACATCTATATGTAA+AGG + chr4_1:59546193-59546212 None:intergenic 20.0%
!!! GTACATTTAATTTTGTTTTG+TGG - chr4_1:59546217-59546236 Msa0560280:five_prime_UTR 20.0%
! ATTCTTATATGTTCACAACA+TGG - chr4_1:59542060-59542079 Msa0560280:CDS 25.0%
!! CTTAACTTGGAAAGATTTAT+GGG - chr4_1:59542186-59542205 Msa0560280:CDS 25.0%
!!! AAGAATTGATTTGCTTTCAT+TGG + chr4_1:59542239-59542258 None:intergenic 25.0%
!! ATTTTGTGTATTCTTTCTCA+AGG - chr4_1:59542504-59542523 Msa0560280:CDS 25.0%
!!! ACCTTATGTTTTAAAGTTCA+TGG - chr4_1:59542602-59542621 Msa0560280:CDS 25.0%
! GAAAAACATGTGTTAATCAA+AGG + chr4_1:59542688-59542707 None:intergenic 25.0%
!! TTGATTAACACATGTTTTTC+TGG - chr4_1:59542688-59542707 Msa0560280:intron 25.0%
! GCTACATATTACTAGTAATT+TGG - chr4_1:59542825-59542844 Msa0560280:intron 25.0%
! CATATTACTAGTAATTTGGT+TGG - chr4_1:59542829-59542848 Msa0560280:intron 25.0%
!!! GTTTTTAATTCTTAAACAGG+AGG - chr4_1:59542946-59542965 Msa0560280:intron 25.0%
! AAGACAAAAGACAAAGATTA+TGG + chr4_1:59543881-59543900 None:intergenic 25.0%
! TTCAAAGCAAAAAACTACAT+TGG + chr4_1:59544027-59544046 None:intergenic 25.0%
!!! ATGTAGTTTTTTGCTTTGAA+CGG - chr4_1:59544027-59544046 Msa0560280:intron 25.0%
!!! TATAAACAAGGATTTTGATC+AGG - chr4_1:59544098-59544117 Msa0560280:CDS 25.0%
! ACAAAGTTGACATAAAAACA+TGG + chr4_1:59544353-59544372 None:intergenic 25.0%
! GTCTATAGTATTGTCTTTAA+AGG - chr4_1:59544735-59544754 Msa0560280:intron 25.0%
! ATATTGACATGAAACTTTGA+TGG - chr4_1:59544809-59544828 Msa0560280:intron 25.0%
! TATTGACATGAAACTTTGAT+GGG - chr4_1:59544810-59544829 Msa0560280:intron 25.0%
! AGGTCAGTTAATGTAATATA+AGG + chr4_1:59545049-59545068 None:intergenic 25.0%
!! AGTTCATAACTTTTGTGAAT+TGG - chr4_1:59545312-59545331 Msa0560280:intron 25.0%
! AATTGTTCAAAATTATCCCT+CGG - chr4_1:59545360-59545379 Msa0560280:intron 25.0%
!!! TTGTTTTATTCGGTCTTTTA+TGG - chr4_1:59545464-59545483 Msa0560280:intron 25.0%
!! ATTTTCTTGTCTAATGTTAG+TGG - chr4_1:59545688-59545707 Msa0560280:intron 25.0%
! TCTTATAAGAATGAGTTTGA+AGG - chr4_1:59545896-59545915 Msa0560280:CDS 25.0%
!! TATTGTTATGTCACTTATGT+CGG - chr4_1:59546120-59546139 Msa0560280:exon 25.0%
AGTCGAATATATAGACAGTT+TGG + chr4_1:59542027-59542046 None:intergenic 30.0%
!! CTTTCAATCTCTAGGATATT+AGG + chr4_1:59542106-59542125 None:intergenic 30.0%
! GCTTAACTTGGAAAGATTTA+TGG - chr4_1:59542185-59542204 Msa0560280:CDS 30.0%
TGAAAGCAAATCAATTCTTC+AGG - chr4_1:59542240-59542259 Msa0560280:CDS 30.0%
GAAAGCAAATCAATTCTTCA+GGG - chr4_1:59542241-59542260 Msa0560280:CDS 30.0%
! GATTTTCCACAAAGCATAAA+TGG + chr4_1:59542373-59542392 None:intergenic 30.0%
AGGAAGTTATATATAGCAGT+TGG + chr4_1:59542435-59542454 None:intergenic 30.0%
!! AAATAGTATGTTGGTGATTG+GGG + chr4_1:59542463-59542482 None:intergenic 30.0%
!! GAAATAGTATGTTGGTGATT+GGG + chr4_1:59542464-59542483 None:intergenic 30.0%
!! TGAAATAGTATGTTGGTGAT+TGG + chr4_1:59542465-59542484 None:intergenic 30.0%
!! GCCATGAACTTTAAAACATA+AGG + chr4_1:59542606-59542625 None:intergenic 30.0%
TGGCAAAATTCAAATCTCTT+CGG - chr4_1:59542765-59542784 Msa0560280:intron 30.0%
TGGTTGGAATTAAACTAAGA+AGG - chr4_1:59542845-59542864 Msa0560280:intron 30.0%
GGTTGGAATTAAACTAAGAA+GGG - chr4_1:59542846-59542865 Msa0560280:intron 30.0%
AAGTCAAAATTACTTCCATG+TGG - chr4_1:59542895-59542914 Msa0560280:intron 30.0%
AAAAACCAGTTAAAACCACA+TGG + chr4_1:59542913-59542932 None:intergenic 30.0%
!!! TGTGGTTTTAACTGGTTTTT+AGG - chr4_1:59542913-59542932 Msa0560280:intron 30.0%
ATATGTATTTCAGGGAGATT+AGG - chr4_1:59543208-59543227 Msa0560280:CDS 30.0%
ATAGTACACTGCTTCTTTAA+CGG + chr4_1:59543517-59543536 None:intergenic 30.0%
TCATCAAGAAAAAGAAGTCT+AGG + chr4_1:59543723-59543742 None:intergenic 30.0%
TATGAAAAGAATAGCTTCCT+TGG - chr4_1:59543782-59543801 Msa0560280:intron 30.0%
ACAAAAAGGATGGAATTCAA+AGG - chr4_1:59543805-59543824 Msa0560280:intron 30.0%
AGTTGAAAAACTTCAGTACT+AGG + chr4_1:59543855-59543874 None:intergenic 30.0%
! AATCTTTGTCTTTTGTCTTC+AGG - chr4_1:59543882-59543901 Msa0560280:intron 30.0%
! TCCTTCTTTGTTTAGTATCA+TGG - chr4_1:59544165-59544184 Msa0560280:intron 30.0%
ACCATGATACTAAACAAAGA+AGG + chr4_1:59544169-59544188 None:intergenic 30.0%
TGCAAAATAGATAGACTCTA+GGG + chr4_1:59544258-59544277 None:intergenic 30.0%
GATTATCAGAATTCACAATG+TGG + chr4_1:59544287-59544306 None:intergenic 30.0%
ATGGTTGGATACAAAAATGT+AGG + chr4_1:59544334-59544353 None:intergenic 30.0%
AGTTGACATAAAAACATGGT+TGG + chr4_1:59544349-59544368 None:intergenic 30.0%
TCAATGTTAGGATATTGAGA+TGG - chr4_1:59544603-59544622 Msa0560280:CDS 30.0%
GATATCAATTGCTTGTTCTA+TGG + chr4_1:59544653-59544672 None:intergenic 30.0%
ACATACAAGAAAAAACATGC+TGG - chr4_1:59544853-59544872 Msa0560280:intron 30.0%
! TAAGAACTAAACACTGATTG+AGG + chr4_1:59544882-59544901 None:intergenic 30.0%
ATCCAAATCATTAAAGACAG+TGG + chr4_1:59544992-59545011 None:intergenic 30.0%
TAAAAGTAATGGCTCAATTC+AGG - chr4_1:59545011-59545030 Msa0560280:intron 30.0%
GAAGATAGTAGCTAAACTTA+AGG + chr4_1:59545069-59545088 None:intergenic 30.0%
!!! CTAATTTTGCATGTCACTTT+TGG - chr4_1:59545088-59545107 Msa0560280:intron 30.0%
TTTGAACGTGAAAGACTAAA+TGG - chr4_1:59545515-59545534 Msa0560280:intron 30.0%
ACTGAAATCATCAGCAAATA+TGG + chr4_1:59545590-59545609 None:intergenic 30.0%
! ATTGTCCCTGATTTTCTAAT+GGG - chr4_1:59545737-59545756 Msa0560280:intron 30.0%
TGATTCCCATTAGAAAATCA+GGG + chr4_1:59545745-59545764 None:intergenic 30.0%
ATGATTCCCATTAGAAAATC+AGG + chr4_1:59545746-59545765 None:intergenic 30.0%
TTTCTAATGGGAATCATAAC+TGG - chr4_1:59545749-59545768 Msa0560280:intron 30.0%
AATTCAAGGGATTATGATGT+TGG - chr4_1:59545778-59545797 Msa0560280:intron 30.0%
!! AATGGATTAGGAAGATCATT+GGG + chr4_1:59545824-59545843 None:intergenic 30.0%
!! AAATGGATTAGGAAGATCAT+TGG + chr4_1:59545825-59545844 None:intergenic 30.0%
! ATGATCTTCCTAATCCATTT+TGG - chr4_1:59545825-59545844 Msa0560280:intron 30.0%
! AACATAGGGTATTTCCAAAA+TGG + chr4_1:59545842-59545861 None:intergenic 30.0%
GAAAGGCAATATAGAACATA+GGG + chr4_1:59545856-59545875 None:intergenic 30.0%
TGAAAGGCAATATAGAACAT+AGG + chr4_1:59545857-59545876 None:intergenic 30.0%
TGTTCTATATTGCCTTTCAT+AGG - chr4_1:59545858-59545877 Msa0560280:CDS 30.0%
! TTGAAAAGCATACCTATGAA+AGG + chr4_1:59545873-59545892 None:intergenic 30.0%
! TTTCATAGGTATGCTTTTCA+AGG - chr4_1:59545872-59545891 Msa0560280:CDS 30.0%
TTTGAAAGAGATGAAATTGG+TGG - chr4_1:59545926-59545945 Msa0560280:CDS 30.0%
TTGATATGAGTTACTCAAAG+TGG - chr4_1:59546011-59546030 Msa0560280:CDS 30.0%
TGATATGAGTTACTCAAAGT+GGG - chr4_1:59546012-59546031 Msa0560280:CDS 30.0%
GACATAAGTGACATAACAAT+AGG + chr4_1:59546121-59546140 None:intergenic 30.0%
AACATCTATATGTAAAGGAG+TGG + chr4_1:59546188-59546207 None:intergenic 30.0%
! TGAGGGTTTTTACATGCATT+TGG + chr4_1:59542002-59542021 None:intergenic 35.0%
ATATAGACAGTTTGGCATGA+GGG + chr4_1:59542019-59542038 None:intergenic 35.0%
TATATAGACAGTTTGGCATG+AGG + chr4_1:59542020-59542039 None:intergenic 35.0%
ATTAGGCACAGATGAAAGAA+GGG + chr4_1:59542089-59542108 None:intergenic 35.0%
TATTAGGCACAGATGAAAGA+AGG + chr4_1:59542090-59542109 None:intergenic 35.0%
! GGAGCATCAAAAAAGATGAA+TGG - chr4_1:59542142-59542161 Msa0560280:CDS 35.0%
GCATCAAAAAAGATGAATGG+AGG - chr4_1:59542145-59542164 Msa0560280:CDS 35.0%
TCTTGACCATTTATGCTTTG+TGG - chr4_1:59542364-59542383 Msa0560280:CDS 35.0%
!! AATAGTATGTTGGTGATTGG+GGG + chr4_1:59542462-59542481 None:intergenic 35.0%
!!! TTTTAAAGTTCATGGCTCGA+TGG - chr4_1:59542610-59542629 Msa0560280:CDS 35.0%
!!! TACTTCCATGTGGTTTTAAC+TGG - chr4_1:59542905-59542924 Msa0560280:intron 35.0%
ATGAAACAAAGCACAATCTG+TGG - chr4_1:59543081-59543100 Msa0560280:intron 35.0%
GTTCAAACACTAGACAATCA+GGG - chr4_1:59543230-59543249 Msa0560280:CDS 35.0%
TTCAAACACTAGACAATCAG+GGG - chr4_1:59543231-59543250 Msa0560280:CDS 35.0%
!!! TCAGGGGATATTTTGATCAA+TGG - chr4_1:59543247-59543266 Msa0560280:CDS 35.0%
!! AACAAACAAGCATTGGCTTA+TGG - chr4_1:59543271-59543290 Msa0560280:CDS 35.0%
TGTGTCAGGTAATTGAAGTT+GGG + chr4_1:59543544-59543563 None:intergenic 35.0%
TTGTGTCAGGTAATTGAAGT+TGG + chr4_1:59543545-59543564 None:intergenic 35.0%
TCATCATTAGACATTGTGTC+AGG + chr4_1:59543558-59543577 None:intergenic 35.0%
GATGCAATCAACACAAGAAT+TGG - chr4_1:59543624-59543643 Msa0560280:intron 35.0%
CAATCAACACAAGAATTGGA+GGG - chr4_1:59543628-59543647 Msa0560280:intron 35.0%
AATAGCTTCCTTGGACAAAA+AGG - chr4_1:59543791-59543810 Msa0560280:intron 35.0%
! AATTCCATCCTTTTTGTCCA+AGG + chr4_1:59543802-59543821 None:intergenic 35.0%
!! TTGATGGATTGAGGCAATAA+TGG + chr4_1:59543832-59543851 None:intergenic 35.0%
! AAACTTCAGTACTAGGTTGA+TGG + chr4_1:59543848-59543867 None:intergenic 35.0%
TCAGGCAAAACAGTTTACTT+TGG - chr4_1:59543900-59543919 Msa0560280:intron 35.0%
!! ATGATCGGATGGATTTTGTA+GGG + chr4_1:59544067-59544086 None:intergenic 35.0%
!! AATGATCGGATGGATTTTGT+AGG + chr4_1:59544068-59544087 None:intergenic 35.0%
!! GTTTTAAGCAAATGATCGGA+TGG + chr4_1:59544078-59544097 None:intergenic 35.0%
! ATATTTCCGACTTGTATCGA+AGG + chr4_1:59544201-59544220 None:intergenic 35.0%
GTGCAAAATAGATAGACTCT+AGG + chr4_1:59544259-59544278 None:intergenic 35.0%
ATGAAGAATATGAGCTCACA+AGG + chr4_1:59544675-59544694 None:intergenic 35.0%
!! GAAACTTTGATGGGTGTTTT+AGG - chr4_1:59544819-59544838 Msa0560280:intron 35.0%
CATGTTCACAAAAGATCTTC+TGG + chr4_1:59544905-59544924 None:intergenic 35.0%
TTCGTGATCTTGGCTATTAT+TGG - chr4_1:59544926-59544945 Msa0560280:CDS 35.0%
CCAATGCAATATATATGCCA+AGG + chr4_1:59544957-59544976 None:intergenic 35.0%
CCTTGGCATATATATTGCAT+TGG - chr4_1:59544954-59544973 Msa0560280:CDS 35.0%
AGCCACTGTCTTTAATGATT+TGG - chr4_1:59544987-59545006 Msa0560280:intron 35.0%
!!! CACTTTTGGTTTTCCTTTTC+AGG - chr4_1:59545102-59545121 Msa0560280:intron 35.0%
TTCCTAACTTTCATGACCAT+TGG - chr4_1:59545157-59545176 Msa0560280:intron 35.0%
ATTCTCGAAGTTGTTAGCAT+CGG - chr4_1:59545282-59545301 Msa0560280:intron 35.0%
GAAAGACTAAATGGACACTA+TGG - chr4_1:59545524-59545543 Msa0560280:intron 35.0%
! AAATGGACACTATGGTGTTA+CGG - chr4_1:59545532-59545551 Msa0560280:intron 35.0%
!! TCAAATCCTTTTTGAAGACC+TGG + chr4_1:59545641-59545660 None:intergenic 35.0%
! CATTGTCCCTGATTTTCTAA+TGG - chr4_1:59545736-59545755 Msa0560280:intron 35.0%
! GGGTATTTCCAAAATGGATT+AGG + chr4_1:59545836-59545855 None:intergenic 35.0%
GGATCACTCAATTACATTAG+TGG - chr4_1:59545959-59545978 Msa0560280:CDS 35.0%
!! GTTGATCTTGGAGTATTGTT+GGG - chr4_1:59546034-59546053 Msa0560280:CDS 35.0%
ATGAATGGAGGAGAAGAGAA+GGG - chr4_1:59542157-59542176 Msa0560280:CDS 40.0%
! AGAAGGGAGTTTGCTTAACT+TGG - chr4_1:59542173-59542192 Msa0560280:CDS 40.0%
ATTATAGCCAAAAGCTGACC+AGG + chr4_1:59542286-59542305 None:intergenic 40.0%
!! TGGTCAGCTTTTGGCTATAA+TGG - chr4_1:59542285-59542304 Msa0560280:CDS 40.0%
!! GGTCAGCTTTTGGCTATAAT+GGG - chr4_1:59542286-59542305 Msa0560280:CDS 40.0%
! GTAGATTTTCCACAACCAGA+AGG + chr4_1:59542313-59542332 None:intergenic 40.0%
ACACTTCTTGATGCTTTAGC+AGG - chr4_1:59542331-59542350 Msa0560280:CDS 40.0%
GGTTCAAAGACTACATGCAT+TGG + chr4_1:59543165-59543184 None:intergenic 40.0%
GGTTCAAACACTAGACAATC+AGG - chr4_1:59543229-59543248 Msa0560280:CDS 40.0%
CAATGGCAACAAACAAGCAT+TGG - chr4_1:59543264-59543283 Msa0560280:CDS 40.0%
CACTGCTTCTTTAACGGTTA+AGG + chr4_1:59543511-59543530 None:intergenic 40.0%
GCAATCAACACAAGAATTGG+AGG - chr4_1:59543627-59543646 Msa0560280:intron 40.0%
TTTCTTGATGAACCAACCAG+TGG - chr4_1:59543732-59543751 Msa0560280:intron 40.0%
!! AGTACTAGGTTGATGGATTG+AGG + chr4_1:59543841-59543860 None:intergenic 40.0%
!! TGATCGGATGGATTTTGTAG+GGG + chr4_1:59544066-59544085 None:intergenic 40.0%
CAGTATCCTTCGATACAAGT+CGG - chr4_1:59544192-59544211 Msa0560280:intron 40.0%
GTGAACATGTTTCGTGATCT+TGG - chr4_1:59544916-59544935 Msa0560280:CDS 40.0%
!! GGTTTTCCTTTTCAGGATAG+AGG - chr4_1:59545109-59545128 Msa0560280:intron 40.0%
AGTGAACCTCTATCCTGAAA+AGG + chr4_1:59545118-59545137 None:intergenic 40.0%
CACCAATGGTCATGAAAGTT+AGG + chr4_1:59545162-59545181 None:intergenic 40.0%
CTAACTTTCATGACCATTGG+TGG - chr4_1:59545160-59545179 Msa0560280:intron 40.0%
ATAAGAAGGGAATCCACCAA+TGG + chr4_1:59545176-59545195 None:intergenic 40.0%
TCATGTCCTCCACATAAGAA+GGG + chr4_1:59545189-59545208 None:intergenic 40.0%
TTCATGTCCTCCACATAAGA+AGG + chr4_1:59545190-59545209 None:intergenic 40.0%
TTCTTATGTGGAGGACATGA+AGG - chr4_1:59545189-59545208 Msa0560280:intron 40.0%
! GGTGTTACGGCATATGTAAT+TGG - chr4_1:59545545-59545564 Msa0560280:intron 40.0%
CTGATGATTTCAGTCATTCC+TGG - chr4_1:59545596-59545615 Msa0560280:intron 40.0%
!! ATCCTTTTTGAAGACCTGGA+GGG + chr4_1:59545637-59545656 None:intergenic 40.0%
!! AATCCTTTTTGAAGACCTGG+AGG + chr4_1:59545638-59545657 None:intergenic 40.0%
! ATAACTGGTGCTGGAATTCA+AGG - chr4_1:59545764-59545783 Msa0560280:intron 40.0%
! TAACTGGTGCTGGAATTCAA+GGG - chr4_1:59545765-59545784 Msa0560280:intron 40.0%
GAAAGAGATGAAATTGGTGG+TGG - chr4_1:59545929-59545948 Msa0560280:CDS 40.0%
!! TACTCAAAGTGGGTTGATCT+TGG - chr4_1:59546022-59546041 Msa0560280:CDS 40.0%
!! GGTTGATCTTGGAGTATTGT+TGG - chr4_1:59546033-59546052 Msa0560280:CDS 40.0%
!! AAGACTTGTCTTGTTTGCCT+AGG + chr4_1:59546151-59546170 None:intergenic 40.0%
TAGGCAAACAAGACAAGTCT+TGG - chr4_1:59546150-59546169 Msa0560280:five_prime_UTR 40.0%
ATATGTAAAGGAGTGGCACT+AGG + chr4_1:59546181-59546200 None:intergenic 40.0%
CTCTTGCGCTTTCAATCTCT+AGG + chr4_1:59542114-59542133 None:intergenic 45.0%
! GATTGAAAGCGCAAGAGAAG+AGG - chr4_1:59542117-59542136 Msa0560280:CDS 45.0%
GATGAATGGAGGAGAAGAGA+AGG - chr4_1:59542156-59542175 Msa0560280:CDS 45.0%
!! GTGACTGTTTCTGCTTCAAC+AGG - chr4_1:59542208-59542227 Msa0560280:CDS 45.0%
TCAATTCTTCAGGGTCTGAC+TGG - chr4_1:59542250-59542269 Msa0560280:CDS 45.0%
!! TTGGCTATAATGGGTCCTTC+TGG - chr4_1:59542295-59542314 Msa0560280:CDS 45.0%
!! ATAATGGGTCCTTCTGGTTG+TGG - chr4_1:59542301-59542320 Msa0560280:CDS 45.0%
!! TGTTGGTGATTGGGGGATTT+AGG + chr4_1:59542455-59542474 None:intergenic 45.0%
!! AGCATTGGCTTATGGAACCT+CGG - chr4_1:59543279-59543298 Msa0560280:CDS 45.0%
TCAACACAAGAATTGGAGGG+TGG - chr4_1:59543631-59543650 Msa0560280:intron 45.0%
CAACACAAGAATTGGAGGGT+GGG - chr4_1:59543632-59543651 Msa0560280:intron 45.0%
AACACAAGAATTGGAGGGTG+GGG - chr4_1:59543633-59543652 Msa0560280:intron 45.0%
! TGGGGTGTTAAAGGCATAAG+TGG - chr4_1:59543651-59543670 Msa0560280:intron 45.0%
! GGGGTGTTAAAGGCATAAGT+GGG - chr4_1:59543652-59543671 Msa0560280:intron 45.0%
! GGGTGTTAAAGGCATAAGTG+GGG - chr4_1:59543653-59543672 Msa0560280:intron 45.0%
! GGTGTTAAAGGCATAAGTGG+GGG - chr4_1:59543654-59543673 Msa0560280:intron 45.0%
GCATAAGTGGGGGTCAAAAA+AGG - chr4_1:59543664-59543683 Msa0560280:intron 45.0%
GCTTCCTTGGACAAAAAGGA+TGG - chr4_1:59543795-59543814 Msa0560280:intron 45.0%
! GAGATGGATTTAGCAGAGAC+TGG - chr4_1:59544619-59544638 Msa0560280:CDS 45.0%
! GGCTATTATTGGTTACGCCT+TGG - chr4_1:59544937-59544956 Msa0560280:CDS 45.0%
!! TGGTGGATTCCCTTCTTATG+TGG - chr4_1:59545177-59545196 Msa0560280:intron 45.0%
TGGATTCCCTTCTTATGTGG+AGG - chr4_1:59545180-59545199 Msa0560280:intron 45.0%
TAATGACGAACGTTCACCGA+GGG + chr4_1:59545379-59545398 None:intergenic 45.0%
ACCTGGAGGGTAATATGCTA+TGG + chr4_1:59545624-59545643 None:intergenic 45.0%
TACCCTCCAGGTCTTCAAAA+AGG - chr4_1:59545632-59545651 Msa0560280:intron 45.0%
ATGGGAATCATAACTGGTGC+TGG - chr4_1:59545755-59545774 Msa0560280:intron 45.0%
CAAGGGATTATGATGTTGGC+AGG - chr4_1:59545782-59545801 Msa0560280:intron 45.0%
!! AGAGATGAAATTGGTGGTGG+TGG - chr4_1:59545932-59545951 Msa0560280:CDS 45.0%
!! ATATTTATATACAAATTATT+GGG - chr4_1:59543044-59543063 Msa0560280:CDS 5.0%
! GAAAGCGCAAGAGAAGAGGT+AGG - chr4_1:59542121-59542140 Msa0560280:CDS 50.0%
! CTGACTGGTTATGCAAAGCC+TGG - chr4_1:59542265-59542284 Msa0560280:CDS 50.0%
! TGCAAAGCCTGGTCAGCTTT+TGG - chr4_1:59542276-59542295 Msa0560280:CDS 50.0%
CAAAGCACAATCTGTGGCAG+CGG - chr4_1:59543087-59543106 Msa0560280:intron 50.0%
AAAGCACAATCTGTGGCAGC+GGG - chr4_1:59543088-59543107 Msa0560280:intron 50.0%
! ATTGGAGGGTGGGGTGTTAA+AGG - chr4_1:59543642-59543661 Msa0560280:intron 50.0%
GCACTATCAAGTCCACTGGT+TGG + chr4_1:59543747-59543766 None:intergenic 50.0%
AGCTGCACTATCAAGTCCAC+TGG + chr4_1:59543751-59543770 None:intergenic 50.0%
! CTTCTGCTGCATCTGAGGTT+AGG - chr4_1:59543928-59543947 Msa0560280:intron 50.0%
! GGATTTTGTAGGGGAGGACA+AGG + chr4_1:59544057-59544076 None:intergenic 50.0%
!! TCGGATGGATTTTGTAGGGG+AGG + chr4_1:59544063-59544082 None:intergenic 50.0%
CTAATGACGAACGTTCACCG+AGG + chr4_1:59545380-59545399 None:intergenic 50.0%
GGGTAATATGCTATGGCTCC+AGG + chr4_1:59545617-59545636 None:intergenic 50.0%
GCCATAGCATATTACCCTCC+AGG - chr4_1:59545620-59545639 Msa0560280:intron 50.0%
GGGATTATGATGTTGGCAGG+TGG - chr4_1:59545785-59545804 Msa0560280:intron 50.0%
!! GATGAAATTGGTGGTGGTGG+TGG - chr4_1:59545935-59545954 Msa0560280:CDS 50.0%
! CACTTATGTCGGTGTCTCCT+AGG - chr4_1:59546131-59546150 Msa0560280:five_prime_UTR 50.0%
AAGCACAATCTGTGGCAGCG+GGG - chr4_1:59543089-59543108 Msa0560280:intron 55.0%
ACCTGCTTCTGCTGCATCTG+AGG - chr4_1:59543923-59543942 Msa0560280:intron 55.0%
ACCTCAGATGCAGCAGAAGC+AGG + chr4_1:59543927-59543946 None:intergenic 55.0%
!! GAAATTGGTGGTGGTGGTGG+TGG - chr4_1:59545938-59545957 Msa0560280:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59541950 59546251 59541950 ID=Msa0560280;Name=Msa0560280
chr4_1 mRNA 59541950 59546251 59541950 ID=Msa0560280-mRNA-1;Parent=Msa0560280;Name=Msa0560280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=129|1|1|1|1|1|8|38|678
chr4_1 exon 59541950 59542689 59541950 ID=Msa0560280-mRNA-1:exon:18420;Parent=Msa0560280-mRNA-1
chr4_1 exon 59542991 59543077 59542991 ID=Msa0560280-mRNA-1:exon:18419;Parent=Msa0560280-mRNA-1
chr4_1 exon 59543169 59543360 59543169 ID=Msa0560280-mRNA-1:exon:18418;Parent=Msa0560280-mRNA-1
chr4_1 exon 59543445 59543588 59543445 ID=Msa0560280-mRNA-1:exon:18417;Parent=Msa0560280-mRNA-1
chr4_1 exon 59544082 59544168 59544082 ID=Msa0560280-mRNA-1:exon:18416;Parent=Msa0560280-mRNA-1
chr4_1 exon 59544257 59544727 59544257 ID=Msa0560280-mRNA-1:exon:18415;Parent=Msa0560280-mRNA-1
chr4_1 exon 59544901 59544980 59544901 ID=Msa0560280-mRNA-1:exon:18414;Parent=Msa0560280-mRNA-1
chr4_1 exon 59545849 59546251 59545849 ID=Msa0560280-mRNA-1:exon:18413;Parent=Msa0560280-mRNA-1
chr4_1 five_prime_UTR 59546123 59546251 59546123 ID=Msa0560280-mRNA-1:five_prime_utr;Parent=Msa0560280-mRNA-1
chr4_1 CDS 59545849 59546122 59545849 ID=Msa0560280-mRNA-1:cds;Parent=Msa0560280-mRNA-1
chr4_1 CDS 59544901 59544980 59544901 ID=Msa0560280-mRNA-1:cds;Parent=Msa0560280-mRNA-1
chr4_1 CDS 59544257 59544727 59544257 ID=Msa0560280-mRNA-1:cds;Parent=Msa0560280-mRNA-1
chr4_1 CDS 59544082 59544168 59544082 ID=Msa0560280-mRNA-1:cds;Parent=Msa0560280-mRNA-1
chr4_1 CDS 59543445 59543588 59543445 ID=Msa0560280-mRNA-1:cds;Parent=Msa0560280-mRNA-1
chr4_1 CDS 59543169 59543360 59543169 ID=Msa0560280-mRNA-1:cds;Parent=Msa0560280-mRNA-1
chr4_1 CDS 59542991 59543077 59542991 ID=Msa0560280-mRNA-1:cds;Parent=Msa0560280-mRNA-1
chr4_1 CDS 59541988 59542689 59541988 ID=Msa0560280-mRNA-1:cds;Parent=Msa0560280-mRNA-1
chr4_1 three_prime_UTR 59541950 59541987 59541950 ID=Msa0560280-mRNA-1:three_prime_utr;Parent=Msa0560280-mRNA-1
Gene Sequence

>Msa0560280

ATGGCTTCCCTTCTTTCATCTGTGCCTAATATCCTAGAGATTGAAAGCGCAAGAGAAGAGGTAGGAGCATCAAAAAAGATGAATGGAGGAGAAGAGAAGGGAGTTTGCTTAACTTGGAAAGATTTATGGGTGACTGTTTCTGCTTCAACAGGAAAAACCAATGAAAGCAAATCAATTCTTCAGGGTCTGACTGGTTATGCAAAGCCTGGTCAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGGAGATTAGGTTCAAACACTAGACAATCAGGGGATATTTTGATCAATGGCAACAAACAAGCATTGGCTTATGGAACCTCGGCATATGTCACACAAGATGATACTTTATTAACAACCTTAACCGTTAAAGAAGCAGTGTACTATTCAGCCCAACTTCAATTACCTGACACAATGTCTAATGATGAGAAAAAAGAAAGAGCTGATTTTACAATAAGAGAAATGGGTCTGCAAGATGCAATCAACACAAGAATTGGAGGGTGGGGTGTTAAAGGCATAAGTGGGGGTCAAAAAAGGAGAGTTAGCATTTGCATTGAGATTCTTACACGTCCTAGACTTCTTTTTCTTGATGAACCAACCAGTGGACTTGATAGTGCAGCTTCTTACTATGTTATGAAAAGAATAGCTTCCTTGGACAAAAAGGATGGAATTCAAAGGACCATTATTGCCTCAATCCATCAACCTAGTACTGAAGTTTTTCAACTTTTCCATAATCTTTGTCTTTTGTCTTCAGGCAAAACAGTTTACTTTGGACCTGCTTCTGCTGCATCTGAGTTTTTTGCTTTGAACGGATTTCCTTGTCCTCCCCTACAAAATCCATCCGATCATTTGCTTAAAACTATAAACAAGGATTTTGATCAGGATATTGAGATGGATTTAGCAGAGACTGGAACAATTTCCATAGAACAAGCAATTGATATCCTTGTGAGCTCATATTCTTCATCCGAAAGAAACCAAGAAATTAAAAATGAAGTATCAGTATTGTCTATAGTATTGTCTTTAAAGGATAATAATTCAACATACAAGAAAAAACATGCTGGCTTCCTCAATCAGTGTTTAGTTCTTACCAGAAGATCTTTTGTGAACATGTTTCGTGATCTTGGCTATTATTGGTTACGCCTTGGCATATATATTGCATTGGCTATAAGTTTAGCCACTGTCTTTAATGATTTGGATAAAAGTAATGGCTCAATTCAGGATAGAGGTTCACTTCTTATGTTTGTGTTTTCATTCCTAACTTTCATGACCATTGGTGGATTCCCTTCTTATGTGGAGGACATGAAGGTATTTGAACGTGAAAGACTAAATGGACACTATGGTGTTACGGCATATGTAATTGGAAACACACTTTCAGCTATTCCATATTTGCTGATGATTTCAGTCATTCCTGGAGCCATAGCATATTACCCTCCAGGTCTTCAAAAAGGATTTGAGCACTTCATATATTTTATCTGTGCTCTATTTTCTTGTCTAATGTTAGTGGAGAGTCTTATGATGATAGTTGCTAGCATTGTCCCTGATTTTCTAATGGGAATCATAACTGGTGCTGGAATTCAAGGGATTATGATGTTGGCAGGTGGATTCTTTAGATTGCCCAATGATCTTCCTAATCCATTTTGGAAATACCCTATGTTCTATATTGCCTTTCATAGGTATGCTTTTCAAGGATCTTATAAGAATGAGTTTGAAGGACTAAAATTTGAAAGAGATGAAATTGGTGGTGGTGGTGGTGGATCACTCAATTACATTAGTGGTGAAGAGATTCTAAGAAATAAATTTCAAGTTGATATGAGTTACTCAAAGTGGGTTGATCTTGGAGTATTGTTGGGTATGATTGTTCTATATCGACTTGTGTTTTTGATTATTATCAAAACTACTGAGAAGCTTAAACCTATTGTTATGTCACTTATGTCGGTGTCTCCTAGGCAAACAAGACAAGTCTTGGAGAATCCTAGTGCCACTCCTTTACATATAGATGTTGTATAA
Protein sequence

>Msa0560280

MASLLSSVPNILEIESAREEVGASKKMNGGEEKGVCLTWKDLWVTVSASTGKTNESKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSNTRQSGDILINGNKQALAYGTSAYVTQDDTLLTTLTVKEAVYYSAQLQLPDTMSNDEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIIASIHQPSTEVFQLFHNLCLLSSGKTVYFGPASAASEFFALNGFPCPPLQNPSDHLLKTINKDFDQDIEMDLAETGTISIEQAIDILVSSYSSSERNQEIKNEVSVLSIVLSLKDNNSTYKKKHAGFLNQCLVLTRRSFVNMFRDLGYYWLRLGIYIALAISLATVFNDLDKSNGSIQDRGSLLMFVFSFLTFMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTLSAIPYLLMISVIPGAIAYYPPGLQKGFEHFIYFICALFSCLMLVESLMMIVASIVPDFLMGIITGAGIQGIMMLAGGFFRLPNDLPNPFWKYPMFYIAFHRYAFQGSYKNEFEGLKFERDEIGGGGGGSLNYISGEEILRNKFQVDMSYSKWVDLGVLLGMIVLYRLVFLIIIKTTEKLKPIVMSLMSVSPRQTRQVLENPSATPLHIDVV*