Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276590 | XP_013462892.1 | 96.532 | 173 | 6 | 0 | 1 | 173 | 1 | 173 | 1.19e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276590 | sp|Q94AU9|RBCX1_ARATH | 70.270 | 148 | 41 | 2 | 25 | 172 | 27 | 171 | 2.86e-71 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276590 | A0A072V552 | 96.532 | 173 | 6 | 0 | 1 | 173 | 1 | 173 | 5.70e-123 | 353 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012380 | Msa0276590 | 0.850875 | 1.279329e-60 | -8.615850e-47 |
| Msa0014410 | Msa0276590 | 0.842915 | 1.931627e-58 | -8.615850e-47 |
| Msa0026110 | Msa0276590 | 0.800676 | 1.289159e-48 | -8.615850e-47 |
| Msa0044180 | Msa0276590 | 0.822305 | 2.543423e-53 | -8.615850e-47 |
| Msa0064550 | Msa0276590 | 0.834129 | 3.582475e-56 | -8.615850e-47 |
| Msa0090860 | Msa0276590 | 0.828114 | 1.076289e-54 | -8.615850e-47 |
| Msa0108070 | Msa0276590 | 0.857247 | 1.858757e-62 | -8.615850e-47 |
| Msa0109490 | Msa0276590 | 0.807056 | 6.091419e-50 | -8.615850e-47 |
| Msa0127580 | Msa0276590 | -0.801255 | 9.813447e-49 | -8.615850e-47 |
| Msa0140290 | Msa0276590 | 0.816515 | 5.315951e-52 | -8.615850e-47 |
| Msa0154220 | Msa0276590 | 0.845426 | 4.091375e-59 | -8.615850e-47 |
| Msa0154240 | Msa0276590 | 0.850947 | 1.221076e-60 | -8.615850e-47 |
| Msa0154270 | Msa0276590 | 0.890005 | 1.456249e-73 | -8.615850e-47 |
| Msa0166570 | Msa0276590 | 0.809291 | 2.034451e-50 | -8.615850e-47 |
| Msa0172180 | Msa0276590 | -0.808765 | 2.637136e-50 | -8.615850e-47 |
| Msa0183560 | Msa0276590 | 0.835290 | 1.828872e-56 | -8.615850e-47 |
| Msa0187980 | Msa0276590 | 0.815882 | 7.362854e-52 | -8.615850e-47 |
| Msa0197030 | Msa0276590 | 0.954594 | 2.082309e-112 | -8.615850e-47 |
| Msa0238860 | Msa0276590 | 0.941080 | 7.738058e-101 | -8.615850e-47 |
| Msa0253160 | Msa0276590 | 0.824036 | 1.003234e-53 | -8.615850e-47 |
| Msa0276590 | Msa0291940 | 0.821253 | 4.453985e-53 | -8.615850e-47 |
| Msa0276590 | Msa0316610 | 0.954414 | 3.121314e-112 | -8.615850e-47 |
| Msa0276590 | Msa0344680 | 0.898731 | 3.979806e-77 | -8.615850e-47 |
| Msa0276590 | Msa0346790 | 0.823594 | 1.273299e-53 | -8.615850e-47 |
| Msa0276590 | Msa0364780 | 0.807373 | 5.218724e-50 | -8.615850e-47 |
| Msa0276590 | Msa0382590 | 0.846828 | 1.699774e-59 | -8.615850e-47 |
| Msa0276590 | Msa0384530 | 0.802075 | 6.661894e-49 | -8.615850e-47 |
| Msa0276590 | Msa0387970 | 0.859282 | 4.608191e-63 | -8.615850e-47 |
| Msa0276590 | Msa0392050 | 0.899500 | 1.863679e-77 | -8.615850e-47 |
| Msa0276590 | Msa0392540 | 0.856968 | 2.246463e-62 | -8.615850e-47 |
| Msa0276590 | Msa0401340 | 0.808597 | 2.864653e-50 | -8.615850e-47 |
| Msa0276590 | Msa0404060 | 0.820075 | 8.306329e-53 | -8.615850e-47 |
| Msa0276590 | Msa0404070 | 0.833573 | 4.936017e-56 | -8.615850e-47 |
| Msa0276590 | Msa0412190 | 0.833799 | 4.333559e-56 | -8.615850e-47 |
| Msa0276590 | Msa0432720 | 0.854965 | 8.658664e-62 | -8.615850e-47 |
| Msa0276590 | Msa0437550 | 0.849231 | 3.692398e-60 | -8.615850e-47 |
| Msa0276590 | Msa0440310 | 0.857728 | 1.339070e-62 | -8.615850e-47 |
| Msa0276590 | Msa0448120 | 0.811618 | 6.397843e-51 | -8.615850e-47 |
| Msa0276590 | Msa0456760 | 0.828167 | 1.044949e-54 | -8.615850e-47 |
| Msa0276590 | Msa0469950 | 0.899920 | 1.228440e-77 | -8.615850e-47 |
| Msa0276590 | Msa0481490 | 0.840576 | 8.003241e-58 | -8.615850e-47 |
| Msa0276590 | Msa0487490 | 0.837969 | 3.798433e-57 | -8.615850e-47 |
| Msa0276590 | Msa0504090 | 0.812433 | 4.250862e-51 | -8.615850e-47 |
| Msa0276590 | Msa0525270 | 0.876304 | 1.552578e-68 | -8.615850e-47 |
| Msa0276590 | Msa0525280 | 0.886584 | 3.012261e-72 | -8.615850e-47 |
| Msa0276590 | Msa0530340 | 0.863015 | 3.365710e-64 | -8.615850e-47 |
| Msa0276590 | Msa0545230 | 0.806694 | 7.262287e-50 | -8.615850e-47 |
| Msa0276590 | Msa0546080 | 0.804282 | 2.328499e-49 | -8.615850e-47 |
| Msa0276590 | Msa0548210 | 0.866235 | 3.306426e-65 | -8.615850e-47 |
| Msa0276590 | Msa0549540 | 0.902450 | 9.578020e-79 | -8.615850e-47 |
| Msa0276590 | Msa0549760 | 0.816354 | 5.776065e-52 | -8.615850e-47 |
| Msa0276590 | Msa0556070 | 0.833361 | 5.573209e-56 | -8.615850e-47 |
| Msa0276590 | Msa0570680 | 0.826097 | 3.270901e-54 | -8.615850e-47 |
| Msa0276590 | Msa0577050 | 0.806314 | 8.734705e-50 | -8.615850e-47 |
| Msa0276590 | Msa0604880 | 0.872353 | 3.395233e-67 | -8.615850e-47 |
| Msa0276590 | Msa0605250 | 0.879901 | 8.531601e-70 | -8.615850e-47 |
| Msa0276590 | Msa0609790 | 0.830056 | 3.639891e-55 | -8.615850e-47 |
| Msa0276590 | Msa0610780 | 0.801345 | 9.406245e-49 | -8.615850e-47 |
| Msa0276590 | Msa0610810 | 0.818103 | 2.334024e-52 | -8.615850e-47 |
| Msa0276590 | Msa0622250 | 0.843411 | 1.424535e-58 | -8.615850e-47 |
| Msa0276590 | Msa0624040 | 0.806796 | 6.912695e-50 | -8.615850e-47 |
| Msa0276590 | Msa0627050 | 0.872773 | 2.458438e-67 | -8.615850e-47 |
| Msa0276590 | Msa0636720 | 0.831662 | 1.470090e-55 | -8.615850e-47 |
| Msa0276590 | Msa0644630 | 0.847396 | 1.187729e-59 | -8.615850e-47 |
| Msa0276590 | Msa0646190 | 0.903086 | 4.988253e-79 | -8.615850e-47 |
| Msa0276590 | Msa0646340 | 0.822799 | 1.951934e-53 | -8.615850e-47 |
| Msa0276590 | Msa0651310 | 0.837743 | 4.341227e-57 | -8.615850e-47 |
| Msa0276590 | Msa0675010 | 0.819248 | 1.283060e-52 | -8.615850e-47 |
| Msa0276590 | Msa0681210 | 0.822273 | 2.587578e-53 | -8.615850e-47 |
| Msa0276590 | Msa0685890 | 0.850823 | 1.323464e-60 | -8.615850e-47 |
| Msa0276590 | Msa0693400 | 0.819407 | 1.180343e-52 | -8.615850e-47 |
| Msa0276590 | Msa0693500 | 0.823054 | 1.702337e-53 | -8.615850e-47 |
| Msa0276590 | Msa0740210 | 0.821871 | 3.206787e-53 | -8.615850e-47 |
| Msa0276590 | Msa0742090 | 0.815219 | 1.034165e-51 | -8.615850e-47 |
| Msa0276590 | Msa0748330 | 0.835861 | 1.311610e-56 | -8.615850e-47 |
| Msa0276590 | Msa0749150 | 0.805033 | 1.622663e-49 | -8.615850e-47 |
| Msa0276590 | Msa0781390 | 0.831036 | 2.095321e-55 | -8.615850e-47 |
| Msa0276590 | Msa0790640 | 0.818998 | 1.463090e-52 | -8.615850e-47 |
| Msa0276590 | Msa0793100 | 0.813064 | 3.092435e-51 | -8.615850e-47 |
| Msa0276590 | Msa0806720 | 0.829306 | 5.541372e-55 | -8.615850e-47 |
| Msa0276590 | Msa0806760 | 0.831149 | 1.966478e-55 | -8.615850e-47 |
| Msa0276590 | Msa0860920 | 0.823629 | 1.249872e-53 | -8.615850e-47 |
| Msa0276590 | Msa0879650 | 0.811322 | 7.419648e-51 | -8.615850e-47 |
| Msa0276590 | Msa0882700 | 0.814057 | 1.870052e-51 | -8.615850e-47 |
| Msa0276590 | Msa0944690 | 0.839279 | 1.742258e-57 | -8.615850e-47 |
| Msa0276590 | Msa0945960 | 0.813743 | 2.193452e-51 | -8.615850e-47 |
| Msa0276590 | Msa0984000 | 0.877788 | 4.742695e-69 | -8.615850e-47 |
| Msa0276590 | Msa1082150 | 0.844173 | 8.905809e-59 | -8.615850e-47 |
| Msa0276590 | Msa1119570 | 0.828079 | 1.097122e-54 | -8.615850e-47 |
| Msa0276590 | Msa1137940 | 0.816290 | 5.967693e-52 | -8.615850e-47 |
| Msa0276590 | Msa1144730 | 0.900053 | 1.075743e-77 | -8.615850e-47 |
| Msa0276590 | Msa1158090 | 0.827597 | 1.432658e-54 | -8.615850e-47 |
| Msa0276590 | Msa1173380 | 0.870344 | 1.566025e-66 | -8.615850e-47 |
| Msa0276590 | Msa1180050 | 0.808446 | 3.085522e-50 | -8.615850e-47 |
| Msa0276590 | Msa1182800 | 0.815092 | 1.103492e-51 | -8.615850e-47 |
| Msa0276590 | Msa1184010 | 0.816237 | 6.133226e-52 | -8.615850e-47 |
| Msa0276590 | Msa1228350 | 0.805085 | 1.582665e-49 | -8.615850e-47 |
| Msa0276590 | Msa1239900 | 0.816249 | 6.096915e-52 | -8.615850e-47 |
| Msa0276590 | Msa1252300 | 0.807323 | 5.345485e-50 | -8.615850e-47 |
| Msa0276590 | Msa1255020 | 0.831038 | 2.092989e-55 | -8.615850e-47 |
| Msa0276590 | Msa1270770 | 0.805487 | 1.303713e-49 | -8.615850e-47 |
| Msa0276590 | Msa1281270 | 0.842387 | 2.668408e-58 | -8.615850e-47 |
| Msa0276590 | Msa1295470 | 0.827470 | 1.537455e-54 | -8.615850e-47 |
| Msa0276590 | Msa1320380 | 0.837498 | 5.017776e-57 | -8.615850e-47 |
| Msa0276590 | Msa1349810 | 0.850968 | 1.204945e-60 | -8.615850e-47 |
| Msa0276590 | Msa1354090 | 0.846282 | 2.396084e-59 | -8.615850e-47 |
| Msa0276590 | Msa1358340 | 0.842272 | 2.862327e-58 | -8.615850e-47 |
| Msa0276590 | Msa1359890 | 0.898754 | 3.891948e-77 | -8.615850e-47 |
| Msa0276590 | Msa1375780 | 0.804176 | 2.449809e-49 | -8.615850e-47 |
| Msa0276590 | Msa1394900 | 0.809902 | 1.503966e-50 | -8.615850e-47 |
| Msa0276590 | Msa1406020 | 0.861205 | 1.207914e-63 | -8.615850e-47 |
| Msa0276590 | Msa1434660 | 0.860435 | 2.069630e-63 | -8.615850e-47 |
| Msa0276590 | Msa1459540 | 0.815022 | 1.143797e-51 | -8.615850e-47 |
| Msa0276590 | Msa1466350 | 0.803909 | 2.783015e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276590 | MtrunA17_Chr2g0289141 | 96.532 | 173 | 6 | 0 | 1 | 173 | 1 | 173 | 1.10e-126 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276590 | AT4G04330.1 | 70.270 | 148 | 41 | 2 | 25 | 172 | 27 | 171 | 2.90e-72 | 215 |
Find 47 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTGTCCAACCACTTA+TGG | 0.272786 | 2_3:-8867628 | None:intergenic |
| CTCTTGCCAGCTGGCCAAAA+AGG | 0.282297 | 2_3:-8866455 | None:intergenic |
| ATATTGATATGTATGGAAAT+TGG | 0.302745 | 2_3:+8867516 | Msa0276590:three_prime_UTR |
| TGTCCCATTCAAAATCCTTT+TGG | 0.366494 | 2_3:-8867221 | None:intergenic |
| TGAAGCATATGTTGAGCTAA+TGG | 0.380963 | 2_3:+8866851 | Msa0276590:CDS |
| TTGTTGGTGCATGGTGTAGC+AGG | 0.403399 | 2_3:-8866425 | None:intergenic |
| ACTCTAACACGAGGCTTATG+AGG | 0.410584 | 2_3:+8867391 | Msa0276590:CDS |
| ATTAGCTCAACATATGCTTC+AGG | 0.434378 | 2_3:-8866849 | None:intergenic |
| AAATCGAGTTAGACCATAAG+TGG | 0.434411 | 2_3:+8867615 | Msa0276590:three_prime_UTR |
| GTGCAACATATTGATATGTA+TGG | 0.445645 | 2_3:+8867509 | Msa0276590:three_prime_UTR |
| GAGCTCCTTCTCTTGCCAGC+TGG | 0.451237 | 2_3:-8866464 | None:intergenic |
| TTGAATAGCCCTACGCATAA+TGG | 0.455624 | 2_3:+8867093 | Msa0276590:intron |
| GTTTGATCAATGGGAATGAA+AGG | 0.458962 | 2_3:-8867478 | None:intergenic |
| CTTCTCAGTTTCAGAACGAC+TGG | 0.465661 | 2_3:-8867430 | None:intergenic |
| GAAAGGGCTTGCTTTGCTGC+AGG | 0.490075 | 2_3:-8867461 | None:intergenic |
| TTTGATCAATGGGAATGAAA+GGG | 0.496972 | 2_3:-8867477 | None:intergenic |
| TGTTGAGCTAATGGAATTTG+TGG | 0.500110 | 2_3:+8866860 | Msa0276590:CDS |
| TACATAGCTCAGTGTTTGCA+TGG | 0.509009 | 2_3:+8867579 | Msa0276590:three_prime_UTR |
| TACATATCAATATGTTGCAC+AGG | 0.515031 | 2_3:-8867506 | None:intergenic |
| ACTTGTCACCATCATCTAAC+GGG | 0.516413 | 2_3:-8866890 | None:intergenic |
| CATTTACCTCCATTATGCGT+AGG | 0.520633 | 2_3:-8867102 | None:intergenic |
| TCATCAAGACATAAGAACTT+AGG | 0.525555 | 2_3:+8866936 | Msa0276590:CDS |
| GGTGTAGCAGGGTAAACATA+AGG | 0.525917 | 2_3:-8866413 | None:intergenic |
| ATTTACCTCCATTATGCGTA+GGG | 0.537053 | 2_3:-8867101 | None:intergenic |
| ATGTATGGAAATTGGAAAGA+TGG | 0.540841 | 2_3:+8867524 | Msa0276590:three_prime_UTR |
| TTTGGCCAGCTGGCAAGAGA+AGG | 0.542150 | 2_3:+8866459 | Msa0276590:CDS |
| AATCGTTGCTGCTCAACTTG+AGG | 0.547786 | 2_3:+8866705 | Msa0276590:CDS |
| GAGATCAGCATACTGCCAAA+AGG | 0.559923 | 2_3:+8867206 | Msa0276590:CDS |
| AGAAGCAACACCGGAAGCAA+AGG | 0.569743 | 2_3:+8866639 | Msa0276590:CDS |
| AACTTGTCACCATCATCTAA+CGG | 0.580454 | 2_3:-8866891 | None:intergenic |
| TTCTGAAACTGAGAAGTGAA+TGG | 0.580741 | 2_3:+8867437 | Msa0276590:exon |
| CAGTGTAGGTGAAGAAATTG+TGG | 0.581309 | 2_3:-8866675 | None:intergenic |
| TAGAGCTGAAGATGATTCCA+TGG | 0.584821 | 2_3:-8866375 | None:intergenic |
| TGCAACAAAATGTTTGTACC+TGG | 0.588133 | 2_3:+8866509 | Msa0276590:CDS |
| CGAGTTAGACCATAAGTGGT+TGG | 0.590124 | 2_3:+8867619 | Msa0276590:three_prime_UTR |
| CTCTAACACGAGGCTTATGA+GGG | 0.595924 | 2_3:+8867392 | Msa0276590:CDS |
| TGTTGGTGCATGGTGTAGCA+GGG | 0.612247 | 2_3:-8866424 | None:intergenic |
| AGGATTCGGAGAAGCAACAC+CGG | 0.623746 | 2_3:+8866630 | Msa0276590:intron |
| TGGCAGAAGACTCACTCGCA+TGG | 0.631217 | 2_3:+8867544 | Msa0276590:three_prime_UTR |
| GCTTATGAGGGATTACGTCT+CGG | 0.635882 | 2_3:+8867404 | Msa0276590:CDS |
| GATAAACACCCGTTAGATGA+TGG | 0.636151 | 2_3:+8866882 | Msa0276590:CDS |
| TGATGATTCTCTGAACATAG+TGG | 0.639406 | 2_3:-8866919 | None:intergenic |
| TGTAGGTGAAGAAATTGTGG+AGG | 0.663333 | 2_3:-8866672 | None:intergenic |
| AATAGCCCTACGCATAATGG+AGG | 0.664082 | 2_3:+8867096 | Msa0276590:intron |
| TTTGTTGCATTGCAACCGTG+TGG | 0.685225 | 2_3:-8866495 | None:intergenic |
| GGAGCTCTCAATTATCCACA+CGG | 0.710162 | 2_3:+8866480 | Msa0276590:CDS |
| TGGTCACTGACTCTAACACG+AGG | 0.758847 | 2_3:+8867382 | Msa0276590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGGTGTAATATTATATAT+AGG | + | chr2_3:8867182-8867201 | Msa0276590:intron | 15.0% |
| !! | TATGGTGTAATATTATATAT+AGG | + | chr2_3:8867182-8867201 | Msa0276590:intron | 15.0% |
| !! | AAAACAAACTAAAACAACAA+AGG | - | chr2_3:8866750-8866769 | None:intergenic | 20.0% |
| !! | AATAGACACTTAACTAATAA+AGG | - | chr2_3:8866988-8867007 | None:intergenic | 20.0% |
| !! | ATATTGATATGTATGGAAAT+TGG | + | chr2_3:8867516-8867535 | Msa0276590:three_prime_UTR | 20.0% |
| !! | AAAACAAACTAAAACAACAA+AGG | - | chr2_3:8866750-8866769 | None:intergenic | 20.0% |
| !! | AATAGACACTTAACTAATAA+AGG | - | chr2_3:8866988-8867007 | None:intergenic | 20.0% |
| !! | ATATTGATATGTATGGAAAT+TGG | + | chr2_3:8867516-8867535 | Msa0276590:three_prime_UTR | 20.0% |
| !! | TTACAACTTCAATTTTGTAC+TGG | + | chr2_3:8866537-8866556 | Msa0276590:intron | 25.0% |
| ! | AAAACAACAAAGGCAAATAA+AGG | - | chr2_3:8866740-8866759 | None:intergenic | 25.0% |
| ! | CACTTAACTAATAAAGGATT+GGG | - | chr2_3:8866982-8867001 | None:intergenic | 25.0% |
| ! | ACACTTAACTAATAAAGGAT+TGG | - | chr2_3:8866983-8867002 | None:intergenic | 25.0% |
| ! | TAACCAACAACTATTCTATA+TGG | + | chr2_3:8867011-8867030 | Msa0276590:intron | 25.0% |
| !!! | AGTTTTGATTGCGTATAATA+TGG | + | chr2_3:8867164-8867183 | Msa0276590:intron | 25.0% |
| ! | GGAAGTTGAATAAATTTAGT+AGG | - | chr2_3:8867319-8867338 | None:intergenic | 25.0% |
| ! | AACAGTTACATGCATTATTA+AGG | - | chr2_3:8867340-8867359 | None:intergenic | 25.0% |
| !! | TTACAACTTCAATTTTGTAC+TGG | + | chr2_3:8866537-8866556 | Msa0276590:intron | 25.0% |
| ! | AAAACAACAAAGGCAAATAA+AGG | - | chr2_3:8866740-8866759 | None:intergenic | 25.0% |
| ! | CACTTAACTAATAAAGGATT+GGG | - | chr2_3:8866982-8867001 | None:intergenic | 25.0% |
| ! | ACACTTAACTAATAAAGGAT+TGG | - | chr2_3:8866983-8867002 | None:intergenic | 25.0% |
| ! | TAACCAACAACTATTCTATA+TGG | + | chr2_3:8867011-8867030 | Msa0276590:intron | 25.0% |
| !!! | AGTTTTGATTGCGTATAATA+TGG | + | chr2_3:8867164-8867183 | Msa0276590:intron | 25.0% |
| ! | GGAAGTTGAATAAATTTAGT+AGG | - | chr2_3:8867319-8867338 | None:intergenic | 25.0% |
| ! | AACAGTTACATGCATTATTA+AGG | - | chr2_3:8867340-8867359 | None:intergenic | 25.0% |
| !! | AACTTCAATTTTGTACTGGT+TGG | + | chr2_3:8866541-8866560 | Msa0276590:intron | 30.0% |
| AATAGTGTGCTATGTTATCT+TGG | + | chr2_3:8866603-8866622 | Msa0276590:intron | 30.0% | |
| TCATCAAGACATAAGAACTT+AGG | + | chr2_3:8866936-8866955 | Msa0276590:CDS | 30.0% | |
| AAGACATAAGAACTTAGGTA+AGG | + | chr2_3:8866941-8866960 | Msa0276590:intron | 30.0% | |
| TCACCATATAGAATAGTTGT+TGG | - | chr2_3:8867017-8867036 | None:intergenic | 30.0% | |
| ! | AAAACTTGCTTAACAAGTGA+TGG | - | chr2_3:8867150-8867169 | None:intergenic | 30.0% |
| TTTGATCAATGGGAATGAAA+GGG | - | chr2_3:8867480-8867499 | None:intergenic | 30.0% | |
| TACATATCAATATGTTGCAC+AGG | - | chr2_3:8867509-8867528 | None:intergenic | 30.0% | |
| GTGCAACATATTGATATGTA+TGG | + | chr2_3:8867509-8867528 | Msa0276590:three_prime_UTR | 30.0% | |
| ATGTATGGAAATTGGAAAGA+TGG | + | chr2_3:8867524-8867543 | Msa0276590:three_prime_UTR | 30.0% | |
| !! | AACTTCAATTTTGTACTGGT+TGG | + | chr2_3:8866541-8866560 | Msa0276590:intron | 30.0% |
| AATAGTGTGCTATGTTATCT+TGG | + | chr2_3:8866603-8866622 | Msa0276590:intron | 30.0% | |
| TCATCAAGACATAAGAACTT+AGG | + | chr2_3:8866936-8866955 | Msa0276590:CDS | 30.0% | |
| AAGACATAAGAACTTAGGTA+AGG | + | chr2_3:8866941-8866960 | Msa0276590:intron | 30.0% | |
| TCACCATATAGAATAGTTGT+TGG | - | chr2_3:8867017-8867036 | None:intergenic | 30.0% | |
| ! | AAAACTTGCTTAACAAGTGA+TGG | - | chr2_3:8867150-8867169 | None:intergenic | 30.0% |
| TTTGATCAATGGGAATGAAA+GGG | - | chr2_3:8867480-8867499 | None:intergenic | 30.0% | |
| TACATATCAATATGTTGCAC+AGG | - | chr2_3:8867509-8867528 | None:intergenic | 30.0% | |
| GTGCAACATATTGATATGTA+TGG | + | chr2_3:8867509-8867528 | Msa0276590:three_prime_UTR | 30.0% | |
| ATGTATGGAAATTGGAAAGA+TGG | + | chr2_3:8867524-8867543 | Msa0276590:three_prime_UTR | 30.0% | |
| ! | CCAAAAAGGATAGCTTTTGT+TGG | - | chr2_3:8866444-8866463 | None:intergenic | 35.0% |
| ! | CCAACAAAAGCTATCCTTTT+TGG | + | chr2_3:8866441-8866460 | Msa0276590:CDS | 35.0% |
| TGCAACAAAATGTTTGTACC+TGG | + | chr2_3:8866509-8866528 | Msa0276590:CDS | 35.0% | |
| ACAAAATGTTTGTACCTGGT+CGG | + | chr2_3:8866513-8866532 | Msa0276590:intron | 35.0% | |
| ! | GAAGAAATTGTGGAGGTTTT+TGG | - | chr2_3:8866668-8866687 | None:intergenic | 35.0% |
| !!! | AACGATTTTAACTGCAGTGT+AGG | - | chr2_3:8866692-8866711 | None:intergenic | 35.0% |
| CAACAAAGGCAAATAAAGGA+GGG | - | chr2_3:8866736-8866755 | None:intergenic | 35.0% | |
| ACAACAAAGGCAAATAAAGG+AGG | - | chr2_3:8866737-8866756 | None:intergenic | 35.0% | |
| ATTAGCTCAACATATGCTTC+AGG | - | chr2_3:8866852-8866871 | None:intergenic | 35.0% | |
| TGAAGCATATGTTGAGCTAA+TGG | + | chr2_3:8866851-8866870 | Msa0276590:CDS | 35.0% | |
| TGTTGAGCTAATGGAATTTG+TGG | + | chr2_3:8866860-8866879 | Msa0276590:CDS | 35.0% | |
| AACTTGTCACCATCATCTAA+CGG | - | chr2_3:8866894-8866913 | None:intergenic | 35.0% | |
| TGATGATTCTCTGAACATAG+TGG | - | chr2_3:8866922-8866941 | None:intergenic | 35.0% | |
| AAATCCTGTAAACTGATGTG+TGG | + | chr2_3:8867053-8867072 | Msa0276590:intron | 35.0% | |
| ATTTACCTCCATTATGCGTA+GGG | - | chr2_3:8867104-8867123 | None:intergenic | 35.0% | |
| ! | ACTGCCAAAAGGATTTTGAA+TGG | + | chr2_3:8867217-8867236 | Msa0276590:CDS | 35.0% |
| ! | CTGCCAAAAGGATTTTGAAT+GGG | + | chr2_3:8867218-8867237 | Msa0276590:CDS | 35.0% |
| ! | TGTCCCATTCAAAATCCTTT+TGG | - | chr2_3:8867224-8867243 | None:intergenic | 35.0% |
| !!! | CTTGAAGCGTTTAGCTTTTA+AGG | + | chr2_3:8867245-8867264 | Msa0276590:CDS | 35.0% |
| !! | TTCTGAAACTGAGAAGTGAA+TGG | + | chr2_3:8867437-8867456 | Msa0276590:exon | 35.0% |
| GTTTGATCAATGGGAATGAA+AGG | - | chr2_3:8867481-8867500 | None:intergenic | 35.0% | |
| !! | CAGGCTTTTGTTTGATCAAT+GGG | - | chr2_3:8867490-8867509 | None:intergenic | 35.0% |
| !! | ACAGGCTTTTGTTTGATCAA+TGG | - | chr2_3:8867491-8867510 | None:intergenic | 35.0% |
| AAATCGAGTTAGACCATAAG+TGG | + | chr2_3:8867615-8867634 | Msa0276590:three_prime_UTR | 35.0% | |
| ! | CCAAAAAGGATAGCTTTTGT+TGG | - | chr2_3:8866444-8866463 | None:intergenic | 35.0% |
| ! | CCAACAAAAGCTATCCTTTT+TGG | + | chr2_3:8866441-8866460 | Msa0276590:CDS | 35.0% |
| TGCAACAAAATGTTTGTACC+TGG | + | chr2_3:8866509-8866528 | Msa0276590:CDS | 35.0% | |
| ACAAAATGTTTGTACCTGGT+CGG | + | chr2_3:8866513-8866532 | Msa0276590:intron | 35.0% | |
| ! | GAAGAAATTGTGGAGGTTTT+TGG | - | chr2_3:8866668-8866687 | None:intergenic | 35.0% |
| !!! | AACGATTTTAACTGCAGTGT+AGG | - | chr2_3:8866692-8866711 | None:intergenic | 35.0% |
| CAACAAAGGCAAATAAAGGA+GGG | - | chr2_3:8866736-8866755 | None:intergenic | 35.0% | |
| ACAACAAAGGCAAATAAAGG+AGG | - | chr2_3:8866737-8866756 | None:intergenic | 35.0% | |
| ATTAGCTCAACATATGCTTC+AGG | - | chr2_3:8866852-8866871 | None:intergenic | 35.0% | |
| TGAAGCATATGTTGAGCTAA+TGG | + | chr2_3:8866851-8866870 | Msa0276590:CDS | 35.0% | |
| TGTTGAGCTAATGGAATTTG+TGG | + | chr2_3:8866860-8866879 | Msa0276590:CDS | 35.0% | |
| AACTTGTCACCATCATCTAA+CGG | - | chr2_3:8866894-8866913 | None:intergenic | 35.0% | |
| TGATGATTCTCTGAACATAG+TGG | - | chr2_3:8866922-8866941 | None:intergenic | 35.0% | |
| AAATCCTGTAAACTGATGTG+TGG | + | chr2_3:8867053-8867072 | Msa0276590:intron | 35.0% | |
| ATTTACCTCCATTATGCGTA+GGG | - | chr2_3:8867104-8867123 | None:intergenic | 35.0% | |
| ! | ACTGCCAAAAGGATTTTGAA+TGG | + | chr2_3:8867217-8867236 | Msa0276590:CDS | 35.0% |
| ! | CTGCCAAAAGGATTTTGAAT+GGG | + | chr2_3:8867218-8867237 | Msa0276590:CDS | 35.0% |
| ! | TGTCCCATTCAAAATCCTTT+TGG | - | chr2_3:8867224-8867243 | None:intergenic | 35.0% |
| !!! | CTTGAAGCGTTTAGCTTTTA+AGG | + | chr2_3:8867245-8867264 | Msa0276590:CDS | 35.0% |
| !! | TTCTGAAACTGAGAAGTGAA+TGG | + | chr2_3:8867437-8867456 | Msa0276590:exon | 35.0% |
| GTTTGATCAATGGGAATGAA+AGG | - | chr2_3:8867481-8867500 | None:intergenic | 35.0% | |
| !! | CAGGCTTTTGTTTGATCAAT+GGG | - | chr2_3:8867490-8867509 | None:intergenic | 35.0% |
| !! | ACAGGCTTTTGTTTGATCAA+TGG | - | chr2_3:8867491-8867510 | None:intergenic | 35.0% |
| AAATCGAGTTAGACCATAAG+TGG | + | chr2_3:8867615-8867634 | Msa0276590:three_prime_UTR | 35.0% | |
| ATTGAAGTTGTAAACCGACC+AGG | - | chr2_3:8866530-8866549 | None:intergenic | 40.0% | |
| TGCTATGTTATCTTGGATGC+AGG | + | chr2_3:8866610-8866629 | Msa0276590:intron | 40.0% | |
| GTTATCTTGGATGCAGGATT+CGG | + | chr2_3:8866616-8866635 | Msa0276590:intron | 40.0% | |
| TGTAGGTGAAGAAATTGTGG+AGG | - | chr2_3:8866675-8866694 | None:intergenic | 40.0% | |
| CAGTGTAGGTGAAGAAATTG+TGG | - | chr2_3:8866678-8866697 | None:intergenic | 40.0% | |
| CAGGATTATAACTCTGCTCA+TGG | - | chr2_3:8866833-8866852 | None:intergenic | 40.0% | |
| GATAAACACCCGTTAGATGA+TGG | + | chr2_3:8866882-8866901 | Msa0276590:CDS | 40.0% | |
| ACTTGTCACCATCATCTAAC+GGG | - | chr2_3:8866893-8866912 | None:intergenic | 40.0% | |
| TTGAATAGCCCTACGCATAA+TGG | + | chr2_3:8867093-8867112 | Msa0276590:intron | 40.0% | |
| CATTTACCTCCATTATGCGT+AGG | - | chr2_3:8867105-8867124 | None:intergenic | 40.0% | |
| ! | CTACGCATAATGGAGGTAAA+TGG | + | chr2_3:8867103-8867122 | Msa0276590:intron | 40.0% |
| GAGGTAAATGGATGACTAGT+TGG | + | chr2_3:8867115-8867134 | Msa0276590:intron | 40.0% | |
| TACATAGCTCAGTGTTTGCA+TGG | + | chr2_3:8867579-8867598 | Msa0276590:three_prime_UTR | 40.0% | |
| ATTGAAGTTGTAAACCGACC+AGG | - | chr2_3:8866530-8866549 | None:intergenic | 40.0% | |
| TGCTATGTTATCTTGGATGC+AGG | + | chr2_3:8866610-8866629 | Msa0276590:intron | 40.0% | |
| GTTATCTTGGATGCAGGATT+CGG | + | chr2_3:8866616-8866635 | Msa0276590:intron | 40.0% | |
| TGTAGGTGAAGAAATTGTGG+AGG | - | chr2_3:8866675-8866694 | None:intergenic | 40.0% | |
| CAGTGTAGGTGAAGAAATTG+TGG | - | chr2_3:8866678-8866697 | None:intergenic | 40.0% | |
| CAGGATTATAACTCTGCTCA+TGG | - | chr2_3:8866833-8866852 | None:intergenic | 40.0% | |
| GATAAACACCCGTTAGATGA+TGG | + | chr2_3:8866882-8866901 | Msa0276590:CDS | 40.0% | |
| ACTTGTCACCATCATCTAAC+GGG | - | chr2_3:8866893-8866912 | None:intergenic | 40.0% | |
| TTGAATAGCCCTACGCATAA+TGG | + | chr2_3:8867093-8867112 | Msa0276590:intron | 40.0% | |
| CATTTACCTCCATTATGCGT+AGG | - | chr2_3:8867105-8867124 | None:intergenic | 40.0% | |
| ! | CTACGCATAATGGAGGTAAA+TGG | + | chr2_3:8867103-8867122 | Msa0276590:intron | 40.0% |
| GAGGTAAATGGATGACTAGT+TGG | + | chr2_3:8867115-8867134 | Msa0276590:intron | 40.0% | |
| TACATAGCTCAGTGTTTGCA+TGG | + | chr2_3:8867579-8867598 | Msa0276590:three_prime_UTR | 40.0% | |
| GGTGTAGCAGGGTAAACATA+AGG | - | chr2_3:8866416-8866435 | None:intergenic | 45.0% | |
| ! | GGATAGCTTTTGTTGGTGCA+TGG | - | chr2_3:8866437-8866456 | None:intergenic | 45.0% |
| GGAGCTCTCAATTATCCACA+CGG | + | chr2_3:8866480-8866499 | Msa0276590:CDS | 45.0% | |
| TTTGTTGCATTGCAACCGTG+TGG | - | chr2_3:8866498-8866517 | None:intergenic | 45.0% | |
| !! | TTTTTGGCAGCCTTTGCTTC+CGG | - | chr2_3:8866652-8866671 | None:intergenic | 45.0% |
| AATCGTTGCTGCTCAACTTG+AGG | + | chr2_3:8866705-8866724 | Msa0276590:CDS | 45.0% | |
| AGAGCCACACATCAGTTTAC+AGG | - | chr2_3:8867060-8867079 | None:intergenic | 45.0% | |
| AATAGCCCTACGCATAATGG+AGG | + | chr2_3:8867096-8867115 | Msa0276590:intron | 45.0% | |
| GAGATCAGCATACTGCCAAA+AGG | + | chr2_3:8867206-8867225 | Msa0276590:CDS | 45.0% | |
| TAGCGTTGTCCTCTTGTAGA+TGG | + | chr2_3:8867362-8867381 | Msa0276590:intron | 45.0% | |
| AGTCAGTGACCATCTACAAG+AGG | - | chr2_3:8867374-8867393 | None:intergenic | 45.0% | |
| ACTCTAACACGAGGCTTATG+AGG | + | chr2_3:8867391-8867410 | Msa0276590:CDS | 45.0% | |
| CTCTAACACGAGGCTTATGA+GGG | + | chr2_3:8867392-8867411 | Msa0276590:CDS | 45.0% | |
| GCTTATGAGGGATTACGTCT+CGG | + | chr2_3:8867404-8867423 | Msa0276590:CDS | 45.0% | |
| CTTCTCAGTTTCAGAACGAC+TGG | - | chr2_3:8867433-8867452 | None:intergenic | 45.0% | |
| CGAGTTAGACCATAAGTGGT+TGG | + | chr2_3:8867619-8867638 | Msa0276590:three_prime_UTR | 45.0% | |
| GGTGTAGCAGGGTAAACATA+AGG | - | chr2_3:8866416-8866435 | None:intergenic | 45.0% | |
| ! | GGATAGCTTTTGTTGGTGCA+TGG | - | chr2_3:8866437-8866456 | None:intergenic | 45.0% |
| GGAGCTCTCAATTATCCACA+CGG | + | chr2_3:8866480-8866499 | Msa0276590:CDS | 45.0% | |
| TTTGTTGCATTGCAACCGTG+TGG | - | chr2_3:8866498-8866517 | None:intergenic | 45.0% | |
| !! | TTTTTGGCAGCCTTTGCTTC+CGG | - | chr2_3:8866652-8866671 | None:intergenic | 45.0% |
| AATCGTTGCTGCTCAACTTG+AGG | + | chr2_3:8866705-8866724 | Msa0276590:CDS | 45.0% | |
| AGAGCCACACATCAGTTTAC+AGG | - | chr2_3:8867060-8867079 | None:intergenic | 45.0% | |
| AATAGCCCTACGCATAATGG+AGG | + | chr2_3:8867096-8867115 | Msa0276590:intron | 45.0% | |
| GAGATCAGCATACTGCCAAA+AGG | + | chr2_3:8867206-8867225 | Msa0276590:CDS | 45.0% | |
| TAGCGTTGTCCTCTTGTAGA+TGG | + | chr2_3:8867362-8867381 | Msa0276590:intron | 45.0% | |
| AGTCAGTGACCATCTACAAG+AGG | - | chr2_3:8867374-8867393 | None:intergenic | 45.0% | |
| ACTCTAACACGAGGCTTATG+AGG | + | chr2_3:8867391-8867410 | Msa0276590:CDS | 45.0% | |
| CTCTAACACGAGGCTTATGA+GGG | + | chr2_3:8867392-8867411 | Msa0276590:CDS | 45.0% | |
| GCTTATGAGGGATTACGTCT+CGG | + | chr2_3:8867404-8867423 | Msa0276590:CDS | 45.0% | |
| CTTCTCAGTTTCAGAACGAC+TGG | - | chr2_3:8867433-8867452 | None:intergenic | 45.0% | |
| TGTTGGTGCATGGTGTAGCA+GGG | - | chr2_3:8866427-8866446 | None:intergenic | 50.0% | |
| TTGTTGGTGCATGGTGTAGC+AGG | - | chr2_3:8866428-8866447 | None:intergenic | 50.0% | |
| !! | AGCTATCCTTTTTGGCCAGC+TGG | + | chr2_3:8866449-8866468 | Msa0276590:CDS | 50.0% |
| AGGATTCGGAGAAGCAACAC+CGG | + | chr2_3:8866630-8866649 | Msa0276590:intron | 50.0% | |
| AGAAGCAACACCGGAAGCAA+AGG | + | chr2_3:8866639-8866658 | Msa0276590:CDS | 50.0% | |
| !! | ACTGATGTGTGGCTCTGACA+TGG | + | chr2_3:8867064-8867083 | Msa0276590:intron | 50.0% |
| !! | TGGTCACTGACTCTAACACG+AGG | + | chr2_3:8867382-8867401 | Msa0276590:CDS | 50.0% |
| TGTTGGTGCATGGTGTAGCA+GGG | - | chr2_3:8866427-8866446 | None:intergenic | 50.0% | |
| TTGTTGGTGCATGGTGTAGC+AGG | - | chr2_3:8866428-8866447 | None:intergenic | 50.0% | |
| !! | AGCTATCCTTTTTGGCCAGC+TGG | + | chr2_3:8866449-8866468 | Msa0276590:CDS | 50.0% |
| AGGATTCGGAGAAGCAACAC+CGG | + | chr2_3:8866630-8866649 | Msa0276590:intron | 50.0% | |
| AGAAGCAACACCGGAAGCAA+AGG | + | chr2_3:8866639-8866658 | Msa0276590:CDS | 50.0% | |
| !! | ACTGATGTGTGGCTCTGACA+TGG | + | chr2_3:8867064-8867083 | Msa0276590:intron | 50.0% |
| !! | TGGTCACTGACTCTAACACG+AGG | + | chr2_3:8867382-8867401 | Msa0276590:CDS | 50.0% |
| CTCTTGCCAGCTGGCCAAAA+AGG | - | chr2_3:8866458-8866477 | None:intergenic | 55.0% | |
| TTTGGCCAGCTGGCAAGAGA+AGG | + | chr2_3:8866459-8866478 | Msa0276590:CDS | 55.0% | |
| ! | GAAAGGGCTTGCTTTGCTGC+AGG | - | chr2_3:8867464-8867483 | None:intergenic | 55.0% |
| TGGCAGAAGACTCACTCGCA+TGG | + | chr2_3:8867544-8867563 | Msa0276590:three_prime_UTR | 55.0% | |
| CTCTTGCCAGCTGGCCAAAA+AGG | - | chr2_3:8866458-8866477 | None:intergenic | 55.0% | |
| TTTGGCCAGCTGGCAAGAGA+AGG | + | chr2_3:8866459-8866478 | Msa0276590:CDS | 55.0% | |
| ! | GAAAGGGCTTGCTTTGCTGC+AGG | - | chr2_3:8867464-8867483 | None:intergenic | 55.0% |
| TGGCAGAAGACTCACTCGCA+TGG | + | chr2_3:8867544-8867563 | Msa0276590:three_prime_UTR | 55.0% | |
| GAGCTCCTTCTCTTGCCAGC+TGG | - | chr2_3:8866467-8866486 | None:intergenic | 60.0% | |
| GAGCTCCTTCTCTTGCCAGC+TGG | - | chr2_3:8866467-8866486 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 8866377 | 8867641 | 8866377 | ID=Msa0276590;Name=Msa0276590 |
| chr2_3 | mRNA | 8866377 | 8867641 | 8866377 | ID=Msa0276590-mRNA-1;Parent=Msa0276590;Name=Msa0276590-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|1|0.83|1|1|1|6|186|173 |
| chr2_3 | exon | 8866377 | 8866530 | 8866377 | ID=Msa0276590-mRNA-1:exon:3980;Parent=Msa0276590-mRNA-1 |
| chr2_3 | exon | 8866632 | 8866726 | 8866632 | ID=Msa0276590-mRNA-1:exon:3981;Parent=Msa0276590-mRNA-1 |
| chr2_3 | exon | 8866840 | 8866957 | 8866840 | ID=Msa0276590-mRNA-1:exon:3982;Parent=Msa0276590-mRNA-1 |
| chr2_3 | exon | 8867101 | 8867117 | 8867101 | ID=Msa0276590-mRNA-1:exon:3983;Parent=Msa0276590-mRNA-1 |
| chr2_3 | exon | 8867204 | 8867266 | 8867204 | ID=Msa0276590-mRNA-1:exon:3984;Parent=Msa0276590-mRNA-1 |
| chr2_3 | exon | 8867381 | 8867641 | 8867381 | ID=Msa0276590-mRNA-1:exon:3985;Parent=Msa0276590-mRNA-1 |
| chr2_3 | CDS | 8866377 | 8866530 | 8866377 | ID=Msa0276590-mRNA-1:cds;Parent=Msa0276590-mRNA-1 |
| chr2_3 | CDS | 8866632 | 8866726 | 8866632 | ID=Msa0276590-mRNA-1:cds;Parent=Msa0276590-mRNA-1 |
| chr2_3 | CDS | 8866840 | 8866957 | 8866840 | ID=Msa0276590-mRNA-1:cds;Parent=Msa0276590-mRNA-1 |
| chr2_3 | CDS | 8867101 | 8867117 | 8867101 | ID=Msa0276590-mRNA-1:cds;Parent=Msa0276590-mRNA-1 |
| chr2_3 | CDS | 8867204 | 8867266 | 8867204 | ID=Msa0276590-mRNA-1:cds;Parent=Msa0276590-mRNA-1 |
| chr2_3 | CDS | 8867381 | 8867455 | 8867381 | ID=Msa0276590-mRNA-1:cds;Parent=Msa0276590-mRNA-1 |
| chr2_3 | three_prime_UTR | 8867456 | 8867641 | 8867456 | ID=Msa0276590-mRNA-1:three_prime_utr;Parent=Msa0276590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
