AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1268420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1268420 MtrunA17_Chr5g0405701 96.260 508 19 0 1 508 692 1199 0.0 1003
Msa1268420 MtrunA17_Chr8g0371601 67.978 534 125 7 3 509 656 1170 0.0 696
Msa1268420 MtrunA17_Chr8g0377481 34.722 144 62 2 356 493 838 955 1.73e-18 89.4
Msa1268420 MtrunA17_Chr3g0122391 34.932 146 64 2 353 493 893 1012 2.79e-17 85.5
Msa1268420 MtrunA17_Chr1g0197591 38.129 139 63 5 354 492 921 1036 1.32e-16 83.2
Msa1268420 MtrunA17_Chr1g0194731 32.450 151 78 4 343 492 312 439 7.59e-16 79.7
Msa1268420 MtrunA17_Chr8g0392301 31.953 169 74 4 356 509 858 1000 9.36e-16 80.5
Msa1268420 MtrunA17_Chr5g0447641 30.994 171 68 4 347 493 1056 1200 9.51e-14 74.3
Msa1268420 MtrunA17_Chr8g0343551 52.381 63 26 2 430 492 15 73 2.52e-13 65.9
Msa1268420 MtrunA17_Chr1g0150511 30.189 159 58 3 361 494 870 1000 2.24e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1268420 AT2G17820.1 58.065 527 188 8 4 508 684 1199 0.0 585
Msa1268420 AT2G47430.1 27.076 554 292 18 10 493 597 1108 1.37e-34 139
Msa1268420 AT2G01830.2 33.540 161 75 2 353 507 939 1073 2.51e-17 85.9
Msa1268420 AT2G01830.5 33.540 161 75 2 353 507 928 1062 2.69e-17 85.9
Msa1268420 AT2G01830.1 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa1268420 AT2G01830.4 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa1268420 AT2G01830.6 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa1268420 AT2G01830.3 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa1268420 AT5G35750.1 28.313 166 75 2 360 507 1036 1175 3.04e-15 79.3
Msa1268420 AT1G27320.1 32.051 156 62 2 356 493 887 1016 4.19e-15 79.0
Msa1268420 AT3G04580.2 33.553 152 72 4 351 501 634 757 1.01e-13 74.3
Msa1268420 AT3G04580.1 33.553 152 72 4 351 501 634 757 1.01e-13 74.3

Find 92 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGACGAAGCTCCGTCTTTA+TGG 0.118108 8_3:-1412806 None:intergenic
TTAAATCCTTCAAGATTTAT+TGG 0.172560 8_3:-1412613 None:intergenic
TTACAACTATGTACATTTCT+AGG 0.187196 8_3:-1414071 None:intergenic
TCATCGGTTAACTTTAAAAT+TGG 0.200671 8_3:-1413036 None:intergenic
AACTTCCTTCACAAGTATTT+TGG 0.220256 8_3:+1412739 Msa1268420:CDS
GTTGCAACCCTTTGAATTAC+TGG 0.261968 8_3:-1413237 None:intergenic
GCCAATTGACTTCAAGCTTA+TGG 0.265808 8_3:+1414015 Msa1268420:CDS
GCTTGCACTACAAGGCAATA+TGG 0.271450 8_3:+1412444 Msa1268420:CDS
TTCTATTAGGTTTATAGTTA+TGG 0.274459 8_3:-1414213 None:intergenic
TATATACATTTATTTCTATT+AGG 0.278525 8_3:-1414226 None:intergenic
TCAATATGATTTGATCCTAA+TGG 0.301867 8_3:+1413419 Msa1268420:CDS
GCCTCATATCCATCCATCTT+TGG 0.303088 8_3:-1413863 None:intergenic
CATGCCAACCTTAAGGCATT+TGG 0.328149 8_3:-1413975 None:intergenic
AGTGGATGCTCTTAATTATA+TGG 0.332374 8_3:+1413317 Msa1268420:CDS
TTGCAACACAAGCTTATGAT+AGG 0.334949 8_3:+1413139 Msa1268420:CDS
TTGACTTAAGCACAGATATA+TGG 0.337006 8_3:+1412704 Msa1268420:CDS
AGAAATCACTTGAGGGGTTA+AGG 0.349957 8_3:+1413193 Msa1268420:CDS
GCTTACAGTCTAGTAGTTGA+TGG 0.352312 8_3:-1411560 None:intergenic
AGAAATCAAGGTTACCAAAA+AGG 0.359146 8_3:+1412184 Msa1268420:CDS
TATGTACATTTCTAGGTTGT+TGG 0.363384 8_3:-1414064 None:intergenic
AACCGATGAAAATGAACATT+TGG 0.389298 8_3:+1413050 Msa1268420:CDS
ACCATAAGCTTGAAGTCAAT+TGG 0.402673 8_3:-1414016 None:intergenic
GTACAAGATTCTTCTTCCCT+TGG 0.408031 8_3:-1413084 None:intergenic
ATGAGGCAACAAAAGCAATA+AGG 0.417051 8_3:+1413879 Msa1268420:CDS
AACACAGAATCCCATTTGCT+TGG 0.417471 8_3:-1411515 None:intergenic
GAGATAACAAAGTGATACTT+TGG 0.425255 8_3:+1411356 Msa1268420:CDS
TTTGACAGACAATGGCTTAG+TGG 0.429155 8_3:+1412283 Msa1268420:CDS
AGGCATGGAGGTACTGGTCT+AGG 0.437294 8_3:+1411857 Msa1268420:intron
TATTTCAGGCATGGAGGTAC+TGG 0.439009 8_3:+1411851 Msa1268420:intron
TTTGATCCTAATGGATTGTC+AGG 0.439291 8_3:+1413428 Msa1268420:CDS
CACTATCCAATAAATCTTGA+AGG 0.440106 8_3:+1412607 Msa1268420:CDS
TCTTTGCATCGTTAGGAACT+TGG 0.444026 8_3:+1411880 Msa1268420:CDS
TAGGTATCGATCCAAGCAAA+TGG 0.444365 8_3:+1411504 Msa1268420:intron
TTAGGATCAAATCATATTGA+TGG 0.448278 8_3:-1413416 None:intergenic
TCGGAAAGGACACTTACTAA+TGG 0.460922 8_3:+1412825 Msa1268420:CDS
AAGCATCCATGCCAACCTTA+AGG 0.465093 8_3:-1413982 None:intergenic
TGGTTTAGTGAGTGAGAGAA+TGG 0.469497 8_3:-1414044 None:intergenic
AGAAATAAATGTATATAGAA+AGG 0.471186 8_3:+1414232 Msa1268420:three_prime_UTR
CTTGCACTACAAGGCAATAT+GGG 0.472560 8_3:+1412445 Msa1268420:CDS
ATATGATTGCACTTTGTTGA+AGG 0.476921 8_3:+1414173 Msa1268420:three_prime_UTR
TTTAGCTTTGTTGTCTTCAG+AGG 0.483395 8_3:-1413106 None:intergenic
AGGAAATCAGAGGAAGGAAC+AGG 0.483804 8_3:+1413899 Msa1268420:CDS
CAGGTATTGCTTGCACTACA+AGG 0.486574 8_3:+1412436 Msa1268420:intron
TGATGAAGCCAAATGCCTTA+AGG 0.487966 8_3:+1413967 Msa1268420:CDS
GCCAAAGATGGATGGATATG+AGG 0.491952 8_3:+1413862 Msa1268420:CDS
AGTTCACTAGTATCAGTAAA+CGG 0.492218 8_3:+1414123 Msa1268420:three_prime_UTR
AATGATAAGAAATCACTTGA+GGG 0.496123 8_3:+1413186 Msa1268420:CDS
CCATAAAGACGGAGCTTCGT+CGG 0.496665 8_3:+1412806 Msa1268420:CDS
GTTGTTGTTGCTGTAGGTGA+TGG 0.497897 8_3:+1413285 Msa1268420:CDS
TTCATACCTGACAATCCATT+AGG 0.501681 8_3:-1413434 None:intergenic
TAAGATGGGTGGAGAAATCA+AGG 0.502216 8_3:+1412172 Msa1268420:CDS
GATACTTTGGTTTGAAGTTG+AGG 0.505428 8_3:+1411369 Msa1268420:CDS
GTCTAGGTCTTTGCATCGTT+AGG 0.507867 8_3:+1411873 Msa1268420:CDS
TACTAAGCATCAAAGATATG+AGG 0.509714 8_3:+1412644 Msa1268420:CDS
CTCTTCCAAAATACTTGTGA+AGG 0.511302 8_3:-1412744 None:intergenic
GCTTTAAATTTGACAGACAA+TGG 0.517382 8_3:+1412275 Msa1268420:CDS
TGATACTAGTGAACTCAGTA+AGG 0.519583 8_3:-1414115 None:intergenic
AAGATACACCAGTAATTCAA+AGG 0.521392 8_3:+1413229 Msa1268420:CDS
TTTGTCATCGTTGTTGACAT+TGG 0.524996 8_3:+1412676 Msa1268420:CDS
GAAGTTGAGGACACAGGCTG+TGG 0.528521 8_3:+1411382 Msa1268420:CDS
TTTGCTTCTTAGTGCACCAA+TGG 0.532448 8_3:+1412235 Msa1268420:CDS
AAGACGGAGCTTCGTCGGAA+AGG 0.533943 8_3:+1412811 Msa1268420:CDS
TGTGCTGTTAGAGCAACAAT+TGG 0.534132 8_3:-1413932 None:intergenic
TGGATGGCAGGTTAATAAGA+TGG 0.537101 8_3:+1412157 Msa1268420:intron
GGAGCTGTTGTTGTTGCTGT+AGG 0.539267 8_3:+1413279 Msa1268420:CDS
GGATGGCAGGTTAATAAGAT+GGG 0.539780 8_3:+1412158 Msa1268420:intron
AGGTATCGATCCAAGCAAAT+GGG 0.547486 8_3:+1411505 Msa1268420:intron
TGTTGCTCTGTGACATCCAT+TGG 0.548514 8_3:-1412251 None:intergenic
AATTAGATGCCAAAGATGGA+TGG 0.551523 8_3:+1413854 Msa1268420:intron
GGAAAATTAGATGCCAAAGA+TGG 0.561731 8_3:+1413850 Msa1268420:intron
TAGGGTGACAAGGTCAAGAA+AGG 0.566276 8_3:+1413158 Msa1268420:CDS
GCACAATGGAAGCATCTGAA+TGG 0.570506 8_3:+1412509 Msa1268420:CDS
ATGGAAGCATCTGAATGGAA+TGG 0.570666 8_3:+1412514 Msa1268420:CDS
TGCAACACAAGCTTATGATA+GGG 0.572109 8_3:+1413140 Msa1268420:CDS
AGATACACCAGTAATTCAAA+GGG 0.575176 8_3:+1413230 Msa1268420:CDS
GAATGATAAGAAATCACTTG+AGG 0.584649 8_3:+1413185 Msa1268420:CDS
GAAGCCAAATGCCTTAAGGT+TGG 0.589210 8_3:+1413971 Msa1268420:CDS
TGGCAGGTTAATAAGATGGG+TGG 0.597564 8_3:+1412161 Msa1268420:intron
CACATCAAATACCATAAAGA+CGG 0.600188 8_3:+1412795 Msa1268420:CDS
ATTTGGAAGAAAATAATCCA+AGG 0.600592 8_3:+1413067 Msa1268420:CDS
TGGTTTGAAGTTGAGGACAC+AGG 0.609745 8_3:+1411376 Msa1268420:CDS
TAGAAGAGAGTCTCTCCAGA+AGG 0.615474 8_3:+1413356 Msa1268420:CDS
CAAATGCCTTAAGGTTGGCA+TGG 0.617547 8_3:+1413976 Msa1268420:CDS
AAAAGCAATAAGGAAATCAG+AGG 0.621819 8_3:+1413889 Msa1268420:CDS
GCAATAAGGAAATCAGAGGA+AGG 0.623445 8_3:+1413893 Msa1268420:CDS
TTTGGAAGAAAATAATCCAA+GGG 0.626055 8_3:+1413068 Msa1268420:CDS
TTGGAAGAGCGAAATTTGTG+TGG 0.640386 8_3:+1412758 Msa1268420:CDS
TTTACTTATTTCAGGCATGG+AGG 0.660130 8_3:+1411845 Msa1268420:intron
ATGATAAGAAATCACTTGAG+GGG 0.670799 8_3:+1413187 Msa1268420:CDS
GTAGAATAATAACATCGAAG+TGG 0.676676 8_3:+1412467 Msa1268420:CDS
AGGTGATGGACAACAAGCAG+TGG 0.694466 8_3:+1413299 Msa1268420:CDS
AAGCTTATGATAGGGTGACA+AGG 0.699339 8_3:+1413148 Msa1268420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATACATTTATTTCTATT+AGG - chr8_3:1414229-1414248 None:intergenic 10.0%
!!! TTCATGAAATGTAAATTTTA+AGG - chr8_3:1411414-1411433 None:intergenic 15.0%
!!! ACTTATTTTATTTTGACAAA+AGG - chr8_3:1411443-1411462 None:intergenic 15.0%
!! AGAAATAAATGTATATAGAA+AGG + chr8_3:1414232-1414251 Msa1268420:three_prime_UTR 15.0%
!!! AGATCATACAATTGAAATTT+TGG + chr8_3:1411675-1411694 Msa1268420:intron 20.0%
!!! ATTTTCTGAAGAAGAAAAAA+AGG + chr8_3:1411968-1411987 Msa1268420:intron 20.0%
!! AAAAAAATTCACATTTCCTT+TGG + chr8_3:1412008-1412027 Msa1268420:intron 20.0%
!!! TAAGTTCCTTTTATTTTTGT+TGG + chr8_3:1412137-1412156 Msa1268420:intron 20.0%
!! GAAATTTAAGGATAACAAAT+AGG + chr8_3:1412390-1412409 Msa1268420:intron 20.0%
!! TTAAATCCTTCAAGATTTAT+TGG - chr8_3:1412616-1412635 None:intergenic 20.0%
!!! AGCAAAAATGATTCATATTT+TGG + chr8_3:1412867-1412886 Msa1268420:CDS 20.0%
!! AACAATAATGCTTGAAAAAA+TGG + chr8_3:1413257-1413276 Msa1268420:CDS 20.0%
!! ACAATAATGCTTGAAAAAAT+GGG + chr8_3:1413258-1413277 Msa1268420:CDS 20.0%
!! TTTGGATAAATAGTTTAATC+AGG + chr8_3:1413549-1413568 Msa1268420:intron 20.0%
!! ATATAAAATTACACTTGTGT+TGG + chr8_3:1413597-1413616 Msa1268420:intron 20.0%
!! ATATCTAATAAGTGAATATC+AGG + chr8_3:1413796-1413815 Msa1268420:intron 20.0%
!! TTCTATTAGGTTTATAGTTA+TGG - chr8_3:1414216-1414235 None:intergenic 20.0%
! AAACAAATGTGATTTATTCG+TGG - chr8_3:1411466-1411485 None:intergenic 25.0%
! TTTGTTTATTTCCTATGTTG+TGG + chr8_3:1411479-1411498 Msa1268420:intron 25.0%
! ATGTATATAGTCAATGATCT+CGG + chr8_3:1411642-1411661 Msa1268420:intron 25.0%
! GTAAGAAAAAACAAACATTG+AGG - chr8_3:1411794-1411813 None:intergenic 25.0%
!!! TTCCTTTTATTTTTGTTGGA+TGG + chr8_3:1412141-1412160 Msa1268420:intron 25.0%
! CTAAAAGCAAGAGAAATTTA+AGG + chr8_3:1412378-1412397 Msa1268420:intron 25.0%
!!! ATCATTTTTGCTTTGTATAG+AGG - chr8_3:1412859-1412878 None:intergenic 25.0%
! CAAAAGAAAAACATGAAAGA+GGG + chr8_3:1412922-1412941 Msa1268420:CDS 25.0%
!!! TCATCGGTTAACTTTAAAAT+TGG - chr8_3:1413039-1413058 None:intergenic 25.0%
!! TTCCAAATGTTCATTTTCAT+CGG - chr8_3:1413055-1413074 None:intergenic 25.0%
! ATTTGGAAGAAAATAATCCA+AGG + chr8_3:1413067-1413086 Msa1268420:CDS 25.0%
! TTTGGAAGAAAATAATCCAA+GGG + chr8_3:1413068-1413087 Msa1268420:CDS 25.0%
! AATGATAAGAAATCACTTGA+GGG + chr8_3:1413186-1413205 Msa1268420:CDS 25.0%
! TTAGGATCAAATCATATTGA+TGG - chr8_3:1413419-1413438 None:intergenic 25.0%
! TCAATATGATTTGATCCTAA+TGG + chr8_3:1413419-1413438 Msa1268420:CDS 25.0%
!! CAGTCAAATTATTTTCATAC+AGG + chr8_3:1413730-1413749 Msa1268420:intron 25.0%
! GATATAAAAAAGCTACCTAT+TGG - chr8_3:1413781-1413800 None:intergenic 25.0%
! TTACAACTATGTACATTTCT+AGG - chr8_3:1414074-1414093 None:intergenic 25.0%
GAGATAACAAAGTGATACTT+TGG + chr8_3:1411356-1411375 Msa1268420:CDS 30.0%
TATTTCCTATGTTGTGGTAT+AGG + chr8_3:1411485-1411504 Msa1268420:intron 30.0%
CTGAATCCTTTACTTATTTC+AGG + chr8_3:1411837-1411856 Msa1268420:intron 30.0%
! TTTTAGACCTAGTTTACCAA+AGG - chr8_3:1412027-1412046 None:intergenic 30.0%
!!! TGATTGTGTGATTGTTTTTG+AGG + chr8_3:1412099-1412118 Msa1268420:intron 30.0%
TGCCATCCAACAAAAATAAA+AGG - chr8_3:1412146-1412165 None:intergenic 30.0%
!!! TTTTATTTTTGTTGGATGGC+AGG + chr8_3:1412145-1412164 Msa1268420:intron 30.0%
AGAAATCAAGGTTACCAAAA+AGG + chr8_3:1412184-1412203 Msa1268420:CDS 30.0%
! GCTTTAAATTTGACAGACAA+TGG + chr8_3:1412275-1412294 Msa1268420:CDS 30.0%
TAAATACTAAGTGTGAATGC+AGG + chr8_3:1412417-1412436 Msa1268420:intron 30.0%
GTAGAATAATAACATCGAAG+TGG + chr8_3:1412467-1412486 Msa1268420:CDS 30.0%
!! ATGGACTAACACAAATTTTG+AGG + chr8_3:1412533-1412552 Msa1268420:CDS 30.0%
! TGGACTAACACAAATTTTGA+GGG + chr8_3:1412534-1412553 Msa1268420:CDS 30.0%
CACTATCCAATAAATCTTGA+AGG + chr8_3:1412607-1412626 Msa1268420:CDS 30.0%
TACTAAGCATCAAAGATATG+AGG + chr8_3:1412644-1412663 Msa1268420:CDS 30.0%
TCAACAACGATGACAAAAAT+TGG - chr8_3:1412673-1412692 None:intergenic 30.0%
TTGACTTAAGCACAGATATA+TGG + chr8_3:1412704-1412723 Msa1268420:CDS 30.0%
! AACTTCCTTCACAAGTATTT+TGG + chr8_3:1412739-1412758 Msa1268420:CDS 30.0%
CACATCAAATACCATAAAGA+CGG + chr8_3:1412795-1412814 Msa1268420:CDS 30.0%
GCAAAAGAAAAACATGAAAG+AGG + chr8_3:1412921-1412940 Msa1268420:CDS 30.0%
AACCGATGAAAATGAACATT+TGG + chr8_3:1413050-1413069 Msa1268420:CDS 30.0%
GAATGATAAGAAATCACTTG+AGG + chr8_3:1413185-1413204 Msa1268420:CDS 30.0%
ATGATAAGAAATCACTTGAG+GGG + chr8_3:1413187-1413206 Msa1268420:CDS 30.0%
AAGATACACCAGTAATTCAA+AGG + chr8_3:1413229-1413248 Msa1268420:CDS 30.0%
AGATACACCAGTAATTCAAA+GGG + chr8_3:1413230-1413249 Msa1268420:CDS 30.0%
AGTGGATGCTCTTAATTATA+TGG + chr8_3:1413317-1413336 Msa1268420:CDS 30.0%
!! ATCTTGTATTTTTGTCCTTC+TGG - chr8_3:1413374-1413393 None:intergenic 30.0%
TGAACCAGAATAACAGTATT+AGG + chr8_3:1413453-1413472 Msa1268420:intron 30.0%
AAGTCCTAATACTGTTATTC+TGG - chr8_3:1413460-1413479 None:intergenic 30.0%
CTTGTGAAATTGTTTGACAT+AGG + chr8_3:1413521-1413540 Msa1268420:intron 30.0%
! TTATCAAGTATTGCTCCAAT+AGG + chr8_3:1413763-1413782 Msa1268420:intron 30.0%
TAATGCTTTATCTGTGTTTG+TGG + chr8_3:1413829-1413848 Msa1268420:intron 30.0%
AAAAGCAATAAGGAAATCAG+AGG + chr8_3:1413889-1413908 Msa1268420:CDS 30.0%
! TATGTACATTTCTAGGTTGT+TGG - chr8_3:1414067-1414086 None:intergenic 30.0%
AGTTCACTAGTATCAGTAAA+CGG + chr8_3:1414123-1414142 Msa1268420:three_prime_UTR 30.0%
ATATGATTGCACTTTGTTGA+AGG + chr8_3:1414173-1414192 Msa1268420:three_prime_UTR 30.0%
!! GATACTTTGGTTTGAAGTTG+AGG + chr8_3:1411369-1411388 Msa1268420:CDS 35.0%
ATTTCTACAGTCATTGCAGT+CGG - chr8_3:1411764-1411783 None:intergenic 35.0%
TCCTTTACTTATTTCAGGCA+TGG + chr8_3:1411842-1411861 Msa1268420:intron 35.0%
TCCATGCCTGAAATAAGTAA+AGG - chr8_3:1411846-1411865 None:intergenic 35.0%
TTTACTTATTTCAGGCATGG+AGG + chr8_3:1411845-1411864 Msa1268420:intron 35.0%
CACATTTCCTTTGGTAAACT+AGG + chr8_3:1412017-1412036 Msa1268420:intron 35.0%
AATCAAGGTTACCAAAAAGG+AGG + chr8_3:1412187-1412206 Msa1268420:CDS 35.0%
ATCAAGGTTACCAAAAAGGA+GGG + chr8_3:1412188-1412207 Msa1268420:CDS 35.0%
TCGAAGTGGTTAACCAAAAA+AGG + chr8_3:1412481-1412500 Msa1268420:CDS 35.0%
CGAAGTGGTTAACCAAAAAA+GGG + chr8_3:1412482-1412501 Msa1268420:CDS 35.0%
GAAGTGGTTAACCAAAAAAG+GGG + chr8_3:1412483-1412502 Msa1268420:CDS 35.0%
TTTGTCATCGTTGTTGACAT+TGG + chr8_3:1412676-1412695 Msa1268420:CDS 35.0%
CTCTTCCAAAATACTTGTGA+AGG - chr8_3:1412747-1412766 None:intergenic 35.0%
!! TTTAGCTTTGTTGTCTTCAG+AGG - chr8_3:1413109-1413128 None:intergenic 35.0%
TTGCAACACAAGCTTATGAT+AGG + chr8_3:1413139-1413158 Msa1268420:CDS 35.0%
TGCAACACAAGCTTATGATA+GGG + chr8_3:1413140-1413159 Msa1268420:CDS 35.0%
!! TTTGATCCTAATGGATTGTC+AGG + chr8_3:1413428-1413447 Msa1268420:CDS 35.0%
TTCATACCTGACAATCCATT+AGG - chr8_3:1413437-1413456 None:intergenic 35.0%
ACGCATTTGAGCTTATTTAC+TGG + chr8_3:1413490-1413509 Msa1268420:intron 35.0%
TGTTTGACATAGGTCATGTT+TGG + chr8_3:1413531-1413550 Msa1268420:intron 35.0%
! AAAATTACACTTGTGTTGGC+CGG + chr8_3:1413601-1413620 Msa1268420:intron 35.0%
GGAAAATTAGATGCCAAAGA+TGG + chr8_3:1413850-1413869 Msa1268420:intron 35.0%
AATTAGATGCCAAAGATGGA+TGG + chr8_3:1413854-1413873 Msa1268420:intron 35.0%
ATGAGGCAACAAAAGCAATA+AGG + chr8_3:1413879-1413898 Msa1268420:CDS 35.0%
ACCATAAGCTTGAAGTCAAT+TGG - chr8_3:1414019-1414038 None:intergenic 35.0%
TGATACTAGTGAACTCAGTA+AGG - chr8_3:1414118-1414137 None:intergenic 35.0%
CGATACCTATACCACAACAT+AGG - chr8_3:1411493-1411512 None:intergenic 40.0%
!! TAGGTATCGATCCAAGCAAA+TGG + chr8_3:1411504-1411523 Msa1268420:intron 40.0%
!! AGGTATCGATCCAAGCAAAT+GGG + chr8_3:1411505-1411524 Msa1268420:intron 40.0%
AACACAGAATCCCATTTGCT+TGG - chr8_3:1411518-1411537 None:intergenic 40.0%
GCTTACAGTCTAGTAGTTGA+TGG - chr8_3:1411563-1411582 None:intergenic 40.0%
TCTTTGCATCGTTAGGAACT+TGG + chr8_3:1411880-1411899 Msa1268420:CDS 40.0%
TTGGACTGTAGGATCAACAT+CGG - chr8_3:1412066-1412085 None:intergenic 40.0%
GTTGATCCTACAGTCCAAAT+CGG + chr8_3:1412068-1412087 Msa1268420:intron 40.0%
TTGATCCTACAGTCCAAATC+GGG + chr8_3:1412069-1412088 Msa1268420:intron 40.0%
TGGATGGCAGGTTAATAAGA+TGG + chr8_3:1412157-1412176 Msa1268420:intron 40.0%
GGATGGCAGGTTAATAAGAT+GGG + chr8_3:1412158-1412177 Msa1268420:intron 40.0%
TAAGATGGGTGGAGAAATCA+AGG + chr8_3:1412172-1412191 Msa1268420:CDS 40.0%
TTTGCTTCTTAGTGCACCAA+TGG + chr8_3:1412235-1412254 Msa1268420:CDS 40.0%
TTTGACAGACAATGGCTTAG+TGG + chr8_3:1412283-1412302 Msa1268420:CDS 40.0%
CTTGCACTACAAGGCAATAT+GGG + chr8_3:1412445-1412464 Msa1268420:CDS 40.0%
!! ATGGAAGCATCTGAATGGAA+TGG + chr8_3:1412514-1412533 Msa1268420:CDS 40.0%
TTGGAAGAGCGAAATTTGTG+TGG + chr8_3:1412758-1412777 Msa1268420:CDS 40.0%
TCGGAAAGGACACTTACTAA+TGG + chr8_3:1412825-1412844 Msa1268420:CDS 40.0%
GTACAAGATTCTTCTTCCCT+TGG - chr8_3:1413087-1413106 None:intergenic 40.0%
AAGCTTATGATAGGGTGACA+AGG + chr8_3:1413148-1413167 Msa1268420:CDS 40.0%
AGAAATCACTTGAGGGGTTA+AGG + chr8_3:1413193-1413212 Msa1268420:CDS 40.0%
GTTGCAACCCTTTGAATTAC+TGG - chr8_3:1413240-1413259 None:intergenic 40.0%
! CTTTAGAGAAGCACACTTCA+AGG - chr8_3:1413645-1413664 None:intergenic 40.0%
CTTGAAGTGTGCTTCTCTAA+AGG + chr8_3:1413643-1413662 Msa1268420:intron 40.0%
CTAAACTAGCCCACTGAAAT+AGG - chr8_3:1413693-1413712 None:intergenic 40.0%
GCAATAAGGAAATCAGAGGA+AGG + chr8_3:1413893-1413912 Msa1268420:CDS 40.0%
! TGTGCTGTTAGAGCAACAAT+TGG - chr8_3:1413935-1413954 None:intergenic 40.0%
TGATGAAGCCAAATGCCTTA+AGG + chr8_3:1413967-1413986 Msa1268420:CDS 40.0%
! GCCAATTGACTTCAAGCTTA+TGG + chr8_3:1414015-1414034 Msa1268420:CDS 40.0%
TGGTTTAGTGAGTGAGAGAA+TGG - chr8_3:1414047-1414066 None:intergenic 40.0%
! TGGTTTGAAGTTGAGGACAC+AGG + chr8_3:1411376-1411395 Msa1268420:CDS 45.0%
AGTCGGCTGATCTAAATCGT+TGG - chr8_3:1411747-1411766 None:intergenic 45.0%
! TATTTCAGGCATGGAGGTAC+TGG + chr8_3:1411851-1411870 Msa1268420:intron 45.0%
GTCTAGGTCTTTGCATCGTT+AGG + chr8_3:1411873-1411892 Msa1268420:CDS 45.0%
TGGACTGTAGGATCAACATC+GGG - chr8_3:1412065-1412084 None:intergenic 45.0%
TGATCCTACAGTCCAAATCG+GGG + chr8_3:1412070-1412089 Msa1268420:intron 45.0%
CAATCACACATTCCCCGATT+TGG - chr8_3:1412085-1412104 None:intergenic 45.0%
TGGCAGGTTAATAAGATGGG+TGG + chr8_3:1412161-1412180 Msa1268420:intron 45.0%
GTTACCAAAAAGGAGGGTCA+GGG + chr8_3:1412194-1412213 Msa1268420:CDS 45.0%
TGTTGCTCTGTGACATCCAT+TGG - chr8_3:1412254-1412273 None:intergenic 45.0%
! CAGGTATTGCTTGCACTACA+AGG + chr8_3:1412436-1412455 Msa1268420:intron 45.0%
GCTTGCACTACAAGGCAATA+TGG + chr8_3:1412444-1412463 Msa1268420:CDS 45.0%
!!! CATTGTGCACACCCCTTTTT+TGG - chr8_3:1412497-1412516 None:intergenic 45.0%
! CAAAAAAGGGGTGTGCACAA+TGG + chr8_3:1412495-1412514 Msa1268420:CDS 45.0%
!! GCACAATGGAAGCATCTGAA+TGG + chr8_3:1412509-1412528 Msa1268420:CDS 45.0%
TAGGGTGACAAGGTCAAGAA+AGG + chr8_3:1413158-1413177 Msa1268420:CDS 45.0%
! GTTGTTGTTGCTGTAGGTGA+TGG + chr8_3:1413285-1413304 Msa1268420:CDS 45.0%
TAGAAGAGAGTCTCTCCAGA+AGG + chr8_3:1413356-1413375 Msa1268420:CDS 45.0%
! TGTGCTTCTCTAAAGGTCTC+AGG + chr8_3:1413650-1413669 Msa1268420:intron 45.0%
GCCAAAGATGGATGGATATG+AGG + chr8_3:1413862-1413881 Msa1268420:CDS 45.0%
GCCTCATATCCATCCATCTT+TGG - chr8_3:1413866-1413885 None:intergenic 45.0%
AGGAAATCAGAGGAAGGAAC+AGG + chr8_3:1413899-1413918 Msa1268420:CDS 45.0%
GAAGCCAAATGCCTTAAGGT+TGG + chr8_3:1413971-1413990 Msa1268420:CDS 45.0%
! CATGCCAACCTTAAGGCATT+TGG - chr8_3:1413978-1413997 None:intergenic 45.0%
CAAATGCCTTAAGGTTGGCA+TGG + chr8_3:1413976-1413995 Msa1268420:CDS 45.0%
AAGCATCCATGCCAACCTTA+AGG - chr8_3:1413985-1414004 None:intergenic 45.0%
ACTGTAGGATCAACATCGGG+CGG - chr8_3:1412062-1412081 None:intergenic 50.0%
!! CATTCCCCGATTTGGACTGT+AGG - chr8_3:1412077-1412096 None:intergenic 50.0%
GGTTACCAAAAAGGAGGGTC+AGG + chr8_3:1412193-1412212 Msa1268420:CDS 50.0%
! TGTTCCCTGACCCTCCTTTT+TGG - chr8_3:1412201-1412220 None:intergenic 50.0%
CCATAAAGACGGAGCTTCGT+CGG + chr8_3:1412806-1412825 Msa1268420:CDS 50.0%
! GGAGCTGTTGTTGTTGCTGT+AGG + chr8_3:1413279-1413298 Msa1268420:CDS 50.0%
!! AGGTGATGGACAACAAGCAG+TGG + chr8_3:1413299-1413318 Msa1268420:CDS 50.0%
! ATTACACTTGTGTTGGCCGG+TGG + chr8_3:1413604-1413623 Msa1268420:intron 50.0%
TAGCCCACTGAAATAGGCAC+CGG - chr8_3:1413687-1413706 None:intergenic 50.0%
GAAGTTGAGGACACAGGCTG+TGG + chr8_3:1411382-1411401 Msa1268420:CDS 55.0%
!! AGGCATGGAGGTACTGGTCT+AGG + chr8_3:1411857-1411876 Msa1268420:intron 55.0%
CCGACGAAGCTCCGTCTTTA+TGG - chr8_3:1412809-1412828 None:intergenic 55.0%
AAGACGGAGCTTCGTCGGAA+AGG + chr8_3:1412811-1412830 Msa1268420:CDS 55.0%
GTCTCTCAAGCCAACACCAC+CGG - chr8_3:1413623-1413642 None:intergenic 55.0%
GTCTCAGGCTCAATTCTCCC+CGG + chr8_3:1413665-1413684 Msa1268420:intron 55.0%
TCCCCGGTGCCTATTTCAGT+GGG + chr8_3:1413681-1413700 Msa1268420:intron 55.0%
AGCCCACTGAAATAGGCACC+GGG - chr8_3:1413686-1413705 None:intergenic 55.0%
! CTTGTGTTGGCCGGTGGTGT+TGG + chr8_3:1413610-1413629 Msa1268420:intron 60.0%
CTCCCCGGTGCCTATTTCAG+TGG + chr8_3:1413680-1413699 Msa1268420:intron 60.0%
! GCCCACTGAAATAGGCACCG+GGG - chr8_3:1413685-1413704 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 1411352 1414270 1411352 ID=Msa1268420;Name=Msa1268420
chr8_3 mRNA 1411352 1414270 1411352 ID=Msa1268420-mRNA-1;Parent=Msa1268420;Name=Msa1268420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.4|0.16|0.5|1|1|6|195|509
chr8_3 exon 1411352 1411403 1411352 ID=Msa1268420-mRNA-1:exon:359;Parent=Msa1268420-mRNA-1
chr8_3 exon 1411507 1411576 1411507 ID=Msa1268420-mRNA-1:exon:360;Parent=Msa1268420-mRNA-1
chr8_3 exon 1411859 1411901 1411859 ID=Msa1268420-mRNA-1:exon:361;Parent=Msa1268420-mRNA-1
chr8_3 exon 1412167 1412304 1412167 ID=Msa1268420-mRNA-1:exon:362;Parent=Msa1268420-mRNA-1
chr8_3 exon 1412439 1413449 1412439 ID=Msa1268420-mRNA-1:exon:363;Parent=Msa1268420-mRNA-1
chr8_3 exon 1413860 1414270 1413860 ID=Msa1268420-mRNA-1:exon:364;Parent=Msa1268420-mRNA-1
chr8_3 CDS 1411352 1411403 1411352 ID=Msa1268420-mRNA-1:cds;Parent=Msa1268420-mRNA-1
chr8_3 CDS 1411507 1411576 1411507 ID=Msa1268420-mRNA-1:cds;Parent=Msa1268420-mRNA-1
chr8_3 CDS 1411859 1411901 1411859 ID=Msa1268420-mRNA-1:cds;Parent=Msa1268420-mRNA-1
chr8_3 CDS 1412167 1412304 1412167 ID=Msa1268420-mRNA-1:cds;Parent=Msa1268420-mRNA-1
chr8_3 CDS 1412439 1413449 1412439 ID=Msa1268420-mRNA-1:cds;Parent=Msa1268420-mRNA-1
chr8_3 CDS 1413860 1414075 1413860 ID=Msa1268420-mRNA-1:cds;Parent=Msa1268420-mRNA-1
chr8_3 three_prime_UTR 1414076 1414270 1414076 ID=Msa1268420-mRNA-1:three_prime_utr;Parent=Msa1268420-mRNA-1
Gene Sequence

>Msa1268420

ATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATCGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGTACTGGTCTAGGTCTTTGCATCGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAGGGAACATTGATGAGATTATGTTTGCTTCTTAGTGCACCAATGGATGTCACAGAGCAACATGCTTTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTACAAGGCAATATGGGTAGAATAATAACATCGAAGTGGTTAACCAAAAAAGGGGTGTGCACAATGGAAGCATCTGAATGGAATGGACTAACACAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAATGCATAACAATAACAACTTTGATGCACACTATCCAATAAATCTTGAAGGATTTAAGTCTAAACTACTAAGCATCAAAGATATGAGGAATCCAATTTTTGTCATCGTTGTTGACATTGGTTTGCTTGACTTAAGCACAGATATATGGAAAGAACAACTTAACTTCCTTCACAAGTATTTTGGAAGAGCGAAATTTGTGTGGATGCTGAATCATGACACATCAAATACCATAAAGACGGAGCTTCGTCGGAAAGGACACTTACTAATGGTTAACAAACCTCTATACAAAGCAAAAATGATTCATATTTTGGAAGCTGTTATAAAAGAGAGAAATCTTGAGTTGCAAAAGAAAAACATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCTACTCAATTTGAAGCTGCTACTAGCTCTGATGATTCTGATATATCTGAAATTAGTCAAAAACCAATTTTAAAGTTAACCGATGAAAATGAACATTTGGAAGAAAATAATCCAAGGGAAGAAGAATCTTGTACCTCTGAAGACAACAAAGCTAAAGAAACAAACTTTGCAACACAAGCTTATGATAGGGTGACAAGGTCAAGAAAGGAAGTGAATGATAAGAAATCACTTGAGGGGTTAAGGATTTTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACAATAATGCTTGAAAAAATGGGAGCTGTTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTGGATGCTCTTAATTATATGGTAAGTGCTGAAGATTGTAGAAGAGAGTCTCTCCAGAAGGACAAAAATACAAGATCACAAACAGAAATTTTGACTTGCCATCAATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAGGAAGGAACAGGCAAACACATTCCAATTGTTGCTCTAACAGCACATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTTGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCTTATGGTCTCAACCATTCTCTCACTCACTAAACCAACAACCTAG

Protein sequence

>Msa1268420

MRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPMDVTEQHALNLTDNGLVVLLALQGNMGRIITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSMHNNNNFDAHYPINLEGFKSKLLSIKDMRNPIFVIVVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWMLNHDTSNTIKTELRRKGHLLMVNKPLYKAKMIHILEAVIKERNLELQKKNMKEGDLHEFLEIDSTQFEAATSSDDSDISEISQKPILKLTDENEHLEENNPREEESCTSEDNKAKETNFATQAYDRVTRSRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNYMVSAEDCRRESLQKDKNTRSQTEILTCHQYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTILSLTKPTT*