AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1268390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1268390 MtrunA17_Chr5g0405701 96.260 508 19 0 1 508 692 1199 0.0 1003
Msa1268390 MtrunA17_Chr8g0371601 67.978 534 125 7 3 509 656 1170 0.0 696
Msa1268390 MtrunA17_Chr8g0377481 34.722 144 62 2 356 493 838 955 1.73e-18 89.4
Msa1268390 MtrunA17_Chr3g0122391 34.932 146 64 2 353 493 893 1012 2.79e-17 85.5
Msa1268390 MtrunA17_Chr1g0197591 38.129 139 63 5 354 492 921 1036 1.32e-16 83.2
Msa1268390 MtrunA17_Chr1g0194731 32.450 151 78 4 343 492 312 439 7.59e-16 79.7
Msa1268390 MtrunA17_Chr8g0392301 31.953 169 74 4 356 509 858 1000 9.36e-16 80.5
Msa1268390 MtrunA17_Chr5g0447641 30.994 171 68 4 347 493 1056 1200 9.51e-14 74.3
Msa1268390 MtrunA17_Chr8g0343551 52.381 63 26 2 430 492 15 73 2.52e-13 65.9
Msa1268390 MtrunA17_Chr1g0150511 30.189 159 58 3 361 494 870 1000 2.24e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1268390 AT2G17820.1 58.065 527 188 8 4 508 684 1199 0.0 585
Msa1268390 AT2G47430.1 27.076 554 292 18 10 493 597 1108 1.37e-34 139
Msa1268390 AT2G01830.2 33.540 161 75 2 353 507 939 1073 2.51e-17 85.9
Msa1268390 AT2G01830.5 33.540 161 75 2 353 507 928 1062 2.69e-17 85.9
Msa1268390 AT2G01830.1 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa1268390 AT2G01830.4 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa1268390 AT2G01830.6 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa1268390 AT2G01830.3 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa1268390 AT5G35750.1 28.313 166 75 2 360 507 1036 1175 3.04e-15 79.3
Msa1268390 AT1G27320.1 32.051 156 62 2 356 493 887 1016 4.19e-15 79.0
Msa1268390 AT3G04580.2 33.553 152 72 4 351 501 634 757 1.01e-13 74.3
Msa1268390 AT3G04580.1 33.553 152 72 4 351 501 634 757 1.01e-13 74.3

Find 92 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGACGAAGCTCCGTCTTTA+TGG 0.118108 8_3:-1379741 None:intergenic
TTAAATCCTTCAAGATTTAT+TGG 0.172560 8_3:-1379548 None:intergenic
TTACAACTATGTACATTTCT+AGG 0.187196 8_3:-1381006 None:intergenic
TCATCGGTTAACTTTAAAAT+TGG 0.200671 8_3:-1379971 None:intergenic
AACTTCCTTCACAAGTATTT+TGG 0.220256 8_3:+1379674 Msa1268390:CDS
GTTGCAACCCTTTGAATTAC+TGG 0.261968 8_3:-1380172 None:intergenic
GCCAATTGACTTCAAGCTTA+TGG 0.265808 8_3:+1380950 Msa1268390:CDS
GCTTGCACTACAAGGCAATA+TGG 0.271450 8_3:+1379379 Msa1268390:CDS
TTCTATTAGGTTTATAGTTA+TGG 0.274459 8_3:-1381148 None:intergenic
TATATACATTTATTTCTATT+AGG 0.278525 8_3:-1381161 None:intergenic
TCAATATGATTTGATCCTAA+TGG 0.301867 8_3:+1380354 Msa1268390:CDS
GCCTCATATCCATCCATCTT+TGG 0.303088 8_3:-1380798 None:intergenic
CATGCCAACCTTAAGGCATT+TGG 0.328149 8_3:-1380910 None:intergenic
AGTGGATGCTCTTAATTATA+TGG 0.332374 8_3:+1380252 Msa1268390:CDS
TTGCAACACAAGCTTATGAT+AGG 0.334949 8_3:+1380074 Msa1268390:CDS
TTGACTTAAGCACAGATATA+TGG 0.337006 8_3:+1379639 Msa1268390:CDS
AGAAATCACTTGAGGGGTTA+AGG 0.349957 8_3:+1380128 Msa1268390:CDS
GCTTACAGTCTAGTAGTTGA+TGG 0.352312 8_3:-1378495 None:intergenic
AGAAATCAAGGTTACCAAAA+AGG 0.359146 8_3:+1379119 Msa1268390:CDS
TATGTACATTTCTAGGTTGT+TGG 0.363384 8_3:-1380999 None:intergenic
AACCGATGAAAATGAACATT+TGG 0.389298 8_3:+1379985 Msa1268390:CDS
ACCATAAGCTTGAAGTCAAT+TGG 0.402673 8_3:-1380951 None:intergenic
GTACAAGATTCTTCTTCCCT+TGG 0.408031 8_3:-1380019 None:intergenic
ATGAGGCAACAAAAGCAATA+AGG 0.417051 8_3:+1380814 Msa1268390:CDS
AACACAGAATCCCATTTGCT+TGG 0.417471 8_3:-1378450 None:intergenic
GAGATAACAAAGTGATACTT+TGG 0.425255 8_3:+1378291 Msa1268390:CDS
TTTGACAGACAATGGCTTAG+TGG 0.429155 8_3:+1379218 Msa1268390:CDS
AGGCATGGAGGTACTGGTCT+AGG 0.437294 8_3:+1378792 Msa1268390:intron
TATTTCAGGCATGGAGGTAC+TGG 0.439009 8_3:+1378786 Msa1268390:intron
TTTGATCCTAATGGATTGTC+AGG 0.439291 8_3:+1380363 Msa1268390:CDS
CACTATCCAATAAATCTTGA+AGG 0.440106 8_3:+1379542 Msa1268390:CDS
TCTTTGCATCGTTAGGAACT+TGG 0.444026 8_3:+1378815 Msa1268390:CDS
TAGGTATCGATCCAAGCAAA+TGG 0.444365 8_3:+1378439 Msa1268390:intron
TTAGGATCAAATCATATTGA+TGG 0.448278 8_3:-1380351 None:intergenic
TCGGAAAGGACACTTACTAA+TGG 0.460922 8_3:+1379760 Msa1268390:CDS
AAGCATCCATGCCAACCTTA+AGG 0.465093 8_3:-1380917 None:intergenic
TGGTTTAGTGAGTGAGAGAA+TGG 0.469497 8_3:-1380979 None:intergenic
AGAAATAAATGTATATAGAA+AGG 0.471186 8_3:+1381167 Msa1268390:three_prime_UTR
CTTGCACTACAAGGCAATAT+GGG 0.472560 8_3:+1379380 Msa1268390:CDS
ATATGATTGCACTTTGTTGA+AGG 0.476921 8_3:+1381108 Msa1268390:three_prime_UTR
TTTAGCTTTGTTGTCTTCAG+AGG 0.483395 8_3:-1380041 None:intergenic
AGGAAATCAGAGGAAGGAAC+AGG 0.483804 8_3:+1380834 Msa1268390:CDS
CAGGTATTGCTTGCACTACA+AGG 0.486574 8_3:+1379371 Msa1268390:intron
TGATGAAGCCAAATGCCTTA+AGG 0.487966 8_3:+1380902 Msa1268390:CDS
GCCAAAGATGGATGGATATG+AGG 0.491952 8_3:+1380797 Msa1268390:CDS
AGTTCACTAGTATCAGTAAA+CGG 0.492218 8_3:+1381058 Msa1268390:three_prime_UTR
AATGATAAGAAATCACTTGA+GGG 0.496123 8_3:+1380121 Msa1268390:CDS
CCATAAAGACGGAGCTTCGT+CGG 0.496665 8_3:+1379741 Msa1268390:CDS
GTTGTTGTTGCTGTAGGTGA+TGG 0.497897 8_3:+1380220 Msa1268390:CDS
TTCATACCTGACAATCCATT+AGG 0.501681 8_3:-1380369 None:intergenic
TAAGATGGGTGGAGAAATCA+AGG 0.502216 8_3:+1379107 Msa1268390:CDS
GATACTTTGGTTTGAAGTTG+AGG 0.505428 8_3:+1378304 Msa1268390:CDS
GTCTAGGTCTTTGCATCGTT+AGG 0.507867 8_3:+1378808 Msa1268390:CDS
TACTAAGCATCAAAGATATG+AGG 0.509714 8_3:+1379579 Msa1268390:CDS
CTCTTCCAAAATACTTGTGA+AGG 0.511302 8_3:-1379679 None:intergenic
GCTTTAAATTTGACAGACAA+TGG 0.517382 8_3:+1379210 Msa1268390:CDS
TGATACTAGTGAACTCAGTA+AGG 0.519583 8_3:-1381050 None:intergenic
AAGATACACCAGTAATTCAA+AGG 0.521392 8_3:+1380164 Msa1268390:CDS
TTTGTCATCGTTGTTGACAT+TGG 0.524996 8_3:+1379611 Msa1268390:CDS
GAAGTTGAGGACACAGGCTG+TGG 0.528521 8_3:+1378317 Msa1268390:CDS
TTTGCTTCTTAGTGCACCAA+TGG 0.532448 8_3:+1379170 Msa1268390:CDS
AAGACGGAGCTTCGTCGGAA+AGG 0.533943 8_3:+1379746 Msa1268390:CDS
TGTGCTGTTAGAGCAACAAT+TGG 0.534132 8_3:-1380867 None:intergenic
TGGATGGCAGGTTAATAAGA+TGG 0.537101 8_3:+1379092 Msa1268390:intron
GGAGCTGTTGTTGTTGCTGT+AGG 0.539267 8_3:+1380214 Msa1268390:CDS
GGATGGCAGGTTAATAAGAT+GGG 0.539780 8_3:+1379093 Msa1268390:intron
AGGTATCGATCCAAGCAAAT+GGG 0.547486 8_3:+1378440 Msa1268390:intron
TGTTGCTCTGTGACATCCAT+TGG 0.548514 8_3:-1379186 None:intergenic
AATTAGATGCCAAAGATGGA+TGG 0.551523 8_3:+1380789 Msa1268390:intron
GGAAAATTAGATGCCAAAGA+TGG 0.561731 8_3:+1380785 Msa1268390:intron
TAGGGTGACAAGGTCAAGAA+AGG 0.566276 8_3:+1380093 Msa1268390:CDS
GCACAATGGAAGCATCTGAA+TGG 0.570506 8_3:+1379444 Msa1268390:CDS
ATGGAAGCATCTGAATGGAA+TGG 0.570666 8_3:+1379449 Msa1268390:CDS
TGCAACACAAGCTTATGATA+GGG 0.572109 8_3:+1380075 Msa1268390:CDS
AGATACACCAGTAATTCAAA+GGG 0.575176 8_3:+1380165 Msa1268390:CDS
GAATGATAAGAAATCACTTG+AGG 0.584649 8_3:+1380120 Msa1268390:CDS
GAAGCCAAATGCCTTAAGGT+TGG 0.589210 8_3:+1380906 Msa1268390:CDS
TGGCAGGTTAATAAGATGGG+TGG 0.597564 8_3:+1379096 Msa1268390:intron
CACATCAAATACCATAAAGA+CGG 0.600188 8_3:+1379730 Msa1268390:CDS
ATTTGGAAGAAAATAATCCA+AGG 0.600592 8_3:+1380002 Msa1268390:CDS
TGGTTTGAAGTTGAGGACAC+AGG 0.609745 8_3:+1378311 Msa1268390:CDS
TAGAAGAGAGTCTCTCCAGA+AGG 0.615474 8_3:+1380291 Msa1268390:CDS
CAAATGCCTTAAGGTTGGCA+TGG 0.617547 8_3:+1380911 Msa1268390:CDS
AAAAGCAATAAGGAAATCAG+AGG 0.621819 8_3:+1380824 Msa1268390:CDS
GCAATAAGGAAATCAGAGGA+AGG 0.623445 8_3:+1380828 Msa1268390:CDS
TTTGGAAGAAAATAATCCAA+GGG 0.626055 8_3:+1380003 Msa1268390:CDS
TTGGAAGAGCGAAATTTGTG+TGG 0.640386 8_3:+1379693 Msa1268390:CDS
TTTACTTATTTCAGGCATGG+AGG 0.660130 8_3:+1378780 Msa1268390:intron
ATGATAAGAAATCACTTGAG+GGG 0.670799 8_3:+1380122 Msa1268390:CDS
GTAGAATAATAACATCGAAG+TGG 0.676676 8_3:+1379402 Msa1268390:CDS
AGGTGATGGACAACAAGCAG+TGG 0.694466 8_3:+1380234 Msa1268390:CDS
AAGCTTATGATAGGGTGACA+AGG 0.699339 8_3:+1380083 Msa1268390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATACATTTATTTCTATT+AGG - chr8_3:1381164-1381183 None:intergenic 10.0%
!!! TTCATGAAATGTAAATTTTA+AGG - chr8_3:1378349-1378368 None:intergenic 15.0%
!!! ACTTATTTTATTTTGACAAA+AGG - chr8_3:1378378-1378397 None:intergenic 15.0%
!! AGAAATAAATGTATATAGAA+AGG + chr8_3:1381167-1381186 Msa1268390:three_prime_UTR 15.0%
!!! AGATCATACAATTGAAATTT+TGG + chr8_3:1378610-1378629 Msa1268390:intron 20.0%
!!! ATTTTCTGAAGAAGAAAAAA+AGG + chr8_3:1378903-1378922 Msa1268390:intron 20.0%
!! AAAAAAATTCACATTTCCTT+TGG + chr8_3:1378943-1378962 Msa1268390:intron 20.0%
!!! TAAGTTCCTTTTATTTTTGT+TGG + chr8_3:1379072-1379091 Msa1268390:intron 20.0%
!! GAAATTTAAGGATAACAAAT+AGG + chr8_3:1379325-1379344 Msa1268390:intron 20.0%
!! TTAAATCCTTCAAGATTTAT+TGG - chr8_3:1379551-1379570 None:intergenic 20.0%
!!! AGCAAAAATGATTCATATTT+TGG + chr8_3:1379802-1379821 Msa1268390:CDS 20.0%
!! AACAATAATGCTTGAAAAAA+TGG + chr8_3:1380192-1380211 Msa1268390:CDS 20.0%
!! ACAATAATGCTTGAAAAAAT+GGG + chr8_3:1380193-1380212 Msa1268390:CDS 20.0%
!! TTTGGATAAATAGTTTAATC+AGG + chr8_3:1380484-1380503 Msa1268390:intron 20.0%
!! ATATAAAATTACACTTGTGT+TGG + chr8_3:1380532-1380551 Msa1268390:intron 20.0%
!! ATATCTAATAAGTGAATATC+AGG + chr8_3:1380731-1380750 Msa1268390:intron 20.0%
!! TTCTATTAGGTTTATAGTTA+TGG - chr8_3:1381151-1381170 None:intergenic 20.0%
! AAACAAATGTGATTTATTCG+TGG - chr8_3:1378401-1378420 None:intergenic 25.0%
! TTTGTTTATTTCCTATGTTG+TGG + chr8_3:1378414-1378433 Msa1268390:intron 25.0%
! ATGTATATAGTCAATGATCT+CGG + chr8_3:1378577-1378596 Msa1268390:intron 25.0%
! GTAAGAAAAAACAAACATTG+AGG - chr8_3:1378729-1378748 None:intergenic 25.0%
!!! TTCCTTTTATTTTTGTTGGA+TGG + chr8_3:1379076-1379095 Msa1268390:intron 25.0%
! CTAAAAGCAAGAGAAATTTA+AGG + chr8_3:1379313-1379332 Msa1268390:intron 25.0%
!!! ATCATTTTTGCTTTGTATAG+AGG - chr8_3:1379794-1379813 None:intergenic 25.0%
! CAAAAGAAAAACATGAAAGA+GGG + chr8_3:1379857-1379876 Msa1268390:CDS 25.0%
!!! TCATCGGTTAACTTTAAAAT+TGG - chr8_3:1379974-1379993 None:intergenic 25.0%
!! TTCCAAATGTTCATTTTCAT+CGG - chr8_3:1379990-1380009 None:intergenic 25.0%
! ATTTGGAAGAAAATAATCCA+AGG + chr8_3:1380002-1380021 Msa1268390:CDS 25.0%
! TTTGGAAGAAAATAATCCAA+GGG + chr8_3:1380003-1380022 Msa1268390:CDS 25.0%
! AATGATAAGAAATCACTTGA+GGG + chr8_3:1380121-1380140 Msa1268390:CDS 25.0%
! TTAGGATCAAATCATATTGA+TGG - chr8_3:1380354-1380373 None:intergenic 25.0%
! TCAATATGATTTGATCCTAA+TGG + chr8_3:1380354-1380373 Msa1268390:CDS 25.0%
!! CAGTCAAATTATTTTCATAC+AGG + chr8_3:1380665-1380684 Msa1268390:intron 25.0%
! GATATAAAAAAGCTACCTAT+TGG - chr8_3:1380716-1380735 None:intergenic 25.0%
! TTACAACTATGTACATTTCT+AGG - chr8_3:1381009-1381028 None:intergenic 25.0%
GAGATAACAAAGTGATACTT+TGG + chr8_3:1378291-1378310 Msa1268390:CDS 30.0%
TATTTCCTATGTTGTGGTAT+AGG + chr8_3:1378420-1378439 Msa1268390:intron 30.0%
CTGAATCCTTTACTTATTTC+AGG + chr8_3:1378772-1378791 Msa1268390:intron 30.0%
! TTTTAGACCTAGTTTACCAA+AGG - chr8_3:1378962-1378981 None:intergenic 30.0%
!!! TGATTGTGTGATTGTTTTTG+AGG + chr8_3:1379034-1379053 Msa1268390:intron 30.0%
TGCCATCCAACAAAAATAAA+AGG - chr8_3:1379081-1379100 None:intergenic 30.0%
!!! TTTTATTTTTGTTGGATGGC+AGG + chr8_3:1379080-1379099 Msa1268390:intron 30.0%
AGAAATCAAGGTTACCAAAA+AGG + chr8_3:1379119-1379138 Msa1268390:CDS 30.0%
! GCTTTAAATTTGACAGACAA+TGG + chr8_3:1379210-1379229 Msa1268390:CDS 30.0%
TAAATACTAAGTGTGAATGC+AGG + chr8_3:1379352-1379371 Msa1268390:intron 30.0%
GTAGAATAATAACATCGAAG+TGG + chr8_3:1379402-1379421 Msa1268390:CDS 30.0%
!! ATGGACTAACACAAATTTTG+AGG + chr8_3:1379468-1379487 Msa1268390:CDS 30.0%
! TGGACTAACACAAATTTTGA+GGG + chr8_3:1379469-1379488 Msa1268390:CDS 30.0%
CACTATCCAATAAATCTTGA+AGG + chr8_3:1379542-1379561 Msa1268390:CDS 30.0%
TACTAAGCATCAAAGATATG+AGG + chr8_3:1379579-1379598 Msa1268390:CDS 30.0%
TCAACAACGATGACAAAAAT+TGG - chr8_3:1379608-1379627 None:intergenic 30.0%
TTGACTTAAGCACAGATATA+TGG + chr8_3:1379639-1379658 Msa1268390:CDS 30.0%
! AACTTCCTTCACAAGTATTT+TGG + chr8_3:1379674-1379693 Msa1268390:CDS 30.0%
CACATCAAATACCATAAAGA+CGG + chr8_3:1379730-1379749 Msa1268390:CDS 30.0%
GCAAAAGAAAAACATGAAAG+AGG + chr8_3:1379856-1379875 Msa1268390:CDS 30.0%
AACCGATGAAAATGAACATT+TGG + chr8_3:1379985-1380004 Msa1268390:CDS 30.0%
GAATGATAAGAAATCACTTG+AGG + chr8_3:1380120-1380139 Msa1268390:CDS 30.0%
ATGATAAGAAATCACTTGAG+GGG + chr8_3:1380122-1380141 Msa1268390:CDS 30.0%
AAGATACACCAGTAATTCAA+AGG + chr8_3:1380164-1380183 Msa1268390:CDS 30.0%
AGATACACCAGTAATTCAAA+GGG + chr8_3:1380165-1380184 Msa1268390:CDS 30.0%
AGTGGATGCTCTTAATTATA+TGG + chr8_3:1380252-1380271 Msa1268390:CDS 30.0%
!! ATCTTGTATTTTTGTCCTTC+TGG - chr8_3:1380309-1380328 None:intergenic 30.0%
TGAACCAGAATAACAGTATT+AGG + chr8_3:1380388-1380407 Msa1268390:intron 30.0%
AAGTCCTAATACTGTTATTC+TGG - chr8_3:1380395-1380414 None:intergenic 30.0%
CTTGTGAAATTGTTTGACAT+AGG + chr8_3:1380456-1380475 Msa1268390:intron 30.0%
! TTATCAAGTATTGCTCCAAT+AGG + chr8_3:1380698-1380717 Msa1268390:intron 30.0%
TAATGCTTTATCTGTGTTTG+TGG + chr8_3:1380764-1380783 Msa1268390:intron 30.0%
AAAAGCAATAAGGAAATCAG+AGG + chr8_3:1380824-1380843 Msa1268390:CDS 30.0%
! TATGTACATTTCTAGGTTGT+TGG - chr8_3:1381002-1381021 None:intergenic 30.0%
AGTTCACTAGTATCAGTAAA+CGG + chr8_3:1381058-1381077 Msa1268390:three_prime_UTR 30.0%
ATATGATTGCACTTTGTTGA+AGG + chr8_3:1381108-1381127 Msa1268390:three_prime_UTR 30.0%
!! GATACTTTGGTTTGAAGTTG+AGG + chr8_3:1378304-1378323 Msa1268390:CDS 35.0%
ATTTCTACAGTCATTGCAGT+CGG - chr8_3:1378699-1378718 None:intergenic 35.0%
TCCTTTACTTATTTCAGGCA+TGG + chr8_3:1378777-1378796 Msa1268390:intron 35.0%
TCCATGCCTGAAATAAGTAA+AGG - chr8_3:1378781-1378800 None:intergenic 35.0%
TTTACTTATTTCAGGCATGG+AGG + chr8_3:1378780-1378799 Msa1268390:intron 35.0%
CACATTTCCTTTGGTAAACT+AGG + chr8_3:1378952-1378971 Msa1268390:intron 35.0%
AATCAAGGTTACCAAAAAGG+AGG + chr8_3:1379122-1379141 Msa1268390:CDS 35.0%
ATCAAGGTTACCAAAAAGGA+GGG + chr8_3:1379123-1379142 Msa1268390:CDS 35.0%
TCGAAGTGGTTAACCAAAAA+AGG + chr8_3:1379416-1379435 Msa1268390:CDS 35.0%
CGAAGTGGTTAACCAAAAAA+GGG + chr8_3:1379417-1379436 Msa1268390:CDS 35.0%
GAAGTGGTTAACCAAAAAAG+GGG + chr8_3:1379418-1379437 Msa1268390:CDS 35.0%
TTTGTCATCGTTGTTGACAT+TGG + chr8_3:1379611-1379630 Msa1268390:CDS 35.0%
CTCTTCCAAAATACTTGTGA+AGG - chr8_3:1379682-1379701 None:intergenic 35.0%
!! TTTAGCTTTGTTGTCTTCAG+AGG - chr8_3:1380044-1380063 None:intergenic 35.0%
TTGCAACACAAGCTTATGAT+AGG + chr8_3:1380074-1380093 Msa1268390:CDS 35.0%
TGCAACACAAGCTTATGATA+GGG + chr8_3:1380075-1380094 Msa1268390:CDS 35.0%
!! TTTGATCCTAATGGATTGTC+AGG + chr8_3:1380363-1380382 Msa1268390:CDS 35.0%
TTCATACCTGACAATCCATT+AGG - chr8_3:1380372-1380391 None:intergenic 35.0%
ACGCATTTGAGCTTATTTAC+TGG + chr8_3:1380425-1380444 Msa1268390:intron 35.0%
TGTTTGACATAGGTCATGTT+TGG + chr8_3:1380466-1380485 Msa1268390:intron 35.0%
! AAAATTACACTTGTGTTGGC+CGG + chr8_3:1380536-1380555 Msa1268390:intron 35.0%
GGAAAATTAGATGCCAAAGA+TGG + chr8_3:1380785-1380804 Msa1268390:intron 35.0%
AATTAGATGCCAAAGATGGA+TGG + chr8_3:1380789-1380808 Msa1268390:intron 35.0%
ATGAGGCAACAAAAGCAATA+AGG + chr8_3:1380814-1380833 Msa1268390:CDS 35.0%
ACCATAAGCTTGAAGTCAAT+TGG - chr8_3:1380954-1380973 None:intergenic 35.0%
TGATACTAGTGAACTCAGTA+AGG - chr8_3:1381053-1381072 None:intergenic 35.0%
CGATACCTATACCACAACAT+AGG - chr8_3:1378428-1378447 None:intergenic 40.0%
!! TAGGTATCGATCCAAGCAAA+TGG + chr8_3:1378439-1378458 Msa1268390:intron 40.0%
!! AGGTATCGATCCAAGCAAAT+GGG + chr8_3:1378440-1378459 Msa1268390:intron 40.0%
AACACAGAATCCCATTTGCT+TGG - chr8_3:1378453-1378472 None:intergenic 40.0%
GCTTACAGTCTAGTAGTTGA+TGG - chr8_3:1378498-1378517 None:intergenic 40.0%
TCTTTGCATCGTTAGGAACT+TGG + chr8_3:1378815-1378834 Msa1268390:CDS 40.0%
TTGGACTGTAGGATCAACAT+CGG - chr8_3:1379001-1379020 None:intergenic 40.0%
GTTGATCCTACAGTCCAAAT+CGG + chr8_3:1379003-1379022 Msa1268390:intron 40.0%
TTGATCCTACAGTCCAAATC+GGG + chr8_3:1379004-1379023 Msa1268390:intron 40.0%
TGGATGGCAGGTTAATAAGA+TGG + chr8_3:1379092-1379111 Msa1268390:intron 40.0%
GGATGGCAGGTTAATAAGAT+GGG + chr8_3:1379093-1379112 Msa1268390:intron 40.0%
TAAGATGGGTGGAGAAATCA+AGG + chr8_3:1379107-1379126 Msa1268390:CDS 40.0%
TTTGCTTCTTAGTGCACCAA+TGG + chr8_3:1379170-1379189 Msa1268390:CDS 40.0%
TTTGACAGACAATGGCTTAG+TGG + chr8_3:1379218-1379237 Msa1268390:CDS 40.0%
CTTGCACTACAAGGCAATAT+GGG + chr8_3:1379380-1379399 Msa1268390:CDS 40.0%
!! ATGGAAGCATCTGAATGGAA+TGG + chr8_3:1379449-1379468 Msa1268390:CDS 40.0%
TTGGAAGAGCGAAATTTGTG+TGG + chr8_3:1379693-1379712 Msa1268390:CDS 40.0%
TCGGAAAGGACACTTACTAA+TGG + chr8_3:1379760-1379779 Msa1268390:CDS 40.0%
GTACAAGATTCTTCTTCCCT+TGG - chr8_3:1380022-1380041 None:intergenic 40.0%
AAGCTTATGATAGGGTGACA+AGG + chr8_3:1380083-1380102 Msa1268390:CDS 40.0%
AGAAATCACTTGAGGGGTTA+AGG + chr8_3:1380128-1380147 Msa1268390:CDS 40.0%
GTTGCAACCCTTTGAATTAC+TGG - chr8_3:1380175-1380194 None:intergenic 40.0%
! CTTTAGAGAAGCACACTTCA+AGG - chr8_3:1380580-1380599 None:intergenic 40.0%
CTTGAAGTGTGCTTCTCTAA+AGG + chr8_3:1380578-1380597 Msa1268390:intron 40.0%
CTAAACTAGCCCACTGAAAT+AGG - chr8_3:1380628-1380647 None:intergenic 40.0%
GCAATAAGGAAATCAGAGGA+AGG + chr8_3:1380828-1380847 Msa1268390:CDS 40.0%
! TGTGCTGTTAGAGCAACAAT+TGG - chr8_3:1380870-1380889 None:intergenic 40.0%
TGATGAAGCCAAATGCCTTA+AGG + chr8_3:1380902-1380921 Msa1268390:CDS 40.0%
! GCCAATTGACTTCAAGCTTA+TGG + chr8_3:1380950-1380969 Msa1268390:CDS 40.0%
TGGTTTAGTGAGTGAGAGAA+TGG - chr8_3:1380982-1381001 None:intergenic 40.0%
! TGGTTTGAAGTTGAGGACAC+AGG + chr8_3:1378311-1378330 Msa1268390:CDS 45.0%
AGTCGGCTGATCTAAATCGT+TGG - chr8_3:1378682-1378701 None:intergenic 45.0%
! TATTTCAGGCATGGAGGTAC+TGG + chr8_3:1378786-1378805 Msa1268390:intron 45.0%
GTCTAGGTCTTTGCATCGTT+AGG + chr8_3:1378808-1378827 Msa1268390:CDS 45.0%
TGGACTGTAGGATCAACATC+GGG - chr8_3:1379000-1379019 None:intergenic 45.0%
TGATCCTACAGTCCAAATCG+GGG + chr8_3:1379005-1379024 Msa1268390:intron 45.0%
CAATCACACATTCCCCGATT+TGG - chr8_3:1379020-1379039 None:intergenic 45.0%
TGGCAGGTTAATAAGATGGG+TGG + chr8_3:1379096-1379115 Msa1268390:intron 45.0%
GTTACCAAAAAGGAGGGTCA+GGG + chr8_3:1379129-1379148 Msa1268390:CDS 45.0%
TGTTGCTCTGTGACATCCAT+TGG - chr8_3:1379189-1379208 None:intergenic 45.0%
! CAGGTATTGCTTGCACTACA+AGG + chr8_3:1379371-1379390 Msa1268390:intron 45.0%
GCTTGCACTACAAGGCAATA+TGG + chr8_3:1379379-1379398 Msa1268390:CDS 45.0%
!!! CATTGTGCACACCCCTTTTT+TGG - chr8_3:1379432-1379451 None:intergenic 45.0%
! CAAAAAAGGGGTGTGCACAA+TGG + chr8_3:1379430-1379449 Msa1268390:CDS 45.0%
!! GCACAATGGAAGCATCTGAA+TGG + chr8_3:1379444-1379463 Msa1268390:CDS 45.0%
TAGGGTGACAAGGTCAAGAA+AGG + chr8_3:1380093-1380112 Msa1268390:CDS 45.0%
! GTTGTTGTTGCTGTAGGTGA+TGG + chr8_3:1380220-1380239 Msa1268390:CDS 45.0%
TAGAAGAGAGTCTCTCCAGA+AGG + chr8_3:1380291-1380310 Msa1268390:CDS 45.0%
! TGTGCTTCTCTAAAGGTCTC+AGG + chr8_3:1380585-1380604 Msa1268390:intron 45.0%
GCCAAAGATGGATGGATATG+AGG + chr8_3:1380797-1380816 Msa1268390:CDS 45.0%
GCCTCATATCCATCCATCTT+TGG - chr8_3:1380801-1380820 None:intergenic 45.0%
AGGAAATCAGAGGAAGGAAC+AGG + chr8_3:1380834-1380853 Msa1268390:CDS 45.0%
GAAGCCAAATGCCTTAAGGT+TGG + chr8_3:1380906-1380925 Msa1268390:CDS 45.0%
! CATGCCAACCTTAAGGCATT+TGG - chr8_3:1380913-1380932 None:intergenic 45.0%
CAAATGCCTTAAGGTTGGCA+TGG + chr8_3:1380911-1380930 Msa1268390:CDS 45.0%
AAGCATCCATGCCAACCTTA+AGG - chr8_3:1380920-1380939 None:intergenic 45.0%
ACTGTAGGATCAACATCGGG+CGG - chr8_3:1378997-1379016 None:intergenic 50.0%
!! CATTCCCCGATTTGGACTGT+AGG - chr8_3:1379012-1379031 None:intergenic 50.0%
GGTTACCAAAAAGGAGGGTC+AGG + chr8_3:1379128-1379147 Msa1268390:CDS 50.0%
! TGTTCCCTGACCCTCCTTTT+TGG - chr8_3:1379136-1379155 None:intergenic 50.0%
CCATAAAGACGGAGCTTCGT+CGG + chr8_3:1379741-1379760 Msa1268390:CDS 50.0%
! GGAGCTGTTGTTGTTGCTGT+AGG + chr8_3:1380214-1380233 Msa1268390:CDS 50.0%
!! AGGTGATGGACAACAAGCAG+TGG + chr8_3:1380234-1380253 Msa1268390:CDS 50.0%
! ATTACACTTGTGTTGGCCGG+TGG + chr8_3:1380539-1380558 Msa1268390:intron 50.0%
TAGCCCACTGAAATAGGCAC+CGG - chr8_3:1380622-1380641 None:intergenic 50.0%
GAAGTTGAGGACACAGGCTG+TGG + chr8_3:1378317-1378336 Msa1268390:CDS 55.0%
!! AGGCATGGAGGTACTGGTCT+AGG + chr8_3:1378792-1378811 Msa1268390:intron 55.0%
CCGACGAAGCTCCGTCTTTA+TGG - chr8_3:1379744-1379763 None:intergenic 55.0%
AAGACGGAGCTTCGTCGGAA+AGG + chr8_3:1379746-1379765 Msa1268390:CDS 55.0%
GTCTCTCAAGCCAACACCAC+CGG - chr8_3:1380558-1380577 None:intergenic 55.0%
GTCTCAGGCTCAATTCTCCC+CGG + chr8_3:1380600-1380619 Msa1268390:intron 55.0%
TCCCCGGTGCCTATTTCAGT+GGG + chr8_3:1380616-1380635 Msa1268390:intron 55.0%
AGCCCACTGAAATAGGCACC+GGG - chr8_3:1380621-1380640 None:intergenic 55.0%
! CTTGTGTTGGCCGGTGGTGT+TGG + chr8_3:1380545-1380564 Msa1268390:intron 60.0%
CTCCCCGGTGCCTATTTCAG+TGG + chr8_3:1380615-1380634 Msa1268390:intron 60.0%
! GCCCACTGAAATAGGCACCG+GGG - chr8_3:1380620-1380639 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 1378287 1381205 1378287 ID=Msa1268390;Name=Msa1268390
chr8_3 mRNA 1378287 1381205 1378287 ID=Msa1268390-mRNA-1;Parent=Msa1268390;Name=Msa1268390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.4|0.16|0.5|1|1|6|195|509
chr8_3 exon 1378287 1378338 1378287 ID=Msa1268390-mRNA-1:exon:273;Parent=Msa1268390-mRNA-1
chr8_3 exon 1378442 1378511 1378442 ID=Msa1268390-mRNA-1:exon:274;Parent=Msa1268390-mRNA-1
chr8_3 exon 1378794 1378836 1378794 ID=Msa1268390-mRNA-1:exon:275;Parent=Msa1268390-mRNA-1
chr8_3 exon 1379102 1379239 1379102 ID=Msa1268390-mRNA-1:exon:276;Parent=Msa1268390-mRNA-1
chr8_3 exon 1379374 1380384 1379374 ID=Msa1268390-mRNA-1:exon:277;Parent=Msa1268390-mRNA-1
chr8_3 exon 1380795 1381205 1380795 ID=Msa1268390-mRNA-1:exon:278;Parent=Msa1268390-mRNA-1
chr8_3 CDS 1378287 1378338 1378287 ID=Msa1268390-mRNA-1:cds;Parent=Msa1268390-mRNA-1
chr8_3 CDS 1378442 1378511 1378442 ID=Msa1268390-mRNA-1:cds;Parent=Msa1268390-mRNA-1
chr8_3 CDS 1378794 1378836 1378794 ID=Msa1268390-mRNA-1:cds;Parent=Msa1268390-mRNA-1
chr8_3 CDS 1379102 1379239 1379102 ID=Msa1268390-mRNA-1:cds;Parent=Msa1268390-mRNA-1
chr8_3 CDS 1379374 1380384 1379374 ID=Msa1268390-mRNA-1:cds;Parent=Msa1268390-mRNA-1
chr8_3 CDS 1380795 1381010 1380795 ID=Msa1268390-mRNA-1:cds;Parent=Msa1268390-mRNA-1
chr8_3 three_prime_UTR 1381011 1381205 1381011 ID=Msa1268390-mRNA-1:three_prime_utr;Parent=Msa1268390-mRNA-1
Gene Sequence

>Msa1268390

ATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATCGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGTACTGGTCTAGGTCTTTGCATCGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAGGGAACATTGATGAGATTATGTTTGCTTCTTAGTGCACCAATGGATGTCACAGAGCAACATGCTTTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTACAAGGCAATATGGGTAGAATAATAACATCGAAGTGGTTAACCAAAAAAGGGGTGTGCACAATGGAAGCATCTGAATGGAATGGACTAACACAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAATGCATAACAATAACAACTTTGATGCACACTATCCAATAAATCTTGAAGGATTTAAGTCTAAACTACTAAGCATCAAAGATATGAGGAATCCAATTTTTGTCATCGTTGTTGACATTGGTTTGCTTGACTTAAGCACAGATATATGGAAAGAACAACTTAACTTCCTTCACAAGTATTTTGGAAGAGCGAAATTTGTGTGGATGCTGAATCATGACACATCAAATACCATAAAGACGGAGCTTCGTCGGAAAGGACACTTACTAATGGTTAACAAACCTCTATACAAAGCAAAAATGATTCATATTTTGGAAGCTGTTATAAAAGAGAGAAATCTTGAGTTGCAAAAGAAAAACATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCTACTCAATTTGAAGCTGCTACTAGCTCTGATGATTCTGATATATCTGAAATTAGTCAAAAACCAATTTTAAAGTTAACCGATGAAAATGAACATTTGGAAGAAAATAATCCAAGGGAAGAAGAATCTTGTACCTCTGAAGACAACAAAGCTAAAGAAACAAACTTTGCAACACAAGCTTATGATAGGGTGACAAGGTCAAGAAAGGAAGTGAATGATAAGAAATCACTTGAGGGGTTAAGGATTTTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACAATAATGCTTGAAAAAATGGGAGCTGTTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTGGATGCTCTTAATTATATGGTAAGTGCTGAAGATTGTAGAAGAGAGTCTCTCCAGAAGGACAAAAATACAAGATCACAAACAGAAATTTTGACTTGCCATCAATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAGGAAGGAACAGGCAAACACATTCCAATTGTTGCTCTAACAGCACATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTTGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCTTATGGTCTCAACCATTCTCTCACTCACTAAACCAACAACCTAG

Protein sequence

>Msa1268390

MRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPMDVTEQHALNLTDNGLVVLLALQGNMGRIITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSMHNNNNFDAHYPINLEGFKSKLLSIKDMRNPIFVIVVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWMLNHDTSNTIKTELRRKGHLLMVNKPLYKAKMIHILEAVIKERNLELQKKNMKEGDLHEFLEIDSTQFEAATSSDDSDISEISQKPILKLTDENEHLEENNPREEESCTSEDNKAKETNFATQAYDRVTRSRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNYMVSAEDCRRESLQKDKNTRSQTEILTCHQYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTILSLTKPTT*