Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057540 | sp|Q6NMC6|ABIL3_ARATH | 62.997 | 327 | 111 | 5 | 14 | 336 | 1 | 321 | 3.65e-139 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057540 | A0A072VD45 | 98.503 | 334 | 5 | 0 | 3 | 336 | 9 | 342 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0057540 | 0.817348 | 3.455446e-52 | -8.615850e-47 |
| Msa0008040 | Msa0057540 | 0.871815 | 5.126403e-67 | -8.615850e-47 |
| Msa0050660 | Msa0057540 | 0.820942 | 5.254454e-53 | -8.615850e-47 |
| Msa0050700 | Msa0057540 | 0.820605 | 6.279339e-53 | -8.615850e-47 |
| Msa0050790 | Msa0057540 | 0.814167 | 1.768142e-51 | -8.615850e-47 |
| Msa0057540 | Msa0093860 | 0.804443 | 2.154842e-49 | -8.615850e-47 |
| Msa0057540 | Msa0146650 | 0.818524 | 1.874298e-52 | -8.615850e-47 |
| Msa0057540 | Msa0149350 | 0.866406 | 2.917670e-65 | -8.615850e-47 |
| Msa0057540 | Msa0165830 | 0.802696 | 4.963582e-49 | -8.615850e-47 |
| Msa0057540 | Msa0382740 | 0.817678 | 2.912035e-52 | -8.615850e-47 |
| Msa0057540 | Msa0382770 | 0.803616 | 3.202112e-49 | -8.615850e-47 |
| Msa0057540 | Msa0431200 | 0.808477 | 3.038917e-50 | -8.615850e-47 |
| Msa0057540 | Msa0466520 | 0.815721 | 7.995252e-52 | -8.615850e-47 |
| Msa0057540 | Msa0513080 | 0.822418 | 2.393968e-53 | -8.615850e-47 |
| Msa0057540 | Msa0520260 | 0.801183 | 1.015378e-48 | -8.615850e-47 |
| Msa0057540 | Msa0521170 | 0.802510 | 5.422425e-49 | -8.615850e-47 |
| Msa0057540 | Msa0524800 | 0.817958 | 2.516453e-52 | -8.615850e-47 |
| Msa0057540 | Msa0525000 | 0.820306 | 7.354359e-53 | -8.615850e-47 |
| Msa0057540 | Msa0562350 | 0.825249 | 5.195936e-54 | -8.615850e-47 |
| Msa0057540 | Msa0655700 | 0.828708 | 7.735632e-55 | -8.615850e-47 |
| Msa0057540 | Msa0687090 | 0.821882 | 3.187897e-53 | -8.615850e-47 |
| Msa0057540 | Msa0736890 | 0.805472 | 1.313276e-49 | -8.615850e-47 |
| Msa0057540 | Msa0909760 | 0.811345 | 7.334497e-51 | -8.615850e-47 |
| Msa0057540 | Msa1079640 | 0.801311 | 9.559129e-49 | -8.615850e-47 |
| Msa0057540 | Msa1116660 | 0.804051 | 2.600945e-49 | -8.615850e-47 |
| Msa0057540 | Msa1124470 | 0.805527 | 1.279029e-49 | -8.615850e-47 |
| Msa0057540 | Msa1162880 | 0.806434 | 8.243181e-50 | -8.615850e-47 |
| Msa0057540 | Msa1166290 | 0.801809 | 7.556112e-49 | -8.615850e-47 |
| Msa0057540 | Msa1342810 | 0.814093 | 1.836555e-51 | -8.615850e-47 |
| Msa0057540 | Msa1364410 | 0.805652 | 1.203546e-49 | -8.615850e-47 |
| Msa0057540 | Msa1383310 | 0.801927 | 7.145531e-49 | -8.615850e-47 |
| Msa0057540 | Msa1406720 | 0.821713 | 3.487593e-53 | -8.615850e-47 |
| Msa0057540 | Msa1409410 | 0.814786 | 1.290289e-51 | -8.615850e-47 |
| Msa0057540 | Msa1440630 | 0.816691 | 4.853589e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057540 | MtrunA17_Chr1g0146911 | 99.071 | 323 | 3 | 0 | 14 | 336 | 1 | 323 | 0.0 | 663 |
| Msa0057540 | MtrunA17_Chr3g0127011 | 75.229 | 327 | 76 | 3 | 14 | 336 | 1 | 326 | 2.12e-178 | 496 |
| Msa0057540 | MtrunA17_Chr8g0348041 | 52.672 | 131 | 62 | 0 | 26 | 156 | 15 | 145 | 1.21e-41 | 147 |
| Msa0057540 | MtrunA17_Chr7g0275191 | 50.000 | 134 | 65 | 1 | 31 | 162 | 2 | 135 | 3.74e-38 | 137 |
| Msa0057540 | MtrunA17_Chr6g0485851 | 28.926 | 121 | 85 | 1 | 34 | 154 | 19 | 138 | 1.07e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057540 | AT5G24310.1 | 62.997 | 327 | 111 | 5 | 14 | 336 | 1 | 321 | 3.71e-140 | 400 |
| Msa0057540 | AT3G49290.1 | 63.636 | 319 | 105 | 6 | 21 | 336 | 2 | 312 | 1.40e-138 | 395 |
| Msa0057540 | AT3G49290.2 | 63.636 | 319 | 105 | 6 | 21 | 336 | 2 | 312 | 1.40e-138 | 395 |
| Msa0057540 | AT5G24310.4 | 63.438 | 320 | 107 | 5 | 21 | 336 | 2 | 315 | 4.95e-138 | 394 |
| Msa0057540 | AT5G24310.3 | 60.550 | 327 | 105 | 6 | 14 | 336 | 1 | 307 | 6.81e-129 | 371 |
| Msa0057540 | AT5G24310.2 | 66.055 | 218 | 72 | 2 | 21 | 236 | 2 | 219 | 7.76e-98 | 289 |
| Msa0057540 | AT5G42030.1 | 38.079 | 302 | 147 | 5 | 26 | 324 | 14 | 278 | 5.52e-59 | 191 |
| Msa0057540 | AT5G42030.2 | 44.017 | 234 | 107 | 3 | 26 | 256 | 14 | 226 | 3.51e-55 | 183 |
| Msa0057540 | AT5G42030.3 | 46.023 | 176 | 83 | 1 | 26 | 201 | 14 | 177 | 1.50e-45 | 154 |
| Msa0057540 | AT2G46225.3 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 1.71e-38 | 138 |
| Msa0057540 | AT2G46225.1 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 2.35e-38 | 138 |
| Msa0057540 | AT2G46225.2 | 49.618 | 131 | 66 | 0 | 26 | 156 | 12 | 142 | 2.99e-38 | 139 |
| Msa0057540 | AT5G42030.4 | 33.465 | 254 | 129 | 5 | 74 | 324 | 15 | 231 | 2.39e-35 | 129 |
Find 77 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAAACTTCATCATAAT+TGG | 0.201171 | 1_2:-13653754 | None:intergenic |
| ATAAATACTGTGGATCATTT+AGG | 0.221162 | 1_2:+13654105 | Msa0057540:CDS |
| TAACAAGTCACTCACTTTAT+AGG | 0.234312 | 1_2:-13654136 | None:intergenic |
| ATATAACGTTTGTGATGTTT+TGG | 0.268290 | 1_2:-13654598 | None:intergenic |
| CTTATGGTTGCAATATATAA+AGG | 0.284749 | 1_2:-13653136 | None:intergenic |
| ACAATAGTAGTTGAAGAAAA+TGG | 0.289751 | 1_2:-13655894 | None:intergenic |
| ATCTTCCCCATGAATGAAAA+AGG | 0.307980 | 1_2:-13653702 | None:intergenic |
| ACTCTTTCCTTGCATTCTAT+TGG | 0.329751 | 1_2:-13655744 | None:intergenic |
| GTAGTTGATCTACCCGTCTT+TGG | 0.341518 | 1_2:-13655356 | None:intergenic |
| GTGGATCTGTTGCTTGAGTT+TGG | 0.358344 | 1_2:-13655380 | None:intergenic |
| ACCCTTACTCTTGCATTTGA+AGG | 0.367421 | 1_2:-13655410 | None:intergenic |
| AAGATGATTGGCATCACTTC+AGG | 0.368367 | 1_2:+13654829 | Msa0057540:CDS |
| CGACACTTCAAAGGTGTGTT+TGG | 0.368611 | 1_2:+13655822 | Msa0057540:three_prime_UTR |
| TCCTTTCTTGCAGTATCCTT+CGG | 0.371593 | 1_2:+13655541 | Msa0057540:intron |
| GCTCTTTGATGATAGTCTAA+TGG | 0.375978 | 1_2:+13653788 | Msa0057540:CDS |
| AGAAGACGTTTACTCTTACT+AGG | 0.379538 | 1_2:-13655632 | None:intergenic |
| GTCCTTCAAATGCAAGAGTA+AGG | 0.381834 | 1_2:+13655408 | Msa0057540:CDS |
| AGTATTTATAAGAGCTTTGA+CGG | 0.399045 | 1_2:-13654091 | None:intergenic |
| TCAACAAAATCAAAATATAT+AGG | 0.400778 | 1_2:+13654789 | Msa0057540:CDS |
| GAAGATTTACACAAGATCAT+AGG | 0.406687 | 1_2:+13652951 | Msa0057540:five_prime_UTR |
| CAGATTGGTTGAAACATTGA+AGG | 0.425974 | 1_2:+13654062 | Msa0057540:intron |
| TAGACTTGCGCCTGCTAAGT+AGG | 0.434681 | 1_2:-13655661 | None:intergenic |
| TGCAAGCTATTCAATCAAAT+AGG | 0.440167 | 1_2:-13655978 | None:intergenic |
| GAAGACGTTTACTCTTACTA+GGG | 0.455154 | 1_2:-13655631 | None:intergenic |
| GTTTGATTTCTTGTCGGGCA+TGG | 0.462646 | 1_2:+13652987 | Msa0057540:five_prime_UTR |
| TTCTTAAGTCCCTACTTAGC+AGG | 0.464333 | 1_2:+13655651 | Msa0057540:CDS |
| AATGATCCGGTACGCGAAAG+TGG | 0.466249 | 1_2:-13655314 | None:intergenic |
| GAGTGACTTGTTAGATGAAA+AGG | 0.466681 | 1_2:+13654146 | Msa0057540:CDS |
| GCCAATCATCTTCATCATCT+AGG | 0.468564 | 1_2:-13654818 | None:intergenic |
| ACGTTTATCATGTATCGAAC+AGG | 0.471944 | 1_2:+13654194 | Msa0057540:CDS |
| GTGGTCAGCAGCTGCACTTA+TGG | 0.472814 | 1_2:-13653152 | None:intergenic |
| TCTTTACAACCTCAGAGAGT+TGG | 0.476414 | 1_2:+13655117 | Msa0057540:CDS |
| AGGTTTCCACTTTCGCGTAC+CGG | 0.482355 | 1_2:+13655308 | Msa0057540:CDS |
| TGCATTTGAAGGACTTGTGG+TGG | 0.485150 | 1_2:-13655399 | None:intergenic |
| TTGGAAGCCATTCGAGGTAG+AGG | 0.487405 | 1_2:-13653735 | None:intergenic |
| TTCAATCAAATAGGCAAAGC+AGG | 0.495672 | 1_2:-13655969 | None:intergenic |
| TTACTCATAGTTCTAAATTG+TGG | 0.507630 | 1_2:-13653171 | None:intergenic |
| GCTGATTTGCGCGGCTCCGA+AGG | 0.523701 | 1_2:-13655557 | None:intergenic |
| TGACACGTTATACACATACT+TGG | 0.525305 | 1_2:+13655691 | Msa0057540:CDS |
| TGTTGAGTTGGTACCATGCA+AGG | 0.528628 | 1_2:-13654772 | None:intergenic |
| ACTCTCTGAGGTTGTAAAGA+AGG | 0.529000 | 1_2:-13655114 | None:intergenic |
| TCTTGCATTTGAAGGACTTG+TGG | 0.532230 | 1_2:-13655402 | None:intergenic |
| TCTACCCGTCTTTGGTGTTG+TGG | 0.537374 | 1_2:-13655348 | None:intergenic |
| TTCATTCACTTCACCCAACA+TGG | 0.537497 | 1_2:+13655146 | Msa0057540:CDS |
| ACCTAGATGATGAAGATGAT+TGG | 0.546777 | 1_2:+13654817 | Msa0057540:CDS |
| TAGATCCACAACACCAAAGA+CGG | 0.552833 | 1_2:+13655343 | Msa0057540:CDS |
| TAGCAGGCGCAAGTCTAAGA+AGG | 0.559475 | 1_2:+13655667 | Msa0057540:CDS |
| TCAGTTGGGGAGACCTTGCA+TGG | 0.559628 | 1_2:+13654759 | Msa0057540:intron |
| TCATAATTGGAAGCCATTCG+AGG | 0.561383 | 1_2:-13653741 | None:intergenic |
| GTTTACTCTTACTAGGGTGT+TGG | 0.563511 | 1_2:-13655625 | None:intergenic |
| AGACTTGCGCCTGCTAAGTA+GGG | 0.563669 | 1_2:-13655660 | None:intergenic |
| ACACTTGCCAATAGAATGCA+AGG | 0.571373 | 1_2:+13655737 | Msa0057540:three_prime_UTR |
| GGATCTACTTGACAATGATC+CGG | 0.571708 | 1_2:-13655327 | None:intergenic |
| CCTCATGATCCATAAAACCT+TGG | 0.572903 | 1_2:-13654543 | None:intergenic |
| TAGAGAATAAAGACATGCCA+AGG | 0.576912 | 1_2:+13654526 | Msa0057540:intron |
| ATGAAGCACCGACACTTCAA+AGG | 0.578484 | 1_2:+13655813 | Msa0057540:three_prime_UTR |
| ACAAAATGTGGCTGCAACTG+CGG | 0.579244 | 1_2:+13653095 | Msa0057540:five_prime_UTR |
| TAGACTATCATCAAAGAGCA+AGG | 0.589354 | 1_2:-13653784 | None:intergenic |
| CGCATTGAAGCTGATTTGCG+CGG | 0.592705 | 1_2:-13655566 | None:intergenic |
| ATTTAGTACAACATGTGTGT+TGG | 0.593510 | 1_2:+13652927 | Msa0057540:five_prime_UTR |
| GATTGGCATCACTTCAGGAA+TGG | 0.593721 | 1_2:+13654834 | Msa0057540:CDS |
| CAAACACACCTTTGAAGTGT+CGG | 0.595147 | 1_2:-13655821 | None:intergenic |
| AACACAACCTCTACCTCGAA+TGG | 0.597696 | 1_2:+13653728 | Msa0057540:CDS |
| AGCGGACAGTTTCGCCACAC+AGG | 0.598006 | 1_2:+13655288 | Msa0057540:CDS |
| TGAGGTTGTAAAGAAGGTGA+TGG | 0.601446 | 1_2:-13655108 | None:intergenic |
| TCCTTCAAATGCAAGAGTAA+GGG | 0.605270 | 1_2:+13655409 | Msa0057540:CDS |
| CAAAGCTCTTATAAATACTG+TGG | 0.609357 | 1_2:+13654095 | Msa0057540:CDS |
| TTCGATACTGAAACAAAATG+TGG | 0.614629 | 1_2:+13653083 | Msa0057540:five_prime_UTR |
| AGATCCACAACACCAAAGAC+GGG | 0.620662 | 1_2:+13655344 | Msa0057540:CDS |
| AAACGCCAACGTCTACCTCA+AGG | 0.625238 | 1_2:+13654979 | Msa0057540:CDS |
| ATGTATGTGAAATAGAGAAG+CGG | 0.632958 | 1_2:+13655270 | Msa0057540:intron |
| TTGTACCTTGAGGTAGACGT+TGG | 0.633325 | 1_2:-13654984 | None:intergenic |
| GATGAGAAAATAAGAAACAG+AGG | 0.637686 | 1_2:-13656001 | None:intergenic |
| CGCGAAAGTGGAAACCTGTG+TGG | 0.665252 | 1_2:-13655302 | None:intergenic |
| TGATACGACATCAACACATG+TGG | 0.672406 | 1_2:+13655855 | Msa0057540:three_prime_UTR |
| AATCATCTTCATCATCTAGG+TGG | 0.697533 | 1_2:-13654815 | None:intergenic |
| ATAGTTCTAAATTACAAACG+CGG | 0.756645 | 1_2:+13653047 | Msa0057540:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTCTCAAAAATTTAA+GGG | - | chr1_2:13653836-13653855 | None:intergenic | 10.0% |
| !! | TAAAAATTCTCAAAAATTTA+AGG | - | chr1_2:13653837-13653856 | None:intergenic | 10.0% |
| !!! | CTATATCATTTTAATGAAAA+AGG | - | chr1_2:13653031-13653050 | None:intergenic | 15.0% |
| !! | TATTATCACAAATCAAAAAA+GGG | - | chr1_2:13653557-13653576 | None:intergenic | 15.0% |
| !! | ATATTATCACAAATCAAAAA+AGG | - | chr1_2:13653558-13653577 | None:intergenic | 15.0% |
| !!! | AAAAATAAAGAAGAGTATAA+AGG | - | chr1_2:13654016-13654035 | None:intergenic | 15.0% |
| !! | ATGAGTAATGTTAATATAAT+GGG | - | chr1_2:13654697-13654716 | None:intergenic | 15.0% |
| !! | TCAACAAAATCAAAATATAT+AGG | + | chr1_2:13654789-13654808 | Msa0057540:CDS | 15.0% |
| !!! | TTGTATTTTCTTTATCATAG+TGG | + | chr1_2:13653226-13653245 | Msa0057540:intron | 20.0% |
| !!! | TATTTTAGAAGACAGATAAA+GGG | - | chr1_2:13653277-13653296 | None:intergenic | 20.0% |
| !!! | TTATTTTAGAAGACAGATAA+AGG | - | chr1_2:13653278-13653297 | None:intergenic | 20.0% |
| !!! | TTATCTGTCTTCTAAAATAA+TGG | + | chr1_2:13653278-13653297 | Msa0057540:intron | 20.0% |
| !! | AAAAAAAAAAACCTCTTAAG+AGG | - | chr1_2:13653373-13653392 | None:intergenic | 20.0% |
| !!! | TAAATTTTGATTTGTGATAG+AGG | + | chr1_2:13653406-13653425 | Msa0057540:intron | 20.0% |
| !!! | AAATTTTGATTTGTGATAGA+GGG | + | chr1_2:13653407-13653426 | Msa0057540:intron | 20.0% |
| !! | TCAATGTTATTGATAAAAGT+AGG | + | chr1_2:13653657-13653676 | Msa0057540:intron | 20.0% |
| !!! | AATTAACTCACATTTGTTTT+TGG | - | chr1_2:13653976-13653995 | None:intergenic | 20.0% |
| !!! | TTTGTATTTTATTTGCAGAT+TGG | + | chr1_2:13654047-13654066 | Msa0057540:intron | 20.0% |
| !! | GCTTATAACTTAATTGAAAA+CGG | - | chr1_2:13654335-13654354 | None:intergenic | 20.0% |
| !! | CATGAGTAATGTTAATATAA+TGG | - | chr1_2:13654698-13654717 | None:intergenic | 20.0% |
| !!! | ATATTTTGATTTTGTTGAGT+TGG | - | chr1_2:13654787-13654806 | None:intergenic | 20.0% |
| !!! | TTTTTTCATTCCACTTTTAT+AGG | + | chr1_2:13654880-13654899 | Msa0057540:intron | 20.0% |
| !! | AATCATGTTGTTATAGTAAA+GGG | + | chr1_2:13655079-13655098 | Msa0057540:intron | 20.0% |
| !!! | GTAAATATTTTATTCTGAAC+TGG | + | chr1_2:13655233-13655252 | Msa0057540:intron | 20.0% |
| !!! | TCTTTTGTTTGATTTCTTGT+CGG | + | chr1_2:13652981-13653000 | Msa0057540:five_prime_UTR | 25.0% |
| !!! | ATAGTTCTAAATTACAAACG+CGG | + | chr1_2:13653047-13653066 | Msa0057540:five_prime_UTR | 25.0% |
| !!! | GCAATATATAAAGGTTTTAG+AGG | - | chr1_2:13653130-13653149 | None:intergenic | 25.0% |
| ! | CTTATGGTTGCAATATATAA+AGG | - | chr1_2:13653139-13653158 | None:intergenic | 25.0% |
| !!! | TTACTCATAGTTCTAAATTG+TGG | - | chr1_2:13653174-13653193 | None:intergenic | 25.0% |
| !! | GGTTGTTGTTGTTATTAAAT+AGG | + | chr1_2:13653307-13653326 | Msa0057540:intron | 25.0% |
| !! | GCTTTTCATTTTGAACTATT+TGG | + | chr1_2:13653346-13653365 | Msa0057540:intron | 25.0% |
| !!! | AATTTTGATTTGTGATAGAG+GGG | + | chr1_2:13653408-13653427 | Msa0057540:intron | 25.0% |
| ! | AAAAGTAAACAAGATACAGT+TGG | - | chr1_2:13653603-13653622 | None:intergenic | 25.0% |
| ! | CATGAAAACTTCATCATAAT+TGG | - | chr1_2:13653757-13653776 | None:intergenic | 25.0% |
| ! | AAATTTAAGGGATGAATTAC+TGG | - | chr1_2:13653824-13653843 | None:intergenic | 25.0% |
| !!! | CTTTTTTCATCTACATTTCT+AGG | + | chr1_2:13653880-13653899 | Msa0057540:intron | 25.0% |
| !! | AGTATTTATAAGAGCTTTGA+CGG | - | chr1_2:13654094-13654113 | None:intergenic | 25.0% |
| ! | ATAAATACTGTGGATCATTT+AGG | + | chr1_2:13654105-13654124 | Msa0057540:CDS | 25.0% |
| !!! | TTTATTTCCATTAGCTTTTC+GGG | - | chr1_2:13654374-13654393 | None:intergenic | 25.0% |
| !!! | GTTTATTTCCATTAGCTTTT+CGG | - | chr1_2:13654375-13654394 | None:intergenic | 25.0% |
| ! | ATAAACTGAAAAACAGCTTA+TGG | + | chr1_2:13654389-13654408 | Msa0057540:intron | 25.0% |
| ! | GAAAGTAATGTGAAAAACTT+TGG | + | chr1_2:13654433-13654452 | Msa0057540:intron | 25.0% |
| !! | AGCATAATTTTTCCATAATG+TGG | + | chr1_2:13654498-13654517 | Msa0057540:intron | 25.0% |
| !! | ATATAACGTTTGTGATGTTT+TGG | - | chr1_2:13654601-13654620 | None:intergenic | 25.0% |
| ! | AATGTATTTATAAACTTGCC+TGG | - | chr1_2:13654628-13654647 | None:intergenic | 25.0% |
| ! | AGAATTTCAAAATAGAGTTG+AGG | - | chr1_2:13654653-13654672 | None:intergenic | 25.0% |
| ! | TCAATTTCACATATTCAGTT+GGG | + | chr1_2:13654745-13654764 | Msa0057540:intron | 25.0% |
| ! | AAGATTGTATCCTATAAAAG+TGG | - | chr1_2:13654893-13654912 | None:intergenic | 25.0% |
| ! | CAATCATGTTGTTATAGTAA+AGG | + | chr1_2:13655078-13655097 | Msa0057540:intron | 25.0% |
| !!! | TATAGTACCCAAATCTTTTT+TGG | - | chr1_2:13655172-13655191 | None:intergenic | 25.0% |
| ! | ACATTAAAACGTGAATATTG+TGG | + | chr1_2:13655491-13655510 | Msa0057540:intron | 25.0% |
| ! | AAAGAACAAAAACTACGTAA+AGG | + | chr1_2:13655773-13655792 | Msa0057540:three_prime_UTR | 25.0% |
| ! | AAGAACAAAAACTACGTAAA+GGG | + | chr1_2:13655774-13655793 | Msa0057540:three_prime_UTR | 25.0% |
| ! | ACAATAGTAGTTGAAGAAAA+TGG | - | chr1_2:13655897-13655916 | None:intergenic | 25.0% |
| ATTTAGTACAACATGTGTGT+TGG | + | chr1_2:13652927-13652946 | Msa0057540:five_prime_UTR | 30.0% | |
| GAAGATTTACACAAGATCAT+AGG | + | chr1_2:13652951-13652970 | Msa0057540:five_prime_UTR | 30.0% | |
| !! | CTTTTGTTTGATTTCTTGTC+GGG | + | chr1_2:13652982-13653001 | Msa0057540:five_prime_UTR | 30.0% |
| TTCGATACTGAAACAAAATG+TGG | + | chr1_2:13653083-13653102 | Msa0057540:five_prime_UTR | 30.0% | |
| !! | CTTCTAAAATAATGGTTGAC+TGG | + | chr1_2:13653286-13653305 | Msa0057540:intron | 30.0% |
| !!! | CATTTGTTTTTGGTCATCAT+TGG | - | chr1_2:13653966-13653985 | None:intergenic | 30.0% |
| CAAAGCTCTTATAAATACTG+TGG | + | chr1_2:13654095-13654114 | Msa0057540:CDS | 30.0% | |
| TAACAAGTCACTCACTTTAT+AGG | - | chr1_2:13654139-13654158 | None:intergenic | 30.0% | |
| TACTTTCTTAAGTGCCTTAT+TGG | - | chr1_2:13654420-13654439 | None:intergenic | 30.0% | |
| AACTTTGGTGAATTTCCATT+TGG | + | chr1_2:13654448-13654467 | Msa0057540:intron | 30.0% | |
| ! | AAACGTAACAGTTTTCCAAA+TGG | - | chr1_2:13654466-13654485 | None:intergenic | 30.0% |
| TTCTCTAATGTACCACATTA+TGG | - | chr1_2:13654513-13654532 | None:intergenic | 30.0% | |
| CTCAATTTCACATATTCAGT+TGG | + | chr1_2:13654744-13654763 | Msa0057540:intron | 30.0% | |
| CAATTTCACATATTCAGTTG+GGG | + | chr1_2:13654746-13654765 | Msa0057540:intron | 30.0% | |
| TGTGCAGTTTAATTGAGAAT+TGG | - | chr1_2:13655036-13655055 | None:intergenic | 30.0% | |
| !!! | AAATCTTTTTTGGCCATGTT+GGG | - | chr1_2:13655162-13655181 | None:intergenic | 30.0% |
| AACATGGCCAAAAAAGATTT+GGG | + | chr1_2:13655162-13655181 | Msa0057540:CDS | 30.0% | |
| ATGTATGTGAAATAGAGAAG+CGG | + | chr1_2:13655270-13655289 | Msa0057540:intron | 30.0% | |
| ! | AAAAACTACGTAAAGGGTTT+TGG | + | chr1_2:13655780-13655799 | Msa0057540:three_prime_UTR | 30.0% |
| ! | AAAACTACGTAAAGGGTTTT+GGG | + | chr1_2:13655781-13655800 | Msa0057540:three_prime_UTR | 30.0% |
| !!! | GTGTCGTTTTAGTGTTATAT+AGG | + | chr1_2:13655937-13655956 | Msa0057540:three_prime_UTR | 30.0% |
| TGCAAGCTATTCAATCAAAT+AGG | - | chr1_2:13655981-13656000 | None:intergenic | 30.0% | |
| GATGAGAAAATAAGAAACAG+AGG | - | chr1_2:13656004-13656023 | None:intergenic | 30.0% | |
| TAGAAGACAGATAAAGGGAA+AGG | - | chr1_2:13653272-13653291 | None:intergenic | 35.0% | |
| AACTATTTGGACCTCTTAAG+AGG | + | chr1_2:13653359-13653378 | Msa0057540:intron | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | + | chr1_2:13653479-13653498 | Msa0057540:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | + | chr1_2:13653483-13653502 | Msa0057540:intron | 35.0% | |
| TGAATGAAAAAGGTGGAAGA+AGG | - | chr1_2:13653695-13653714 | None:intergenic | 35.0% | |
| !! | TCTTCCACCTTTTTCATTCA+TGG | + | chr1_2:13653695-13653714 | Msa0057540:CDS | 35.0% |
| !! | CTTCCACCTTTTTCATTCAT+GGG | + | chr1_2:13653696-13653715 | Msa0057540:CDS | 35.0% |
| !! | TTCCACCTTTTTCATTCATG+GGG | + | chr1_2:13653697-13653716 | Msa0057540:CDS | 35.0% |
| ATCTTCCCCATGAATGAAAA+AGG | - | chr1_2:13653705-13653724 | None:intergenic | 35.0% | |
| TAGACTATCATCAAAGAGCA+AGG | - | chr1_2:13653787-13653806 | None:intergenic | 35.0% | |
| ! | GCTCTTTGATGATAGTCTAA+TGG | + | chr1_2:13653788-13653807 | Msa0057540:CDS | 35.0% |
| ! | CAGATTGGTTGAAACATTGA+AGG | + | chr1_2:13654062-13654081 | Msa0057540:intron | 35.0% |
| !! | GAGTGACTTGTTAGATGAAA+AGG | + | chr1_2:13654146-13654165 | Msa0057540:CDS | 35.0% |
| ! | GAAAAGGTCACTGAAGTTTT+TGG | + | chr1_2:13654162-13654181 | Msa0057540:CDS | 35.0% |
| ACGTTTATCATGTATCGAAC+AGG | + | chr1_2:13654194-13654213 | Msa0057540:CDS | 35.0% | |
| TAGAGAATAAAGACATGCCA+AGG | + | chr1_2:13654526-13654545 | Msa0057540:intron | 35.0% | |
| ! | AAAGACATGCCAAGGTTTTA+TGG | + | chr1_2:13654534-13654553 | Msa0057540:CDS | 35.0% |
| !! | CAAGGTTTTATGGATCATGA+GGG | + | chr1_2:13654544-13654563 | Msa0057540:CDS | 35.0% |
| !! | AAGGTTTTATGGATCATGAG+GGG | + | chr1_2:13654545-13654564 | Msa0057540:CDS | 35.0% |
| ! | CACAAACGTTATATTTTGCC+AGG | + | chr1_2:13654607-13654626 | Msa0057540:CDS | 35.0% |
| AATCATCTTCATCATCTAGG+TGG | - | chr1_2:13654818-13654837 | None:intergenic | 35.0% | |
| ACCTAGATGATGAAGATGAT+TGG | + | chr1_2:13654817-13654836 | Msa0057540:CDS | 35.0% | |
| !! | CTGATTTTGTTTGTACCTTG+AGG | - | chr1_2:13654997-13655016 | None:intergenic | 35.0% |
| !!! | CAAATCTTTTTTGGCCATGT+TGG | - | chr1_2:13655163-13655182 | None:intergenic | 35.0% |
| CAACATGGCCAAAAAAGATT+TGG | + | chr1_2:13655161-13655180 | Msa0057540:CDS | 35.0% | |
| TCCTTCAAATGCAAGAGTAA+GGG | + | chr1_2:13655409-13655428 | Msa0057540:CDS | 35.0% | |
| GAAGACGTTTACTCTTACTA+GGG | - | chr1_2:13655634-13655653 | None:intergenic | 35.0% | |
| AGAAGACGTTTACTCTTACT+AGG | - | chr1_2:13655635-13655654 | None:intergenic | 35.0% | |
| TGACACGTTATACACATACT+TGG | + | chr1_2:13655691-13655710 | Msa0057540:CDS | 35.0% | |
| ACTCTTTCCTTGCATTCTAT+TGG | - | chr1_2:13655747-13655766 | None:intergenic | 35.0% | |
| TTCAATCAAATAGGCAAAGC+AGG | - | chr1_2:13655972-13655991 | None:intergenic | 35.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr1_2:13653453-13653472 | Msa0057540:intron | 40.0% | |
| GCATACAATACACCAAATGG+TGG | + | chr1_2:13653482-13653501 | Msa0057540:intron | 40.0% | |
| CAAATCAAAAAAGGGCAACC+CGG | - | chr1_2:13653549-13653568 | None:intergenic | 40.0% | |
| TTCCCCATGAATGAAAAAGG+TGG | - | chr1_2:13653702-13653721 | None:intergenic | 40.0% | |
| TCATAATTGGAAGCCATTCG+AGG | - | chr1_2:13653744-13653763 | None:intergenic | 40.0% | |
| AAGCTATCCCGAAAAGCTAA+TGG | + | chr1_2:13654364-13654383 | Msa0057540:intron | 40.0% | |
| AGCTTATGGACTTGCCAATA+AGG | + | chr1_2:13654403-13654422 | Msa0057540:intron | 40.0% | |
| CCTCATGATCCATAAAACCT+TGG | - | chr1_2:13654546-13654565 | None:intergenic | 40.0% | |
| !! | CCAAGGTTTTATGGATCATG+AGG | + | chr1_2:13654543-13654562 | Msa0057540:CDS | 40.0% |
| GCCAATCATCTTCATCATCT+AGG | - | chr1_2:13654821-13654840 | None:intergenic | 40.0% | |
| AAGATGATTGGCATCACTTC+AGG | + | chr1_2:13654829-13654848 | Msa0057540:CDS | 40.0% | |
| TGAGGTTGTAAAGAAGGTGA+TGG | - | chr1_2:13655111-13655130 | None:intergenic | 40.0% | |
| !! | ACTCTCTGAGGTTGTAAAGA+AGG | - | chr1_2:13655117-13655136 | None:intergenic | 40.0% |
| TCTTTACAACCTCAGAGAGT+TGG | + | chr1_2:13655117-13655136 | Msa0057540:CDS | 40.0% | |
| TTCATTCACTTCACCCAACA+TGG | + | chr1_2:13655146-13655165 | Msa0057540:CDS | 40.0% | |
| GGATCTACTTGACAATGATC+CGG | - | chr1_2:13655330-13655349 | None:intergenic | 40.0% | |
| TAGATCCACAACACCAAAGA+CGG | + | chr1_2:13655343-13655362 | Msa0057540:CDS | 40.0% | |
| TCTTGCATTTGAAGGACTTG+TGG | - | chr1_2:13655405-13655424 | None:intergenic | 40.0% | |
| GTCCTTCAAATGCAAGAGTA+AGG | + | chr1_2:13655408-13655427 | Msa0057540:CDS | 40.0% | |
| ACCCTTACTCTTGCATTTGA+AGG | - | chr1_2:13655413-13655432 | None:intergenic | 40.0% | |
| AATGCAAGAGTAAGGGTAAG+TGG | + | chr1_2:13655416-13655435 | Msa0057540:intron | 40.0% | |
| TCCTTTCTTGCAGTATCCTT+CGG | + | chr1_2:13655541-13655560 | Msa0057540:intron | 40.0% | |
| GTTTACTCTTACTAGGGTGT+TGG | - | chr1_2:13655628-13655647 | None:intergenic | 40.0% | |
| TTCTTAAGTCCCTACTTAGC+AGG | + | chr1_2:13655651-13655670 | Msa0057540:CDS | 40.0% | |
| ACACTTGCCAATAGAATGCA+AGG | + | chr1_2:13655737-13655756 | Msa0057540:three_prime_UTR | 40.0% | |
| !! | CAAACACACCTTTGAAGTGT+CGG | - | chr1_2:13655824-13655843 | None:intergenic | 40.0% |
| TGATACGACATCAACACATG+TGG | + | chr1_2:13655855-13655874 | Msa0057540:three_prime_UTR | 40.0% | |
| ! | GTTTGATTTCTTGTCGGGCA+TGG | + | chr1_2:13652987-13653006 | Msa0057540:five_prime_UTR | 45.0% |
| ACAAAATGTGGCTGCAACTG+CGG | + | chr1_2:13653095-13653114 | Msa0057540:five_prime_UTR | 45.0% | |
| TTGTGATAGAGGGGTAACCT+TGG | + | chr1_2:13653417-13653436 | Msa0057540:intron | 45.0% | |
| CAACTTTACAAGTTGCGCCA+AGG | - | chr1_2:13653437-13653456 | None:intergenic | 45.0% | |
| AACACAACCTCTACCTCGAA+TGG | + | chr1_2:13653728-13653747 | Msa0057540:CDS | 45.0% | |
| !! | TGTTGAGTTGGTACCATGCA+AGG | - | chr1_2:13654775-13654794 | None:intergenic | 45.0% |
| GATTGGCATCACTTCAGGAA+TGG | + | chr1_2:13654834-13654853 | Msa0057540:CDS | 45.0% | |
| TTGTACCTTGAGGTAGACGT+TGG | - | chr1_2:13654987-13655006 | None:intergenic | 45.0% | |
| GAAAAAGCTCCAACTCTCTG+AGG | - | chr1_2:13655129-13655148 | None:intergenic | 45.0% | |
| AGATCCACAACACCAAAGAC+GGG | + | chr1_2:13655344-13655363 | Msa0057540:CDS | 45.0% | |
| GTAGTTGATCTACCCGTCTT+TGG | - | chr1_2:13655359-13655378 | None:intergenic | 45.0% | |
| ! | GTGGATCTGTTGCTTGAGTT+TGG | - | chr1_2:13655383-13655402 | None:intergenic | 45.0% |
| TGCATTTGAAGGACTTGTGG+TGG | - | chr1_2:13655402-13655421 | None:intergenic | 45.0% | |
| TCCGAAGGATACTGCAAGAA+AGG | - | chr1_2:13655545-13655564 | None:intergenic | 45.0% | |
| !! | ATGAAGCACCGACACTTCAA+AGG | + | chr1_2:13655813-13655832 | Msa0057540:three_prime_UTR | 45.0% |
| ! | CGACACTTCAAAGGTGTGTT+TGG | + | chr1_2:13655822-13655841 | Msa0057540:three_prime_UTR | 45.0% |
| CATATGCAGGGTCCAGGAAA+GGG | - | chr1_2:13653510-13653529 | None:intergenic | 50.0% | |
| TTTCCTGGACCCTGCATATG+CGG | + | chr1_2:13653510-13653529 | Msa0057540:intron | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | - | chr1_2:13653522-13653541 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | - | chr1_2:13653523-13653542 | None:intergenic | 50.0% | |
| ! | ATGCGGGAGCTTTAGTACAC+CGG | + | chr1_2:13653527-13653546 | Msa0057540:intron | 50.0% |
| TTGGAAGCCATTCGAGGTAG+AGG | - | chr1_2:13653738-13653757 | None:intergenic | 50.0% | |
| AAACGCCAACGTCTACCTCA+AGG | + | chr1_2:13654979-13654998 | Msa0057540:CDS | 50.0% | |
| AGGTTTCCACTTTCGCGTAC+CGG | + | chr1_2:13655308-13655327 | Msa0057540:CDS | 50.0% | |
| AATGATCCGGTACGCGAAAG+TGG | - | chr1_2:13655317-13655336 | None:intergenic | 50.0% | |
| !! | TCTACCCGTCTTTGGTGTTG+TGG | - | chr1_2:13655351-13655370 | None:intergenic | 50.0% |
| !! | CGCATTGAAGCTGATTTGCG+CGG | - | chr1_2:13655569-13655588 | None:intergenic | 50.0% |
| AGACTTGCGCCTGCTAAGTA+GGG | - | chr1_2:13655663-13655682 | None:intergenic | 50.0% | |
| TAGACTTGCGCCTGCTAAGT+AGG | - | chr1_2:13655664-13655683 | None:intergenic | 50.0% | |
| TAGCAGGCGCAAGTCTAAGA+AGG | + | chr1_2:13655667-13655686 | Msa0057540:CDS | 50.0% | |
| GTGGTCAGCAGCTGCACTTA+TGG | - | chr1_2:13653155-13653174 | None:intergenic | 55.0% | |
| CAGGAAAGGGTCCCACCATT+TGG | - | chr1_2:13653497-13653516 | None:intergenic | 55.0% | |
| ! | CAAATGGTGGGACCCTTTCC+TGG | + | chr1_2:13653495-13653514 | Msa0057540:intron | 55.0% |
| GCATATGCAGGGTCCAGGAA+AGG | - | chr1_2:13653511-13653530 | None:intergenic | 55.0% | |
| TTCCTGGACCCTGCATATGC+GGG | + | chr1_2:13653511-13653530 | Msa0057540:intron | 55.0% | |
| ! | TGCGGGAGCTTTAGTACACC+GGG | + | chr1_2:13653528-13653547 | Msa0057540:intron | 55.0% |
| TCAGTTGGGGAGACCTTGCA+TGG | + | chr1_2:13654759-13654778 | Msa0057540:intron | 55.0% | |
| CGCGAAAGTGGAAACCTGTG+TGG | - | chr1_2:13655305-13655324 | None:intergenic | 55.0% | |
| AGCGGACAGTTTCGCCACAC+AGG | + | chr1_2:13655288-13655307 | Msa0057540:CDS | 60.0% | |
| CTCCCGCATATGCAGGGTCC+AGG | - | chr1_2:13653516-13653535 | None:intergenic | 65.0% | |
| !! | GCTGATTTGCGCGGCTCCGA+AGG | - | chr1_2:13655560-13655579 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 13652904 | 13656144 | 13652904 | ID=Msa0057540;Name=Msa0057540 |
| chr1_2 | mRNA | 13652904 | 13656144 | 13652904 | ID=Msa0057540-mRNA-1;Parent=Msa0057540;Name=Msa0057540-mRNA-1;_AED=0.16;_eAED=0.16;_QI=282|1|1|1|0.88|0.8|10|420|336 |
| chr1_2 | exon | 13652904 | 13653189 | 13652904 | ID=Msa0057540-mRNA-1:exon:5390;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13653679 | 13653809 | 13653679 | ID=Msa0057540-mRNA-1:exon:5391;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13653902 | 13653984 | 13653902 | ID=Msa0057540-mRNA-1:exon:5392;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13654065 | 13654215 | 13654065 | ID=Msa0057540-mRNA-1:exon:5393;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13654529 | 13654628 | 13654529 | ID=Msa0057540-mRNA-1:exon:5394;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13654763 | 13654855 | 13654763 | ID=Msa0057540-mRNA-1:exon:5395;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13654958 | 13655000 | 13654958 | ID=Msa0057540-mRNA-1:exon:5396;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13655095 | 13655183 | 13655095 | ID=Msa0057540-mRNA-1:exon:5397;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13655285 | 13655430 | 13655285 | ID=Msa0057540-mRNA-1:exon:5398;Parent=Msa0057540-mRNA-1 |
| chr1_2 | exon | 13655554 | 13656144 | 13655554 | ID=Msa0057540-mRNA-1:exon:5399;Parent=Msa0057540-mRNA-1 |
| chr1_2 | five_prime_UTR | 13652904 | 13653185 | 13652904 | ID=Msa0057540-mRNA-1:five_prime_utr;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13653186 | 13653189 | 13653186 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13653679 | 13653809 | 13653679 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13653902 | 13653984 | 13653902 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13654065 | 13654215 | 13654065 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13654529 | 13654628 | 13654529 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13654763 | 13654855 | 13654763 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13654958 | 13655000 | 13654958 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13655095 | 13655183 | 13655095 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13655285 | 13655430 | 13655285 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | CDS | 13655554 | 13655724 | 13655554 | ID=Msa0057540-mRNA-1:cds;Parent=Msa0057540-mRNA-1 |
| chr1_2 | three_prime_UTR | 13655725 | 13656144 | 13655725 | ID=Msa0057540-mRNA-1:three_prime_utr;Parent=Msa0057540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
