AlfalfaGEDB | Msa0555730

M. sativa cultivar zhongmu-4 / Msa0555730

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555730	XP_039689313.1	98.000	150	3	0	1	150	513	662	4.29e-98	306

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555730	sp\|Q39086\|SD17_ARATH	48.077	156	75	2	1	150	688	843	1.26e-40	147

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555730	A0A396IB06	98.000	150	3	0	1	150	623	772	9.41e-98	307

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0185640	Msa0555730	-0.804991	1.655879e-49	-8.615850e-47
Msa0235190	Msa0555730	0.800854	1.185403e-48	-8.615850e-47
Msa0273570	Msa0555730	0.803863	2.845706e-49	-8.615850e-47
Msa0352000	Msa0555730	0.804293	2.315946e-49	-8.615850e-47
Msa0389280	Msa0555730	0.826253	3.002718e-54	-8.615850e-47
Msa0389310	Msa0555730	0.934387	4.372239e-96	-8.615850e-47
Msa0458700	Msa0555730	0.810998	8.722995e-51	-8.615850e-47
Msa0533290	Msa0555730	0.812650	3.810355e-51	-8.615850e-47
Msa0540070	Msa0555730	0.812661	3.789041e-51	-8.615850e-47
Msa0555730	Msa0629890	0.803372	3.597307e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555730	MtrunA17_Chr4g0042381	98.000	150	3	0	1	150	623	772	1.81e-101	307
Msa0555730	MtrunA17_Chr4g0042391	95.333	150	7	0	1	150	623	772	1.39e-90	278
Msa0555730	MtrunA17_Chr4g0042351	88.000	150	18	0	1	150	623	772	2.82e-81	254
Msa0555730	MtrunA17_Chr4g0042431	62.667	150	56	0	1	150	1	150	1.05e-63	191
Msa0555730	MtrunA17_Chr4g0042341	61.333	150	53	2	1	150	693	837	6.80e-58	192
Msa0555730	MtrunA17_Chr4g0042361	61.333	150	56	2	1	150	709	856	9.12e-57	189
Msa0555730	MtrunA17_Chr4g0042401	62.914	151	55	1	1	150	673	823	1.15e-55	186
Msa0555730	MtrunA17_Chr4g0042441	59.603	151	60	1	1	150	670	820	3.70e-54	182
Msa0555730	MtrunA17_Chr3g0092301	53.333	150	68	2	1	150	100	247	3.80e-51	163
Msa0555730	MtrunA17_Chr8g0361441	57.616	151	61	3	1	150	676	824	1.75e-50	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0555730	AT1G65790.1	48.077	156	75	2	1	150	688	843	1.28e-41	147
Msa0555730	AT4G23180.1	51.695	118	57	0	1	118	517	634	3.07e-41	145
Msa0555730	AT1G11330.2	42.000	150	87	0	1	150	693	842	1.33e-40	144
Msa0555730	AT1G11330.1	42.000	150	87	0	1	150	691	840	1.36e-40	144
Msa0555730	AT4G23200.1	42.581	155	84	2	1	150	505	659	3.88e-40	142
Msa0555730	AT1G11350.1	44.000	150	84	0	1	150	681	830	2.13e-39	141
Msa0555730	AT4G23150.1	52.066	121	58	0	1	121	505	625	7.92e-39	139
Msa0555730	AT4G23230.1	53.390	118	55	0	1	118	506	623	1.15e-38	138
Msa0555730	AT4G21380.1	55.372	121	51	1	1	118	695	815	1.25e-38	139
Msa0555730	AT4G23220.1	48.739	119	60	1	1	118	505	623	1.39e-38	138

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Find 42 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGGTATAATTCCATG+GGG	0.743328	4_1:-53761590	Msa0555730:three_prime_UTR
AAATTCAAGCTCAAGTGGGA+AGG	0.598004	4_1:-53761694	Msa0555730:CDS
AAGCAAATTCAAGCTCAAGT+GGG	0.659163	4_1:-53761698	Msa0555730:CDS
AATACCAAAGCTGAAAACGT+CGG	0.690477	4_1:+53762128	None:intergenic
AATAGTGACTTTGTTCCCCA+TGG	0.515436	4_1:+53761575	None:intergenic
ACCGATACATATTTCAGTAA+AGG	0.518159	4_1:-53761608	Msa0555730:three_prime_UTR
AGAATCACATCAGCCATGGT+AGG	0.625241	4_1:+53761795	None:intergenic
AGTGCTCGGTGAAAATCAAT+AGG	0.393901	4_1:-53761633	Msa0555730:exon
ATGTGTGCAACAATATCCAG+AGG	0.693017	4_1:-53761823	Msa0555730:CDS
CATTAGAATCACATCAGCCA+TGG	0.617577	4_1:+53761791	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCTGTGATTCCTTCAATT+TGG	+	chr4_1:53761610-53761629	None:intergenic	30.0%
GAATCACAGATAGAATTGTT+GGG	-	chr4_1:53761618-53761637	Msa0555730:three_prime_UTR	30.0%
CTGATGTGATTCTAATGTTA+GGG	-	chr4_1:53762141-53762160	Msa0555730:CDS	30.0%
ACCGATACATATTTCAGTAA+AGG	-	chr4_1:53762318-53762337	Msa0555730:five_prime_UTR	30.0%
GATACATATTTCAGTAAAGG+AGG	-	chr4_1:53762321-53762340	Msa0555730:five_prime_UTR	30.0%
TATCTGTGATTCCTTCAATT+TGG	+	chr4_1:53761610-53761629	None:intergenic	30.0%
GAATCACAGATAGAATTGTT+GGG	-	chr4_1:53761618-53761637	Msa0555730:three_prime_UTR	30.0%
CTGATGTGATTCTAATGTTA+GGG	-	chr4_1:53762141-53762160	Msa0555730:CDS	30.0%
ACCGATACATATTTCAGTAA+AGG	-	chr4_1:53762318-53762337	Msa0555730:five_prime_UTR	30.0%
GATACATATTTCAGTAAAGG+AGG	-	chr4_1:53762321-53762340	Msa0555730:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	53761560	53762388	53761560	ID=Msa0555730;Name=Msa0555730
chr4_1	mRNA	53761560	53762388	53761560	ID=Msa0555730-mRNA-1;Parent=Msa0555730;Name=Msa0555730-mRNA-1;_AED=0.46;_eAED=0.46;_QI=93\|1\|1\|1\|0.5\|0.33\|3\|84\|150
chr4_1	exon	53761560	53761952	53761560	ID=Msa0555730-mRNA-1:exon:15684;Parent=Msa0555730-mRNA-1
chr4_1	exon	53762050	53762200	53762050	ID=Msa0555730-mRNA-1:exon:15683;Parent=Msa0555730-mRNA-1
chr4_1	exon	53762303	53762388	53762303	ID=Msa0555730-mRNA-1:exon:15682;Parent=Msa0555730-mRNA-1
chr4_1	five_prime_UTR	53762303	53762388	53762303	ID=Msa0555730-mRNA-1:five_prime_utr;Parent=Msa0555730-mRNA-1
chr4_1	five_prime_UTR	53762194	53762200	53762194	ID=Msa0555730-mRNA-1:five_prime_utr;Parent=Msa0555730-mRNA-1
chr4_1	CDS	53762050	53762193	53762050	ID=Msa0555730-mRNA-1:cds;Parent=Msa0555730-mRNA-1
chr4_1	CDS	53761644	53761952	53761644	ID=Msa0555730-mRNA-1:cds;Parent=Msa0555730-mRNA-1
chr4_1	three_prime_UTR	53761560	53761643	53761560	ID=Msa0555730-mRNA-1:three_prime_utr;Parent=Msa0555730-mRNA-1

Gene Sequence

>Msa0555730

ATGGCACCAGAGTATGCTATTGATGGACAATTTTCCGTGAAATCCGACGTTTTCAGCTTTGGTATTTTACTGTTAGAGATTATATGTGGGAAGAAAAATCGAGTGTGTCATCGTACAACGCAAACTCTTAACCTTGTTGCTTCTGCATGGACATTCTGGAAACATGGAAGACCTTTACAGATAATTGACTCAAACATCGTGGATTCATGCATTGTATCTGAAGTATCGCGTTGCATCCACGTTGGACTCTTATGTGTGCAACAATATCCAGAGGATAGGCCTACCATGGCTGATGTGATTCTAATGTTAGGGAGTGAGATGATGATATTAGATGAGCCTAAGGAGCCAGGTTTTACTACGAGGAAAGAATCTGCTGAAGCAAATTCAAGCTCAAGTGGGAAGGATACAAGTTCAAACTACGAAATGACGATGAGCTCTTTTAGTGCTCGGTGA

Protein sequence

>Msa0555730

MAPEYAIDGQFSVKSDVFSFGILLLEIICGKKNRVCHRTTQTLNLVASAWTFWKHGRPLQIIDSNIVDSCIVSEVSRCIHVGLLCVQQYPEDRPTMADVILMLGSEMMILDEPKEPGFTTRKESAEANSSSSGKDTSSNYEMTMSSFSAR*