AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1184050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184050 MtrunA17_Chr8g0335161 96.618 207 7 0 2 208 263 469 1.84e-146 416
Msa1184050 MtrunA17_Chr8g0335141 90.821 207 19 0 2 208 265 471 3.97e-136 389
Msa1184050 MtrunA17_Chr6g0459311 80.676 207 40 0 2 208 268 474 1.52e-119 347
Msa1184050 MtrunA17_Chr6g0486251 79.803 203 41 0 2 204 261 463 5.65e-116 338
Msa1184050 MtrunA17_Chr6g0486201 79.803 203 41 0 2 204 261 463 5.65e-116 338
Msa1184050 MtrunA17_Chr8g0361371 66.507 209 64 2 2 204 261 469 3.92e-94 283
Msa1184050 MtrunA17_Chr7g0232311 60.891 202 76 2 3 202 260 460 2.87e-84 257
Msa1184050 MtrunA17_Chr8g0336731 58.252 206 85 1 3 208 289 493 1.42e-83 256
Msa1184050 MtrunA17_Chr7g0232341 57.971 207 85 2 2 207 263 468 3.02e-83 254
Msa1184050 MtrunA17_Chr8g0334831 61.009 218 70 3 2 204 260 477 6.05e-83 254
Msa1184050 MtrunA17_Chr8g0336741 58.252 206 85 1 3 208 270 474 9.53e-83 253
Msa1184050 MtrunA17_Chr1g0153461 58.454 207 84 2 3 208 10 215 6.11e-82 243
Msa1184050 MtrunA17_Chr7g0232391 57.971 207 86 1 2 208 263 468 8.92e-82 251
Msa1184050 MtrunA17_Chr8g0339441 60.190 211 79 3 2 208 223 432 1.67e-81 249
Msa1184050 MtrunA17_Chr1g0153451 57.971 207 85 2 3 208 261 466 1.77e-81 250
Msa1184050 MtrunA17_Chr8g0339601 56.872 211 86 2 2 208 124 333 2.41e-81 245
Msa1184050 MtrunA17_Chr8g0339451 57.346 211 85 2 2 208 257 466 2.76e-81 249
Msa1184050 MtrunA17_Chr7g0232401 62.136 206 74 3 2 205 264 467 3.16e-81 249
Msa1184050 MtrunA17_Chr6g0449931 61.722 209 76 3 3 208 263 470 4.09e-81 249
Msa1184050 MtrunA17_Chr7g0232411 56.039 207 90 1 2 208 263 468 2.61e-80 247
Msa1184050 MtrunA17_Chr8g0336651 60.680 206 80 1 3 208 263 467 2.97e-80 259
Msa1184050 MtrunA17_Chr8g0336651 58.571 210 82 3 3 208 1038 1246 5.23e-75 245
Msa1184050 MtrunA17_Chr8g0336651 51.942 206 68 2 3 208 603 777 7.23e-59 199
Msa1184050 MtrunA17_Chr7g0232331 56.585 205 87 2 2 205 263 466 3.31e-79 244
Msa1184050 MtrunA17_Chr8g0334861 55.392 204 88 2 3 204 260 462 5.00e-78 241
Msa1184050 MtrunA17_Chr8g0373301 56.938 209 82 3 2 207 265 468 4.16e-77 239
Msa1184050 MtrunA17_Chr8g0339461 53.555 211 93 2 2 208 265 474 5.69e-76 236
Msa1184050 MtrunA17_Chr8g0334851 58.333 204 83 2 2 204 266 468 7.18e-76 236
Msa1184050 MtrunA17_Chr8g0347281 55.392 204 88 2 3 204 269 471 1.19e-75 235
Msa1184050 MtrunA17_Chr8g0347271 54.412 204 90 2 3 204 270 472 5.83e-75 233
Msa1184050 MtrunA17_Chr7g0275511 54.327 208 92 3 2 207 271 477 2.36e-74 232
Msa1184050 MtrunA17_Chr8g0339631 54.545 209 91 3 2 208 265 471 3.05e-73 229
Msa1184050 MtrunA17_Chr8g0336691 58.654 208 83 2 3 208 270 476 1.27e-71 236
Msa1184050 MtrunA17_Chr8g0336691 57.692 208 85 3 3 208 1176 1382 4.61e-71 234
Msa1184050 MtrunA17_Chr8g0336691 50.971 206 74 2 3 208 737 915 1.56e-60 204
Msa1184050 MtrunA17_Chr5g0403641 48.598 214 101 4 3 207 295 508 3.00e-63 204
Msa1184050 MtrunA17_Chr8g0370941 50.459 218 90 5 3 202 268 485 9.49e-63 202
Msa1184050 MtrunA17_Chr3g0079731 49.505 202 99 1 3 201 275 476 2.24e-57 188
Msa1184050 MtrunA17_Chr6g0462521 47.030 202 96 3 2 202 256 447 4.11e-52 174
Msa1184050 MtrunA17_Chr6g0462531 47.525 202 95 3 2 202 270 461 7.84e-52 173
Msa1184050 MtrunA17_Chr7g0232351 63.248 117 43 0 2 118 262 378 5.27e-51 169
Msa1184050 MtrunA17_Chr6g0462551 47.000 200 97 2 2 201 270 460 4.95e-50 169
Msa1184050 MtrunA17_Chr3g0079711 48.663 187 83 3 23 201 3 184 5.16e-50 160
Msa1184050 MtrunA17_Chr4g0044511 44.444 207 99 3 2 201 303 500 3.04e-49 167
Msa1184050 MtrunA17_Chr8g0366391 44.608 204 97 2 6 205 286 477 1.32e-48 165
Msa1184050 MtrunA17_Chr6g0462541 44.500 200 102 2 2 201 269 459 6.28e-48 163
Msa1184050 MtrunA17_Chr4g0066151 41.395 215 102 6 2 201 270 475 8.03e-47 160
Msa1184050 MtrunA17_Chr8g0337381 60.630 127 47 2 78 204 1 124 1.53e-46 150
Msa1184050 MtrunA17_Chr4g0066281 43.062 209 103 5 2 201 261 462 1.61e-45 157
Msa1184050 MtrunA17_Chr4g0066221 42.654 211 97 6 6 201 275 476 1.99e-45 157
Msa1184050 MtrunA17_Chr4g0014061 39.908 218 107 5 2 207 269 474 1.37e-44 154
Msa1184050 MtrunA17_Chr6g0463861 39.810 211 111 5 2 201 264 469 1.74e-44 154
Msa1184050 MtrunA17_Chr6g0462571 42.000 200 107 2 2 201 267 457 2.02e-44 154
Msa1184050 MtrunA17_Chr7g0243781 42.723 213 98 6 2 201 270 471 2.42e-44 154
Msa1184050 MtrunA17_Chr5g0448521 39.352 216 114 5 3 207 260 469 3.69e-44 153
Msa1184050 MtrunA17_Chr5g0442541 39.524 210 110 5 3 201 258 461 5.16e-44 152
Msa1184050 MtrunA17_Chr7g0243871 43.750 208 95 6 2 198 269 465 1.47e-43 152
Msa1184050 MtrunA17_Chr7g0265141 40.488 205 102 3 1 194 279 474 3.26e-43 150
Msa1184050 MtrunA17_Chr2g0302991 41.063 207 103 5 7 205 267 462 5.73e-43 150
Msa1184050 MtrunA17_Chr7g0243771 43.721 215 99 5 2 205 272 475 5.92e-43 150
Msa1184050 MtrunA17_Chr2g0302961 39.336 211 109 5 3 205 266 465 9.92e-43 149
Msa1184050 MtrunA17_Chr5g0442491 40.845 213 115 5 3 207 267 476 1.29e-42 149
Msa1184050 MtrunA17_Chr8g0374901 41.232 211 108 5 2 201 269 474 2.21e-42 149
Msa1184050 MtrunA17_Chr5g0442561 39.352 216 114 5 3 207 265 474 2.34e-42 148
Msa1184050 MtrunA17_Chr4g0044521 40.000 210 107 5 2 201 262 462 2.94e-42 148
Msa1184050 MtrunA17_Chr7g0243801 43.256 215 100 5 2 205 273 476 3.10e-42 148
Msa1184050 MtrunA17_Chr8g0374971 39.810 211 111 4 2 201 271 476 3.56e-42 148
Msa1184050 MtrunA17_Chr5g0442581 41.346 208 109 4 3 201 269 472 4.79e-42 148
Msa1184050 MtrunA17_Chr6g0463851 40.000 215 113 6 2 205 273 482 5.63e-42 147
Msa1184050 MtrunA17_Chr6g0464871 40.777 206 104 5 3 208 282 469 9.25e-42 146
Msa1184050 MtrunA17_Chr7g0249961 38.350 206 109 4 2 207 74 261 1.20e-41 142
Msa1184050 MtrunA17_Chr4g0044501 41.546 207 99 4 6 205 284 475 3.14e-41 145
Msa1184050 MtrunA17_Chr4g0060511 40.465 215 106 4 2 205 284 487 3.62e-41 145
Msa1184050 MtrunA17_Chr7g0243631 39.252 214 111 3 2 205 282 486 7.92e-41 144
Msa1184050 MtrunA17_Chr8g0374941 39.535 215 106 6 2 201 1208 1413 9.70e-41 147
Msa1184050 MtrunA17_Chr8g0374941 37.745 204 103 6 2 190 270 464 9.97e-38 138
Msa1184050 MtrunA17_Chr8g0374941 37.500 224 114 6 2 206 735 951 3.20e-37 137
Msa1184050 MtrunA17_Chr7g0265051 41.038 212 97 5 2 199 281 478 1.07e-40 144
Msa1184050 MtrunA17_Chr7g0249981 38.835 206 108 4 2 207 281 468 1.67e-40 144
Msa1184050 MtrunA17_Chr4g0066131 37.915 211 115 5 2 201 265 470 2.03e-40 143
Msa1184050 MtrunA17_Chr5g0420801 41.089 202 109 3 7 208 270 461 2.24e-40 143
Msa1184050 MtrunA17_Chr5g0442521 39.048 210 112 5 3 201 267 471 2.69e-40 143
Msa1184050 MtrunA17_Chr5g0426401 41.148 209 97 8 2 207 124 309 2.82e-40 139
Msa1184050 MtrunA17_Chr5g0442511 38.164 207 117 4 3 201 286 489 3.50e-40 143
Msa1184050 MtrunA17_Chr6g0464881 37.255 204 110 4 2 205 269 454 3.86e-40 142
Msa1184050 MtrunA17_Chr8g0350881 39.810 211 111 4 2 201 271 476 4.55e-40 142
Msa1184050 MtrunA17_Chr5g0414321 38.835 206 109 3 2 207 265 453 5.28e-40 142
Msa1184050 MtrunA17_Chr7g0243681 41.063 207 99 4 7 201 280 475 5.32e-40 142
Msa1184050 MtrunA17_Chr5g0442601 38.426 216 116 5 3 207 668 877 5.67e-40 145
Msa1184050 MtrunA17_Chr5g0442601 46.528 144 69 3 2 141 194 333 1.10e-32 124
Msa1184050 MtrunA17_Chr7g0265041 42.381 210 98 5 5 201 285 484 6.99e-40 142
Msa1184050 MtrunA17_Chr7g0243711 40.000 215 107 4 2 205 113 316 8.20e-40 139
Msa1184050 MtrunA17_Chr8g0355221 40.930 215 111 4 2 208 283 489 8.22e-40 142
Msa1184050 MtrunA17_Chr7g0265101 39.623 212 100 5 2 199 283 480 8.72e-40 142
Msa1184050 MtrunA17_Chr4g0053321 39.216 204 116 5 2 205 284 479 8.74e-40 142
Msa1184050 MtrunA17_Chr7g0265151 38.725 204 105 4 3 195 279 473 1.25e-39 141
Msa1184050 MtrunA17_Chr7g0275681 40.580 207 101 5 5 201 282 476 1.74e-39 140
Msa1184050 MtrunA17_Chr4g0066171 37.559 213 117 5 2 205 271 476 1.78e-39 140
Msa1184050 MtrunA17_Chr4g0066261 38.350 206 112 4 6 201 277 477 1.86e-39 140
Msa1184050 MtrunA17_Chr4g0053501 39.216 204 116 5 2 205 269 464 1.94e-39 141
Msa1184050 MtrunA17_Chr6g0464841 40.394 203 103 5 3 205 270 454 2.11e-39 140
Msa1184050 MtrunA17_Chr4g0066201 37.089 213 118 4 2 205 269 474 2.32e-39 140
Msa1184050 MtrunA17_Chr2g0329111 43.333 180 92 4 2 179 272 443 3.05e-39 140
Msa1184050 MtrunA17_Chr1g0173121 39.500 200 116 3 3 201 263 458 4.09e-39 139
Msa1184050 MtrunA17_Chr7g0243931 40.000 215 107 4 2 205 287 490 4.16e-39 140
Msa1184050 MtrunA17_Chr5g0414331 37.864 206 111 3 2 207 267 455 5.45e-39 139
Msa1184050 MtrunA17_Chr2g0294931 38.785 214 116 4 2 205 273 481 7.44e-39 139
Msa1184050 MtrunA17_Chr8g0369341 42.564 195 102 3 7 201 280 464 8.14e-39 139
Msa1184050 MtrunA17_Chr7g0235051 41.346 208 100 5 2 198 250 446 1.03e-38 138
Msa1184050 MtrunA17_Chr5g0440421 41.969 193 102 4 6 195 294 479 1.17e-38 139
Msa1184050 MtrunA17_Chr6g0464861 39.409 203 105 4 3 205 269 453 1.48e-38 138
Msa1184050 MtrunA17_Chr5g0419771 40.000 205 102 5 2 194 306 501 1.49e-38 139
Msa1184050 MtrunA17_Chr7g0249931 38.384 198 103 5 2 198 297 476 2.03e-38 138
Msa1184050 MtrunA17_Chr6g0464921 37.563 197 106 3 2 198 269 448 2.40e-38 137
Msa1184050 MtrunA17_Chr5g0426431 41.872 203 95 6 2 201 291 473 3.35e-38 137
Msa1184050 MtrunA17_Chr7g0243951 40.930 215 104 5 2 205 281 483 3.82e-38 137
Msa1184050 MtrunA17_Chr3g0112771 41.753 194 98 4 8 201 269 447 3.93e-38 137
Msa1184050 MtrunA17_Chr6g0454151 39.000 200 105 5 2 201 291 473 4.45e-38 137
Msa1184050 MtrunA17_Chr1g0159551 38.500 200 118 2 3 201 260 455 4.86e-38 136
Msa1184050 MtrunA17_Chr7g0218311 38.318 214 117 4 2 205 275 483 4.90e-38 137
Msa1184050 MtrunA17_Chr4g0011051 39.806 206 101 5 2 195 283 477 5.05e-38 137
Msa1184050 MtrunA17_Chr2g0294941 38.756 209 105 7 2 196 171 370 7.98e-38 134
Msa1184050 MtrunA17_Chr5g0429681 41.053 190 96 5 3 187 306 484 8.96e-38 136
Msa1184050 MtrunA17_Chr7g0217881 36.923 195 106 4 7 201 280 457 1.18e-37 135
Msa1184050 MtrunA17_Chr7g0243911 42.051 195 89 5 2 185 27 208 2.00e-37 129
Msa1184050 MtrunA17_Chr3g0122001 42.289 201 108 6 2 201 755 948 2.01e-37 137
Msa1184050 MtrunA17_Chr3g0122001 41.294 201 111 5 2 201 275 469 4.36e-37 136
Msa1184050 MtrunA17_Chr8g0382021 40.099 202 115 3 3 201 286 484 2.17e-37 135
Msa1184050 MtrunA17_Chr7g0243851 40.566 212 100 6 7 205 244 442 2.23e-37 135
Msa1184050 MtrunA17_Chr2g0294921 38.318 214 117 4 2 205 422 630 2.64e-37 136
Msa1184050 MtrunA17_Chr3g0121991 41.500 200 109 6 2 200 348 540 2.83e-37 135
Msa1184050 MtrunA17_Chr1g0207981 38.660 194 106 4 5 198 285 465 3.55e-37 134
Msa1184050 MtrunA17_Chr3g0118721 37.056 197 108 4 5 201 105 285 4.99e-37 130
Msa1184050 MtrunA17_Chr5g0401851 37.850 214 116 3 2 207 281 485 5.87e-37 134
Msa1184050 MtrunA17_Chr3g0078841 38.342 193 102 4 2 194 291 466 6.08e-37 134
Msa1184050 MtrunA17_Chr6g0453951 36.041 197 109 4 5 201 343 522 8.60e-37 134
Msa1184050 MtrunA17_Chr1g0165701 38.249 217 112 4 2 208 282 486 2.23e-36 132
Msa1184050 MtrunA17_Chr8g0377921 40.099 202 105 4 2 201 272 459 2.40e-36 132
Msa1184050 MtrunA17_Chr4g0044481 41.463 164 84 1 5 168 273 424 2.44e-36 131
Msa1184050 MtrunA17_Chr4g0050341 39.698 199 104 3 7 205 308 490 2.92e-36 132
Msa1184050 MtrunA17_Chr5g0428081 37.383 214 119 4 2 205 271 479 3.28e-36 132
Msa1184050 MtrunA17_Chr1g0179901 37.561 205 107 5 2 194 287 482 3.28e-36 132
Msa1184050 MtrunA17_Chr4g0032331 40.796 201 103 4 2 202 262 446 4.64e-36 131
Msa1184050 MtrunA17_Chr5g0419761 40.777 206 103 6 7 201 284 481 4.97e-36 132
Msa1184050 MtrunA17_Chr2g0278711 39.801 201 107 4 2 202 287 473 5.41e-36 131
Msa1184050 MtrunA17_Chr7g0218811 40.796 201 96 7 3 201 266 445 5.87e-36 130
Msa1184050 MtrunA17_Chr8g0380531 39.216 204 109 3 2 205 269 457 6.70e-36 130
Msa1184050 MtrunA17_Chr7g0243861 41.667 216 102 5 2 205 284 487 6.72e-36 131
Msa1184050 MtrunA17_Chr1g0207861 37.198 207 119 4 2 207 274 470 9.09e-36 130
Msa1184050 MtrunA17_Chr6g0454261 38.071 197 105 5 2 198 293 472 9.68e-36 130
Msa1184050 MtrunA17_Chr8g0359821 37.000 200 109 3 2 201 291 473 1.25e-35 130
Msa1184050 MtrunA17_Chr3g0092641 38.916 203 101 6 2 201 291 473 1.57e-35 130
Msa1184050 MtrunA17_Chr6g0454121 35.500 200 112 4 2 201 292 474 2.38e-35 129
Msa1184050 MtrunA17_Chr8g0365811 36.318 201 121 4 2 201 759 953 2.66e-35 131
Msa1184050 MtrunA17_Chr8g0365811 40.588 170 94 4 2 170 277 440 3.39e-33 125
Msa1184050 MtrunA17_Chr1g0207931 37.313 201 115 4 2 201 303 493 2.98e-35 130
Msa1184050 MtrunA17_Chr5g0401721 35.644 202 115 5 2 201 278 466 2.99e-35 129
Msa1184050 MtrunA17_Chr6g0454221 36.000 200 111 5 2 201 44 226 3.28e-35 126
Msa1184050 MtrunA17_Chr3g0098111 36.232 207 121 4 2 207 275 471 3.79e-35 129
Msa1184050 MtrunA17_Chr6g0454341 35.500 200 112 4 2 201 291 473 3.88e-35 129
Msa1184050 MtrunA17_Chr7g0243761 37.931 203 91 5 2 184 280 467 4.21e-35 129
Msa1184050 MtrunA17_Chr1g0161351 37.811 201 114 4 2 201 303 493 4.72e-35 129
Msa1184050 MtrunA17_Chr6g0454201 37.306 193 104 4 2 194 294 469 5.13e-35 129
Msa1184050 MtrunA17_Chr3g0118771 36.585 205 112 5 5 207 304 492 5.89e-35 129
Msa1184050 MtrunA17_Chr5g0429711 38.424 203 103 6 3 201 273 457 6.79e-35 128
Msa1184050 MtrunA17_Chr4g0072761 38.776 196 100 4 6 201 273 448 6.98e-35 128
Msa1184050 MtrunA17_Chr7g0250001 35.266 207 116 5 2 208 262 450 9.81e-35 127
Msa1184050 MtrunA17_Chr3g0118691 36.548 197 109 4 5 201 298 478 1.01e-34 128
Msa1184050 MtrunA17_Chr6g0454321 36.898 187 101 5 2 188 291 460 1.15e-34 129
Msa1184050 MtrunA17_Chr8g0374931 36.946 203 113 4 2 194 273 470 1.19e-34 128
Msa1184050 MtrunA17_Chr6g0454271 36.816 201 102 4 2 198 100 279 1.21e-34 124
Msa1184050 MtrunA17_Chr6g0454131 37.000 200 109 5 2 201 292 474 1.30e-34 127
Msa1184050 MtrunA17_Chr7g0218831 40.331 181 88 6 3 181 256 418 2.83e-34 126
Msa1184050 MtrunA17_Chr1g0207951 36.318 201 109 4 2 201 922 1104 3.00e-34 128
Msa1184050 MtrunA17_Chr1g0207951 33.000 200 114 3 2 201 387 566 4.76e-33 125
Msa1184050 MtrunA17_Chr6g0454331 35.500 200 112 4 2 201 292 474 3.50e-34 126
Msa1184050 MtrunA17_Chr3g0118701 35.533 197 111 4 5 201 298 478 3.76e-34 126
Msa1184050 MtrunA17_Chr3g0118671 35.122 205 115 5 5 207 289 477 3.90e-34 126
Msa1184050 MtrunA17_Chr6g0454211 36.041 197 109 4 2 198 580 759 4.49e-34 128
Msa1184050 MtrunA17_Chr6g0454211 39.130 92 29 3 27 118 172 236 4.33e-13 67.4
Msa1184050 MtrunA17_Chr5g0410941 35.484 217 125 5 2 208 281 492 5.53e-34 126
Msa1184050 MtrunA17_Chr5g0412111 39.500 200 102 6 2 201 277 457 6.69e-34 125
Msa1184050 MtrunA17_Chr3g0118711 35.533 197 111 4 5 201 296 476 9.50e-34 125
Msa1184050 MtrunA17_Chr7g0265111 37.264 212 110 5 2 201 311 511 9.53e-34 126
Msa1184050 MtrunA17_Chr8g0361411 39.901 203 102 6 7 206 269 454 1.04e-33 125
Msa1184050 MtrunA17_Chr6g0454191 37.306 193 104 4 2 194 294 469 1.11e-33 125
Msa1184050 MtrunA17_Chr6g0454401 35.500 200 112 4 2 201 294 476 1.12e-33 125
Msa1184050 MtrunA17_Chr7g0218821 40.102 197 95 8 4 198 268 443 1.41e-33 124
Msa1184050 MtrunA17_Chr4g0072771 37.436 195 102 4 7 201 287 461 1.49e-33 124
Msa1184050 MtrunA17_Chr7g0243611 43.114 167 74 4 2 158 141 296 1.81e-33 121
Msa1184050 MtrunA17_Chr6g0454181 36.269 193 106 4 2 194 293 468 2.66e-33 124
Msa1184050 MtrunA17_Chr3g0112761 37.129 202 111 5 5 205 263 449 2.90e-33 124
Msa1184050 MtrunA17_Chr6g0454301 35.000 200 113 4 2 201 544 726 3.23e-33 125
Msa1184050 MtrunA17_Chr6g0454301 36.041 197 109 4 2 198 43 222 3.93e-32 122
Msa1184050 MtrunA17_Chr8g0367221 37.569 181 103 2 2 182 1551 1721 3.28e-33 125
Msa1184050 MtrunA17_Chr8g0367221 35.556 180 106 2 3 182 275 444 3.96e-30 117
Msa1184050 MtrunA17_Chr8g0367221 36.111 180 105 2 3 182 1062 1231 9.06e-30 115
Msa1184050 MtrunA17_Chr6g0454141 36.000 200 111 4 2 201 293 475 3.36e-33 124
Msa1184050 MtrunA17_Chr6g0454291 36.788 193 105 5 2 194 290 465 3.46e-33 124
Msa1184050 MtrunA17_Chr5g0416741 38.318 214 110 4 2 205 282 483 5.11e-33 123
Msa1184050 MtrunA17_Chr6g0454361 35.533 197 110 4 5 201 297 476 7.42e-33 123
Msa1184050 MtrunA17_Chr5g0423981 34.500 200 114 4 2 201 258 440 7.55e-33 122
Msa1184050 MtrunA17_Chr8g0377941 39.303 201 97 6 2 198 275 454 8.29e-33 122
Msa1184050 MtrunA17_Chr4g0042931 38.647 207 116 5 3 207 268 465 9.65e-33 122
Msa1184050 MtrunA17_Chr7g0218841 39.779 181 89 6 3 181 257 419 1.55e-32 121
Msa1184050 MtrunA17_Chr8g0336331 34.500 200 114 4 2 201 290 472 1.56e-32 122
Msa1184050 MtrunA17_Chr6g0453961 35.000 200 113 4 2 201 303 485 1.68e-32 122
Msa1184050 MtrunA17_Chr6g0454371 33.333 183 105 4 19 201 1 166 2.13e-32 115
Msa1184050 MtrunA17_Chr1g0207971 33.500 200 114 4 2 201 269 449 2.89e-32 121
Msa1184050 MtrunA17_Chr4g0042891 39.698 199 98 6 3 199 271 449 3.31e-32 121
Msa1184050 MtrunA17_Chr8g0355011 38.068 176 92 4 5 180 178 336 4.03e-32 119
Msa1184050 MtrunA17_Chr7g0243811 45.775 142 64 3 2 141 245 375 4.67e-32 119
Msa1184050 MtrunA17_Chr5g0412101 37.438 203 102 5 2 201 286 466 5.97e-32 120
Msa1184050 MtrunA17_Chr5g0393591 34.500 200 103 4 2 201 260 431 6.14e-32 120
Msa1184050 MtrunA17_Chr3g0118661 40.373 161 79 4 5 165 296 439 1.14e-31 119
Msa1184050 MtrunA17_Chr2g0278721 39.106 179 95 3 2 180 788 952 1.26e-31 121
Msa1184050 MtrunA17_Chr2g0278721 39.106 179 95 3 2 180 277 441 2.12e-29 114
Msa1184050 MtrunA17_Chr8g0336321 40.449 178 92 3 3 179 275 439 1.48e-31 119
Msa1184050 MtrunA17_Chr5g0427571 40.107 187 96 4 3 188 109 280 1.86e-31 116
Msa1184050 MtrunA17_Chr5g0409591 36.453 203 116 5 3 201 281 474 2.23e-31 119
Msa1184050 MtrunA17_Chr6g0463891 35.814 215 115 4 2 205 282 484 2.62e-31 119
Msa1184050 MtrunA17_Chr5g0431441 36.765 204 103 5 2 201 280 461 3.03e-31 118
Msa1184050 MtrunA17_Chr6g0452771 36.410 195 107 4 7 201 298 475 4.06e-31 118
Msa1184050 MtrunA17_Chr5g0412131 37.500 200 106 6 2 201 285 465 1.24e-30 117
Msa1184050 MtrunA17_Chr3g0106251 34.872 195 103 5 3 194 109 282 1.74e-30 114
Msa1184050 MtrunA17_Chr8g0336251 39.888 178 93 3 3 179 275 439 1.94e-30 116
Msa1184050 MtrunA17_Chr3g0092031 36.313 179 100 3 2 180 9 173 4.36e-30 110
Msa1184050 MtrunA17_Chr6g0454351 32.787 183 106 3 19 201 295 460 4.77e-30 115
Msa1184050 MtrunA17_Chr7g0218791 37.288 177 95 4 4 180 265 425 1.52e-29 113
Msa1184050 MtrunA17_Chr1g0207831 32.353 204 114 4 2 201 276 459 2.13e-29 113
Msa1184050 MtrunA17_Chr6g0454171 36.571 175 94 5 27 201 148 305 2.15e-29 111
Msa1184050 MtrunA17_Chr7g0241781 39.548 177 83 5 7 181 251 405 2.31e-29 113
Msa1184050 MtrunA17_Chr2g0307961 37.879 198 105 5 8 205 289 468 3.55e-29 112
Msa1184050 MtrunA17_Chr4g0066141 37.821 156 86 3 57 201 192 347 5.32e-29 110
Msa1184050 MtrunA17_Chr4g0069611 36.313 179 100 2 2 180 272 436 1.05e-28 111
Msa1184050 MtrunA17_Chr5g0432731 33.990 203 112 5 2 201 109 292 1.18e-28 108
Msa1184050 MtrunA17_Chr5g0431361 33.981 206 108 5 2 201 266 449 1.65e-28 110
Msa1184050 MtrunA17_Chr4g0029151 36.158 177 103 3 4 179 270 437 3.17e-28 110
Msa1184050 MtrunA17_Chr2g0278741 38.547 179 96 3 2 180 359 523 6.73e-28 110
Msa1184050 MtrunA17_Chr3g0106231 33.846 195 105 5 3 194 267 440 6.81e-28 109
Msa1184050 MtrunA17_Chr4g0029131 36.158 177 103 3 4 179 262 429 8.81e-28 110
Msa1184050 MtrunA17_Chr8g0336261 35.333 150 80 4 19 168 1 133 2.67e-27 100
Msa1184050 MtrunA17_Chr1g0196851 35.838 173 103 2 7 179 305 469 1.23e-26 106
Msa1184050 MtrunA17_Chr4g0039881 35.754 179 101 3 2 180 249 413 1.83e-26 105
Msa1184050 MtrunA17_Chr2g0283041 35.152 165 97 2 7 171 266 420 1.98e-26 105
Msa1184050 MtrunA17_Chr6g0466831 34.921 189 107 4 2 190 275 447 3.31e-26 104
Msa1184050 MtrunA17_Chr7g0241801 37.288 177 87 5 7 181 251 405 4.42e-26 103
Msa1184050 MtrunA17_Chr4g0040691 37.791 172 94 4 7 178 269 427 7.09e-26 103
Msa1184050 MtrunA17_Chr2g0302851 35.196 179 102 3 2 180 273 437 9.97e-26 103
Msa1184050 MtrunA17_Chr5g0416821 35.981 214 103 6 2 205 284 473 1.61e-25 102
Msa1184050 MtrunA17_Chr5g0431401 32.683 205 112 5 2 201 261 444 4.30e-25 101
Msa1184050 MtrunA17_Chr6g0482061 33.871 186 112 6 3 185 285 462 5.87e-25 101
Msa1184050 MtrunA17_Chr6g0464091 35.754 179 101 3 2 180 282 446 6.99e-25 100
Msa1184050 MtrunA17_Chr8g0357361 39.552 134 68 2 8 141 129 249 1.25e-24 97.4
Msa1184050 MtrunA17_Chr5g0431421 33.171 205 111 5 2 201 261 444 1.38e-24 100
Msa1184050 MtrunA17_Chr6g0466841 36.310 168 93 3 2 169 275 428 2.37e-24 99.4
Msa1184050 MtrunA17_Chr3g0118751 32.039 206 91 4 5 207 289 448 5.28e-24 98.6
Msa1184050 MtrunA17_Chr5g0431371 33.495 206 109 6 2 201 261 444 1.24e-23 97.4
Msa1184050 MtrunA17_Chr7g0231631 34.579 214 104 5 2 205 72 259 2.60e-23 94.4
Msa1184050 MtrunA17_Chr4g0040711 34.682 173 100 3 6 178 268 427 9.14e-23 95.1
Msa1184050 MtrunA17_Chr5g0448551 36.842 171 85 6 2 165 265 419 4.71e-22 93.2
Msa1184050 MtrunA17_Chr6g0454231 37.391 115 67 1 80 194 97 206 9.27e-22 92.4
Msa1184050 MtrunA17_Chr1g0207881 35.099 151 88 4 54 201 237 380 1.33e-21 91.3
Msa1184050 MtrunA17_Chr2g0321331 32.418 182 94 4 1 182 88 240 2.55e-20 86.3
Msa1184050 MtrunA17_Chr5g0431431 35.404 161 75 5 2 161 211 343 4.68e-20 86.7
Msa1184050 MtrunA17_Chr7g0243731 47.887 71 37 0 72 142 2 72 5.88e-20 80.5
Msa1184050 MtrunA17_Chr6g0454251 38.983 118 60 3 2 119 290 395 1.22e-19 85.9
Msa1184050 MtrunA17_Chr2g0319761 34.078 179 105 3 5 180 265 433 5.97e-19 84.3
Msa1184050 MtrunA17_Chr2g0319791 35.260 173 99 4 7 178 267 427 1.62e-18 82.8
Msa1184050 MtrunA17_Chr6g0449971 54.545 77 34 1 128 204 1 76 3.00e-18 76.3
Msa1184050 MtrunA17_Chr2g0319751 35.838 173 98 4 7 178 744 904 4.72e-18 82.0
Msa1184050 MtrunA17_Chr2g0319751 35.897 117 72 2 63 178 289 403 2.74e-16 77.0
Msa1184050 MtrunA17_Chr8g0334841 67.925 53 17 0 2 54 93 145 2.96e-17 75.9
Msa1184050 MtrunA17_Chr2g0319731 33.520 179 102 4 7 182 284 448 3.84e-17 79.0
Msa1184050 MtrunA17_Chr2g0319801 34.637 179 100 4 7 182 267 431 4.14e-17 79.0
Msa1184050 MtrunA17_Chr4g0029161 31.638 177 83 5 4 179 262 401 9.96e-15 72.0
Msa1184050 MtrunA17_Chr6g0454391 46.269 67 31 2 95 161 13 74 3.53e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184050 AT4G01070.1 55.392 204 89 2 2 204 264 466 4.96e-76 236
Msa1184050 AT1G01420.2 55.392 204 88 3 2 204 267 468 2.15e-72 227
Msa1184050 AT1G01420.1 55.392 204 88 3 2 204 264 465 2.82e-72 227
Msa1184050 AT4G36770.1 54.787 188 80 3 3 187 260 445 6.47e-67 212
Msa1184050 AT1G01390.1 54.902 204 90 2 2 204 264 466 1.84e-66 212
Msa1184050 AT1G01390.2 54.902 204 90 2 2 204 281 483 1.91e-66 212
Msa1184050 AT5G26310.1 47.418 213 103 3 3 208 260 470 4.69e-64 206
Msa1184050 AT3G50740.1 50.000 206 97 2 3 202 265 470 6.52e-63 203
Msa1184050 AT5G66690.1 50.769 195 89 2 3 192 260 452 3.90e-61 198
Msa1184050 AT2G18560.1 50.500 200 91 3 3 198 174 369 1.39e-56 184
Msa1184050 AT2G18570.1 48.309 207 101 3 3 206 264 467 1.84e-56 186
Msa1184050 AT3G16520.3 45.500 200 99 4 2 201 266 455 1.32e-52 175
Msa1184050 AT2G15490.1 42.308 208 110 3 2 206 281 481 7.18e-49 166
Msa1184050 AT2G15490.3 43.269 208 105 4 2 206 281 478 1.29e-48 165
Msa1184050 AT3G16520.2 44.444 189 95 3 2 190 266 444 1.62e-48 164
Msa1184050 AT3G16520.1 44.444 189 95 3 2 190 266 444 1.75e-48 164
Msa1184050 AT1G07260.1 43.500 200 96 5 3 198 278 464 9.30e-48 163
Msa1184050 AT2G15480.1 40.865 208 110 3 2 206 284 481 8.45e-47 160
Msa1184050 AT1G07250.1 42.718 206 103 4 3 205 279 472 2.26e-46 159
Msa1184050 AT2G15480.2 39.908 218 108 4 2 206 284 491 4.05e-46 159
Msa1184050 AT3G21790.1 42.029 207 108 4 3 201 272 474 7.63e-46 158
Msa1184050 AT4G15260.1 40.385 208 112 4 2 201 147 350 1.06e-44 152
Msa1184050 AT5G14860.1 43.284 201 97 3 8 205 289 475 1.83e-44 154
Msa1184050 AT3G21800.1 40.196 204 110 4 3 198 269 468 2.64e-44 154
Msa1184050 AT2G16890.2 44.279 201 94 3 8 205 282 467 2.75e-44 154
Msa1184050 AT3G53160.1 43.333 210 100 4 2 201 278 478 3.76e-44 154
Msa1184050 AT2G43820.1 39.130 207 107 4 2 207 260 448 2.53e-43 150
Msa1184050 AT4G34131.1 41.176 204 104 4 2 201 284 475 3.21e-43 151
Msa1184050 AT3G21750.1 41.589 214 100 5 3 201 261 464 7.88e-43 150
Msa1184050 AT2G29740.1 42.714 199 99 5 3 198 281 467 9.36e-43 150
Msa1184050 AT1G05675.1 43.781 201 96 3 2 202 266 449 1.69e-42 149
Msa1184050 AT1G05680.1 41.791 201 100 3 2 202 266 449 1.75e-42 149
Msa1184050 AT4G15280.1 38.208 212 108 5 3 201 268 469 5.92e-42 147
Msa1184050 AT2G36780.1 40.952 210 105 4 2 201 284 484 8.11e-42 147
Msa1184050 AT4G34138.1 42.640 197 96 4 2 194 284 467 8.62e-42 147
Msa1184050 AT4G15280.2 38.208 212 108 5 3 201 300 501 8.96e-42 147
Msa1184050 AT2G31790.1 39.109 202 104 4 2 201 268 452 1.17e-41 146
Msa1184050 AT2G31750.1 38.350 206 108 4 2 205 266 454 1.32e-41 146
Msa1184050 AT2G36760.1 42.157 204 99 4 2 195 284 478 1.57e-41 147
Msa1184050 AT2G36770.1 41.706 211 102 6 2 201 284 484 1.64e-41 147
Msa1184050 AT2G31750.2 38.350 206 108 4 2 205 266 454 2.28e-41 146
Msa1184050 AT2G29750.1 40.796 201 101 6 2 198 280 466 3.13e-41 145
Msa1184050 AT1G07240.1 40.594 202 101 4 3 197 278 467 3.39e-41 145
Msa1184050 AT2G36800.1 40.952 210 105 4 2 201 283 483 4.20e-41 145
Msa1184050 AT3G53150.1 41.818 220 100 5 2 201 294 505 5.27e-41 145
Msa1184050 AT2G29730.1 38.916 203 106 5 2 201 271 458 7.74e-41 144
Msa1184050 AT2G29710.1 40.000 200 103 6 2 198 270 455 2.96e-40 143
Msa1184050 AT4G34135.1 41.951 205 102 2 2 201 285 477 3.58e-40 143
Msa1184050 AT2G43840.2 37.255 204 111 2 3 206 261 447 3.99e-40 142
Msa1184050 AT2G43840.1 37.255 204 111 2 3 206 261 447 4.03e-40 142
Msa1184050 AT3G21780.1 41.627 209 99 5 3 198 263 461 5.39e-40 142
Msa1184050 AT2G36750.1 38.863 211 108 4 2 201 279 479 6.23e-40 142
Msa1184050 AT3G21760.1 41.232 211 97 6 3 198 275 473 1.10e-39 142
Msa1184050 AT1G22340.1 40.488 205 105 5 2 205 293 481 1.86e-38 138
Msa1184050 AT1G24100.1 39.487 195 102 2 7 201 276 454 3.41e-38 137
Msa1184050 AT5G05880.1 38.350 206 112 4 3 208 261 451 1.25e-37 135
Msa1184050 AT2G16890.3 46.203 158 68 2 8 163 282 424 1.35e-37 135
Msa1184050 AT1G10400.1 42.857 203 95 5 7 207 281 464 4.45e-37 134
Msa1184050 AT2G23260.1 38.265 196 106 1 3 198 266 446 1.68e-36 132
Msa1184050 AT2G36790.1 40.000 210 107 4 2 201 283 483 2.09e-36 133
Msa1184050 AT1G22360.1 38.806 201 105 4 6 205 294 477 6.28e-36 131
Msa1184050 AT5G12890.1 41.848 184 98 4 2 182 279 456 2.63e-35 130
Msa1184050 AT1G22400.1 37.379 206 109 5 2 205 294 481 7.40e-35 129
Msa1184050 AT1G78270.1 39.306 173 89 3 7 179 297 453 2.18e-34 127
Msa1184050 AT5G59580.1 36.538 208 115 5 3 208 260 452 3.62e-34 126
Msa1184050 AT3G55710.1 38.350 206 112 5 3 208 267 457 3.93e-34 126
Msa1184050 AT1G05530.1 36.765 204 123 4 2 205 257 454 4.16e-34 126
Msa1184050 AT2G23250.1 37.186 199 110 1 3 201 248 431 4.29e-34 126
Msa1184050 AT3G46680.1 37.186 199 110 4 3 201 262 445 5.71e-34 125
Msa1184050 AT3G11340.1 35.922 206 117 4 3 208 257 447 1.22e-33 125
Msa1184050 AT3G55700.1 37.500 208 111 6 3 208 263 453 1.90e-33 124
Msa1184050 AT1G22380.1 38.798 183 95 3 6 188 297 462 2.54e-33 124
Msa1184050 AT1G05560.1 36.500 200 121 4 2 201 254 447 4.04e-33 124
Msa1184050 AT5G03490.1 38.000 200 103 5 4 202 280 459 4.28e-33 124
Msa1184050 AT2G36970.1 33.171 205 123 3 3 207 282 472 4.92e-33 124
Msa1184050 AT5G05870.1 37.688 199 109 4 7 205 271 454 5.09e-33 123
Msa1184050 AT5G05860.1 36.500 200 112 4 3 202 260 444 5.42e-33 123
Msa1184050 AT1G05560.2 36.500 200 121 4 2 201 304 497 5.83e-33 124
Msa1184050 AT1G73880.1 38.384 198 105 4 6 201 280 462 8.79e-33 123
Msa1184050 AT5G17050.1 36.923 195 103 3 7 201 278 452 3.15e-32 121
Msa1184050 AT5G05890.1 36.893 206 115 5 3 208 265 455 3.31e-32 121
Msa1184050 AT3G46700.1 37.931 203 111 4 3 205 257 444 5.30e-32 120
Msa1184050 AT3G46660.1 36.735 196 109 4 3 198 268 448 5.87e-32 120
Msa1184050 AT1G51210.1 37.853 177 90 4 4 180 276 432 6.76e-32 120
Msa1184050 AT3G46690.1 37.186 199 110 4 3 201 262 445 9.44e-32 120
Msa1184050 AT4G15550.1 38.916 203 114 5 2 201 274 469 1.20e-31 120
Msa1184050 AT5G17030.1 35.468 203 111 3 6 208 276 458 7.57e-31 117
Msa1184050 AT5G59590.1 35.678 199 113 4 3 201 262 445 8.28e-31 117
Msa1184050 AT3G21560.1 33.659 205 121 4 2 205 282 472 1.21e-30 117
Msa1184050 AT1G30530.1 37.566 189 98 3 6 194 271 439 1.25e-30 117
Msa1184050 AT4G15480.1 34.146 205 125 2 2 205 283 478 1.25e-30 117
Msa1184050 AT3G46650.1 37.245 196 108 4 3 198 245 425 1.39e-30 116
Msa1184050 AT5G38040.1 35.176 199 113 4 3 201 263 445 1.48e-30 116
Msa1184050 AT1G22360.2 41.558 154 75 3 6 156 294 435 2.93e-30 116
Msa1184050 AT2G30140.1 34.928 209 111 4 3 207 266 453 4.35e-30 115
Msa1184050 AT2G30140.2 34.928 209 111 4 3 207 265 452 4.86e-30 115
Msa1184050 AT1G22370.1 40.206 194 98 6 2 194 118 294 8.46e-30 112
Msa1184050 AT5G05900.1 35.176 199 107 4 3 201 267 443 1.44e-29 114
Msa1184050 AT3G46670.1 36.735 196 109 4 3 198 261 441 1.71e-29 114
Msa1184050 AT3G46720.1 37.000 200 104 4 3 202 260 437 5.29e-29 112
Msa1184050 AT5G65550.1 36.196 163 90 2 7 169 278 426 6.61e-29 112
Msa1184050 AT1G22370.2 40.206 194 98 6 2 194 288 464 9.84e-29 112
Msa1184050 AT4G15490.1 35.122 205 118 4 2 205 276 466 1.03e-28 112
Msa1184050 AT5G38010.1 34.673 199 114 3 3 201 267 449 1.39e-28 111
Msa1184050 AT4G14090.1 34.375 192 106 6 7 194 269 444 1.44e-28 111
Msa1184050 AT3G02100.1 39.106 179 84 5 3 180 283 437 1.76e-28 111
Msa1184050 AT5G17040.2 35.204 196 107 3 6 201 158 333 2.50e-28 109
Msa1184050 AT1G06000.1 37.624 202 115 4 6 205 241 433 2.80e-28 110
Msa1184050 AT2G28080.1 37.500 184 101 6 2 185 284 453 3.39e-28 110
Msa1184050 AT5G17040.1 35.204 196 107 3 6 201 260 435 4.02e-28 110
Msa1184050 AT2G26480.1 33.166 199 119 3 3 201 257 441 9.96e-28 108
Msa1184050 AT5G49690.1 36.158 177 95 2 6 182 274 432 1.59e-27 108
Msa1184050 AT4G15500.1 32.683 205 123 4 2 205 272 462 3.45e-27 107
Msa1184050 AT5G54010.1 37.725 167 93 2 5 171 256 411 8.72e-27 106
Msa1184050 AT2G30150.1 34.314 204 107 5 3 201 251 432 1.15e-26 106
Msa1184050 AT5G53990.1 37.126 167 94 3 5 171 250 405 1.36e-26 105
Msa1184050 AT2G30150.2 34.314 204 107 5 3 201 267 448 1.78e-26 105
Msa1184050 AT3G29630.2 36.527 167 96 1 5 171 226 382 6.72e-26 103
Msa1184050 AT3G29630.1 36.527 167 96 1 5 171 252 408 8.34e-26 103
Msa1184050 AT2G22590.1 34.078 179 108 3 2 180 277 445 1.27e-25 103
Msa1184050 AT1G64910.1 34.483 174 97 4 7 178 252 410 2.75e-25 102
Msa1184050 AT4G27570.1 36.527 167 95 2 5 171 256 411 4.11e-25 102
Msa1184050 AT1G50580.1 31.707 205 127 3 5 207 251 444 6.47e-25 101
Msa1184050 AT3G22250.1 33.333 186 95 8 3 184 280 440 6.25e-24 98.6
Msa1184050 AT4G27560.1 34.132 167 99 2 5 171 256 411 1.52e-23 97.4
Msa1184050 AT2G22930.1 33.333 168 101 2 4 171 249 405 4.35e-23 96.3
Msa1184050 AT4G09500.1 33.333 168 99 3 5 171 225 380 1.07e-22 94.7
Msa1184050 AT4G09500.2 33.333 168 99 3 5 171 250 405 1.10e-22 95.1
Msa1184050 AT1G64920.1 33.523 176 98 5 7 176 252 414 7.58e-22 92.8
Msa1184050 AT4G01070.2 55.294 85 35 2 2 85 264 346 3.39e-21 90.1
Msa1184050 AT5G54060.1 34.392 189 110 4 7 194 276 451 1.88e-20 89.0
Msa1184050 AT5G37950.2 34.483 116 65 2 3 118 233 337 2.31e-15 73.9
Msa1184050 AT5G37950.1 34.483 116 65 2 3 118 239 343 2.76e-15 73.6

Find 42 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAAGAAACAGAGAAAA+TGG 0.199325 8_1:-19590808 Msa1184050:CDS
TCTGTTCTTTATGTATGTTT+TGG 0.258567 8_1:-19590997 Msa1184050:CDS
CAACTCAATGAGTTAGCATT+TGG 0.306842 8_1:-19590949 Msa1184050:CDS
GTATTTACCAAATGGTTTCT+TGG 0.330315 8_1:-19590827 Msa1184050:CDS
ACTTTGGAGAGTGTGGTTAA+TGG 0.345363 8_1:-19590697 Msa1184050:CDS
CTTGGTCATGGTTCAATTGG+TGG 0.364820 8_1:-19590748 Msa1184050:CDS
GCACCACAAGTTGAGATTCT+TGG 0.370993 8_1:-19590766 Msa1184050:CDS
TTTCTTTCCAAGAAACCATT+TGG 0.377931 8_1:+19590820 None:intergenic
CCACTTTCATCATCAACCTT+TGG 0.392355 8_1:+19590589 None:intergenic
AATCTTTGTTCTGCAAATAG+AGG 0.409100 8_1:+19590655 None:intergenic
ATTCTTGGTCATGGTTCAAT+TGG 0.416708 8_1:-19590751 Msa1184050:CDS
AATAGAGGCCATGCAATCAT+AGG 0.417514 8_1:+19590670 None:intergenic
GCAGAGTTAACAGCTTTACT+TGG 0.420196 8_1:+19590883 None:intergenic
CCGTTAGAGTATTTACCAAA+TGG 0.450358 8_1:-19590835 Msa1184050:CDS
CCAAAGGTTGATGATGAAAG+TGG 0.450373 8_1:-19590589 Msa1184050:CDS
ATGGATTGGTTGTTCCATCA+TGG 0.450594 8_1:-19590789 Msa1184050:CDS
TTGTGGTTGGGGTTCAACTT+TGG 0.450652 8_1:-19590713 Msa1184050:CDS
AAGAACAGAACTTGGTGGTT+GGG 0.475060 8_1:+19591011 None:intergenic
TGGATTGGTTGTTCCATCAT+GGG 0.505053 8_1:-19590788 Msa1184050:CDS
GGGTTCAACTTTGGAGAGTG+TGG 0.511321 8_1:-19590704 Msa1184050:CDS
CAAGTTGAGATTCTTGGTCA+TGG 0.513039 8_1:-19590760 Msa1184050:CDS
CATGGAAGGTGATGAAAGCT+TGG 0.514512 8_1:-19590524 Msa1184050:CDS
AAAGAACAGAACTTGGTGGT+TGG 0.518544 8_1:+19591010 None:intergenic
CATACATAAAGAACAGAACT+TGG 0.526486 8_1:+19591003 None:intergenic
TCAACTTGTGGTGCCCATGA+TGG 0.543506 8_1:+19590775 None:intergenic
CAAGTGAACACGGTTCATCT+AGG 0.546895 8_1:-19590453 Msa1184050:CDS
AAGAAACAGAGAAAATGGAT+TGG 0.554526 8_1:-19590803 Msa1184050:CDS
ATGGTGTTCCTATGATTGCA+TGG 0.560119 8_1:-19590678 Msa1184050:CDS
AAGTGGGATAGTGAAAAGAG+AGG 0.570992 8_1:-19590572 Msa1184050:CDS
GCATTTGGATTAGAATTGAG+TGG 0.582499 8_1:-19590934 Msa1184050:CDS
CCATTTGGTAAATACTCTAA+CGG 0.585513 8_1:+19590835 None:intergenic
AGAATCAAAGAATTGAGTGA+TGG 0.599141 8_1:-19590490 Msa1184050:CDS
ACATAAAGAACAGAACTTGG+TGG 0.614992 8_1:+19591006 None:intergenic
TGAACACGGTTCATCTAGGA+AGG 0.615852 8_1:-19590449 Msa1184050:CDS
CAAAGGTTGATGATGAAAGT+GGG 0.642278 8_1:-19590588 Msa1184050:CDS
CAAAGTGGCTGTGAGGCCAA+AGG 0.659851 8_1:-19590605 Msa1184050:CDS
TGACCAAGAATCTCAACTTG+TGG 0.660415 8_1:+19590763 None:intergenic
TAAATGTGTGAAGAGAATCA+TGG 0.671345 8_1:-19590542 Msa1184050:CDS
ATTGACAGATGTGCTCAAAG+TGG 0.698009 8_1:-19590620 Msa1184050:CDS
TGTGTGAAGAGAATCATGGA+AGG 0.726167 8_1:-19590538 Msa1184050:CDS
ATGTGCTCAAAGTGGCTGTG+AGG 0.734532 8_1:-19590612 Msa1184050:CDS
GCTGTTGCAACAAGTGAACA+CGG 0.748601 8_1:-19590463 Msa1184050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTGTTCTTTATGTATGTTT+TGG - chr8_1:19590429-19590448 Msa1184050:CDS 25.0%
!! CTGTTCTTTATGTATGTTTT+GGG - chr8_1:19590430-19590449 Msa1184050:CDS 25.0%
CATACATAAAGAACAGAACT+TGG + chr8_1:19590426-19590445 None:intergenic 30.0%
!!! GTTAACTCTGCTTATTTTGT+TGG - chr8_1:19590555-19590574 Msa1184050:CDS 30.0%
CCATTTGGTAAATACTCTAA+CGG + chr8_1:19590594-19590613 None:intergenic 30.0%
GTATTTACCAAATGGTTTCT+TGG - chr8_1:19590599-19590618 Msa1184050:CDS 30.0%
TTTCTTTCCAAGAAACCATT+TGG + chr8_1:19590609-19590628 None:intergenic 30.0%
TTGGAAAGAAACAGAGAAAA+TGG - chr8_1:19590618-19590637 Msa1184050:CDS 30.0%
AAGAAACAGAGAAAATGGAT+TGG - chr8_1:19590623-19590642 Msa1184050:CDS 30.0%
!!! TTTTTTGAGTCATTGTGGTT+GGG - chr8_1:19590701-19590720 Msa1184050:CDS 30.0%
AATCTTTGTTCTGCAAATAG+AGG + chr8_1:19590774-19590793 None:intergenic 30.0%
TAAATGTGTGAAGAGAATCA+TGG - chr8_1:19590884-19590903 Msa1184050:CDS 30.0%
AGAATCAAAGAATTGAGTGA+TGG - chr8_1:19590936-19590955 Msa1184050:CDS 30.0%
ACATAAAGAACAGAACTTGG+TGG + chr8_1:19590423-19590442 None:intergenic 35.0%
!!! CTTTATGTATGTTTTGGGAG+TGG - chr8_1:19590435-19590454 Msa1184050:CDS 35.0%
CAACTCAATGAGTTAGCATT+TGG - chr8_1:19590477-19590496 Msa1184050:CDS 35.0%
! GCATTTGGATTAGAATTGAG+TGG - chr8_1:19590492-19590511 Msa1184050:CDS 35.0%
TGAGTGGTAAAAAGTTCTTG+TGG - chr8_1:19590508-19590527 Msa1184050:CDS 35.0%
GAGTGGTAAAAAGTTCTTGT+GGG - chr8_1:19590509-19590528 Msa1184050:CDS 35.0%
! CCGTTAGAGTATTTACCAAA+TGG - chr8_1:19590591-19590610 Msa1184050:CDS 35.0%
ATTCTTGGTCATGGTTCAAT+TGG - chr8_1:19590675-19590694 Msa1184050:CDS 35.0%
!!! GTTTTTTGAGTCATTGTGGT+TGG - chr8_1:19590700-19590719 Msa1184050:CDS 35.0%
!!! TTTTTGAGTCATTGTGGTTG+GGG - chr8_1:19590702-19590721 Msa1184050:CDS 35.0%
!! CAAAGGTTGATGATGAAAGT+GGG - chr8_1:19590838-19590857 Msa1184050:CDS 35.0%
! AAGAACAGAACTTGGTGGTT+GGG + chr8_1:19590418-19590437 None:intergenic 40.0%
! AAAGAACAGAACTTGGTGGT+TGG + chr8_1:19590419-19590438 None:intergenic 40.0%
!!! TATGTATGTTTTGGGAGTGG+TGG - chr8_1:19590438-19590457 Msa1184050:CDS 40.0%
GCAGAGTTAACAGCTTTACT+TGG + chr8_1:19590546-19590565 None:intergenic 40.0%
!! ATGGATTGGTTGTTCCATCA+TGG - chr8_1:19590637-19590656 Msa1184050:CDS 40.0%
!! TGGATTGGTTGTTCCATCAT+GGG - chr8_1:19590638-19590657 Msa1184050:CDS 40.0%
TGACCAAGAATCTCAACTTG+TGG + chr8_1:19590666-19590685 None:intergenic 40.0%
! CAAGTTGAGATTCTTGGTCA+TGG - chr8_1:19590666-19590685 Msa1184050:CDS 40.0%
!!! GGTGGTTTTTTGAGTCATTG+TGG - chr8_1:19590696-19590715 Msa1184050:CDS 40.0%
! ACTTTGGAGAGTGTGGTTAA+TGG - chr8_1:19590729-19590748 Msa1184050:CDS 40.0%
ATGGTGTTCCTATGATTGCA+TGG - chr8_1:19590748-19590767 Msa1184050:CDS 40.0%
AATAGAGGCCATGCAATCAT+AGG + chr8_1:19590759-19590778 None:intergenic 40.0%
ATTGACAGATGTGCTCAAAG+TGG - chr8_1:19590806-19590825 Msa1184050:CDS 40.0%
CCACTTTCATCATCAACCTT+TGG + chr8_1:19590840-19590859 None:intergenic 40.0%
!! CCAAAGGTTGATGATGAAAG+TGG - chr8_1:19590837-19590856 Msa1184050:CDS 40.0%
AAGTGGGATAGTGAAAAGAG+AGG - chr8_1:19590854-19590873 Msa1184050:CDS 40.0%
TGTGTGAAGAGAATCATGGA+AGG - chr8_1:19590888-19590907 Msa1184050:CDS 40.0%
! GCACCACAAGTTGAGATTCT+TGG - chr8_1:19590660-19590679 Msa1184050:CDS 45.0%
CTTGGTCATGGTTCAATTGG+TGG - chr8_1:19590678-19590697 Msa1184050:CDS 45.0%
TTGTGGTTGGGGTTCAACTT+TGG - chr8_1:19590713-19590732 Msa1184050:CDS 45.0%
CATGGAAGGTGATGAAAGCT+TGG - chr8_1:19590902-19590921 Msa1184050:CDS 45.0%
GCTGTTGCAACAAGTGAACA+CGG - chr8_1:19590963-19590982 Msa1184050:CDS 45.0%
CAAGTGAACACGGTTCATCT+AGG - chr8_1:19590973-19590992 Msa1184050:CDS 45.0%
TGAACACGGTTCATCTAGGA+AGG - chr8_1:19590977-19590996 Msa1184050:CDS 45.0%
TCAACTTGTGGTGCCCATGA+TGG + chr8_1:19590654-19590673 None:intergenic 50.0%
! GGGTTCAACTTTGGAGAGTG+TGG - chr8_1:19590722-19590741 Msa1184050:CDS 50.0%
ATGTGCTCAAAGTGGCTGTG+AGG - chr8_1:19590814-19590833 Msa1184050:CDS 50.0%
CAAAGTGGCTGTGAGGCCAA+AGG - chr8_1:19590821-19590840 Msa1184050:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 19590411 19591037 19590411 ID=Msa1184050;Name=Msa1184050
chr8_1 mRNA 19590411 19591037 19590411 ID=Msa1184050-mRNA-1;Parent=Msa1184050;Name=Msa1184050-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|208
chr8_1 exon 19590411 19591037 19590411 ID=Msa1184050-mRNA-1:exon:7617;Parent=Msa1184050-mRNA-1
chr8_1 CDS 19590411 19591037 19590411 ID=Msa1184050-mRNA-1:cds;Parent=Msa1184050-mRNA-1
Gene Sequence

>Msa1184050

ATGTCCCAACCACCAAGTTCTGTTCTTTATGTATGTTTTGGGAGTGGTGGAACAGTTTCTCATGAACAACTCAATGAGTTAGCATTTGGATTAGAATTGAGTGGTAAAAAGTTCTTGTGGGTTGTGAGAGTTCCAAGTAAAGCTGTTAACTCTGCTTATTTTGTTGGAGCAAAAGATGATCCGTTAGAGTATTTACCAAATGGTTTCTTGGAAAGAAACAGAGAAAATGGATTGGTTGTTCCATCATGGGCACCACAAGTTGAGATTCTTGGTCATGGTTCAATTGGTGGTTTTTTGAGTCATTGTGGTTGGGGTTCAACTTTGGAGAGTGTGGTTAATGGTGTTCCTATGATTGCATGGCCTCTATTTGCAGAACAAAGATTGAATGCTAGATTATTGACAGATGTGCTCAAAGTGGCTGTGAGGCCAAAGGTTGATGATGAAAGTGGGATAGTGAAAAGAGAGGAAGTTGCTAAATGTGTGAAGAGAATCATGGAAGGTGATGAAAGCTTGGAGATACAAAAGAGAATCAAAGAATTGAGTGATGGTGCTGCTGTTGCAACAAGTGAACACGGTTCATCTAGGAAGGCACTCTCTTCTTTAGCATTGAAATTACATAACTTTTGA

Protein sequence

>Msa1184050

MSQPPSSVLYVCFGSGGTVSHEQLNELAFGLELSGKKFLWVVRVPSKAVNSAYFVGAKDDPLEYLPNGFLERNRENGLVVPSWAPQVEILGHGSIGGFLSHCGWGSTLESVVNGVPMIAWPLFAEQRLNARLLTDVLKVAVRPKVDDESGIVKREEVAKCVKRIMEGDESLEIQKRIKELSDGAAVATSEHGSSRKALSSLALKLHNF*