AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540070 MtrunA17_Chr4g0012061 98.656 521 7 0 9 529 193 713 0.0 1057
Msa0540070 MtrunA17_Chr7g0230671 85.988 521 73 0 9 529 181 701 0.0 900
Msa0540070 MtrunA17_Chr6g0465161 40.919 457 243 6 9 454 170 610 4.03e-116 359
Msa0540070 MtrunA17_Chr1g0148121 40.513 390 228 2 9 397 172 558 1.97e-106 332
Msa0540070 MtrunA17_Chr1g0169361 43.127 371 202 5 9 376 225 589 1.42e-104 331
Msa0540070 MtrunA17_Chr3g0136721 35.510 490 269 7 2 457 169 645 1.03e-101 321
Msa0540070 MtrunA17_Chr1g0199921 35.523 411 239 9 1 394 232 633 4.30e-71 243
Msa0540070 MtrunA17_Chr3g0129101 32.152 395 228 8 9 371 245 631 1.46e-56 201
Msa0540070 MtrunA17_Chr8g0382921 30.886 395 233 8 9 371 236 622 8.45e-55 196
Msa0540070 MtrunA17_Chr3g0120791 32.754 345 219 5 9 346 242 580 3.52e-54 194
Msa0540070 MtrunA17_Chr5g0433911 34.978 223 126 6 20 230 110 325 5.75e-30 123
Msa0540070 MtrunA17_Chr4g0057941 27.327 333 216 10 23 339 122 444 5.16e-27 114
Msa0540070 MtrunA17_Chr5g0428451 23.876 356 238 5 9 334 166 518 9.92e-26 110
Msa0540070 MtrunA17_Chr1g0147481 29.845 258 153 6 9 248 165 412 1.98e-25 111
Msa0540070 MtrunA17_Chr3g0113361 27.778 234 149 5 8 224 128 358 1.31e-21 98.2
Msa0540070 MtrunA17_Chr1g0193751 29.167 264 155 8 10 259 270 515 2.82e-18 88.2
Msa0540070 MtrunA17_Chr8g0360981 24.855 346 222 6 21 336 260 597 1.35e-17 86.3
Msa0540070 MtrunA17_Chr4g0048521 22.741 343 227 8 21 334 271 604 8.72e-13 70.9
Msa0540070 MtrunA17_Chr2g0281061 25.098 255 158 6 21 250 268 514 2.13e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540070 AT1G79600.1 82.150 521 93 0 9 529 188 708 0.0 884
Msa0540070 AT1G71810.1 43.091 427 225 3 9 426 161 578 1.07e-119 368
Msa0540070 AT4G31390.3 41.538 390 224 2 9 397 9 395 2.51e-109 334
Msa0540070 AT4G31390.1 41.538 390 224 2 9 397 208 594 1.82e-107 336
Msa0540070 AT3G24190.1 44.205 371 198 6 9 376 233 597 3.06e-106 336
Msa0540070 AT5G24970.1 37.991 458 234 7 9 421 175 627 8.33e-101 320
Msa0540070 AT5G24970.3 37.991 458 234 7 9 421 178 630 9.23e-101 320
Msa0540070 AT5G24970.2 37.991 458 234 7 9 421 217 669 3.68e-100 319
Msa0540070 AT4G31390.2 40.000 390 205 3 9 397 208 569 2.21e-98 311
Msa0540070 AT2G39190.2 33.333 450 242 12 9 411 240 678 3.10e-66 229
Msa0540070 AT3G07700.1 33.038 339 224 3 9 346 231 567 4.85e-55 197
Msa0540070 AT3G07700.2 33.038 339 224 3 9 346 231 567 4.85e-55 197
Msa0540070 AT3G07700.4 33.038 339 224 3 9 346 231 567 4.85e-55 197
Msa0540070 AT5G64940.1 31.738 397 229 8 9 371 260 648 2.55e-53 193
Msa0540070 AT5G64940.2 31.738 397 229 8 9 371 260 648 2.55e-53 193
Msa0540070 AT3G07700.3 31.436 369 219 5 9 346 231 596 1.81e-52 190
Msa0540070 AT4G24810.4 28.185 259 167 5 9 252 62 316 6.32e-30 120
Msa0540070 AT4G24810.6 24.462 372 232 8 9 347 62 417 1.34e-29 121
Msa0540070 AT4G24810.1 24.462 372 232 8 9 347 62 417 1.34e-29 121
Msa0540070 AT4G24810.5 29.707 239 149 5 9 232 62 296 1.86e-29 118
Msa0540070 AT1G65950.2 32.843 204 130 3 21 220 151 351 2.89e-29 120
Msa0540070 AT4G24810.2 24.462 372 232 8 9 347 105 460 2.91e-29 121
Msa0540070 AT1G65950.1 32.843 204 130 3 21 220 151 351 8.67e-29 120
Msa0540070 AT5G05200.1 24.860 358 232 5 9 334 167 519 1.50e-28 119
Msa0540070 AT4G24810.3 24.274 379 231 9 9 347 62 424 1.16e-27 115
Msa0540070 AT5G50330.1 29.008 262 167 7 9 255 105 362 1.67e-26 113
Msa0540070 AT5G24810.1 31.276 243 139 7 9 233 139 371 4.92e-24 107
Msa0540070 AT2G40090.1 29.389 262 161 8 8 250 130 386 4.19e-23 103
Msa0540070 AT5G24810.2 30.453 243 141 7 9 233 170 402 6.00e-22 100
Msa0540070 AT5G50330.2 26.718 262 157 8 9 255 105 346 2.14e-20 94.4
Msa0540070 AT4G01660.1 27.376 263 165 8 10 261 268 515 2.46e-16 82.4
Msa0540070 AT2G39190.1 40.164 122 69 3 9 129 240 358 1.77e-15 78.6
Msa0540070 AT1G61640.1 22.989 348 219 9 21 334 263 595 1.90e-15 79.7
Msa0540070 AT1G61640.3 25.769 260 152 7 21 250 263 511 3.98e-15 78.6
Msa0540070 AT1G11390.1 23.478 345 221 9 21 334 266 598 1.57e-14 77.0

Find 136 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTCAAGGATCATTT+TGG 0.173798 4_1:-21613968 Msa0540070:three_prime_UTR
TTGTATCAATATCCATTTAA+TGG 0.197786 4_1:-21616452 Msa0540070:intron
GAAGCGAGATTTGCAATAAT+TGG 0.217043 4_1:-21616665 Msa0540070:CDS
TCTAGTTATTATAATTATAA+TGG 0.221260 4_1:+21613498 None:intergenic
TGCAGCAAGCACCTTAAAAT+TGG 0.225494 4_1:+21616059 None:intergenic
CAACTTGCATTTGGCCATTT+GGG 0.234966 4_1:-21613430 Msa0540070:three_prime_UTR
TAGTTTATACTTGAAATTCT+AGG 0.242093 4_1:-21614200 Msa0540070:three_prime_UTR
TCAACTTGCATTTGGCCATT+TGG 0.247259 4_1:-21613431 Msa0540070:three_prime_UTR
TTCTACCTCATTAGAGGTTT+AGG 0.250334 4_1:-21617735 Msa0540070:CDS
GAATGCATTGAGAGGGAATT+AGG 0.251683 4_1:-21617912 Msa0540070:CDS
ATAAGAATTTGCTTAATTTA+CGG 0.262626 4_1:+21613338 None:intergenic
ATTGCAAATCTCGCTTCTTC+TGG 0.262758 4_1:+21616671 None:intergenic
CAAAAGTAATTCAAACTTCT+AGG 0.280790 4_1:+21614319 None:intergenic
TCTACCTCATTAGAGGTTTA+GGG 0.280854 4_1:-21617734 Msa0540070:CDS
CATACTATGCGTTGATATTA+AGG 0.284829 4_1:-21616122 Msa0540070:CDS
TTAATTGACAAAATAGAGTT+TGG 0.287906 4_1:+21613372 None:intergenic
ATGCTCTTGATTTCTTATCT+AGG 0.293725 4_1:-21616589 Msa0540070:CDS
AACATTATCTCACCATTAAA+TGG 0.304241 4_1:+21616440 None:intergenic
CGCTTTCTTATGCAATTACT+TGG 0.319801 4_1:-21614415 Msa0540070:CDS
TCCTCATCCTGGTAATCTTT+TGG 0.321004 4_1:-21616747 Msa0540070:CDS
CAACCTGAGGCCCGTAAACT+TGG 0.330945 4_1:-21614478 Msa0540070:CDS
ATTAAGGTCTCTCACTGTTC+TGG 0.337948 4_1:-21616106 Msa0540070:CDS
TTGGACTTCTACCTCATTAG+AGG 0.338286 4_1:-21617741 Msa0540070:CDS
GCTTGAAAACCTTCTAGTTC+AGG 0.339166 4_1:-21615651 Msa0540070:CDS
CCGATAGCTGCTGCTAGTTT+AGG 0.342246 4_1:-21617849 Msa0540070:CDS
TTTCGAAGTGCAGGAACAAT+TGG 0.368170 4_1:+21616551 None:intergenic
GTCCCTCTGTAGGTATTTGT+AGG 0.371833 4_1:+21614008 None:intergenic
GCATCTCTTAGATATGGATT+TGG 0.372745 4_1:+21616000 None:intergenic
TTGAGGAACCTTGTCTTCAA+TGG 0.379397 4_1:-21615455 Msa0540070:CDS
GATACATTCCTTCAATTTCA+AGG 0.380243 4_1:-21613918 Msa0540070:three_prime_UTR
AACAGAAACATGTGTATGTA+AGG 0.384929 4_1:+21613571 None:intergenic
ATCAGAGCATCTCTTAGATA+TGG 0.388348 4_1:+21615994 None:intergenic
GAGATCAAGTGATTAGGATA+TGG 0.389231 4_1:-21615373 Msa0540070:CDS
CATTCAAAGGCGTCCTCGTC+AGG 0.401484 4_1:+21617930 None:intergenic
TGCTCTTGATTTCTTATCTA+GGG 0.422756 4_1:-21616588 Msa0540070:CDS
AGCTGCTGCTAGTTTAGGTC+AGG 0.429613 4_1:-21617844 Msa0540070:CDS
TCAGTTTCTGACATCATAAG+TGG 0.430403 4_1:+21615419 None:intergenic
AAGACAATTGTGGACGGTCT+CGG 0.434815 4_1:-21616482 Msa0540070:CDS
AAATTAGTCCTTGAAATTGA+AGG 0.439860 4_1:+21613910 None:intergenic
CTTGAAAACCTTCTAGTTCA+GGG 0.442279 4_1:-21615650 Msa0540070:CDS
AGGAACATACCGGTATGTTT+CGG 0.445651 4_1:+21615484 None:intergenic
TACCTTCAGGACAGGTTGTA+AGG 0.451984 4_1:+21615595 None:intergenic
AGTTTATACTTGAAATTCTA+GGG 0.453581 4_1:-21614199 Msa0540070:three_prime_UTR
TTATAATAACTAGAATTAGA+AGG 0.456160 4_1:-21613489 Msa0540070:three_prime_UTR
GAGGCAAGGGCTTAACGTCT+TGG 0.458687 4_1:-21616837 Msa0540070:CDS
TGCAATGTATCAATAACAAT+TGG 0.458874 4_1:-21613609 Msa0540070:three_prime_UTR
AACCTGAGGCCCGTAAACTT+GGG 0.465701 4_1:-21614477 Msa0540070:CDS
TCCCTCTGTAGGTATTTGTA+GGG 0.469966 4_1:+21614009 None:intergenic
GCGGTCAAGGTCCAACGCCC+TGG 0.472478 4_1:-21617783 Msa0540070:CDS
GGACTAAAATGTCATTAAGT+TGG 0.474383 4_1:+21614030 None:intergenic
AGCTCAGAGATCAAGTGATT+AGG 0.475418 4_1:-21615379 Msa0540070:CDS
TATTGATAATGTGGAGGACT+AGG 0.480624 4_1:+21614167 None:intergenic
GCAGCAAGCACCTTAAAATT+GGG 0.485400 4_1:+21616060 None:intergenic
TATCATCACAATAAGCATCA+TGG 0.487303 4_1:-21613640 Msa0540070:three_prime_UTR
CCTATAGCTTCTTCAATGCC+AGG 0.489261 4_1:+21617765 None:intergenic
GAAATGCTTATAAGCCCAAA+TGG 0.491073 4_1:+21613416 None:intergenic
TCAAGAGCTTAATTATGTGC+AGG 0.492075 4_1:-21617634 Msa0540070:intron
ATCAATCCAGTCCCTCGTAT+TGG 0.493816 4_1:+21613938 None:intergenic
TTATTATGGACAGAGAAGAT+AGG 0.494124 4_1:-21613806 Msa0540070:intron
GGGCAAAGTTGTTGCGGTCA+AGG 0.500027 4_1:-21617796 Msa0540070:CDS
TTCCTCAGAACTTCACCATC+AGG 0.502663 4_1:+21615563 None:intergenic
AAAGCTCGGTTGAAGCGGTC+GGG 0.505739 4_1:-21617816 Msa0540070:CDS
CCTGGCATTGAAGAAGCTAT+AGG 0.507063 4_1:-21617765 Msa0540070:CDS
CGAAGGTACTAACGATCGAT+TGG 0.507393 4_1:-21616898 Msa0540070:CDS
CTTCTTCAATGCCAGGGCGT+TGG 0.511436 4_1:+21617772 None:intergenic
AATATCAACGCATAGTATGC+TGG 0.512574 4_1:+21616126 None:intergenic
CTAACGATCGATTGGGTCGA+AGG 0.517986 4_1:-21616890 Msa0540070:CDS
TAGGTCAGGTTTATAAAGCT+CGG 0.519929 4_1:-21617830 Msa0540070:CDS
CTCAGACAACTGCTCGAGTA+CGG 0.524488 4_1:-21616785 Msa0540070:CDS
ATTAGAAGGAGAAAATATGC+AGG 0.524950 4_1:-21613475 Msa0540070:three_prime_UTR
TAAAGCTCGGTTGAAGCGGT+CGG 0.526705 4_1:-21617817 Msa0540070:CDS
TAGAGATTTCTCTGCTAAAG+AGG 0.529315 4_1:-21615618 Msa0540070:CDS
CAGGACTCAACAATACCTTC+AGG 0.537914 4_1:+21615582 None:intergenic
TGTGTCACAGCAAAGGCTAA+AGG 0.539286 4_1:-21614365 Msa0540070:three_prime_UTR
TTCCATGCAGATCCTCATCC+TGG 0.539915 4_1:-21616758 Msa0540070:CDS
CTAGCAGCAGCTATCGGCGA+TGG 0.540209 4_1:+21617855 None:intergenic
CGCCTTTGAATGCATTGAGA+GGG 0.540213 4_1:-21617919 Msa0540070:CDS
GCACAATTTCCGAAACATAC+CGG 0.540600 4_1:-21615493 Msa0540070:CDS
CCTAAACTAGCAGCAGCTAT+CGG 0.540644 4_1:+21617849 None:intergenic
TTTATAAAGCTCGGTTGAAG+CGG 0.541624 4_1:-21617821 Msa0540070:CDS
CATTGAAGAAGCTATAGGAT+TGG 0.543334 4_1:-21617760 Msa0540070:CDS
GGCCTTACAACCTGTCCTGA+AGG 0.543439 4_1:-21615597 Msa0540070:CDS
GAGCCATAGCTTCGTAGTCT+CGG 0.545454 4_1:+21616621 None:intergenic
AATCAAATTTGTCCCTCTGT+AGG 0.547234 4_1:+21613998 None:intergenic
ACCTGAGGCCCGTAAACTTG+GGG 0.549273 4_1:-21614476 Msa0540070:CDS
GTTTCTAATAAATAAATATG+TGG 0.549328 4_1:-21617712 Msa0540070:CDS
CTCAACAATACCTTCAGGAC+AGG 0.549422 4_1:+21615587 None:intergenic
ATCATCACAATAAGCATCAT+GGG 0.551232 4_1:-21613639 Msa0540070:three_prime_UTR
TTGCATTGCCATTGAAGACA+AGG 0.554912 4_1:+21615447 None:intergenic
ATTATAATGGAAACAAAAGA+AGG 0.555061 4_1:+21613511 None:intergenic
AGGTCTCTCACTGTTCTGGA+AGG 0.557957 4_1:-21616102 Msa0540070:CDS
GCCAAAAGATTACCAGGATG+AGG 0.558707 4_1:+21616746 None:intergenic
GAAGGTACTAACGATCGATT+GGG 0.560592 4_1:-21616897 Msa0540070:CDS
TTCCCTCTCAATGCATTCAA+AGG 0.562534 4_1:+21617917 None:intergenic
TTCGAATATTGATAATGTGG+AGG 0.566160 4_1:+21614161 None:intergenic
ATATCACCAATACGAGGGAC+TGG 0.569433 4_1:-21613944 Msa0540070:three_prime_UTR
CAAGAAGCAATTGAGAGGCA+AGG 0.576159 4_1:-21616851 Msa0540070:CDS
TAACCGAGACTACGAAGCTA+TGG 0.578460 4_1:-21616624 Msa0540070:CDS
AAGAAGCAATTGAGAGGCAA+GGG 0.580778 4_1:-21616850 Msa0540070:CDS
TTGAAACTAAATGAATAATG+TGG 0.582812 4_1:+21614070 None:intergenic
GCGTCCTCGTCAGGAAATGT+TGG 0.582997 4_1:+21617939 None:intergenic
GAAACCCTAAACCTCTAATG+AGG 0.585397 4_1:+21617730 None:intergenic
AGGAGAAAATATGCAGGTGG+TGG 0.586058 4_1:-21613469 Msa0540070:three_prime_UTR
GGTGTTGCCAAAAGATTACC+AGG 0.588144 4_1:+21616740 None:intergenic
GCTTAACTTCAAGACAATTG+TGG 0.598522 4_1:-21616492 Msa0540070:CDS
ACGCCTTTGAATGCATTGAG+AGG 0.599528 4_1:-21617920 Msa0540070:CDS
ACAGAAACATGTGTATGTAA+GGG 0.601716 4_1:+21613572 None:intergenic
TTATGATGTCAGAAACTGAA+AGG 0.603481 4_1:-21615415 Msa0540070:CDS
CTATAGCTTCTTCAATGCCA+GGG 0.605574 4_1:+21617766 None:intergenic
CCTGAGGCCCGTAAACTTGG+GGG 0.608957 4_1:-21614475 Msa0540070:CDS
CATAGATTGTGTCACAGCAA+AGG 0.609015 4_1:-21614372 Msa0540070:exon
TGCAGGAGGGACAAAATGCA+AGG 0.613387 4_1:-21616991 Msa0540070:intron
TATCGGCGATGGAGATATTG+TGG 0.615296 4_1:+21617866 None:intergenic
AAGGTATTGTTGAGTCCTGA+TGG 0.620888 4_1:-21615578 Msa0540070:CDS
TGATAACAGATTCAGACAGA+GGG 0.621562 4_1:+21614100 None:intergenic
TGTCTTCAATGGCAATGCAA+AGG 0.625326 4_1:-21615444 Msa0540070:CDS
AGTATCGGTAGCAAAAGAGA+TGG 0.625690 4_1:+21615320 None:intergenic
TTGAAAACCTTCTAGTTCAG+GGG 0.625717 4_1:-21615649 Msa0540070:CDS
AACTTCAAGACAATTGTGGA+CGG 0.627853 4_1:-21616488 Msa0540070:CDS
TACCAGGATGAGGATCTGCA+TGG 0.634417 4_1:+21616756 None:intergenic
TCCCTACAAATACCTACAGA+GGG 0.641295 4_1:-21614010 Msa0540070:three_prime_UTR
ATGATCAAGAAGCAATTGAG+AGG 0.643370 4_1:-21616856 Msa0540070:CDS
TTTGCCAACATTTCCTGACG+AGG 0.644621 4_1:-21617943 Msa0540070:CDS
TTGATAACAGATTCAGACAG+AGG 0.647311 4_1:+21614099 None:intergenic
CTGAGGCCCGTAAACTTGGG+GGG 0.652407 4_1:-21614474 Msa0540070:CDS
GTCCCTACAAATACCTACAG+AGG 0.654631 4_1:-21614011 Msa0540070:three_prime_UTR
TTGGGACTATACAAGTGCGA+AGG 0.655685 4_1:-21616915 Msa0540070:CDS
TTGGAATATCACCAATACGA+GGG 0.660471 4_1:-21613949 Msa0540070:three_prime_UTR
AGAAGGAGAAAATATGCAGG+TGG 0.669617 4_1:-21613472 Msa0540070:three_prime_UTR
TCATTAAGTTGGTAATATCG+AGG 0.670997 4_1:+21614041 None:intergenic
GTCCTGATGGTGAAGTTCTG+AGG 0.671724 4_1:-21615565 Msa0540070:CDS
TATCGTCGTCATTATTGATG+CGG 0.674861 4_1:-21613663 Msa0540070:three_prime_UTR
GCGGTCGGGCAAAGTTGTTG+CGG 0.688582 4_1:-21617802 Msa0540070:CDS
ACAGGTGCTTCAGCAACCTG+AGG 0.706045 4_1:-21614491 Msa0540070:intron
GTCTTGGATCTAGTAAACAG+CGG 0.723373 4_1:-21616821 Msa0540070:CDS
TTTGGAATATCACCAATACG+AGG 0.727351 4_1:-21613950 Msa0540070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATTAGATTTTTCTTT+TGG - chr4_1:21614518-21614537 Msa0540070:intron 10.0%
!!! TTATATTAGATTTTTCTTTT+GGG - chr4_1:21614519-21614538 Msa0540070:intron 10.0%
!!! TGAAATATATTTTTTTTGAA+TGG - chr4_1:21616990-21617009 Msa0540070:intron 10.0%
!!! TTGTATTTTAATTTTTGTTT+TGG - chr4_1:21617837-21617856 Msa0540070:CDS 10.0%
!! TCTAGTTATTATAATTATAA+TGG + chr4_1:21618065-21618084 None:intergenic 10.0%
!! GTTTCTAATAAATAAATATG+TGG - chr4_1:21613848-21613867 Msa0540070:three_prime_UTR 15.0%
!!! TATATTAGATTTTTCTTTTG+GGG - chr4_1:21614520-21614539 Msa0540070:intron 15.0%
!! TTTAAAAATGACAAATAAGT+AGG + chr4_1:21615734-21615753 None:intergenic 15.0%
!!! GTTAATAAATTGCAATATTT+TGG + chr4_1:21616530-21616549 None:intergenic 15.0%
!!! ATTAAAATTTTGCAATTTCA+AGG - chr4_1:21617582-21617601 Msa0540070:intron 15.0%
!! TTATAATAACTAGAATTAGA+AGG - chr4_1:21618071-21618090 Msa0540070:intron 15.0%
!!! ATAAGAATTTGCTTAATTTA+CGG + chr4_1:21618225-21618244 None:intergenic 15.0%
!! GATGAAAACAAACATAATAA+AGG + chr4_1:21613493-21613512 None:intergenic 20.0%
!! TCATTATCAAATACAGATTT+CGG + chr4_1:21613971-21613990 None:intergenic 20.0%
!! AATACTGATCACTATTTATA+GGG - chr4_1:21614019-21614038 Msa0540070:three_prime_UTR 20.0%
!!! GTTTTATTCATTAACATACA+AGG + chr4_1:21614485-21614504 None:intergenic 20.0%
!! TTGTATCAATATCCATTTAA+TGG - chr4_1:21615108-21615127 Msa0540070:intron 20.0%
!!! AAACAATGATGGATTTAAAA+AGG + chr4_1:21615637-21615656 None:intergenic 20.0%
!! TACAAAAACAACAGATAAAA+TGG + chr4_1:21615698-21615717 None:intergenic 20.0%
!!! CTATTTGTTAAGGATATTAT+AGG - chr4_1:21615771-21615790 Msa0540070:intron 20.0%
!!! CCTTTTTATTTGTTGTTTTA+AGG + chr4_1:21615826-21615845 None:intergenic 20.0%
!! CCTTAAAACAACAAATAAAA+AGG - chr4_1:21615823-21615842 Msa0540070:intron 20.0%
!! AAACAACAAATAAAAAGGAA+TGG - chr4_1:21615828-21615847 Msa0540070:intron 20.0%
!!! ACTCAAATTATTTTACATGT+TGG - chr4_1:21616396-21616415 Msa0540070:intron 20.0%
!! ATAAACATAAACAGTAACTT+TGG - chr4_1:21616432-21616451 Msa0540070:intron 20.0%
!! TAAACATAAACAGTAACTTT+GGG - chr4_1:21616433-21616452 Msa0540070:intron 20.0%
!!! AATAAATTGCAATATTTTGG+TGG + chr4_1:21616527-21616546 None:intergenic 20.0%
!!! TTTAGAACATATAGTTGAAT+TGG - chr4_1:21616939-21616958 Msa0540070:CDS 20.0%
!! TAGTTTATACTTGAAATTCT+AGG - chr4_1:21617360-21617379 Msa0540070:intron 20.0%
!! AGTTTATACTTGAAATTCTA+GGG - chr4_1:21617361-21617380 Msa0540070:intron 20.0%
!!! ATTTTCGAATATTGATAATG+TGG + chr4_1:21617405-21617424 None:intergenic 20.0%
!! TTGAAACTAAATGAATAATG+TGG + chr4_1:21617493-21617512 None:intergenic 20.0%
!!! ATCAGATATTTACAGTTTTT+TGG + chr4_1:21617878-21617897 None:intergenic 20.0%
!!! ATTATAATGGAAACAAAAGA+AGG + chr4_1:21618052-21618071 None:intergenic 20.0%
!! TTAATTGACAAAATAGAGTT+TGG + chr4_1:21618191-21618210 None:intergenic 20.0%
! CACAGAGTAATTTAAAAACA+TGG - chr4_1:21613424-21613443 Msa0540070:three_prime_UTR 25.0%
! ATCAGTGACAAAAATTTCAA+TGG + chr4_1:21613536-21613555 None:intergenic 25.0%
! TGATAGTAGTTTGATACAAA+AGG - chr4_1:21613993-21614012 Msa0540070:three_prime_UTR 25.0%
! CAATACTGATCACTATTTAT+AGG - chr4_1:21614018-21614037 Msa0540070:three_prime_UTR 25.0%
! AGACTCAATCCTTAATAAAT+AGG - chr4_1:21614048-21614067 Msa0540070:three_prime_UTR 25.0%
! GACTCAATCCTTAATAAATA+GGG - chr4_1:21614049-21614068 Msa0540070:three_prime_UTR 25.0%
! TAAGATTGAAAACTGATCTT+AGG - chr4_1:21614138-21614157 Msa0540070:three_prime_UTR 25.0%
! GATATTATGCTAGAATATCT+TGG + chr4_1:21614171-21614190 None:intergenic 25.0%
! AAATACACTCATTATATGCT+TGG + chr4_1:21614421-21614440 None:intergenic 25.0%
!!! GATTGAATGTTAATTTTGAC+AGG - chr4_1:21614542-21614561 Msa0540070:intron 25.0%
!!! AAACTTGCTTTTCTTGATTT+CGG - chr4_1:21614850-21614869 Msa0540070:intron 25.0%
! AACATTATCTCACCATTAAA+TGG + chr4_1:21615123-21615142 None:intergenic 25.0%
! CTCTAATACAGAAAGAAAAT+TGG + chr4_1:21615171-21615190 None:intergenic 25.0%
! AGTTAGGACTTATGATTAAA+CGG + chr4_1:21615360-21615379 None:intergenic 25.0%
! AAACAACAGATAAAATGGAA+AGG + chr4_1:21615693-21615712 None:intergenic 25.0%
!! GCAACATTAACTATTTGTTA+AGG - chr4_1:21615761-21615780 Msa0540070:intron 25.0%
!!! TGTTTTAAGGTTATTTACAC+CGG + chr4_1:21615813-21615832 None:intergenic 25.0%
! AACAAATAAAAAGGAATGGA+GGG - chr4_1:21615832-21615851 Msa0540070:intron 25.0%
!! CTTTTTCTTACTTGTAGTAT+CGG + chr4_1:21616258-21616277 None:intergenic 25.0%
! GAGTTAAACAAACATTTAAG+TGG + chr4_1:21616380-21616399 None:intergenic 25.0%
! AAACATAAACAGTAACTTTG+GGG - chr4_1:21616434-21616453 Msa0540070:intron 25.0%
! AAGGTTTAAACGTTAATTGA+GGG + chr4_1:21616557-21616576 None:intergenic 25.0%
! AAGTCAAAACATTAACATAG+GGG + chr4_1:21616580-21616599 None:intergenic 25.0%
! GAAGTCAAAACATTAACATA+GGG + chr4_1:21616581-21616600 None:intergenic 25.0%
! TGAAGTCAAAACATTAACAT+AGG + chr4_1:21616582-21616601 None:intergenic 25.0%
! CAAAAAATTACCCATTGTAT+GGG + chr4_1:21616739-21616758 None:intergenic 25.0%
!!! ATCTATGTAGATGTTGTTTT+TGG + chr4_1:21617175-21617194 None:intergenic 25.0%
! CAAAAGTAATTCAAACTTCT+AGG + chr4_1:21617244-21617263 None:intergenic 25.0%
!! TTCTTTGTCATATTTTGCAA+TGG - chr4_1:21617301-21617320 Msa0540070:intron 25.0%
! AAATTAGTCCTTGAAATTGA+AGG + chr4_1:21617653-21617672 None:intergenic 25.0%
!!! TATGTTTTGTTTTTTCTGTC+AGG - chr4_1:21617731-21617750 Msa0540070:CDS 25.0%
!!! TTTTTTCTGTCAGGTTATTA+TGG - chr4_1:21617740-21617759 Msa0540070:CDS 25.0%
!!! TACAGTTTTTTGGACTAAAA+TGG + chr4_1:21617868-21617887 None:intergenic 25.0%
! TGCAATGTATCAATAACAAT+TGG - chr4_1:21617951-21617970 Msa0540070:CDS 25.0%
!! AATTTTTGTCAACTTGCATT+TGG - chr4_1:21618121-21618140 Msa0540070:intron 25.0%
TGATGTAGTGTTGTCAATTA+TGG - chr4_1:21613467-21613486 Msa0540070:three_prime_UTR 30.0%
CCTGATTTCCCTATTTATTA+AGG + chr4_1:21614060-21614079 None:intergenic 30.0%
CCTTAATAAATAGGGAAATC+AGG - chr4_1:21614057-21614076 Msa0540070:three_prime_UTR 30.0%
CATATCTTAGATGATCTCTT+CGG + chr4_1:21614117-21614136 None:intergenic 30.0%
ATAAATATTGAACCCTGTTC+TGG - chr4_1:21614235-21614254 Msa0540070:three_prime_UTR 30.0%
CAAAAAATTGTATGCTGACA+AGG - chr4_1:21614597-21614616 Msa0540070:intron 30.0%
!!! TCTTAGTTCCTGATGTTTTT+TGG - chr4_1:21614626-21614645 Msa0540070:intron 30.0%
!!! CTTAGTTCCTGATGTTTTTT+GGG - chr4_1:21614627-21614646 Msa0540070:intron 30.0%
!! AACTTGCTTTTCTTGATTTC+GGG - chr4_1:21614851-21614870 Msa0540070:intron 30.0%
ATGCTCTTGATTTCTTATCT+AGG - chr4_1:21614971-21614990 Msa0540070:intron 30.0%
TGCTCTTGATTTCTTATCTA+GGG - chr4_1:21614972-21614991 Msa0540070:intron 30.0%
! CATACTATGCGTTGATATTA+AGG - chr4_1:21615438-21615457 Msa0540070:CDS 30.0%
! ATATGCTGATCCCAATTTTA+AGG - chr4_1:21615490-21615509 Msa0540070:CDS 30.0%
! CATATCCCTATTTTGCTAAA+AGG - chr4_1:21615525-21615544 Msa0540070:CDS 30.0%
! AGAAGCCTTTTAGCAAAATA+GGG + chr4_1:21615533-21615552 None:intergenic 30.0%
! TAGAAGCCTTTTAGCAAAAT+AGG + chr4_1:21615534-21615553 None:intergenic 30.0%
! TTTTGCTAAAAGGCTTCTAA+CGG - chr4_1:21615535-21615554 Msa0540070:CDS 30.0%
TCAACAAGTTCAAACAATGA+TGG + chr4_1:21615648-21615667 None:intergenic 30.0%
AACAGATAAAATGGAAAGGA+GGG + chr4_1:21615689-21615708 None:intergenic 30.0%
CAACAAATAAAAAGGAATGG+AGG - chr4_1:21615831-21615850 Msa0540070:intron 30.0%
TTATGATGTCAGAAACTGAA+AGG - chr4_1:21616145-21616164 Msa0540070:intron 30.0%
GAAGGTTTAAACGTTAATTG+AGG + chr4_1:21616558-21616577 None:intergenic 30.0%
CAATTGTGTCCTTAGTTAAA+AGG - chr4_1:21616659-21616678 Msa0540070:CDS 30.0%
GCAAAAAATTACCCATTGTA+TGG + chr4_1:21616740-21616759 None:intergenic 30.0%
! CTATGCATTTTACTGTTTCA+AGG + chr4_1:21616867-21616886 None:intergenic 30.0%
CAAAGAATCGTATTATACAC+AGG - chr4_1:21617051-21617070 Msa0540070:intron 30.0%
!! AATTACTTTTGCGATACTCA+AGG - chr4_1:21617253-21617272 Msa0540070:intron 30.0%
!! TTCGAATATTGATAATGTGG+AGG + chr4_1:21617402-21617421 None:intergenic 30.0%
!! TCATTAAGTTGGTAATATCG+AGG + chr4_1:21617522-21617541 None:intergenic 30.0%
GGACTAAAATGTCATTAAGT+TGG + chr4_1:21617533-21617552 None:intergenic 30.0%
! TGCAATTTCAAGGATCATTT+TGG - chr4_1:21617592-21617611 Msa0540070:intron 30.0%
GATACATTCCTTCAATTTCA+AGG - chr4_1:21617642-21617661 Msa0540070:CDS 30.0%
TTATTATGGACAGAGAAGAT+AGG - chr4_1:21617754-21617773 Msa0540070:CDS 30.0%
TATCATCACAATAAGCATCA+TGG - chr4_1:21617920-21617939 Msa0540070:CDS 30.0%
ATCATCACAATAAGCATCAT+GGG - chr4_1:21617921-21617940 Msa0540070:CDS 30.0%
ACAGAAACATGTGTATGTAA+GGG + chr4_1:21617991-21618010 None:intergenic 30.0%
AACAGAAACATGTGTATGTA+AGG + chr4_1:21617992-21618011 None:intergenic 30.0%
ATTAGAAGGAGAAAATATGC+AGG - chr4_1:21618085-21618104 Msa0540070:intron 30.0%
AGCTGATATGGTCTAAATTG+CGG - chr4_1:21613346-21613365 Msa0540070:three_prime_UTR 35.0%
GTAAAGCACACAAATGATCA+AGG + chr4_1:21613583-21613602 None:intergenic 35.0%
TAGGTCAGGTTTATAAAGCT+CGG - chr4_1:21613730-21613749 Msa0540070:three_prime_UTR 35.0%
TTTATAAAGCTCGGTTGAAG+CGG - chr4_1:21613739-21613758 Msa0540070:three_prime_UTR 35.0%
CATTGAAGAAGCTATAGGAT+TGG - chr4_1:21613800-21613819 Msa0540070:intron 35.0%
TTCTACCTCATTAGAGGTTT+AGG - chr4_1:21613825-21613844 Msa0540070:intron 35.0%
TCTACCTCATTAGAGGTTTA+GGG - chr4_1:21613826-21613845 Msa0540070:intron 35.0%
TCAAGAGCTTAATTATGTGC+AGG - chr4_1:21613926-21613945 Msa0540070:three_prime_UTR 35.0%
!! TATGTGCAGGTTAGTTCTTT+TGG - chr4_1:21613939-21613958 Msa0540070:three_prime_UTR 35.0%
CATTATAAAGACGCCTCATT+GGG + chr4_1:21614282-21614301 None:intergenic 35.0%
GTATAGTCCCAAAAAACATC+AGG + chr4_1:21614637-21614656 None:intergenic 35.0%
ATGATCAAGAAGCAATTGAG+AGG - chr4_1:21614704-21614723 Msa0540070:intron 35.0%
GAAGCGAGATTTGCAATAAT+TGG - chr4_1:21614895-21614914 Msa0540070:intron 35.0%
TCAAAAAAGTTTCGAAGTGC+AGG + chr4_1:21615021-21615040 None:intergenic 35.0%
GCTTAACTTCAAGACAATTG+TGG - chr4_1:21615068-21615087 Msa0540070:intron 35.0%
AACTTCAAGACAATTGTGGA+CGG - chr4_1:21615072-21615091 Msa0540070:intron 35.0%
TATCTGTGTTAGTGCTTCAT+CGG + chr4_1:21615205-21615224 None:intergenic 35.0%
CACTAACACAGATATAGACA+CGG - chr4_1:21615211-21615230 Msa0540070:intron 35.0%
AATATCAACGCATAGTATGC+TGG + chr4_1:21615437-21615456 None:intergenic 35.0%
GCATCTCTTAGATATGGATT+TGG + chr4_1:21615563-21615582 None:intergenic 35.0%
! ATCAGAGCATCTCTTAGATA+TGG + chr4_1:21615569-21615588 None:intergenic 35.0%
!!! TCTGATTGAGTTGCTTTTCA+AGG - chr4_1:21615583-21615602 Msa0540070:CDS 35.0%
!!! ATTGAGTTGCTTTTCAAGGA+TGG - chr4_1:21615587-21615606 Msa0540070:CDS 35.0%
!! TTTTCAAGGATGGAAAGTTC+AGG - chr4_1:21615597-21615616 Msa0540070:CDS 35.0%
CAACAGATAAAATGGAAAGG+AGG + chr4_1:21615690-21615709 None:intergenic 35.0%
AGGAAAAAGACCAATAACTC+CGG - chr4_1:21615791-21615810 Msa0540070:intron 35.0%
GTTATTTACACCGGAGTTAT+TGG + chr4_1:21615804-21615823 None:intergenic 35.0%
!!! TGATTTTTTTCCGATGCAGA+TGG - chr4_1:21615881-21615900 Msa0540070:intron 35.0%
!! CTTGAAAACCTTCTAGTTCA+GGG - chr4_1:21615910-21615929 Msa0540070:intron 35.0%
!! TTGAAAACCTTCTAGTTCAG+GGG - chr4_1:21615911-21615930 Msa0540070:intron 35.0%
TAGAGATTTCTCTGCTAAAG+AGG - chr4_1:21615942-21615961 Msa0540070:intron 35.0%
!! GTATCTGAAGCTTTTACTCT+CGG - chr4_1:21616045-21616064 Msa0540070:CDS 35.0%
TCAAAAAGTCAGGAACATAC+CGG + chr4_1:21616089-21616108 None:intergenic 35.0%
TCAGTTTCTGACATCATAAG+TGG + chr4_1:21616144-21616163 None:intergenic 35.0%
GAGATCAAGTGATTAGGATA+TGG - chr4_1:21616187-21616206 Msa0540070:intron 35.0%
!! TTGCCTTCAATCTGAAGTTT+TGG - chr4_1:21616332-21616351 Msa0540070:intron 35.0%
CAAAACATTAACATAGGGGA+AGG + chr4_1:21616576-21616595 None:intergenic 35.0%
TAACTAAGGACACAATTGTG+AGG + chr4_1:21616657-21616676 None:intergenic 35.0%
!!! TGGGTAATTTTTTGCTGTAC+TGG - chr4_1:21616745-21616764 Msa0540070:CDS 35.0%
CGCTTTCTTATGCAATTACT+TGG - chr4_1:21617145-21617164 Msa0540070:intron 35.0%
!! TATTGATAATGTGGAGGACT+AGG + chr4_1:21617396-21617415 None:intergenic 35.0%
TGATAACAGATTCAGACAGA+GGG + chr4_1:21617463-21617482 None:intergenic 35.0%
! TTGATAACAGATTCAGACAG+AGG + chr4_1:21617464-21617483 None:intergenic 35.0%
AATCAAATTTGTCCCTCTGT+AGG + chr4_1:21617565-21617584 None:intergenic 35.0%
! TTTGGAATATCACCAATACG+AGG - chr4_1:21617610-21617629 Msa0540070:intron 35.0%
TTGGAATATCACCAATACGA+GGG - chr4_1:21617611-21617630 Msa0540070:intron 35.0%
TATCGTCGTCATTATTGATG+CGG - chr4_1:21617897-21617916 Msa0540070:CDS 35.0%
GAAATGCTTATAAGCCCAAA+TGG + chr4_1:21618147-21618166 None:intergenic 35.0%
GCAGAAAAATGCAGCTGATA+TGG - chr4_1:21613334-21613353 Msa0540070:three_prime_UTR 40.0%
TACAACTATGACCGCAATAC+AGG + chr4_1:21613400-21613419 None:intergenic 40.0%
TTGTGTGCTTTACCTTTACC+AGG - chr4_1:21613590-21613609 Msa0540070:three_prime_UTR 40.0%
TTCCCTCTCAATGCATTCAA+AGG + chr4_1:21613646-21613665 None:intergenic 40.0%
GAATGCATTGAGAGGGAATT+AGG - chr4_1:21613648-21613667 Msa0540070:three_prime_UTR 40.0%
CTATAGCTTCTTCAATGCCA+GGG + chr4_1:21613797-21613816 None:intergenic 40.0%
TTGGACTTCTACCTCATTAG+AGG - chr4_1:21613819-21613838 Msa0540070:intron 40.0%
GAAACCCTAAACCTCTAATG+AGG + chr4_1:21613833-21613852 None:intergenic 40.0%
CCATTATAAAGACGCCTCAT+TGG + chr4_1:21614283-21614302 None:intergenic 40.0%
! CCAATGAGGCGTCTTTATAA+TGG - chr4_1:21614280-21614299 Msa0540070:three_prime_UTR 40.0%
CTTTAGGTGTAAGTCGTTCA+CGG + chr4_1:21614312-21614331 None:intergenic 40.0%
TGAACGACTTACACCTAAAG+CGG - chr4_1:21614312-21614331 Msa0540070:three_prime_UTR 40.0%
AACTTGAGCAAAGCTGCAAA+GGG + chr4_1:21614388-21614407 None:intergenic 40.0%
AAACTTGAGCAAAGCTGCAA+AGG + chr4_1:21614389-21614408 None:intergenic 40.0%
!! TAATTTTGACAGGTTCCTGC+AGG - chr4_1:21614552-21614571 Msa0540070:intron 40.0%
!! GAAGGTACTAACGATCGATT+GGG - chr4_1:21614663-21614682 Msa0540070:intron 40.0%
AAGAAGCAATTGAGAGGCAA+GGG - chr4_1:21614710-21614729 Msa0540070:intron 40.0%
GTCTTGGATCTAGTAAACAG+CGG - chr4_1:21614739-21614758 Msa0540070:intron 40.0%
! TCCTCATCCTGGTAATCTTT+TGG - chr4_1:21614813-21614832 Msa0540070:intron 40.0%
! TAATCTTTTGGCAACACCAG+AGG - chr4_1:21614825-21614844 Msa0540070:intron 40.0%
! AATCTTTTGGCAACACCAGA+GGG - chr4_1:21614826-21614845 Msa0540070:intron 40.0%
! AGAAAAGCAAGTTTTCCCTC+TGG + chr4_1:21614844-21614863 None:intergenic 40.0%
ATTGCAAATCTCGCTTCTTC+TGG + chr4_1:21614892-21614911 None:intergenic 40.0%
TTTCGAAGTGCAGGAACAAT+TGG + chr4_1:21615012-21615031 None:intergenic 40.0%
ATGTTAGTGTTGTGTCTGTG+TGG - chr4_1:21615276-21615295 Msa0540070:intron 40.0%
! ACACCTTCAATCAAAAGTGC+CGG - chr4_1:21615302-21615321 Msa0540070:intron 40.0%
TCAGAGTCTGCAAGAAAGTT+AGG + chr4_1:21615376-21615395 None:intergenic 40.0%
ATTAAGGTCTCTCACTGTTC+TGG - chr4_1:21615454-21615473 Msa0540070:CDS 40.0%
GCAGCAAGCACCTTAAAATT+GGG + chr4_1:21615503-21615522 None:intergenic 40.0%
TGCAGCAAGCACCTTAAAAT+TGG + chr4_1:21615504-21615523 None:intergenic 40.0%
! TTTTCCGATGCAGATGGAAT+AGG - chr4_1:21615887-21615906 Msa0540070:intron 40.0%
!! GCTTGAAAACCTTCTAGTTC+AGG - chr4_1:21615909-21615928 Msa0540070:intron 40.0%
!! AAGGTATTGTTGAGTCCTGA+TGG - chr4_1:21615982-21616001 Msa0540070:CDS 40.0%
GCACAATTTCCGAAACATAC+CGG - chr4_1:21616067-21616086 Msa0540070:CDS 40.0%
AGGAACATACCGGTATGTTT+CGG + chr4_1:21616079-21616098 None:intergenic 40.0%
! GGTATGTTCCTGACTTTTTG+AGG - chr4_1:21616088-21616107 Msa0540070:CDS 40.0%
ACAAGGTTCCTCAAAAAGTC+AGG + chr4_1:21616099-21616118 None:intergenic 40.0%
TTGAGGAACCTTGTCTTCAA+TGG - chr4_1:21616105-21616124 Msa0540070:CDS 40.0%
TTGCATTGCCATTGAAGACA+AGG + chr4_1:21616116-21616135 None:intergenic 40.0%
TGTCTTCAATGGCAATGCAA+AGG - chr4_1:21616116-21616135 Msa0540070:CDS 40.0%
AGCTCAGAGATCAAGTGATT+AGG - chr4_1:21616181-21616200 Msa0540070:intron 40.0%
!! AGTATCGGTAGCAAAAGAGA+TGG + chr4_1:21616243-21616262 None:intergenic 40.0%
GCACCAAAACTTCAGATTGA+AGG + chr4_1:21616338-21616357 None:intergenic 40.0%
!! TCCTTAGTTAAAAGGCGCTT+CGG - chr4_1:21616667-21616686 Msa0540070:CDS 40.0%
CATAGATTGTGTCACAGCAA+AGG - chr4_1:21617188-21617207 Msa0540070:intron 40.0%
! TTTTGCAATGGCGTCGTTAT+AGG - chr4_1:21617313-21617332 Msa0540070:intron 40.0%
TCCCTACAAATACCTACAGA+GGG - chr4_1:21617550-21617569 Msa0540070:intron 40.0%
TCCCTCTGTAGGTATTTGTA+GGG + chr4_1:21617554-21617573 None:intergenic 40.0%
AGAAGGAGAAAATATGCAGG+TGG - chr4_1:21618088-21618107 Msa0540070:intron 40.0%
TCAACTTGCATTTGGCCATT+TGG - chr4_1:21618129-21618148 Msa0540070:intron 40.0%
CAACTTGCATTTGGCCATTT+GGG - chr4_1:21618130-21618149 Msa0540070:intron 40.0%
AGACCTCATCTCCTGTATTG+CGG - chr4_1:21613386-21613405 Msa0540070:three_prime_UTR 45.0%
GTGCTTTACCTTTACCAGGA+TGG - chr4_1:21613594-21613613 Msa0540070:three_prime_UTR 45.0%
TTGGCAAACCATCCTGGTAA+AGG + chr4_1:21613605-21613624 None:intergenic 45.0%
GAAATGTTGGCAAACCATCC+TGG + chr4_1:21613611-21613630 None:intergenic 45.0%
TTTGCCAACATTTCCTGACG+AGG - chr4_1:21613617-21613636 Msa0540070:three_prime_UTR 45.0%
ACGCCTTTGAATGCATTGAG+AGG - chr4_1:21613640-21613659 Msa0540070:three_prime_UTR 45.0%
CGCCTTTGAATGCATTGAGA+GGG - chr4_1:21613641-21613660 Msa0540070:three_prime_UTR 45.0%
TATCGGCGATGGAGATATTG+TGG + chr4_1:21613697-21613716 None:intergenic 45.0%
CCTAAACTAGCAGCAGCTAT+CGG + chr4_1:21613714-21613733 None:intergenic 45.0%
CCTATAGCTTCTTCAATGCC+AGG + chr4_1:21613798-21613817 None:intergenic 45.0%
! CCTGGCATTGAAGAAGCTAT+AGG - chr4_1:21613795-21613814 Msa0540070:intron 45.0%
! GTAGGTGTTGTACCAGAACA+GGG + chr4_1:21614250-21614269 None:intergenic 45.0%
! TGTAGGTGTTGTACCAGAAC+AGG + chr4_1:21614251-21614270 None:intergenic 45.0%
ACCTAAAGCGGACATTACCT+CGG - chr4_1:21614324-21614343 Msa0540070:three_prime_UTR 45.0%
TTGGGACTATACAAGTGCGA+AGG - chr4_1:21614645-21614664 Msa0540070:intron 45.0%
!! CGAAGGTACTAACGATCGAT+TGG - chr4_1:21614662-21614681 Msa0540070:intron 45.0%
CAAGAAGCAATTGAGAGGCA+AGG - chr4_1:21614709-21614728 Msa0540070:intron 45.0%
GCCAAAAGATTACCAGGATG+AGG + chr4_1:21614817-21614836 None:intergenic 45.0%
! GGTGTTGCCAAAAGATTACC+AGG + chr4_1:21614823-21614842 None:intergenic 45.0%
TAACCGAGACTACGAAGCTA+TGG - chr4_1:21614936-21614955 Msa0540070:intron 45.0%
AAGACAATTGTGGACGGTCT+CGG - chr4_1:21615078-21615097 Msa0540070:intron 45.0%
ATGCTGGAACTGCAAACAGA+CGG + chr4_1:21615421-21615440 None:intergenic 45.0%
CAAGCCTATTCCATCTGCAT+CGG + chr4_1:21615894-21615913 None:intergenic 45.0%
! CTTTTCTCCCCTGAACTAGA+AGG + chr4_1:21615921-21615940 None:intergenic 45.0%
TACCTTCAGGACAGGTTGTA+AGG + chr4_1:21615968-21615987 None:intergenic 45.0%
CTCAACAATACCTTCAGGAC+AGG + chr4_1:21615976-21615995 None:intergenic 45.0%
CAGGACTCAACAATACCTTC+AGG + chr4_1:21615981-21616000 None:intergenic 45.0%
TTCCTCAGAACTTCACCATC+AGG + chr4_1:21616000-21616019 None:intergenic 45.0%
GGCAAAGACACAAGACAGAA+CGG + chr4_1:21616317-21616336 None:intergenic 45.0%
!!! TTTGCTGCACTGCTTTTTCG+AGG - chr4_1:21616604-21616623 Msa0540070:CDS 45.0%
!! ACCGAAGCGCCTTTTAACTA+AGG + chr4_1:21616671-21616690 None:intergenic 45.0%
!! TTAGTTAAAAGGCGCTTCGG+TGG - chr4_1:21616670-21616689 Msa0540070:CDS 45.0%
!! TAGTTAAAAGGCGCTTCGGT+GGG - chr4_1:21616671-21616690 Msa0540070:CDS 45.0%
TTGTATGGGATTCGAGGCTA+AGG + chr4_1:21616725-21616744 None:intergenic 45.0%
TAGCCTCGAATCCCATACAA+TGG - chr4_1:21616725-21616744 Msa0540070:CDS 45.0%
AGCCTCGAATCCCATACAAT+GGG - chr4_1:21616726-21616745 Msa0540070:CDS 45.0%
TACCCATTGTATGGGATTCG+AGG + chr4_1:21616731-21616750 None:intergenic 45.0%
ATCCTTACTGATCCGGACAA+GGG + chr4_1:21616842-21616861 None:intergenic 45.0%
CAAGGTCATCCTTACTGATC+CGG + chr4_1:21616849-21616868 None:intergenic 45.0%
TGTGTCACAGCAAAGGCTAA+AGG - chr4_1:21617195-21617214 Msa0540070:intron 45.0%
GTCCCTACAAATACCTACAG+AGG - chr4_1:21617549-21617568 Msa0540070:intron 45.0%
GTCCCTCTGTAGGTATTTGT+AGG + chr4_1:21617555-21617574 None:intergenic 45.0%
ATATCACCAATACGAGGGAC+TGG - chr4_1:21617616-21617635 Msa0540070:intron 45.0%
ATCAATCCAGTCCCTCGTAT+TGG + chr4_1:21617625-21617644 None:intergenic 45.0%
AGGAGAAAATATGCAGGTGG+TGG - chr4_1:21618091-21618110 Msa0540070:intron 45.0%
TGACCGCAATACAGGAGATG+AGG + chr4_1:21613392-21613411 None:intergenic 50.0%
! CCGATAGCTGCTGCTAGTTT+AGG - chr4_1:21613711-21613730 Msa0540070:three_prime_UTR 50.0%
! AGCTGCTGCTAGTTTAGGTC+AGG - chr4_1:21613716-21613735 Msa0540070:three_prime_UTR 50.0%
TAAAGCTCGGTTGAAGCGGT+CGG - chr4_1:21613743-21613762 Msa0540070:three_prime_UTR 50.0%
!! CTCATTGGGTTGAGGAGTGT+AGG + chr4_1:21614268-21614287 None:intergenic 50.0%
CTACACTCCTCAACCCAATG+AGG - chr4_1:21614266-21614285 Msa0540070:three_prime_UTR 50.0%
! AAAGACGCCTCATTGGGTTG+AGG + chr4_1:21614276-21614295 None:intergenic 50.0%
TCCGAGGTAATGTCCGCTTT+AGG + chr4_1:21614328-21614347 None:intergenic 50.0%
! TTTTGACAGGTTCCTGCAGG+AGG - chr4_1:21614555-21614574 Msa0540070:intron 50.0%
TTTGACAGGTTCCTGCAGGA+GGG - chr4_1:21614556-21614575 Msa0540070:intron 50.0%
! TTGCATTTTGTCCCTCCTGC+AGG + chr4_1:21614570-21614589 None:intergenic 50.0%
TGCAGGAGGGACAAAATGCA+AGG - chr4_1:21614569-21614588 Msa0540070:intron 50.0%
CTAACGATCGATTGGGTCGA+AGG - chr4_1:21614670-21614689 Msa0540070:intron 50.0%
CTCAGACAACTGCTCGAGTA+CGG - chr4_1:21614775-21614794 Msa0540070:intron 50.0%
TTCCATGCAGATCCTCATCC+TGG - chr4_1:21614802-21614821 Msa0540070:intron 50.0%
TACCAGGATGAGGATCTGCA+TGG + chr4_1:21614807-21614826 None:intergenic 50.0%
GAGCCATAGCTTCGTAGTCT+CGG + chr4_1:21614942-21614961 None:intergenic 50.0%
CGATGCTGACATTGACACAC+AGG - chr4_1:21615237-21615256 Msa0540070:intron 50.0%
!! GCACCGGCACTTTTGATTGA+AGG + chr4_1:21615308-21615327 None:intergenic 50.0%
ATCTGCATCCTGTGTAGCAC+CGG + chr4_1:21615324-21615343 None:intergenic 50.0%
! AGGTCTCTCACTGTTCTGGA+AGG - chr4_1:21615458-21615477 Msa0540070:CDS 50.0%
! GTCCTGATGGTGAAGTTCTG+AGG - chr4_1:21615995-21616014 Msa0540070:CDS 50.0%
TCCTTACTGATCCGGACAAG+GGG + chr4_1:21616841-21616860 None:intergenic 50.0%
CATCCTTACTGATCCGGACA+AGG + chr4_1:21616843-21616862 None:intergenic 50.0%
AACCTGAGGCCCGTAAACTT+GGG - chr4_1:21617083-21617102 Msa0540070:intron 50.0%
AGGAGATGAGGTCTCCGCAA+CGG + chr4_1:21613380-21613399 None:intergenic 55.0%
GCGTCCTCGTCAGGAAATGT+TGG + chr4_1:21613624-21613643 None:intergenic 55.0%
!! CATTCAAAGGCGTCCTCGTC+AGG + chr4_1:21613633-21613652 None:intergenic 55.0%
AAAGCTCGGTTGAAGCGGTC+GGG - chr4_1:21613744-21613763 Msa0540070:three_prime_UTR 55.0%
GGGCAAAGTTGTTGCGGTCA+AGG - chr4_1:21613764-21613783 Msa0540070:three_prime_UTR 55.0%
CTTCTTCAATGCCAGGGCGT+TGG + chr4_1:21613791-21613810 None:intergenic 55.0%
GCGGACATTACCTCGGAATG+CGG - chr4_1:21614331-21614350 Msa0540070:three_prime_UTR 55.0%
CATTACCTCGGAATGCGGTG+TGG - chr4_1:21614336-21614355 Msa0540070:three_prime_UTR 55.0%
AATGCGGTGTGGCGTACTTG+AGG - chr4_1:21614347-21614366 Msa0540070:three_prime_UTR 55.0%
GAGGCAAGGGCTTAACGTCT+TGG - chr4_1:21614723-21614742 Msa0540070:intron 55.0%
!! CAAAAGTGCCGGTGCTACAC+AGG - chr4_1:21615313-21615332 Msa0540070:intron 55.0%
GGCCTTACAACCTGTCCTGA+AGG - chr4_1:21615963-21615982 Msa0540070:intron 55.0%
GTACTGGAACAGTAGCCCTG+CGG - chr4_1:21616761-21616780 Msa0540070:CDS 55.0%
GAGGCTAAGGAGCTAGAGGA+CGG - chr4_1:21616786-21616805 Msa0540070:CDS 55.0%
TCAGCCCACGTGTGTGGTTT+AGG - chr4_1:21616813-21616832 Msa0540070:CDS 55.0%
CTTACTGATCCGGACAAGGG+GGG + chr4_1:21616839-21616858 None:intergenic 55.0%
CCTTACTGATCCGGACAAGG+GGG + chr4_1:21616840-21616859 None:intergenic 55.0%
ACAGGTGCTTCAGCAACCTG+AGG - chr4_1:21617069-21617088 Msa0540070:intron 55.0%
CAACCTGAGGCCCGTAAACT+TGG - chr4_1:21617082-21617101 Msa0540070:intron 55.0%
ACCTGAGGCCCGTAAACTTG+GGG - chr4_1:21617084-21617103 Msa0540070:intron 55.0%
AACACGCCCCCCAAGTTTAC+GGG + chr4_1:21617095-21617114 None:intergenic 55.0%
CAACACGCCCCCCAAGTTTA+CGG + chr4_1:21617096-21617115 None:intergenic 55.0%
! AAACTTGGGGGGCGTGTTGT+CGG - chr4_1:21617097-21617116 Msa0540070:intron 55.0%
TTGCGGCTGTGATGCCGTTG+CGG - chr4_1:21613363-21613382 Msa0540070:three_prime_UTR 60.0%
CTAGCAGCAGCTATCGGCGA+TGG + chr4_1:21613708-21613727 None:intergenic 60.0%
GCGGTCGGGCAAAGTTGTTG+CGG - chr4_1:21613758-21613777 Msa0540070:three_prime_UTR 60.0%
CGGTGTGGCGTACTTGAGGA+TGG - chr4_1:21614351-21614370 Msa0540070:three_prime_UTR 60.0%
GGTCGAGGCTAAGGAGCTAG+AGG - chr4_1:21616782-21616801 Msa0540070:CDS 60.0%
GGGGCCTAAACCACACACGT+GGG + chr4_1:21616820-21616839 None:intergenic 60.0%
TGGTTTAGGCCCCCCTTGTC+CGG - chr4_1:21616827-21616846 Msa0540070:CDS 60.0%
CCCCCTTGTCCGGATCAGTA+AGG - chr4_1:21616837-21616856 Msa0540070:CDS 60.0%
CCTGAGGCCCGTAAACTTGG+GGG - chr4_1:21617085-21617104 Msa0540070:intron 60.0%
CTGAGGCCCGTAAACTTGGG+GGG - chr4_1:21617086-21617105 Msa0540070:intron 60.0%
GTACGCCACACCGCATTCCG+AGG + chr4_1:21614344-21614363 None:intergenic 65.0%
GAACAGTAGCCCTGCGGTCG+AGG - chr4_1:21616767-21616786 Msa0540070:CDS 65.0%
TAGCCCTGCGGTCGAGGCTA+AGG - chr4_1:21616773-21616792 Msa0540070:CDS 65.0%
GCTCCTTAGCCTCGACCGCA+GGG + chr4_1:21616779-21616798 None:intergenic 65.0%
AGCTCCTTAGCCTCGACCGC+AGG + chr4_1:21616780-21616799 None:intergenic 65.0%
GGCTTGTCAGCCCACGTGTG+TGG - chr4_1:21616807-21616826 Msa0540070:CDS 65.0%
GGGGGCCTAAACCACACACG+TGG + chr4_1:21616821-21616840 None:intergenic 65.0%
CCCCCAAGTTTACGGGCCTC+AGG + chr4_1:21617088-21617107 None:intergenic 65.0%
GCGGTCAAGGTCCAACGCCC+TGG - chr4_1:21613777-21613796 Msa0540070:three_prime_UTR 70.0%
! CTTGGGGGGCGTGTTGTCGG+TGG - chr4_1:21617100-21617119 Msa0540070:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 21613332 21618250 21613332 ID=Msa0540070;Name=Msa0540070
chr4_1 mRNA 21613332 21618250 21613332 ID=Msa0540070-mRNA-1;Parent=Msa0540070;Name=Msa0540070-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.66|0.71|0.85|0.83|0.71|7|1024|529
chr4_1 exon 21613332 21613813 21613332 ID=Msa0540070-mRNA-1:exon:6167;Parent=Msa0540070-mRNA-1
chr4_1 exon 21613848 21614509 21613848 ID=Msa0540070-mRNA-1:exon:6166;Parent=Msa0540070-mRNA-1
chr4_1 exon 21615316 21615682 21615316 ID=Msa0540070-mRNA-1:exon:6165;Parent=Msa0540070-mRNA-1
chr4_1 exon 21615964 21616150 21615964 ID=Msa0540070-mRNA-1:exon:6164;Parent=Msa0540070-mRNA-1
chr4_1 exon 21616453 21617008 21616453 ID=Msa0540070-mRNA-1:exon:6163;Parent=Msa0540070-mRNA-1
chr4_1 exon 21617635 21617970 21617635 ID=Msa0540070-mRNA-1:exon:6162;Parent=Msa0540070-mRNA-1
chr4_1 exon 21618227 21618250 21618227 ID=Msa0540070-mRNA-1:exon:6161;Parent=Msa0540070-mRNA-1
chr4_1 CDS 21618227 21618250 21618227 ID=Msa0540070-mRNA-1:cds;Parent=Msa0540070-mRNA-1
chr4_1 CDS 21617635 21617970 21617635 ID=Msa0540070-mRNA-1:cds;Parent=Msa0540070-mRNA-1
chr4_1 CDS 21616453 21617008 21616453 ID=Msa0540070-mRNA-1:cds;Parent=Msa0540070-mRNA-1
chr4_1 CDS 21615964 21616150 21615964 ID=Msa0540070-mRNA-1:cds;Parent=Msa0540070-mRNA-1
chr4_1 CDS 21615316 21615682 21615316 ID=Msa0540070-mRNA-1:cds;Parent=Msa0540070-mRNA-1
chr4_1 CDS 21614390 21614509 21614390 ID=Msa0540070-mRNA-1:cds;Parent=Msa0540070-mRNA-1
chr4_1 three_prime_UTR 21613848 21614389 21613848 ID=Msa0540070-mRNA-1:three_prime_utr;Parent=Msa0540070-mRNA-1
chr4_1 three_prime_UTR 21613332 21613813 21613332 ID=Msa0540070-mRNA-1:three_prime_utr;Parent=Msa0540070-mRNA-1
Gene Sequence

>Msa0540070

ATGCAGAAAAATGCAGCTGATATGGATGGTTTGCCAACATTTCCTGACGAGGACGCCTTTGAATGCATTGAGAGGGAATTAGGTTTATCTCTCGACTCTATTTTCTCCACAATATCTCCATCGCCGATAGCTGCTGCTAGTTTAGGTCAGGTTTATAAAGCTCGGTTGAAGCGGTCGGGCAAAGTTGTTGCGGTCAAGGTCCAACGCCCTGGCATTGAAGAAGCTATAGGATTGGACTTCTACCTCATTAGAGGTTTAGGGTTTCTAATAAATAAATATGTGGATCGAATCACAACTGATGTTGTTGCACTTATTGATGAGTTCGCATGTAGAGTCTTTCAAGAGCTTAATTATGTGCAGGAGGGACAAAATGCAAGGAAATTCAAAAAATTGTATGCTGACAAGGAAGATATCTTAGTTCCTGATGTTTTTTGGGACTATACAAGTGCGAAGGTACTAACGATCGATTGGGTCGAAGGAGTAAAACTAAATGATCAAGAAGCAATTGAGAGGCAAGGGCTTAACGTCTTGGATCTAGTAAACAGCGGAATACAGTGCAGTCTCAGACAACTGCTCGAGTACGGATATTTCCATGCAGATCCTCATCCTGGTAATCTTTTGGCAACACCAGAGGGAAAACTTGCTTTTCTTGATTTCGGGATGATGAGTGAGACTCCAGAAGAAGCGAGATTTGCAATAATTGGTCACGTTGTTCACTTAGTTAACCGAGACTACGAAGCTATGGCTCAAGACTATTATGCTCTTGATTTCTTATCTAGGGATATTGATGTATCTCCAATTGTTCCTGCACTTCGAAACTTTTTTGACGATGCACTTAATTATACTGTTAGCGAGCTTAACTTCAAGACAATTGTGGACGGTCTCGGAAATGTTTTGTATCAATATCCATTTAATGTTCCAGCATACTATGCGTTGATATTAAGGTCTCTCACTGTTCTGGAAGGTTTAGCACTATATGCTGATCCCAATTTTAAGGTGCTTGCTGCATCATATCCCTATTTTGCTAAAAGGCTTCTAACGGATCCAAATCCATATCTAAGAGATGCTCTGATTGAGTTGCTTTTCAAGGATGGAAAGTTCAGATGGAATAGGCTTGAAAACCTTCTAGTTCAGGGGAGAAAAGATAGAGATTTCTCTGCTAAAGAGGCCTTACAACCTGTCCTGAAGGTATTGTTGAGTCCTGATGGTGAAGTTCTGAGGAATCTAGTTATCAAAGAAGCTATTCGTGTATCTGAAGCTTTTACTCTCGGCACAATTTCCGAAACATACCGGTATGTTCCTGACTTTTTGAGGAACCTTGTCTTCAATGGCAATGCAAAGGATCCACTTATGATGTCAGAAACTGAAAGGCAAAGCATCATAGAGCTCAGAGATCAAGTGATTAGGATATGGAGACTTCTGCAATCATCTAATGATTTTGATCCATCTCTTTTGCTACCGATACTACAAGTGCTTCAGCAACCTGAGGCCCGTAAACTTGGGGGGCGTGTTGTCGGTGGAATCACTCAACGACTTGCAGCACGCTTTCTTATGCAATTACTTGGAGCACCAAAAACAACATCTACATAG

Protein sequence

>Msa0540070

MQKNAADMDGLPTFPDEDAFECIERELGLSLDSIFSTISPSPIAAASLGQVYKARLKRSGKVVAVKVQRPGIEEAIGLDFYLIRGLGFLINKYVDRITTDVVALIDEFACRVFQELNYVQEGQNARKFKKLYADKEDILVPDVFWDYTSAKVLTIDWVEGVKLNDQEAIERQGLNVLDLVNSGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMAQDYYALDFLSRDIDVSPIVPALRNFFDDALNYTVSELNFKTIVDGLGNVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFRWNRLENLLVQGRKDRDFSAKEALQPVLKVLLSPDGEVLRNLVIKEAIRVSEAFTLGTISETYRYVPDFLRNLVFNGNAKDPLMMSETERQSIIELRDQVIRIWRLLQSSNDFDPSLLLPILQVLQQPEARKLGGRVVGGITQRLAARFLMQLLGAPKTTST*