AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506830 MtrunA17_Chr3g0081211 96.112 463 18 0 1 463 482 944 0.0 866
Msa0506830 MtrunA17_Chr3g0081391 75.378 463 114 0 1 463 483 945 0.0 707
Msa0506830 MtrunA17_Chr3g0081191 75.599 459 112 0 1 459 479 937 0.0 690
Msa0506830 MtrunA17_Chr3g0081341 73.434 463 123 0 1 463 547 1009 0.0 676
Msa0506830 MtrunA17_Chr3g0081371 73.763 465 119 2 1 463 488 951 0.0 672
Msa0506830 MtrunA17_Chr3g0081361 69.474 475 137 2 1 474 488 955 0.0 660
Msa0506830 MtrunA17_Chr3g0081181 67.819 463 149 0 1 463 467 929 0.0 593
Msa0506830 MtrunA17_Chr3g0080741 53.362 461 214 1 1 461 486 945 1.67e-169 502
Msa0506830 MtrunA17_Chr3g0094301 55.531 461 204 1 1 461 484 943 1.09e-168 500
Msa0506830 MtrunA17_Chr7g0229761 55.531 461 204 1 1 461 484 943 1.09e-168 500
Msa0506830 MtrunA17_Chr3g0080631 53.145 461 215 1 1 461 439 898 2.21e-168 498
Msa0506830 MtrunA17_Chr3g0080721 52.928 461 214 2 1 461 222 679 8.51e-165 482
Msa0506830 MtrunA17_Chr3g0080601 55.580 457 202 1 1 457 483 938 3.50e-162 484
Msa0506830 MtrunA17_Chr3g0080791 55.748 461 202 2 1 461 484 942 5.64e-161 480
Msa0506830 MtrunA17_Chr3g0080771 54.447 461 208 2 1 461 484 942 2.88e-160 478
Msa0506830 MtrunA17_Chr3g0080731 52.954 457 214 1 1 457 484 939 6.61e-159 475
Msa0506830 MtrunA17_Chr3g0080751 51.634 459 221 1 1 459 485 942 1.05e-156 469
Msa0506830 MtrunA17_Chr3g0080651 53.796 461 209 3 1 461 402 858 3.31e-149 447
Msa0506830 MtrunA17_Chr1g0151481 49.556 450 219 6 1 447 485 929 1.15e-124 386
Msa0506830 MtrunA17_Chr3g0101321 44.470 443 229 6 1 439 474 903 1.54e-111 351
Msa0506830 MtrunA17_Chr3g0081201 72.889 225 61 0 235 459 2 226 2.09e-111 329
Msa0506830 MtrunA17_Chr3g0101011 44.944 445 234 8 1 441 496 933 3.58e-102 327
Msa0506830 MtrunA17_Chr3g0112511 38.530 449 257 5 1 446 473 905 1.68e-84 279
Msa0506830 MtrunA17_Chr5g0410001 40.492 447 250 9 1 439 468 906 7.67e-84 278
Msa0506830 MtrunA17_Chr5g0410031 39.911 451 251 9 1 439 469 911 9.39e-84 278
Msa0506830 MtrunA17_Chr3g0101201 38.938 452 253 10 1 441 481 920 1.31e-83 277
Msa0506830 MtrunA17_Chr5g0409991 40.315 444 256 8 1 439 463 902 8.55e-83 275
Msa0506830 MtrunA17_Chr5g0410021 40.090 444 257 8 1 439 465 904 3.80e-82 273
Msa0506830 MtrunA17_Chr5g0409971 38.806 469 275 9 1 464 468 929 6.18e-81 270
Msa0506830 MtrunA17_Chr3g0101231 39.121 455 244 10 4 441 490 928 8.22e-81 269
Msa0506830 MtrunA17_Chr3g0101331 40.559 429 227 8 1 414 490 905 8.51e-81 269
Msa0506830 MtrunA17_Chr3g0084361 53.101 258 120 1 200 457 1 257 3.44e-80 250
Msa0506830 MtrunA17_Chr3g0101361 37.288 472 250 9 1 441 312 768 4.53e-79 262
Msa0506830 MtrunA17_Chr3g0101271 38.255 447 254 6 1 441 456 886 1.16e-78 263
Msa0506830 MtrunA17_Chr3g0101391 37.237 427 244 5 1 415 164 578 1.39e-78 256
Msa0506830 MtrunA17_Chr3g0101241 38.255 447 254 6 1 441 456 886 3.46e-78 261
Msa0506830 MtrunA17_Chr3g0101251 36.463 458 256 8 1 441 443 882 9.95e-76 255
Msa0506830 MtrunA17_Chr3g0101181 37.557 442 244 7 1 422 487 916 4.00e-73 248
Msa0506830 MtrunA17_Chr3g0100961 38.565 446 246 11 1 441 482 904 4.23e-73 248
Msa0506830 MtrunA17_Chr3g0100701 38.085 449 253 9 1 445 312 739 1.69e-72 244
Msa0506830 MtrunA17_Chr3g0101221 36.980 457 255 10 1 441 483 922 3.16e-72 246
Msa0506830 MtrunA17_Chr3g0100791 38.863 422 242 5 1 419 17 425 1.94e-71 234
Msa0506830 MtrunA17_Chr3g0100731 37.528 445 258 7 1 441 237 665 2.04e-71 239
Msa0506830 MtrunA17_Chr5g0444301 39.437 426 235 7 1 418 39 449 3.28e-71 233
Msa0506830 MtrunA17_Chr3g0100831 37.360 447 256 9 1 441 477 905 4.00e-71 243
Msa0506830 MtrunA17_Chr1g0189351 37.471 435 237 9 1 414 479 899 1.27e-68 236
Msa0506830 MtrunA17_Chr1g0189281 37.662 385 216 7 33 406 2 373 3.39e-67 220
Msa0506830 MtrunA17_Chr3g0100851 37.915 422 246 5 1 419 358 766 1.30e-64 223
Msa0506830 MtrunA17_Chr3g0100801 37.569 362 194 7 1 358 438 771 7.69e-54 193
Msa0506830 MtrunA17_Chr1g0160871 57.419 155 62 1 155 309 1 151 5.10e-52 173
Msa0506830 MtrunA17_Chr3g0100681 38.411 302 169 5 1 299 295 582 5.09e-49 177
Msa0506830 MtrunA17_Chr3g0081841 77.143 105 24 0 237 341 383 487 3.81e-46 167
Msa0506830 MtrunA17_Chr3g0081841 63.478 115 42 0 1 115 232 346 7.52e-39 147
Msa0506830 MtrunA17_Chr3g0084351 55.479 146 65 0 1 146 409 554 3.49e-45 166
Msa0506830 MtrunA17_Chr3g0100911 41.909 241 125 4 149 386 2 230 1.91e-44 155
Msa0506830 MtrunA17_Chr3g0100971 39.179 268 148 4 1 265 479 734 1.65e-43 164
Msa0506830 MtrunA17_Chr3g0100761 38.806 268 149 4 1 265 439 694 1.22e-42 160
Msa0506830 MtrunA17_Chr2g0299001 28.850 461 287 14 1 442 486 924 1.06e-37 147
Msa0506830 MtrunA17_Chr5g0404741 26.856 458 298 9 1 439 466 905 2.49e-30 125
Msa0506830 MtrunA17_Chr1g0197241 27.212 452 282 10 1 417 1097 1536 1.35e-29 123
Msa0506830 MtrunA17_Chr1g0189321 42.169 166 88 4 1 160 76 239 8.18e-29 114
Msa0506830 MtrunA17_Chr1g0197181 27.957 465 281 14 1 417 51 509 4.44e-27 114
Msa0506830 MtrunA17_Chr7g0219851 25.996 477 296 12 4 440 476 935 5.38e-27 115
Msa0506830 MtrunA17_Chr1g0197201 26.940 464 286 13 1 417 891 1348 4.16e-25 109
Msa0506830 MtrunA17_Chr1g0149071 41.615 161 89 2 204 360 293 452 6.82e-25 107
Msa0506830 MtrunA17_Chr1g0149071 45.349 86 47 0 1 86 182 267 1.21e-14 76.3
Msa0506830 MtrunA17_Chr1g0189331 45.794 107 54 1 209 311 3 109 2.19e-22 92.0
Msa0506830 MtrunA17_Chr3g0101211 36.567 134 85 0 1 134 270 403 3.52e-21 95.5
Msa0506830 MtrunA17_Chr3g0101161 36.181 199 109 4 249 441 2 188 1.44e-19 86.7
Msa0506830 MtrunA17_Chr4g0037421 32.086 187 114 6 1 178 527 709 2.03e-17 85.9
Msa0506830 MtrunA17_Chr3g0085451 27.455 448 260 22 8 415 452 874 3.15e-16 82.0
Msa0506830 MtrunA17_Chr3g0087731 31.304 230 128 7 99 313 364 578 1.34e-15 79.7
Msa0506830 MtrunA17_Chr3g0084031 28.308 325 188 11 4 302 477 782 4.07e-15 78.6
Msa0506830 MtrunA17_Chr3g0085561 28.533 375 211 19 79 418 529 881 5.41e-15 78.2
Msa0506830 MtrunA17_Chr8g0352831 29.880 251 137 11 4 227 485 723 7.18e-14 74.7
Msa0506830 MtrunA17_Chr3g0085331 26.087 460 258 23 8 418 480 906 8.13e-14 74.3
Msa0506830 MtrunA17_Chr8g0344071 25.000 448 280 12 1 421 734 1152 9.07e-14 74.3
Msa0506830 MtrunA17_Chr5g0410161 29.918 244 134 8 97 314 684 916 1.39e-13 73.6
Msa0506830 MtrunA17_Chr3g0085471 28.832 274 162 8 79 339 554 807 3.41e-13 72.4
Msa0506830 MtrunA17_Chr7g0257541 26.185 443 255 16 3 441 488 862 3.79e-13 72.0
Msa0506830 MtrunA17_Chr3g0082791 34.722 216 115 8 99 302 575 776 7.77e-13 71.2
Msa0506830 MtrunA17_Chr5g0433771 25.499 451 244 17 1 439 481 851 1.09e-12 70.5
Msa0506830 MtrunA17_Chr4g0010201 27.429 350 195 16 4 317 462 788 1.36e-12 70.5
Msa0506830 MtrunA17_Chr3g0085501 28.916 332 186 14 99 405 584 890 2.13e-12 69.7
Msa0506830 MtrunA17_Chr4g0009781 27.542 236 142 7 4 224 462 683 5.67e-12 68.6
Msa0506830 MtrunA17_Chr1g0165221 24.932 365 222 12 100 433 314 657 5.95e-12 68.6
Msa0506830 MtrunA17_Chr5g0410261 29.958 237 136 7 97 314 569 794 6.99e-12 68.2
Msa0506830 MtrunA17_Chr1g0189341 41.860 86 48 1 329 414 1 84 7.88e-12 62.4
Msa0506830 MtrunA17_Chr5g0410351 31.174 247 126 10 97 314 537 768 1.70e-11 67.0
Msa0506830 MtrunA17_Chr7g0221481 36.416 173 82 7 79 236 536 695 2.48e-11 66.2
Msa0506830 MtrunA17_Chr5g0410481 27.126 247 149 7 87 314 517 751 3.39e-11 65.9
Msa0506830 MtrunA17_Chr3g0084051 33.180 217 117 8 99 302 574 775 3.57e-11 65.9
Msa0506830 MtrunA17_Chr3g0089991 27.731 357 212 15 2 332 476 812 4.25e-11 65.9
Msa0506830 MtrunA17_Chr5g0410301 30.672 238 132 11 97 314 538 762 5.32e-11 65.5
Msa0506830 MtrunA17_Chr3g0084971 28.528 326 170 10 102 414 565 840 7.17e-11 65.1
Msa0506830 MtrunA17_Chr3g0086741 26.490 302 178 11 26 302 510 792 7.59e-11 64.7
Msa0506830 MtrunA17_Chr7g0232211 29.260 311 175 13 119 411 115 398 8.21e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506830 AT3G07040.1 30.856 444 290 9 1 439 478 909 7.41e-53 192
Msa0506830 AT5G43470.3 26.638 458 294 13 1 439 467 901 4.12e-28 119
Msa0506830 AT5G43470.2 26.638 458 294 13 1 439 467 901 4.12e-28 119
Msa0506830 AT5G43470.4 26.638 458 294 13 1 439 467 901 4.12e-28 119
Msa0506830 AT5G43470.1 26.638 458 294 13 1 439 467 901 4.12e-28 119
Msa0506830 AT5G48620.6 26.580 459 293 14 1 439 467 901 4.22e-26 112
Msa0506830 AT5G48620.1 26.580 459 293 14 1 439 467 901 4.22e-26 112
Msa0506830 AT5G48620.4 26.580 459 293 14 1 439 467 901 4.22e-26 112
Msa0506830 AT5G48620.2 26.580 459 293 14 1 439 467 901 4.22e-26 112
Msa0506830 AT5G48620.3 26.580 459 293 14 1 439 467 901 4.22e-26 112
Msa0506830 AT5G48620.5 26.580 459 293 14 1 439 467 901 4.22e-26 112
Msa0506830 AT1G58400.1 26.696 457 291 13 1 439 463 893 3.04e-25 110
Msa0506830 AT1G58400.3 26.696 457 291 13 1 439 473 903 3.70e-25 110
Msa0506830 AT1G58400.2 26.696 457 291 13 1 439 473 903 3.70e-25 110
Msa0506830 AT5G35450.2 25.546 458 294 14 1 439 461 890 8.77e-24 105
Msa0506830 AT5G35450.1 25.546 458 294 14 1 439 461 890 8.77e-24 105
Msa0506830 AT1G59780.1 24.183 459 289 13 1 439 465 884 2.42e-22 101
Msa0506830 AT1G59780.2 24.183 459 289 13 1 439 460 879 2.64e-22 101
Msa0506830 AT1G53350.1 25.918 463 290 13 1 439 466 899 4.57e-22 100
Msa0506830 AT1G58390.1 25.107 466 286 14 1 439 470 899 7.82e-22 99.8
Msa0506830 AT1G58390.2 25.107 466 286 14 1 439 470 899 7.82e-22 99.8
Msa0506830 AT1G59218.1 25.298 419 270 9 1 398 473 869 7.48e-20 94.0
Msa0506830 AT1G59218.2 25.298 419 270 9 1 398 473 869 7.48e-20 94.0
Msa0506830 AT1G59218.3 25.298 419 270 9 1 398 473 869 7.48e-20 94.0
Msa0506830 AT1G58848.1 25.298 419 270 9 1 398 473 869 7.48e-20 94.0
Msa0506830 AT1G58848.2 25.298 419 270 9 1 398 473 869 7.48e-20 94.0
Msa0506830 AT1G58410.1 25.373 469 279 12 1 439 468 895 2.93e-17 85.5
Msa0506830 AT1G58410.4 25.373 469 279 12 1 439 468 895 2.93e-17 85.5
Msa0506830 AT1G58410.2 25.373 469 279 12 1 439 468 895 2.93e-17 85.5
Msa0506830 AT1G58410.3 25.373 469 279 12 1 439 436 863 4.24e-17 85.1
Msa0506830 AT1G50180.1 25.835 449 251 13 1 440 476 851 5.39e-17 84.7
Msa0506830 AT1G59620.2 22.247 454 288 9 1 439 334 737 1.05e-16 83.6
Msa0506830 AT3G46730.1 25.467 428 241 16 1 400 464 841 3.63e-14 75.9
Msa0506830 AT1G59124.2 24.638 414 271 12 1 398 473 861 9.60e-14 74.7
Msa0506830 AT1G58807.1 24.638 414 271 12 1 398 473 861 9.60e-14 74.7
Msa0506830 AT1G58602.2 24.096 415 274 8 1 398 477 867 2.15e-13 73.6
Msa0506830 AT1G58602.1 24.096 415 274 8 1 398 477 867 2.15e-13 73.6
Msa0506830 AT3G46530.1 27.461 386 227 15 1 378 464 804 2.65e-13 73.2
Msa0506830 AT1G59124.1 24.873 394 255 12 1 378 473 841 2.68e-13 73.2
Msa0506830 AT1G58807.2 24.873 394 255 12 1 378 473 841 2.68e-13 73.2
Msa0506830 AT3G14460.1 29.741 232 136 7 17 236 478 694 3.33e-12 69.7
Msa0506830 AT1G10920.5 22.764 369 251 10 1 354 179 528 2.25e-11 66.6
Msa0506830 AT1G10920.3 22.764 369 251 10 1 354 179 528 2.25e-11 66.6
Msa0506830 AT1G10920.1 22.764 369 251 10 1 354 349 698 4.14e-11 65.9
Msa0506830 AT1G10920.2 22.764 369 251 10 1 354 349 698 4.14e-11 65.9
Msa0506830 AT1G10920.4 22.764 369 251 10 1 354 349 698 4.14e-11 65.9

Find 86 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCTATTAATTTAAAATT+TGG 0.115312 3_4:-53476152 Msa0506830:three_prime_UTR
ACTTAGAAACCTTGGATTTA+AGG 0.136336 3_4:-53477469 Msa0506830:CDS
GACTAACAAAGTTGCCTAAT+TGG 0.202335 3_4:-53477040 Msa0506830:CDS
AGATTCAACCTCAATAAATT+TGG 0.221983 3_4:+53476933 None:intergenic
GTGAGCTTCTTCATCTCTTT+TGG 0.227037 3_4:+53477425 None:intergenic
TTCACTAGATATTGAAGTTT+TGG 0.227237 3_4:+53477014 None:intergenic
CTGTCTCTTCATTCCTTCTA+TGG 0.227879 3_4:-53476234 Msa0506830:CDS
TTTCCCATCAAAACCATCTT+TGG 0.230490 3_4:+53477883 None:intergenic
GCGCCTAACTGTTCCGTCTA+TGG 0.287102 3_4:+53477760 None:intergenic
ATTAATTTAAAATTTGGTTT+TGG 0.304315 3_4:-53476146 Msa0506830:three_prime_UTR
TTGAAGCAGTTAAGGAAGTT+AGG 0.323066 3_4:-53477227 Msa0506830:CDS
AAAGTTGATAAATAGAAGTT+TGG 0.327022 3_4:-53477915 Msa0506830:CDS
CACAAAGCTGAGACTTCTTC+CGG 0.331223 3_4:-53477405 Msa0506830:CDS
GTGGTGTTGTTTAGTACTAT+TGG 0.331495 3_4:-53476098 Msa0506830:three_prime_UTR
AGGCGTGTGCGGAGTGAATA+TGG 0.333451 3_4:-53477200 Msa0506830:CDS
TTCAATATCTAGTGAAGTTA+AGG 0.336555 3_4:-53477007 Msa0506830:CDS
TTAATAGAGAACACCATAGA+AGG 0.398831 3_4:+53476221 None:intergenic
TACTTTCAAAAGCTTGAACT+TGG 0.405195 3_4:+53477619 None:intergenic
GATGGTGTGCAAATGCAAAA+AGG 0.406408 3_4:-53477335 Msa0506830:CDS
TTGGTTCAAGTTTCCAAAGA+TGG 0.409986 3_4:-53477896 Msa0506830:CDS
AAAAGGTTCCCCAAGTTATC+AGG 0.416245 3_4:+53477563 None:intergenic
TGCTGATATGCCACACGAAT+TGG 0.417985 3_4:-53476691 Msa0506830:CDS
ACATTGGATAGAGTAGGAAT+AGG 0.418258 3_4:+53476555 None:intergenic
AAGTTGAGCACTTTAAGATT+AGG 0.419751 3_4:+53477071 None:intergenic
CCTGAGTCATATGAAAGTTA+AGG 0.429704 3_4:-53477522 Msa0506830:CDS
AGAACTGGATGAACATTTCA+TGG 0.437663 3_4:-53477654 Msa0506830:CDS
ATAGAGAAGGGTGCTTTACT+TGG 0.439987 3_4:-53476804 Msa0506830:CDS
CAGCAAATCCGAGGAATTGA+AGG 0.443029 3_4:+53476709 None:intergenic
TTGTTTAGTACTATTGGTTG+TGG 0.452224 3_4:-53476092 Msa0506830:three_prime_UTR
TCAAGTACGTTAAGTGGAAA+AGG 0.455756 3_4:+53477546 None:intergenic
CGCGCATCAAATCATGAACT+TGG 0.457729 3_4:+53477849 None:intergenic
AACAATGTGTTAACCAGTAC+TGG 0.459123 3_4:-53477716 Msa0506830:CDS
AGAATTTGCCAAATTTATTG+AGG 0.464419 3_4:-53476941 Msa0506830:CDS
TCCAAGTGTTTAAGGTCTTG+TGG 0.467628 3_4:+53476735 None:intergenic
CATTGGATAGAGTAGGAATA+GGG 0.471852 3_4:+53476556 None:intergenic
AATTCCTGAGTTACCAGTAC+TGG 0.473885 3_4:+53477703 None:intergenic
GAGTCATGTTCCTGATAACT+TGG 0.474040 3_4:-53477573 Msa0506830:CDS
CTACAAACAGTAGACTAGAA+TGG 0.479300 3_4:-53476056 Msa0506830:three_prime_UTR
CATGACCTTCATGCATCAAA+TGG 0.479608 3_4:+53477789 None:intergenic
AAGGTTATTCCTAGATCCAT+TGG 0.483666 3_4:-53477503 Msa0506830:CDS
AGTAGCTTACCAATGGATCT+AGG 0.493191 3_4:+53477494 None:intergenic
TCCACAAGACCTTAAACACT+TGG 0.493709 3_4:-53476736 Msa0506830:CDS
GCTACTGAACTTAGAAACCT+TGG 0.498986 3_4:-53477477 Msa0506830:CDS
AGTTAAGGAAGTTAGGCATA+AGG 0.503333 3_4:-53477220 Msa0506830:CDS
TTGGAAAACCTTCAATTCCT+CGG 0.507816 3_4:-53476717 Msa0506830:CDS
TGAGGATGAAATTCTTGACT+TGG 0.508921 3_4:-53477111 Msa0506830:CDS
CAGTAGATGAGTTCAATTCA+AGG 0.509327 3_4:+53476192 None:intergenic
AGATTGCAGTTTCAAGTTGG+AGG 0.509352 3_4:-53476885 Msa0506830:CDS
CTGGATGAACATTTCATGGA+TGG 0.512280 3_4:-53477650 Msa0506830:CDS
TAAGTTCAGTAGCTTACCAA+TGG 0.513122 3_4:+53477487 None:intergenic
GATAGATTGCAGTTTCAAGT+TGG 0.513264 3_4:-53476888 Msa0506830:CDS
ATTTATTGAGGTTGAATCTG+TGG 0.518271 3_4:-53476929 Msa0506830:CDS
AGCATTGATCCACGCAAAAG+TGG 0.520751 3_4:-53476663 Msa0506830:CDS
AGTCATGTTCCTGATAACTT+GGG 0.524414 3_4:-53477572 Msa0506830:CDS
CCTTAACTTTCATATGACTC+AGG 0.525734 3_4:+53477522 None:intergenic
TCAGGTTCAAGTACGTTAAG+TGG 0.526536 3_4:+53477540 None:intergenic
CTTAAAGTGCTCAACTTGAA+AGG 0.528176 3_4:-53477065 Msa0506830:CDS
TTGAGTTTGCCTTAAATCCA+AGG 0.529958 3_4:+53477460 None:intergenic
TGGAGGGTTTCTTAAGCTGA+AGG 0.530713 3_4:-53476868 Msa0506830:CDS
AAACCATAGACGGAACAGTT+AGG 0.531636 3_4:-53477763 Msa0506830:CDS
TAACAACAATCCTCAGTTGA+AGG 0.537046 3_4:-53476763 Msa0506830:CDS
GTTTATTATAGAAAATATGA+AGG 0.537154 3_4:-53477383 Msa0506830:CDS
GATTGCAGTTTCAAGTTGGA+GGG 0.546601 3_4:-53476884 Msa0506830:CDS
TATCTAGTGAAGTTAAGGCT+TGG 0.550388 3_4:-53477002 Msa0506830:CDS
TGTGGAACCACCTTCAACTG+AGG 0.561504 3_4:+53476753 None:intergenic
ACTCATCTACTGCATAATCA+AGG 0.567565 3_4:-53476181 Msa0506830:three_prime_UTR
GAATATGCTTGATTACTGAA+TGG 0.571918 3_4:+53476634 None:intergenic
TAATATTCAGAGATTCAAGA+TGG 0.575947 3_4:+53477144 None:intergenic
AAGTTCAATCACTATAGAGA+AGG 0.581077 3_4:-53476817 Msa0506830:CDS
TTTATTGAGGTTGAATCTGT+GGG 0.583618 3_4:-53476928 Msa0506830:CDS
TCCATGCTGAACTTTACAGA+TGG 0.584671 3_4:-53477353 Msa0506830:CDS
TTAACCAGTACTGGTAACTC+AGG 0.589717 3_4:-53477707 Msa0506830:CDS
GTACTCATTCGTCAGAAAGT+CGG 0.600791 3_4:-53476606 Msa0506830:CDS
TTCTGACGAATGAGTACTAG+AGG 0.600810 3_4:+53476612 None:intergenic
TTTCAGACATTGGATAGAGT+AGG 0.606884 3_4:+53476549 None:intergenic
TTGAGCACTTTAAGATTAGG+CGG 0.611817 3_4:+53477074 None:intergenic
GGTCATGAACAAACCATAGA+CGG 0.611974 3_4:-53477773 Msa0506830:CDS
GTCATGTTCCTGATAACTTG+GGG 0.614203 3_4:-53477571 Msa0506830:CDS
AGTTCAATCACTATAGAGAA+GGG 0.616102 3_4:-53476816 Msa0506830:CDS
ACCATCTGTAAAGTTCAGCA+TGG 0.621619 3_4:+53477352 None:intergenic
ATGCTTTCAACCAATTCGTG+TGG 0.627533 3_4:+53476681 None:intergenic
CAACAATCCTCAGTTGAAGG+TGG 0.627827 3_4:-53476760 Msa0506830:CDS
AGTTAGGCATAAGGCGTGTG+CGG 0.635936 3_4:-53477211 Msa0506830:CDS
GAATATTACTGCTATAGCTG+AGG 0.644769 3_4:-53477129 Msa0506830:CDS
AAATTCTTCGAAGAGTCTAG+TGG 0.654321 3_4:+53476957 None:intergenic
GTGGCATATCAGCAAATCCG+AGG 0.682724 3_4:+53476700 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTCTATTAATTTAAAATT+TGG - chr3_4:53477814-53477833 Msa0506830:CDS 10.0%
!!! ATTAATTTAAAATTTGGTTT+TGG - chr3_4:53477820-53477839 Msa0506830:CDS 10.0%
!!! TACTCTATTAATTTAAAATT+TGG - chr3_4:53477814-53477833 Msa0506830:CDS 10.0%
!!! ATTAATTTAAAATTTGGTTT+TGG - chr3_4:53477820-53477839 Msa0506830:CDS 10.0%
!!! TCATATTTTCTATAATAAAC+CGG + chr3_4:53476583-53476602 None:intergenic 15.0%
!! GTTTATTATAGAAAATATGA+AGG - chr3_4:53476583-53476602 Msa0506830:CDS 15.0%
!!! TCATATTTTCTATAATAAAC+CGG + chr3_4:53476583-53476602 None:intergenic 15.0%
!! GTTTATTATAGAAAATATGA+AGG - chr3_4:53476583-53476602 Msa0506830:CDS 15.0%
!!! AAAGTTGATAAATAGAAGTT+TGG - chr3_4:53476051-53476070 Msa0506830:three_prime_UTR 20.0%
!!! TTTACAAAAGCTTTACTTTT+TGG - chr3_4:53476672-53476691 Msa0506830:CDS 20.0%
!!! AAAGTTGATAAATAGAAGTT+TGG - chr3_4:53476051-53476070 Msa0506830:three_prime_UTR 20.0%
!!! TTTACAAAAGCTTTACTTTT+TGG - chr3_4:53476672-53476691 Msa0506830:CDS 20.0%
! TAATATTCAGAGATTCAAGA+TGG + chr3_4:53476825-53476844 None:intergenic 25.0%
!! TTCACTAGATATTGAAGTTT+TGG + chr3_4:53476955-53476974 None:intergenic 25.0%
! TTCAATATCTAGTGAAGTTA+AGG - chr3_4:53476959-53476978 Msa0506830:CDS 25.0%
! AGAATTTGCCAAATTTATTG+AGG - chr3_4:53477025-53477044 Msa0506830:CDS 25.0%
! AGATTCAACCTCAATAAATT+TGG + chr3_4:53477036-53477055 None:intergenic 25.0%
! GCATGAAAAAAAATGTACTT+TGG + chr3_4:53477516-53477535 None:intergenic 25.0%
!! CAAGAAAGACTAATTTTCAT+AGG + chr3_4:53477617-53477636 None:intergenic 25.0%
! TATATCATGCATAACTTTGA+TGG - chr3_4:53477647-53477666 Msa0506830:CDS 25.0%
!!! TTTTCTGTTTTTGTCATTTG+TGG - chr3_4:53477849-53477868 Msa0506830:CDS 25.0%
! TAATATTCAGAGATTCAAGA+TGG + chr3_4:53476825-53476844 None:intergenic 25.0%
!! TTCACTAGATATTGAAGTTT+TGG + chr3_4:53476955-53476974 None:intergenic 25.0%
! TTCAATATCTAGTGAAGTTA+AGG - chr3_4:53476959-53476978 Msa0506830:CDS 25.0%
! AGAATTTGCCAAATTTATTG+AGG - chr3_4:53477025-53477044 Msa0506830:CDS 25.0%
! AGATTCAACCTCAATAAATT+TGG + chr3_4:53477036-53477055 None:intergenic 25.0%
! GCATGAAAAAAAATGTACTT+TGG + chr3_4:53477516-53477535 None:intergenic 25.0%
!! CAAGAAAGACTAATTTTCAT+AGG + chr3_4:53477617-53477636 None:intergenic 25.0%
! TATATCATGCATAACTTTGA+TGG - chr3_4:53477647-53477666 Msa0506830:CDS 25.0%
!!! TTTTCTGTTTTTGTCATTTG+TGG - chr3_4:53477849-53477868 Msa0506830:CDS 25.0%
!!! TTTCCAAAGATGGTTTTGAT+GGG - chr3_4:53476080-53476099 Msa0506830:three_prime_UTR 30.0%
TACTTTCAAAAGCTTGAACT+TGG + chr3_4:53476350-53476369 None:intergenic 30.0%
ACTTAGAAACCTTGGATTTA+AGG - chr3_4:53476497-53476516 Msa0506830:intron 30.0%
TCAAAAAGTTGAAGCAGTTA+AGG - chr3_4:53476731-53476750 Msa0506830:CDS 30.0%
!! AAGTTGAGCACTTTAAGATT+AGG + chr3_4:53476898-53476917 None:intergenic 30.0%
!!! TGAAGTTTTGGAATCCAATT+AGG + chr3_4:53476943-53476962 None:intergenic 30.0%
ATTTATTGAGGTTGAATCTG+TGG - chr3_4:53477037-53477056 Msa0506830:CDS 30.0%
TTTATTGAGGTTGAATCTGT+GGG - chr3_4:53477038-53477057 Msa0506830:CDS 30.0%
AAGTTCAATCACTATAGAGA+AGG - chr3_4:53477149-53477168 Msa0506830:CDS 30.0%
AGTTCAATCACTATAGAGAA+GGG - chr3_4:53477150-53477169 Msa0506830:CDS 30.0%
GAATATGCTTGATTACTGAA+TGG + chr3_4:53477335-53477354 None:intergenic 30.0%
! ATCCAATGTCTGAAATATCA+AGG - chr3_4:53477425-53477444 Msa0506830:CDS 30.0%
TACCTTGATATTTCAGACAT+TGG + chr3_4:53477430-53477449 None:intergenic 30.0%
AAATGTACTTTGGTTAGAGA+TGG + chr3_4:53477506-53477525 None:intergenic 30.0%
GATGCAAACATTCATGTTAA+GGG + chr3_4:53477548-53477567 None:intergenic 30.0%
AGATGCAAACATTCATGTTA+AGG + chr3_4:53477549-53477568 None:intergenic 30.0%
TATCTGTTCAAATAGACACA+GGG + chr3_4:53477675-53477694 None:intergenic 30.0%
TTAATAGAGAACACCATAGA+AGG + chr3_4:53477748-53477767 None:intergenic 30.0%
! TTGTTTAGTACTATTGGTTG+TGG - chr3_4:53477874-53477893 Msa0506830:CDS 30.0%
!!! TTTCCAAAGATGGTTTTGAT+GGG - chr3_4:53476080-53476099 Msa0506830:three_prime_UTR 30.0%
TACTTTCAAAAGCTTGAACT+TGG + chr3_4:53476350-53476369 None:intergenic 30.0%
ACTTAGAAACCTTGGATTTA+AGG - chr3_4:53476497-53476516 Msa0506830:intron 30.0%
TCAAAAAGTTGAAGCAGTTA+AGG - chr3_4:53476731-53476750 Msa0506830:CDS 30.0%
!! AAGTTGAGCACTTTAAGATT+AGG + chr3_4:53476898-53476917 None:intergenic 30.0%
!!! TGAAGTTTTGGAATCCAATT+AGG + chr3_4:53476943-53476962 None:intergenic 30.0%
ATTTATTGAGGTTGAATCTG+TGG - chr3_4:53477037-53477056 Msa0506830:CDS 30.0%
TTTATTGAGGTTGAATCTGT+GGG - chr3_4:53477038-53477057 Msa0506830:CDS 30.0%
AAGTTCAATCACTATAGAGA+AGG - chr3_4:53477149-53477168 Msa0506830:CDS 30.0%
AGTTCAATCACTATAGAGAA+GGG - chr3_4:53477150-53477169 Msa0506830:CDS 30.0%
GAATATGCTTGATTACTGAA+TGG + chr3_4:53477335-53477354 None:intergenic 30.0%
! ATCCAATGTCTGAAATATCA+AGG - chr3_4:53477425-53477444 Msa0506830:CDS 30.0%
TACCTTGATATTTCAGACAT+TGG + chr3_4:53477430-53477449 None:intergenic 30.0%
AAATGTACTTTGGTTAGAGA+TGG + chr3_4:53477506-53477525 None:intergenic 30.0%
GATGCAAACATTCATGTTAA+GGG + chr3_4:53477548-53477567 None:intergenic 30.0%
AGATGCAAACATTCATGTTA+AGG + chr3_4:53477549-53477568 None:intergenic 30.0%
TATCTGTTCAAATAGACACA+GGG + chr3_4:53477675-53477694 None:intergenic 30.0%
TTAATAGAGAACACCATAGA+AGG + chr3_4:53477748-53477767 None:intergenic 30.0%
! TTGTTTAGTACTATTGGTTG+TGG - chr3_4:53477874-53477893 Msa0506830:CDS 30.0%
! TTGGTTCAAGTTTCCAAAGA+TGG - chr3_4:53476070-53476089 Msa0506830:three_prime_UTR 35.0%
!!! GTTTCCAAAGATGGTTTTGA+TGG - chr3_4:53476079-53476098 Msa0506830:three_prime_UTR 35.0%
TTTCCCATCAAAACCATCTT+TGG + chr3_4:53476086-53476105 None:intergenic 35.0%
!! TTTTGCCATTTGATGCATGA+AGG - chr3_4:53476172-53476191 Msa0506830:three_prime_UTR 35.0%
AACAATGTGTTAACCAGTAC+TGG - chr3_4:53476250-53476269 Msa0506830:CDS 35.0%
!! GCTGTATTTGTTTTCGACAA+AGG - chr3_4:53476289-53476308 Msa0506830:intron 35.0%
AGAACTGGATGAACATTTCA+TGG - chr3_4:53476312-53476331 Msa0506830:intron 35.0%
AGTCATGTTCCTGATAACTT+GGG - chr3_4:53476394-53476413 Msa0506830:intron 35.0%
TCAAGTACGTTAAGTGGAAA+AGG + chr3_4:53476423-53476442 None:intergenic 35.0%
CCTTAACTTTCATATGACTC+AGG + chr3_4:53476447-53476466 None:intergenic 35.0%
CCTGAGTCATATGAAAGTTA+AGG - chr3_4:53476444-53476463 Msa0506830:intron 35.0%
AAGGTTATTCCTAGATCCAT+TGG - chr3_4:53476463-53476482 Msa0506830:intron 35.0%
TAAGTTCAGTAGCTTACCAA+TGG + chr3_4:53476482-53476501 None:intergenic 35.0%
TTGAGTTTGCCTTAAATCCA+AGG + chr3_4:53476509-53476528 None:intergenic 35.0%
! GTGCAAATGCAAAAAGGTAT+CGG - chr3_4:53476637-53476656 Msa0506830:CDS 35.0%
!! TACTTTTTGGAAGCAGATCA+TGG - chr3_4:53476685-53476704 Msa0506830:CDS 35.0%
!! ACTTTTTGAGCTCTTCGAAA+AGG + chr3_4:53476720-53476739 None:intergenic 35.0%
TTGAAGCAGTTAAGGAAGTT+AGG - chr3_4:53476739-53476758 Msa0506830:CDS 35.0%
AGTTAAGGAAGTTAGGCATA+AGG - chr3_4:53476746-53476765 Msa0506830:CDS 35.0%
GAATATTACTGCTATAGCTG+AGG - chr3_4:53476837-53476856 Msa0506830:CDS 35.0%
TGAGGATGAAATTCTTGACT+TGG - chr3_4:53476855-53476874 Msa0506830:CDS 35.0%
!! TTGAGCACTTTAAGATTAGG+CGG + chr3_4:53476895-53476914 None:intergenic 35.0%
! CTTAAAGTGCTCAACTTGAA+AGG - chr3_4:53476901-53476920 Msa0506830:CDS 35.0%
GACTAACAAAGTTGCCTAAT+TGG - chr3_4:53476926-53476945 Msa0506830:CDS 35.0%
TATCTAGTGAAGTTAAGGCT+TGG - chr3_4:53476964-53476983 Msa0506830:CDS 35.0%
AAATTCTTCGAAGAGTCTAG+TGG + chr3_4:53477012-53477031 None:intergenic 35.0%
! GATAGATTGCAGTTTCAAGT+TGG - chr3_4:53477078-53477097 Msa0506830:CDS 35.0%
TAACAACAATCCTCAGTTGA+AGG - chr3_4:53477203-53477222 Msa0506830:CDS 35.0%
! GAAGGTTTTCCAAGTGTTTA+AGG + chr3_4:53477242-53477261 None:intergenic 35.0%
TTGGAAAACCTTCAATTCCT+CGG - chr3_4:53477249-53477268 Msa0506830:CDS 35.0%
CATTGGATAGAGTAGGAATA+GGG + chr3_4:53477413-53477432 None:intergenic 35.0%
ACATTGGATAGAGTAGGAAT+AGG + chr3_4:53477414-53477433 None:intergenic 35.0%
TTTCAGACATTGGATAGAGT+AGG + chr3_4:53477420-53477439 None:intergenic 35.0%
! AGAGAAGCATAGCATTCTAA+GGG + chr3_4:53477460-53477479 None:intergenic 35.0%
! AAGAGAAGCATAGCATTCTA+AGG + chr3_4:53477461-53477480 None:intergenic 35.0%
GTATCTGTTCAAATAGACAC+AGG + chr3_4:53477676-53477695 None:intergenic 35.0%
CAGTAGATGAGTTCAATTCA+AGG + chr3_4:53477777-53477796 None:intergenic 35.0%
ACTCATCTACTGCATAATCA+AGG - chr3_4:53477785-53477804 Msa0506830:CDS 35.0%
!! GTGGTGTTGTTTAGTACTAT+TGG - chr3_4:53477868-53477887 Msa0506830:CDS 35.0%
CTACAAACAGTAGACTAGAA+TGG - chr3_4:53477910-53477929 Msa0506830:CDS 35.0%
! TTGGTTCAAGTTTCCAAAGA+TGG - chr3_4:53476070-53476089 Msa0506830:three_prime_UTR 35.0%
!!! GTTTCCAAAGATGGTTTTGA+TGG - chr3_4:53476079-53476098 Msa0506830:three_prime_UTR 35.0%
TTTCCCATCAAAACCATCTT+TGG + chr3_4:53476086-53476105 None:intergenic 35.0%
!! TTTTGCCATTTGATGCATGA+AGG - chr3_4:53476172-53476191 Msa0506830:three_prime_UTR 35.0%
AACAATGTGTTAACCAGTAC+TGG - chr3_4:53476250-53476269 Msa0506830:CDS 35.0%
!! GCTGTATTTGTTTTCGACAA+AGG - chr3_4:53476289-53476308 Msa0506830:intron 35.0%
AGAACTGGATGAACATTTCA+TGG - chr3_4:53476312-53476331 Msa0506830:intron 35.0%
AGTCATGTTCCTGATAACTT+GGG - chr3_4:53476394-53476413 Msa0506830:intron 35.0%
TCAAGTACGTTAAGTGGAAA+AGG + chr3_4:53476423-53476442 None:intergenic 35.0%
CCTTAACTTTCATATGACTC+AGG + chr3_4:53476447-53476466 None:intergenic 35.0%
CCTGAGTCATATGAAAGTTA+AGG - chr3_4:53476444-53476463 Msa0506830:intron 35.0%
AAGGTTATTCCTAGATCCAT+TGG - chr3_4:53476463-53476482 Msa0506830:intron 35.0%
TAAGTTCAGTAGCTTACCAA+TGG + chr3_4:53476482-53476501 None:intergenic 35.0%
TTGAGTTTGCCTTAAATCCA+AGG + chr3_4:53476509-53476528 None:intergenic 35.0%
! GTGCAAATGCAAAAAGGTAT+CGG - chr3_4:53476637-53476656 Msa0506830:CDS 35.0%
!! TACTTTTTGGAAGCAGATCA+TGG - chr3_4:53476685-53476704 Msa0506830:CDS 35.0%
!! ACTTTTTGAGCTCTTCGAAA+AGG + chr3_4:53476720-53476739 None:intergenic 35.0%
TTGAAGCAGTTAAGGAAGTT+AGG - chr3_4:53476739-53476758 Msa0506830:CDS 35.0%
AGTTAAGGAAGTTAGGCATA+AGG - chr3_4:53476746-53476765 Msa0506830:CDS 35.0%
GAATATTACTGCTATAGCTG+AGG - chr3_4:53476837-53476856 Msa0506830:CDS 35.0%
TGAGGATGAAATTCTTGACT+TGG - chr3_4:53476855-53476874 Msa0506830:CDS 35.0%
!! TTGAGCACTTTAAGATTAGG+CGG + chr3_4:53476895-53476914 None:intergenic 35.0%
! CTTAAAGTGCTCAACTTGAA+AGG - chr3_4:53476901-53476920 Msa0506830:CDS 35.0%
GACTAACAAAGTTGCCTAAT+TGG - chr3_4:53476926-53476945 Msa0506830:CDS 35.0%
TATCTAGTGAAGTTAAGGCT+TGG - chr3_4:53476964-53476983 Msa0506830:CDS 35.0%
AAATTCTTCGAAGAGTCTAG+TGG + chr3_4:53477012-53477031 None:intergenic 35.0%
! GATAGATTGCAGTTTCAAGT+TGG - chr3_4:53477078-53477097 Msa0506830:CDS 35.0%
TAACAACAATCCTCAGTTGA+AGG - chr3_4:53477203-53477222 Msa0506830:CDS 35.0%
! GAAGGTTTTCCAAGTGTTTA+AGG + chr3_4:53477242-53477261 None:intergenic 35.0%
TTGGAAAACCTTCAATTCCT+CGG - chr3_4:53477249-53477268 Msa0506830:CDS 35.0%
CATTGGATAGAGTAGGAATA+GGG + chr3_4:53477413-53477432 None:intergenic 35.0%
ACATTGGATAGAGTAGGAAT+AGG + chr3_4:53477414-53477433 None:intergenic 35.0%
TTTCAGACATTGGATAGAGT+AGG + chr3_4:53477420-53477439 None:intergenic 35.0%
! AGAGAAGCATAGCATTCTAA+GGG + chr3_4:53477460-53477479 None:intergenic 35.0%
! AAGAGAAGCATAGCATTCTA+AGG + chr3_4:53477461-53477480 None:intergenic 35.0%
GTATCTGTTCAAATAGACAC+AGG + chr3_4:53477676-53477695 None:intergenic 35.0%
CAGTAGATGAGTTCAATTCA+AGG + chr3_4:53477777-53477796 None:intergenic 35.0%
ACTCATCTACTGCATAATCA+AGG - chr3_4:53477785-53477804 Msa0506830:CDS 35.0%
!! GTGGTGTTGTTTAGTACTAT+TGG - chr3_4:53477868-53477887 Msa0506830:CDS 35.0%
CTACAAACAGTAGACTAGAA+TGG - chr3_4:53477910-53477929 Msa0506830:CDS 35.0%
CATGACCTTCATGCATCAAA+TGG + chr3_4:53476180-53476199 None:intergenic 40.0%
GGTCATGAACAAACCATAGA+CGG - chr3_4:53476193-53476212 Msa0506830:exon 40.0%
AAACCATAGACGGAACAGTT+AGG - chr3_4:53476203-53476222 Msa0506830:exon 40.0%
!! TTAACCAGTACTGGTAACTC+AGG - chr3_4:53476259-53476278 Msa0506830:CDS 40.0%
AATTCCTGAGTTACCAGTAC+TGG + chr3_4:53476266-53476285 None:intergenic 40.0%
! TGTTTTCGACAAAGGAGAAC+TGG - chr3_4:53476297-53476316 Msa0506830:intron 40.0%
CTGGATGAACATTTCATGGA+TGG - chr3_4:53476316-53476335 Msa0506830:intron 40.0%
GAGTCATGTTCCTGATAACT+TGG - chr3_4:53476393-53476412 Msa0506830:intron 40.0%
GTCATGTTCCTGATAACTTG+GGG - chr3_4:53476395-53476414 Msa0506830:intron 40.0%
AAAAGGTTCCCCAAGTTATC+AGG + chr3_4:53476406-53476425 None:intergenic 40.0%
TCAGGTTCAAGTACGTTAAG+TGG + chr3_4:53476429-53476448 None:intergenic 40.0%
AGTAGCTTACCAATGGATCT+AGG + chr3_4:53476475-53476494 None:intergenic 40.0%
GCTACTGAACTTAGAAACCT+TGG - chr3_4:53476489-53476508 Msa0506830:intron 40.0%
! GTGAGCTTCTTCATCTCTTT+TGG + chr3_4:53476544-53476563 None:intergenic 40.0%
TCCATGCTGAACTTTACAGA+TGG - chr3_4:53476613-53476632 Msa0506830:CDS 40.0%
ACCATCTGTAAAGTTCAGCA+TGG + chr3_4:53476617-53476636 None:intergenic 40.0%
GATGGTGTGCAAATGCAAAA+AGG - chr3_4:53476631-53476650 Msa0506830:CDS 40.0%
!! TTTTTGGAAGCAGATCATGG+TGG - chr3_4:53476688-53476707 Msa0506830:CDS 40.0%
!! AGATTGCAGTTTCAAGTTGG+AGG - chr3_4:53477081-53477100 Msa0506830:CDS 40.0%
!! GATTGCAGTTTCAAGTTGGA+GGG - chr3_4:53477082-53477101 Msa0506830:CDS 40.0%
!! ATAGAGAAGGGTGCTTTACT+TGG - chr3_4:53477162-53477181 Msa0506830:CDS 40.0%
TCCACAAGACCTTAAACACT+TGG - chr3_4:53477230-53477249 Msa0506830:CDS 40.0%
! TCCAAGTGTTTAAGGTCTTG+TGG + chr3_4:53477234-53477253 None:intergenic 40.0%
ATGCTTTCAACCAATTCGTG+TGG + chr3_4:53477288-53477307 None:intergenic 40.0%
TTCTGACGAATGAGTACTAG+AGG + chr3_4:53477357-53477376 None:intergenic 40.0%
GTACTCATTCGTCAGAAAGT+CGG - chr3_4:53477360-53477379 Msa0506830:CDS 40.0%
! GAGAAGCATAGCATTCTAAG+GGG + chr3_4:53477459-53477478 None:intergenic 40.0%
! TCTTCTTTTGAGCTGCAACA+TGG + chr3_4:53477706-53477725 None:intergenic 40.0%
CTGTCTCTTCATTCCTTCTA+TGG - chr3_4:53477732-53477751 Msa0506830:CDS 40.0%
CATGACCTTCATGCATCAAA+TGG + chr3_4:53476180-53476199 None:intergenic 40.0%
GGTCATGAACAAACCATAGA+CGG - chr3_4:53476193-53476212 Msa0506830:exon 40.0%
AAACCATAGACGGAACAGTT+AGG - chr3_4:53476203-53476222 Msa0506830:exon 40.0%
!! TTAACCAGTACTGGTAACTC+AGG - chr3_4:53476259-53476278 Msa0506830:CDS 40.0%
AATTCCTGAGTTACCAGTAC+TGG + chr3_4:53476266-53476285 None:intergenic 40.0%
! TGTTTTCGACAAAGGAGAAC+TGG - chr3_4:53476297-53476316 Msa0506830:intron 40.0%
CTGGATGAACATTTCATGGA+TGG - chr3_4:53476316-53476335 Msa0506830:intron 40.0%
GAGTCATGTTCCTGATAACT+TGG - chr3_4:53476393-53476412 Msa0506830:intron 40.0%
GTCATGTTCCTGATAACTTG+GGG - chr3_4:53476395-53476414 Msa0506830:intron 40.0%
AAAAGGTTCCCCAAGTTATC+AGG + chr3_4:53476406-53476425 None:intergenic 40.0%
TCAGGTTCAAGTACGTTAAG+TGG + chr3_4:53476429-53476448 None:intergenic 40.0%
AGTAGCTTACCAATGGATCT+AGG + chr3_4:53476475-53476494 None:intergenic 40.0%
GCTACTGAACTTAGAAACCT+TGG - chr3_4:53476489-53476508 Msa0506830:intron 40.0%
! GTGAGCTTCTTCATCTCTTT+TGG + chr3_4:53476544-53476563 None:intergenic 40.0%
TCCATGCTGAACTTTACAGA+TGG - chr3_4:53476613-53476632 Msa0506830:CDS 40.0%
ACCATCTGTAAAGTTCAGCA+TGG + chr3_4:53476617-53476636 None:intergenic 40.0%
GATGGTGTGCAAATGCAAAA+AGG - chr3_4:53476631-53476650 Msa0506830:CDS 40.0%
!! TTTTTGGAAGCAGATCATGG+TGG - chr3_4:53476688-53476707 Msa0506830:CDS 40.0%
!! AGATTGCAGTTTCAAGTTGG+AGG - chr3_4:53477081-53477100 Msa0506830:CDS 40.0%
!! GATTGCAGTTTCAAGTTGGA+GGG - chr3_4:53477082-53477101 Msa0506830:CDS 40.0%
!! ATAGAGAAGGGTGCTTTACT+TGG - chr3_4:53477162-53477181 Msa0506830:CDS 40.0%
TCCACAAGACCTTAAACACT+TGG - chr3_4:53477230-53477249 Msa0506830:CDS 40.0%
! TCCAAGTGTTTAAGGTCTTG+TGG + chr3_4:53477234-53477253 None:intergenic 40.0%
ATGCTTTCAACCAATTCGTG+TGG + chr3_4:53477288-53477307 None:intergenic 40.0%
TTCTGACGAATGAGTACTAG+AGG + chr3_4:53477357-53477376 None:intergenic 40.0%
GTACTCATTCGTCAGAAAGT+CGG - chr3_4:53477360-53477379 Msa0506830:CDS 40.0%
! GAGAAGCATAGCATTCTAAG+GGG + chr3_4:53477459-53477478 None:intergenic 40.0%
! TCTTCTTTTGAGCTGCAACA+TGG + chr3_4:53477706-53477725 None:intergenic 40.0%
CTGTCTCTTCATTCCTTCTA+TGG - chr3_4:53477732-53477751 Msa0506830:CDS 40.0%
CGCGCATCAAATCATGAACT+TGG + chr3_4:53476120-53476139 None:intergenic 45.0%
CACAAAGCTGAGACTTCTTC+CGG - chr3_4:53476561-53476580 Msa0506830:CDS 45.0%
! CTGTGGGATGATGCATTTTC+TGG - chr3_4:53477054-53477073 Msa0506830:CDS 45.0%
TGGAGGGTTTCTTAAGCTGA+AGG - chr3_4:53477098-53477117 Msa0506830:CDS 45.0%
CAACAATCCTCAGTTGAAGG+TGG - chr3_4:53477206-53477225 Msa0506830:CDS 45.0%
CAGCAAATCCGAGGAATTGA+AGG + chr3_4:53477260-53477279 None:intergenic 45.0%
TGCTGATATGCCACACGAAT+TGG - chr3_4:53477275-53477294 Msa0506830:CDS 45.0%
!! AGCATTGATCCACGCAAAAG+TGG - chr3_4:53477303-53477322 Msa0506830:CDS 45.0%
!! TGGAATTCTCCACTTTTGCG+TGG + chr3_4:53477315-53477334 None:intergenic 45.0%
CGCGCATCAAATCATGAACT+TGG + chr3_4:53476120-53476139 None:intergenic 45.0%
CACAAAGCTGAGACTTCTTC+CGG - chr3_4:53476561-53476580 Msa0506830:CDS 45.0%
! CTGTGGGATGATGCATTTTC+TGG - chr3_4:53477054-53477073 Msa0506830:CDS 45.0%
TGGAGGGTTTCTTAAGCTGA+AGG - chr3_4:53477098-53477117 Msa0506830:CDS 45.0%
CAACAATCCTCAGTTGAAGG+TGG - chr3_4:53477206-53477225 Msa0506830:CDS 45.0%
CAGCAAATCCGAGGAATTGA+AGG + chr3_4:53477260-53477279 None:intergenic 45.0%
TGCTGATATGCCACACGAAT+TGG - chr3_4:53477275-53477294 Msa0506830:CDS 45.0%
!! AGCATTGATCCACGCAAAAG+TGG - chr3_4:53477303-53477322 Msa0506830:CDS 45.0%
!! TGGAATTCTCCACTTTTGCG+TGG + chr3_4:53477315-53477334 None:intergenic 45.0%
AGTTAGGCATAAGGCGTGTG+CGG - chr3_4:53476755-53476774 Msa0506830:CDS 50.0%
TGTGGAACCACCTTCAACTG+AGG + chr3_4:53477216-53477235 None:intergenic 50.0%
GTGGCATATCAGCAAATCCG+AGG + chr3_4:53477269-53477288 None:intergenic 50.0%
AGTTAGGCATAAGGCGTGTG+CGG - chr3_4:53476755-53476774 Msa0506830:CDS 50.0%
TGTGGAACCACCTTCAACTG+AGG + chr3_4:53477216-53477235 None:intergenic 50.0%
GTGGCATATCAGCAAATCCG+AGG + chr3_4:53477269-53477288 None:intergenic 50.0%
GCGCCTAACTGTTCCGTCTA+TGG + chr3_4:53476209-53476228 None:intergenic 55.0%
AGGCGTGTGCGGAGTGAATA+TGG - chr3_4:53476766-53476785 Msa0506830:CDS 55.0%
GCGCCTAACTGTTCCGTCTA+TGG + chr3_4:53476209-53476228 None:intergenic 55.0%
AGGCGTGTGCGGAGTGAATA+TGG - chr3_4:53476766-53476785 Msa0506830:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 53476046 53477942 53476046 ID=Msa0506830;Name=Msa0506830
chr3_4 mRNA 53476046 53477942 53476046 ID=Msa0506830-mRNA-1;Parent=Msa0506830;Name=Msa0506830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0.5|1|0|0|2|158|492
chr3_4 exon 53476046 53476296 53476046 ID=Msa0506830-mRNA-1:exon:11883;Parent=Msa0506830-mRNA-1
chr3_4 exon 53476557 53477942 53476557 ID=Msa0506830-mRNA-1:exon:11882;Parent=Msa0506830-mRNA-1
chr3_4 CDS 53476557 53477942 53476557 ID=Msa0506830-mRNA-1:cds;Parent=Msa0506830-mRNA-1
chr3_4 CDS 53476204 53476296 53476204 ID=Msa0506830-mRNA-1:cds;Parent=Msa0506830-mRNA-1
chr3_4 three_prime_UTR 53476046 53476203 53476046 ID=Msa0506830-mRNA-1:three_prime_utr;Parent=Msa0506830-mRNA-1
Gene Sequence

>Msa0506830

ATGACAAAGTTGATAAATAGAAGTTTGGTTCAAGTTTCCAAAGATGGTTTTGATGGGAAAGTGAAAAGTTGCCAAGTTCATGATTTGATGCGCGAAGTGATCATCAAAAAAGTGAAAGATTCAAGCTTTTGCCATTTGATGCATGAAGGTCATGAACAAACCATAGACGGAACAGTTAGGCGCTTCTCTATAGCAGCTAACGCAAACAATGTGTTAACCAGTACTGGTAACTCAGGAATTCGAGCTGTATTTGTTTTCGACAAAGGAGAACTGGATGAACATTTCATGGATGGATTAATTTCCAAGTTCAAGCTTTTGAAAGTACTTGATTTTGAGAAATCTCAGTTGAGTCATGTTCCTGATAACTTGGGGAACCTTTTCCACTTAACGTACTTGAACCTGAGTCATATGAAAGTTAAGGTTATTCCTAGATCCATTGGTAAGCTACTGAACTTAGAAACCTTGGATTTAAGGCAAACTCAAGTGCGTGAGTTACCAAAAGAGATGAAGAAGCTCACAAAGCTGAGACTTCTTCCGGTTTATTATAGAAAATATGAAGGACATTATTCCATGCTGAACTTTACAGATGGTGTGCAAATGCAAAAAGGTATCGGATGTTTGATATCTTTACAAAAGCTTTACTTTTTGGAAGCAGATCATGGTGGAATAGACCTTTTCGAAGAGCTCAAAAAGTTGAAGCAGTTAAGGAAGTTAGGCATAAGGCGTGTGCGGAGTGAATATGGTAATGCATTATGTGATACAATACAACAGATGAACCATCTTGAATCTCTGAATATTACTGCTATAGCTGAGGATGAAATTCTTGACTTGGATTTTATATCAACTCCGCCTAATCTTAAAGTGCTCAACTTGAAAGGTAGACTAACAAAGTTGCCTAATTGGATTCCAAAACTTCAATATCTAGTGAAGTTAAGGCTTGGCTTATCTAACTTCGAACATGATCCACTAGACTCTTCGAAGAATTTGCCAAATTTATTGAGGTTGAATCTGTGGGATGATGCATTTTCTGGTGATAGATTGCAGTTTCAAGTTGGAGGGTTTCTTAAGCTGAAGGAACTTGATCTTACTAGATTGAATAAACTAAGTTCAATCACTATAGAGAAGGGTGCTTTACTTGGTCTTGATCATTTCAGATTTAACAACAATCCTCAGTTGAAGGTGGTTCCACAAGACCTTAAACACTTGGAAAACCTTCAATTCCTCGGATTTGCTGATATGCCACACGAATTGGTTGAAAGCATTGATCCACGCAAAAGTGGAGAATTCCATTCAGTAATCAAGCATATTCCTCTAGTACTCATTCGTCAGAAAGTCGGATCAAGATTTCATGACTATGAGTTGTACCCTATTCCTACTCTATCCAATATACAAATTCTCCATGTTGCAGCTCAAAAGAAGATGCTCTCTGTCTCTTCATTCCTTCTATGGTGTTCTCTATTAATTGTTTCCTTGAATTGA

Protein sequence

>Msa0506830

MTKLINRSLVQVSKDGFDGKVKSCQVHDLMREVIIKKVKDSSFCHLMHEGHEQTIDGTVRRFSIAANANNVLTSTGNSGIRAVFVFDKGELDEHFMDGLISKFKLLKVLDFEKSQLSHVPDNLGNLFHLTYLNLSHMKVKVIPRSIGKLLNLETLDLRQTQVRELPKEMKKLTKLRLLPVYYRKYEGHYSMLNFTDGVQMQKGIGCLISLQKLYFLEADHGGIDLFEELKKLKQLRKLGIRRVRSEYGNALCDTIQQMNHLESLNITAIAEDEILDLDFISTPPNLKVLNLKGRLTKLPNWIPKLQYLVKLRLGLSNFEHDPLDSSKNLPNLLRLNLWDDAFSGDRLQFQVGGFLKLKELDLTRLNKLSSITIEKGALLGLDHFRFNNNPQLKVVPQDLKHLENLQFLGFADMPHELVESIDPRKSGEFHSVIKHIPLVLIRQKVGSRFHDYELYPIPTLSNIQILHVAAQKKMLSVSSFLLWCSLLIVSLN*