AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0811040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811040 MtrunA17_Chr5g0427491 98.830 171 1 1 1 170 1 171 2.67e-122 341
Msa0811040 MtrunA17_Chr3g0132871 58.427 178 61 7 1 170 1 173 1.55e-54 170
Msa0811040 MtrunA17_Chr5g0412221 50.000 176 75 8 1 169 1 170 3.39e-42 139
Msa0811040 MtrunA17_Chr8g0367531 50.400 125 52 4 54 169 48 171 4.96e-25 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0811040 AT4G38060.3 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0811040 AT4G38060.2 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0811040 AT4G38060.4 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0811040 AT5G65480.1 39.759 83 42 3 85 167 76 150 2.28e-11 59.3

Find 57 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATGGTGGATGTGTTTC+TGG 0.033913 5_3:+40176539 Msa0811040:CDS
TCACAACAATGTGGTGAAAT+TGG 0.174455 5_3:+40178311 Msa0811040:three_prime_UTR
AAAACTTCTTGAGTTCTAAT+TGG 0.205517 5_3:+40174844 Msa0811040:five_prime_UTR
CCTTGTTATGGAAGAGATTA+TGG 0.254169 5_3:+40176665 Msa0811040:CDS
AATATGATTGGTAAACTTCT+TGG 0.258151 5_3:+40178178 Msa0811040:three_prime_UTR
CCAATCTCTCATGGTGGTTA+TGG 0.284622 5_3:+40176312 Msa0811040:CDS
CAAGAAAGGTGAAGAGAAAA+TGG 0.289877 5_3:+40176459 Msa0811040:CDS
AGAGAAACATGTTTGAAGTT+TGG 0.311863 5_3:+40178339 Msa0811040:three_prime_UTR
TGAAGAGAAAATGGAATAGT+AGG 0.316249 5_3:+40176468 Msa0811040:CDS
AAGAGAGGAGGAAAGTAGAT+AGG 0.329784 5_3:+40176492 Msa0811040:CDS
GACAAAATCCTCTGATCTTA+AGG 0.338690 5_3:+40178081 Msa0811040:three_prime_UTR
ATATATGTCTATATGCGTTT+TGG 0.344168 5_3:+40178485 Msa0811040:three_prime_UTR
GCAAGAAATATGTGGAAAAC+TGG 0.361128 5_3:+40177999 Msa0811040:CDS
TGACAATGTCTTCTCCTCAT+AGG 0.363084 5_3:-40178214 None:intergenic
GATGATTCTGATTGGTCAAT+TGG 0.374079 5_3:+40176572 Msa0811040:CDS
TGAGGTAATGAGATTTCCTT+TGG 0.393984 5_3:+40176412 Msa0811040:CDS
CACAACAATGTGGTGAAATT+GGG 0.398333 5_3:+40178312 Msa0811040:three_prime_UTR
GTTGTTCTTGTTCCTTCTGA+TGG 0.413282 5_3:+40176524 Msa0811040:CDS
AGAGAGGAGGAAAGTAGATA+GGG 0.446591 5_3:+40176493 Msa0811040:CDS
CAAGAACCAAGAATCTCAAA+AGG 0.446650 5_3:+40176347 Msa0811040:CDS
GAAGAGAAAATGGAATAGTA+GGG 0.469666 5_3:+40176469 Msa0811040:CDS
CCATAACCACCATGAGAGAT+TGG 0.475688 5_3:-40176312 None:intergenic
CCTATGTTTGCTTGCACCAA+AGG 0.477638 5_3:-40176428 None:intergenic
TTCAACAGATTTGAACATGT+TGG 0.479485 5_3:+40176385 Msa0811040:CDS
CGGAATCCGATGATTCTGAT+TGG 0.482757 5_3:+40176564 Msa0811040:CDS
TGATTGGTCAATTGGATGGT+TGG 0.487254 5_3:+40176580 Msa0811040:CDS
TGGTGGATGTGTTTCTGGTT+CGG 0.487310 5_3:+40176544 Msa0811040:CDS
CCTTTGGTGCAAGCAAACAT+AGG 0.502632 5_3:+40176428 Msa0811040:CDS
CATAGGATCATCATCAAGAA+AGG 0.508029 5_3:+40176445 Msa0811040:CDS
AATGGAATAGTAGGGAAGAG+AGG 0.508759 5_3:+40176477 Msa0811040:CDS
GTTCTTGTTCCTTCTGATGG+TGG 0.509264 5_3:+40176527 Msa0811040:CDS
ACTAAAAGCAACTTACTCAA+TGG 0.526904 5_3:+40176704 Msa0811040:CDS
TTATCAGTTTCATCATCACT+TGG 0.530693 5_3:-40176623 None:intergenic
AGCAACTTACTCAATGGTGT+TGG 0.531403 5_3:+40176710 Msa0811040:CDS
GATAATAATTGAAACCTATG+AGG 0.531958 5_3:+40178200 Msa0811040:three_prime_UTR
ATTGGATGGTTGGAACCTCA+TGG 0.532027 5_3:+40176590 Msa0811040:CDS
AAATGATGAAGATTAGTGTC+AGG 0.535846 5_3:-40178041 None:intergenic
TGTCAAGAATAAAGCAATTG+TGG 0.541510 5_3:+40178232 Msa0811040:three_prime_UTR
TTTGAACATGTTGGAATCTG+AGG 0.545709 5_3:+40176394 Msa0811040:CDS
ATTCTGATTGGTCAATTGGA+TGG 0.551491 5_3:+40176576 Msa0811040:CDS
AATTGACCAATCAGAATCAT+CGG 0.564384 5_3:-40176570 None:intergenic
CTCTCATGGTGGTTATGGAG+TGG 0.566656 5_3:+40176317 Msa0811040:CDS
CCATAATCTCTTCCATAACA+AGG 0.570281 5_3:-40176665 None:intergenic
GATGTGATGTCAAATATGAT+TGG 0.573394 5_3:+40178166 Msa0811040:three_prime_UTR
TGGCATTCACCAATCTCTCA+TGG 0.573580 5_3:+40176303 Msa0811040:CDS
TGGTTGGAACCTCATGGACC+TGG 0.574553 5_3:+40176596 Msa0811040:CDS
ATTTGTTGCCTTAAGATCAG+AGG 0.574843 5_3:-40178089 None:intergenic
AAGAACCAAGAATCTCAAAA+GGG 0.581798 5_3:+40176348 Msa0811040:CDS
TGCAGAAAGCAAGAAATATG+TGG 0.588632 5_3:+40177991 Msa0811040:intron
TCATCATCACTTGGAAAACC+AGG 0.594451 5_3:-40176614 None:intergenic
GGAATAGTAGGGAAGAGAGG+AGG 0.604239 5_3:+40176480 Msa0811040:CDS
GAAACACATCCACCATCAGA+AGG 0.625569 5_3:-40176536 None:intergenic
AATTCGACGTAAATAAATGT+CGG 0.636507 5_3:+40176280 Msa0811040:exon
CTTGGAAAACCAGGTCCATG+AGG 0.659242 5_3:-40176605 None:intergenic
TCGACGTAAATAAATGTCGG+TGG 0.661450 5_3:+40176283 Msa0811040:exon
CATTCACCAATCTCTCATGG+TGG 0.721722 5_3:+40176306 Msa0811040:CDS
CTTTGAGAATCACAACAATG+TGG 0.751456 5_3:+40178302 Msa0811040:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAGTATTGCTTTTT+AGG - chr5_3:40175640-40175659 None:intergenic 15.0%
!!! AAAGCAATACTTTTTTTTAT+TGG + chr5_3:40175642-40175661 Msa0811040:intron 15.0%
!!! TAAGTGTTGATTTATAAAAT+AGG - chr5_3:40177578-40177597 None:intergenic 15.0%
!!! ATATTTTTAGAAACTTTCTC+AGG + chr5_3:40174870-40174889 Msa0811040:five_prime_UTR 20.0%
!!! AGGTTATTTTGTACTTTTTA+AGG + chr5_3:40174890-40174909 Msa0811040:five_prime_UTR 20.0%
!! ATTCATAAACTTCTATTTCA+AGG - chr5_3:40174972-40174991 None:intergenic 20.0%
!!! TATTTTATCATTTTAGCTTC+TGG + chr5_3:40175029-40175048 Msa0811040:intron 20.0%
!!! ATTTTATCATTTTAGCTTCT+GGG + chr5_3:40175030-40175049 Msa0811040:intron 20.0%
!! AGATAATATAAAACGAGTTT+AGG + chr5_3:40175296-40175315 Msa0811040:intron 20.0%
!! AGATTATTAAGAGATCAATT+TGG + chr5_3:40175437-40175456 Msa0811040:intron 20.0%
!!! GTTTTTGTTTTCCTATTTTA+AGG + chr5_3:40175799-40175818 Msa0811040:intron 20.0%
!! CATAATCAAAGGAAAAAAAA+AGG - chr5_3:40175829-40175848 None:intergenic 20.0%
!! CAATACAAAAACATAATCAA+AGG - chr5_3:40175840-40175859 None:intergenic 20.0%
!!! TTTTTAGATAGTTATTCTGA+TGG + chr5_3:40176737-40176756 Msa0811040:CDS 20.0%
!! TATAATATGAATGCTTGAAT+TGG + chr5_3:40176849-40176868 Msa0811040:intron 20.0%
!! GATAGAACTTTATAATTACA+AGG - chr5_3:40176894-40176913 None:intergenic 20.0%
!!! ATTTTGTAATATTGACAATG+TGG - chr5_3:40176928-40176947 None:intergenic 20.0%
!! TCCATAAAATTGCAAAATAT+TGG + chr5_3:40176950-40176969 Msa0811040:intron 20.0%
!!! ACCAATATTTTGCAATTTTA+TGG - chr5_3:40176954-40176973 None:intergenic 20.0%
!!! TTTAGAATATCAATAATGTG+AGG + chr5_3:40177100-40177119 Msa0811040:intron 20.0%
!! TTAGAATATCAATAATGTGA+GGG + chr5_3:40177101-40177120 Msa0811040:intron 20.0%
!!! ATTTCTCATTTGTTTTTCTA+TGG + chr5_3:40177415-40177434 Msa0811040:intron 20.0%
!!! TTTCTCATTTGTTTTTCTAT+GGG + chr5_3:40177416-40177435 Msa0811040:intron 20.0%
!!! TGTCATTTAAACATGATTAA+GGG - chr5_3:40177633-40177652 None:intergenic 20.0%
!!! TTCAGATTTTATTTTTCTTC+TGG + chr5_3:40177929-40177948 Msa0811040:intron 20.0%
!!! AAAAAAAAAAAAAAGAGCAC+TGG + chr5_3:40178138-40178157 Msa0811040:three_prime_UTR 20.0%
!! AAAACTTCTTGAGTTCTAAT+TGG + chr5_3:40174844-40174863 Msa0811040:five_prime_UTR 25.0%
!! TTGAGTTAAATTGTTAGCTT+AGG + chr5_3:40175153-40175172 Msa0811040:intron 25.0%
!!! ATACGTTTTGATTTTATCAC+TGG - chr5_3:40175259-40175278 None:intergenic 25.0%
! AACTCTTCGTATTGTATATT+TGG + chr5_3:40175398-40175417 Msa0811040:intron 25.0%
!! ATTATCTAGAGTAGATAATG+TGG + chr5_3:40175465-40175484 Msa0811040:intron 25.0%
! AAAAACTATGAACTTCCTAA+TGG + chr5_3:40175511-40175530 Msa0811040:intron 25.0%
!! ATTATGATAACTTGTCCATT+AGG - chr5_3:40175529-40175548 None:intergenic 25.0%
! AATGGACAAGTTATCATAAT+TGG + chr5_3:40175529-40175548 Msa0811040:intron 25.0%
! ATGGACAAGTTATCATAATT+GGG + chr5_3:40175530-40175549 Msa0811040:intron 25.0%
! ACTGGGTATAAAAAAAATTG+AGG + chr5_3:40175678-40175697 Msa0811040:intron 25.0%
! AAAAAGGACAACCTTAAAAT+AGG - chr5_3:40175813-40175832 None:intergenic 25.0%
!!! GTTTTTAATTCTCTGAATTG+TGG + chr5_3:40175877-40175896 Msa0811040:intron 25.0%
!! TGTACTTAGAACTAATGTTT+TGG + chr5_3:40175929-40175948 Msa0811040:intron 25.0%
!! GTACTTAGAACTAATGTTTT+GGG + chr5_3:40175930-40175949 Msa0811040:intron 25.0%
!! ATGTATATTGCACAATTTTC+AGG + chr5_3:40175979-40175998 Msa0811040:intron 25.0%
!!! GATTAAAATCAGAAAGTGTT+TGG - chr5_3:40176104-40176123 None:intergenic 25.0%
! AATGTTGTAGAGATAAAATC+AGG - chr5_3:40176183-40176202 None:intergenic 25.0%
! AAGAACAAAAGTTAGTAACA+AGG - chr5_3:40176238-40176257 None:intergenic 25.0%
! AATTCGACGTAAATAAATGT+CGG + chr5_3:40176280-40176299 Msa0811040:exon 25.0%
!!! TGATAATAGTTTTGCAGTTT+TGG + chr5_3:40176640-40176659 Msa0811040:CDS 25.0%
!! GATTAACTTTTTGTAATGTG+AGG + chr5_3:40177071-40177090 Msa0811040:intron 25.0%
! GTCATTTAAACATGATTAAG+GGG - chr5_3:40177632-40177651 None:intergenic 25.0%
!!! GTGTCATTTAAACATGATTA+AGG - chr5_3:40177634-40177653 None:intergenic 25.0%
!! AGCAATGCTATTAATTTTAG+GGG - chr5_3:40177773-40177792 None:intergenic 25.0%
!! CAGCAATGCTATTAATTTTA+GGG - chr5_3:40177774-40177793 None:intergenic 25.0%
! TTGTGCATATGTTAATTATG+TGG + chr5_3:40177903-40177922 Msa0811040:intron 25.0%
! TTCTGCAACAACAAAAAAAA+AGG - chr5_3:40177978-40177997 None:intergenic 25.0%
! AATATGATTGGTAAACTTCT+TGG + chr5_3:40178178-40178197 Msa0811040:three_prime_UTR 25.0%
! GATAATAATTGAAACCTATG+AGG + chr5_3:40178200-40178219 Msa0811040:three_prime_UTR 25.0%
!! ATATATGTCTATATGCGTTT+TGG + chr5_3:40178485-40178504 Msa0811040:three_prime_UTR 25.0%
TTGCTTCAGTAAATACATGT+AGG - chr5_3:40175367-40175386 None:intergenic 30.0%
! TTCGTATTGTATATTTGGTG+AGG + chr5_3:40175403-40175422 Msa0811040:intron 30.0%
TGGACAAGTTATCATAATTG+GGG + chr5_3:40175531-40175550 Msa0811040:intron 30.0%
ATTGGAGATACTATTACTAC+TGG + chr5_3:40175660-40175679 Msa0811040:intron 30.0%
TTGGAGATACTATTACTACT+GGG + chr5_3:40175661-40175680 Msa0811040:intron 30.0%
!!! TGTTTGTGTTGGCTATTTTA+AGG + chr5_3:40175772-40175791 Msa0811040:intron 30.0%
TATTGATCATGTGACCAATT+GGG + chr5_3:40175855-40175874 Msa0811040:intron 30.0%
CAGAGAATTAAAAACCCAAT+TGG - chr5_3:40175872-40175891 None:intergenic 30.0%
!!! TAGAACTAATGTTTTGGGTT+TGG + chr5_3:40175935-40175954 Msa0811040:intron 30.0%
!!! TAATGTTTTGGGTTTGGTTT+TGG + chr5_3:40175941-40175960 Msa0811040:intron 30.0%
!!! AATGTTTTGGGTTTGGTTTT+GGG + chr5_3:40175942-40175961 Msa0811040:intron 30.0%
! AAAACAACTCCTTTTTGTTG+AGG + chr5_3:40176132-40176151 Msa0811040:intron 30.0%
! TAACTTTTGTTCTTCTCAAC+AGG + chr5_3:40176244-40176263 Msa0811040:intron 30.0%
AAGAACCAAGAATCTCAAAA+GGG + chr5_3:40176348-40176367 Msa0811040:CDS 30.0%
TTCAACAGATTTGAACATGT+TGG + chr5_3:40176385-40176404 Msa0811040:CDS 30.0%
TGAAGAGAAAATGGAATAGT+AGG + chr5_3:40176468-40176487 Msa0811040:CDS 30.0%
GAAGAGAAAATGGAATAGTA+GGG + chr5_3:40176469-40176488 Msa0811040:CDS 30.0%
AATTGACCAATCAGAATCAT+CGG - chr5_3:40176573-40176592 None:intergenic 30.0%
TTATCAGTTTCATCATCACT+TGG - chr5_3:40176626-40176645 None:intergenic 30.0%
ACTAAAAGCAACTTACTCAA+TGG + chr5_3:40176704-40176723 Msa0811040:CDS 30.0%
TTGTAATATTGACAATGTGG+AGG - chr5_3:40176925-40176944 None:intergenic 30.0%
TTGCAAAATATTGGTCAAGT+TGG + chr5_3:40176959-40176978 Msa0811040:intron 30.0%
!! TTGTCTCTGAGTTTTTGTTT+GGG + chr5_3:40177215-40177234 Msa0811040:intron 30.0%
ACACATTTCTCATCTGAATT+AGG + chr5_3:40177345-40177364 Msa0811040:intron 30.0%
CACATTTCTCATCTGAATTA+GGG + chr5_3:40177346-40177365 Msa0811040:intron 30.0%
!! TATGTCAGTGGTTAATTTGT+CGG + chr5_3:40177441-40177460 Msa0811040:intron 30.0%
!! TTGAAGGAGTATTATGAAAG+AGG - chr5_3:40177508-40177527 None:intergenic 30.0%
CTTCAATTATGTTCAAGACA+CGG - chr5_3:40177703-40177722 None:intergenic 30.0%
GTGTCTTGAACATAATTGAA+GGG + chr5_3:40177702-40177721 Msa0811040:intron 30.0%
TGTCTTGAACATAATTGAAG+GGG + chr5_3:40177703-40177722 Msa0811040:intron 30.0%
! AAATTTAACTTACATCCCTG+AGG - chr5_3:40177750-40177769 None:intergenic 30.0%
! GCAGCAATGCTATTAATTTT+AGG - chr5_3:40177775-40177794 None:intergenic 30.0%
TTTGAAAATCTTGCTGCATT+TGG + chr5_3:40177870-40177889 Msa0811040:intron 30.0%
AAATGATGAAGATTAGTGTC+AGG - chr5_3:40178044-40178063 None:intergenic 30.0%
GATGTGATGTCAAATATGAT+TGG + chr5_3:40178166-40178185 Msa0811040:three_prime_UTR 30.0%
TGTCAAGAATAAAGCAATTG+TGG + chr5_3:40178232-40178251 Msa0811040:three_prime_UTR 30.0%
! AGAGAAACATGTTTGAAGTT+TGG + chr5_3:40178339-40178358 Msa0811040:three_prime_UTR 30.0%
! TGTTAGCTTAGGATGTGATT+TGG + chr5_3:40175164-40175183 Msa0811040:intron 35.0%
! CGAATGAAGACTCTTTTTGA+AGG - chr5_3:40175328-40175347 None:intergenic 35.0%
ACTTCCATTCCAATCATAGA+TGG - chr5_3:40175592-40175611 None:intergenic 35.0%
TTGCTGGAATGGAGATATTA+AGG + chr5_3:40175611-40175630 Msa0811040:intron 35.0%
TGCTGGAATGGAGATATTAA+GGG + chr5_3:40175612-40175631 Msa0811040:intron 35.0%
!!! GTGTTGGCTATTTTAAGGTT+TGG + chr5_3:40175777-40175796 Msa0811040:intron 35.0%
! GTATTGATCATGTGACCAAT+TGG + chr5_3:40175854-40175873 Msa0811040:intron 35.0%
! CTTGAACTAGAAGCACAAAA+AGG - chr5_3:40176074-40176093 None:intergenic 35.0%
ATCAGGAAATCGAACACTAT+TGG - chr5_3:40176166-40176185 None:intergenic 35.0%
CAAGAACCAAGAATCTCAAA+AGG + chr5_3:40176347-40176366 Msa0811040:CDS 35.0%
TTTGAACATGTTGGAATCTG+AGG + chr5_3:40176394-40176413 Msa0811040:CDS 35.0%
TGAGGTAATGAGATTTCCTT+TGG + chr5_3:40176412-40176431 Msa0811040:CDS 35.0%
CATAGGATCATCATCAAGAA+AGG + chr5_3:40176445-40176464 Msa0811040:CDS 35.0%
CAAGAAAGGTGAAGAGAAAA+TGG + chr5_3:40176459-40176478 Msa0811040:CDS 35.0%
! GATGATTCTGATTGGTCAAT+TGG + chr5_3:40176572-40176591 Msa0811040:CDS 35.0%
! ATTCTGATTGGTCAATTGGA+TGG + chr5_3:40176576-40176595 Msa0811040:CDS 35.0%
CCATAATCTCTTCCATAACA+AGG - chr5_3:40176668-40176687 None:intergenic 35.0%
! CCTTGTTATGGAAGAGATTA+TGG + chr5_3:40176665-40176684 Msa0811040:CDS 35.0%
ATTGGAGTAGATACTCTAGT+TGG + chr5_3:40176867-40176886 Msa0811040:intron 35.0%
GGAGTAAATGCTCAAATTGT+AGG - chr5_3:40177143-40177162 None:intergenic 35.0%
AGCATTTACTCCCTTGAATT+GGG + chr5_3:40177151-40177170 Msa0811040:intron 35.0%
AACAGTTCAACCCAATTCAA+GGG - chr5_3:40177164-40177183 None:intergenic 35.0%
! GTTGTCTCTGAGTTTTTGTT+TGG + chr5_3:40177214-40177233 Msa0811040:intron 35.0%
ATAAGCATACTTCAATGGAG+TGG - chr5_3:40177322-40177341 None:intergenic 35.0%
GTGCTATAAGCATACTTCAA+TGG - chr5_3:40177327-40177346 None:intergenic 35.0%
ATAAGCATACTTCAATGGAG+TGG - chr5_3:40177322-40177341 None:intergenic 35.0%
GTGCTATAAGCATACTTCAA+TGG - chr5_3:40177327-40177346 None:intergenic 35.0%
TTTCTATGGGAATATGTCAG+TGG + chr5_3:40177429-40177448 Msa0811040:intron 35.0%
!! ATGTCAGTGGTTAATTTGTC+GGG + chr5_3:40177442-40177461 Msa0811040:intron 35.0%
! TTCATGAAAGTGTAGCCTAA+TGG - chr5_3:40177542-40177561 None:intergenic 35.0%
! ATAGCTTCTAAAAAGCAGAG+GGG - chr5_3:40177662-40177681 None:intergenic 35.0%
! CATAGCTTCTAAAAAGCAGA+GGG - chr5_3:40177663-40177682 None:intergenic 35.0%
! ACATAGCTTCTAAAAAGCAG+AGG - chr5_3:40177664-40177683 None:intergenic 35.0%
TTAGAAGCTATGTATGATCG+AGG + chr5_3:40177671-40177690 Msa0811040:intron 35.0%
TAGAAGCTATGTATGATCGA+GGG + chr5_3:40177672-40177691 Msa0811040:intron 35.0%
CGTGTCTTGAACATAATTGA+AGG + chr5_3:40177701-40177720 Msa0811040:intron 35.0%
! ACTCTGTAGTCTTGAAAGAT+AGG + chr5_3:40177795-40177814 Msa0811040:intron 35.0%
TGCAGAAAGCAAGAAATATG+TGG + chr5_3:40177991-40178010 Msa0811040:intron 35.0%
GCAAGAAATATGTGGAAAAC+TGG + chr5_3:40177999-40178018 Msa0811040:CDS 35.0%
! GGATTTTGTCATGAAGATAC+AGG - chr5_3:40178071-40178090 None:intergenic 35.0%
GACAAAATCCTCTGATCTTA+AGG + chr5_3:40178081-40178100 Msa0811040:three_prime_UTR 35.0%
! ATTTGTTGCCTTAAGATCAG+AGG - chr5_3:40178092-40178111 None:intergenic 35.0%
! CTTTGAGAATCACAACAATG+TGG + chr5_3:40178302-40178321 Msa0811040:three_prime_UTR 35.0%
TCACAACAATGTGGTGAAAT+TGG + chr5_3:40178311-40178330 Msa0811040:three_prime_UTR 35.0%
CACAACAATGTGGTGAAATT+GGG + chr5_3:40178312-40178331 Msa0811040:three_prime_UTR 35.0%
!! AGGATGTGATTTGGTTACCT+TGG + chr5_3:40175173-40175192 Msa0811040:intron 40.0%
!! TGTGATTTGGTTACCTTGGT+AGG + chr5_3:40175177-40175196 Msa0811040:intron 40.0%
! ACATGTAGGAAGTCTCGTTT+TGG - chr5_3:40175353-40175372 None:intergenic 40.0%
TTATCATAATTGGGGCTGAG+AGG + chr5_3:40175539-40175558 Msa0811040:intron 40.0%
CAATCATAGATGGCTGGAAA+GGG - chr5_3:40175582-40175601 None:intergenic 40.0%
ATGATTGGAATGGAAGTTGC+TGG + chr5_3:40175595-40175614 Msa0811040:intron 40.0%
GCTGGAATGGAGATATTAAG+GGG + chr5_3:40175613-40175632 Msa0811040:intron 40.0%
CTGGAATGGAGATATTAAGG+GGG + chr5_3:40175614-40175633 Msa0811040:intron 40.0%
GATGTTGCACCTCAACAAAA+AGG - chr5_3:40176144-40176163 None:intergenic 40.0%
TCGACGTAAATAAATGTCGG+TGG + chr5_3:40176283-40176302 Msa0811040:exon 40.0%
!!! GAAGTCCCTTTTGAGATTCT+TGG - chr5_3:40176356-40176375 None:intergenic 40.0%
AATGGAATAGTAGGGAAGAG+AGG + chr5_3:40176477-40176496 Msa0811040:CDS 40.0%
AAGAGAGGAGGAAAGTAGAT+AGG + chr5_3:40176492-40176511 Msa0811040:CDS 40.0%
AGAGAGGAGGAAAGTAGATA+GGG + chr5_3:40176493-40176512 Msa0811040:CDS 40.0%
GTTGTTCTTGTTCCTTCTGA+TGG + chr5_3:40176524-40176543 Msa0811040:CDS 40.0%
! TGATTGGTCAATTGGATGGT+TGG + chr5_3:40176580-40176599 Msa0811040:CDS 40.0%
TCATCATCACTTGGAAAACC+AGG - chr5_3:40176617-40176636 None:intergenic 40.0%
!!! GCAGTTTTGGTTCCTTGTTA+TGG + chr5_3:40176653-40176672 Msa0811040:CDS 40.0%
AGCAACTTACTCAATGGTGT+TGG + chr5_3:40176710-40176729 Msa0811040:CDS 40.0%
TATTGACAATGTGGAGGACT+GGG - chr5_3:40176919-40176938 None:intergenic 40.0%
ATATTGACAATGTGGAGGAC+TGG - chr5_3:40176920-40176939 None:intergenic 40.0%
TCCCTATAAATACCAACCGA+GGG + chr5_3:40177040-40177059 Msa0811040:intron 40.0%
! TCCCTCGGTTGGTATTTATA+GGG - chr5_3:40177044-40177063 None:intergenic 40.0%
TATAAATACCAACCGAGGGA+CGG + chr5_3:40177044-40177063 Msa0811040:intron 40.0%
AGTTAATCAATTCCGTCCCT+CGG - chr5_3:40177059-40177078 None:intergenic 40.0%
GAGCATTTACTCCCTTGAAT+TGG + chr5_3:40177150-40177169 Msa0811040:intron 40.0%
CAACAGTTCAACCCAATTCA+AGG - chr5_3:40177165-40177184 None:intergenic 40.0%
!! TGTCAGTGGTTAATTTGTCG+GGG + chr5_3:40177443-40177462 Msa0811040:intron 40.0%
AATGGTGGTTGGAACATTGA+AGG - chr5_3:40177524-40177543 None:intergenic 40.0%
TCAATGTTCCAACCACCATT+AGG + chr5_3:40177524-40177543 Msa0811040:intron 40.0%
! ATGAAAGTGTAGCCTAATGG+TGG - chr5_3:40177539-40177558 None:intergenic 40.0%
AGAAGCTATGTATGATCGAG+GGG + chr5_3:40177673-40177692 Msa0811040:intron 40.0%
CGTCATTTAAGCATACCTCA+GGG + chr5_3:40177732-40177751 Msa0811040:intron 40.0%
! CTGTAGTCTTGAAAGATAGG+CGG + chr5_3:40177798-40177817 Msa0811040:intron 40.0%
TGACAATGTCTTCTCCTCAT+AGG - chr5_3:40178217-40178236 None:intergenic 40.0%
TTTGGTTACCTTGGTAGGTG+AGG + chr5_3:40175182-40175201 Msa0811040:intron 45.0%
CCAATCATAGATGGCTGGAA+AGG - chr5_3:40175583-40175602 None:intergenic 45.0%
CCTTTCCAGCCATCTATGAT+TGG + chr5_3:40175580-40175599 Msa0811040:intron 45.0%
CCATTCCAATCATAGATGGC+TGG - chr5_3:40175588-40175607 None:intergenic 45.0%
CCAGCCATCTATGATTGGAA+TGG + chr5_3:40175585-40175604 Msa0811040:intron 45.0%
TGGAATGGAAGTTGCTGGAA+TGG + chr5_3:40175600-40175619 Msa0811040:intron 45.0%
AAAATTGAGGCCCATCCTTG+AGG + chr5_3:40175691-40175710 Msa0811040:intron 45.0%
AAATTGAGGCCCATCCTTGA+GGG + chr5_3:40175692-40175711 Msa0811040:intron 45.0%
ACAAACAAATCCTCACCCAG+GGG - chr5_3:40175759-40175778 None:intergenic 45.0%
CACAAACAAATCCTCACCCA+GGG - chr5_3:40175760-40175779 None:intergenic 45.0%
ACACAAACAAATCCTCACCC+AGG - chr5_3:40175761-40175780 None:intergenic 45.0%
! GGGTGAGGATTTGTTTGTGT+TGG + chr5_3:40175761-40175780 Msa0811040:intron 45.0%
TGGCATTCACCAATCTCTCA+TGG + chr5_3:40176303-40176322 Msa0811040:CDS 45.0%
CATTCACCAATCTCTCATGG+TGG + chr5_3:40176306-40176325 Msa0811040:CDS 45.0%
CCATAACCACCATGAGAGAT+TGG - chr5_3:40176315-40176334 None:intergenic 45.0%
CCAATCTCTCATGGTGGTTA+TGG + chr5_3:40176312-40176331 Msa0811040:CDS 45.0%
CCTATGTTTGCTTGCACCAA+AGG - chr5_3:40176431-40176450 None:intergenic 45.0%
! CCTTTGGTGCAAGCAAACAT+AGG + chr5_3:40176428-40176447 Msa0811040:CDS 45.0%
GTTCTTGTTCCTTCTGATGG+TGG + chr5_3:40176527-40176546 Msa0811040:CDS 45.0%
GAAACACATCCACCATCAGA+AGG - chr5_3:40176539-40176558 None:intergenic 45.0%
!! TCTGATGGTGGATGTGTTTC+TGG + chr5_3:40176539-40176558 Msa0811040:CDS 45.0%
!! TGGTGGATGTGTTTCTGGTT+CGG + chr5_3:40176544-40176563 Msa0811040:CDS 45.0%
CGGAATCCGATGATTCTGAT+TGG + chr5_3:40176564-40176583 Msa0811040:CDS 45.0%
ATTGGATGGTTGGAACCTCA+TGG + chr5_3:40176590-40176609 Msa0811040:CDS 45.0%
GTCCCTATAAATACCAACCG+AGG + chr5_3:40177039-40177058 Msa0811040:intron 45.0%
! GTCCCTCGGTTGGTATTTAT+AGG - chr5_3:40177045-40177064 None:intergenic 45.0%
AGCATACTTCAATGGAGTGG+AGG - chr5_3:40177319-40177338 None:intergenic 45.0%
AGCATACTTCAATGGAGTGG+AGG - chr5_3:40177319-40177338 None:intergenic 45.0%
!! GGTTAATTTGTCGGGGAAAG+AGG + chr5_3:40177450-40177469 Msa0811040:intron 45.0%
AAGTGTAGCCTAATGGTGGT+TGG - chr5_3:40177535-40177554 None:intergenic 45.0%
GCGTCATTTAAGCATACCTC+AGG + chr5_3:40177731-40177750 Msa0811040:intron 45.0%
!!! TTTATCTTTTTTAAAAAATT+AGG + chr5_3:40177279-40177298 Msa0811040:intron 5.0%
!!! TTATCTTTTTTAAAAAATTA+GGG + chr5_3:40177280-40177299 Msa0811040:intron 5.0%
TTACCTTGGTAGGTGAGGAC+AGG + chr5_3:40175187-40175206 Msa0811040:intron 50.0%
TACCTTGGTAGGTGAGGACA+GGG + chr5_3:40175188-40175207 Msa0811040:intron 50.0%
TCGGCTCAGGGAATGAAAAG+AGG + chr5_3:40175233-40175252 Msa0811040:intron 50.0%
GGAAAGGGACTTCTAGGCAA+CGG - chr5_3:40175567-40175586 None:intergenic 50.0%
ATGGCTGGAAAGGGACTTCT+AGG - chr5_3:40175573-40175592 None:intergenic 50.0%
GCAAACAGCTCAAACGAGCT+GGG - chr5_3:40175721-40175740 None:intergenic 50.0%
TGCAAACAGCTCAAACGAGC+TGG - chr5_3:40175722-40175741 None:intergenic 50.0%
CTCTCATGGTGGTTATGGAG+TGG + chr5_3:40176317-40176336 Msa0811040:CDS 50.0%
GGAATAGTAGGGAAGAGAGG+AGG + chr5_3:40176480-40176499 Msa0811040:CDS 50.0%
CTTGGAAAACCAGGTCCATG+AGG - chr5_3:40176608-40176627 None:intergenic 50.0%
AATCAATTCCGTCCCTCGGT+TGG - chr5_3:40177055-40177074 None:intergenic 50.0%
AGCCTCCGAATTCTCAGGGA+CGG - chr5_3:40175214-40175233 None:intergenic 55.0%
TCCCTGAGAATTCGGAGGCT+CGG + chr5_3:40175214-40175233 Msa0811040:intron 55.0%
TGGTTGGAACCTCATGGACC+TGG + chr5_3:40176596-40176615 Msa0811040:CDS 55.0%
CAGGGCCGTCCCTGAGAATT+CGG + chr5_3:40175206-40175225 Msa0811040:intron 60.0%
GCCGAGCCTCCGAATTCTCA+GGG - chr5_3:40175218-40175237 None:intergenic 60.0%
AGCCGAGCCTCCGAATTCTC+AGG - chr5_3:40175219-40175238 None:intergenic 60.0%
AGAATTCGGAGGCTCGGCTC+AGG + chr5_3:40175220-40175239 Msa0811040:intron 60.0%
GAATTCGGAGGCTCGGCTCA+GGG + chr5_3:40175221-40175240 Msa0811040:intron 60.0%
TTGAGGCCCATCCTTGAGGG+AGG + chr5_3:40175695-40175714 Msa0811040:intron 60.0%
TGAGCTGTTTGCACCCCCTC+AGG + chr5_3:40175729-40175748 Msa0811040:intron 60.0%
GAGCTGTTTGCACCCCCTCA+GGG + chr5_3:40175730-40175749 Msa0811040:intron 60.0%
GGCCCTGTCCTCACCTACCA+AGG - chr5_3:40175193-40175212 None:intergenic 65.0%
GGCCGTCCCTGAGAATTCGG+AGG + chr5_3:40175209-40175228 Msa0811040:intron 65.0%
GCTGGGCCTCCCTCAAGGAT+GGG - chr5_3:40175704-40175723 None:intergenic 65.0%
AGCTGGGCCTCCCTCAAGGA+TGG - chr5_3:40175705-40175724 None:intergenic 65.0%
AACGAGCTGGGCCTCCCTCA+AGG - chr5_3:40175709-40175728 None:intergenic 65.0%
!! TCACCCAGGGGCGTCCCTGA+GGG - chr5_3:40175747-40175766 None:intergenic 70.0%
ACCCCCTCAGGGACGCCCCT+GGG + chr5_3:40175741-40175760 Msa0811040:intron 75.0%
!! ACCCAGGGGCGTCCCTGAGG+GGG - chr5_3:40175745-40175764 None:intergenic 75.0%
!! CACCCAGGGGCGTCCCTGAG+GGG - chr5_3:40175746-40175765 None:intergenic 75.0%
!! CTCACCCAGGGGCGTCCCTG+AGG - chr5_3:40175748-40175767 None:intergenic 75.0%
CTCAGGGACGCCCCTGGGTG+AGG + chr5_3:40175746-40175765 Msa0811040:intron 75.0%
! CACCCCCTCAGGGACGCCCC+TGG + chr5_3:40175740-40175759 Msa0811040:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 40174755 40178514 40174755 ID=Msa0811040;Name=Msa0811040
chr5_3 mRNA 40174755 40178514 40174755 ID=Msa0811040-mRNA-1;Parent=Msa0811040;Name=Msa0811040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=187|1|1|1|0.5|0.33|3|469|170
chr5_3 exon 40174755 40174911 40174755 ID=Msa0811040-mRNA-1:exon:12266;Parent=Msa0811040-mRNA-1
chr5_3 exon 40176266 40176758 40176266 ID=Msa0811040-mRNA-1:exon:12267;Parent=Msa0811040-mRNA-1
chr5_3 exon 40177996 40178514 40177996 ID=Msa0811040-mRNA-1:exon:12268;Parent=Msa0811040-mRNA-1
chr5_3 five_prime_UTR 40174755 40174911 40174755 ID=Msa0811040-mRNA-1:five_prime_utr;Parent=Msa0811040-mRNA-1
chr5_3 five_prime_UTR 40176266 40176295 40176266 ID=Msa0811040-mRNA-1:five_prime_utr;Parent=Msa0811040-mRNA-1
chr5_3 CDS 40176296 40176758 40176296 ID=Msa0811040-mRNA-1:cds;Parent=Msa0811040-mRNA-1
chr5_3 CDS 40177996 40178045 40177996 ID=Msa0811040-mRNA-1:cds;Parent=Msa0811040-mRNA-1
chr5_3 three_prime_UTR 40178046 40178514 40178046 ID=Msa0811040-mRNA-1:three_prime_utr;Parent=Msa0811040-mRNA-1
Gene Sequence

>Msa0811040

ATGTCGGTGGCATTCACCAATCTCTCATGGTGGTTATGGAGTGGAAAACATCAAGAACCAAGAATCTCAAAAGGGACTTCAATAAATTCTTCAACAGATTTGAACATGTTGGAATCTGAGGTAATGAGATTTCCTTTGGTGCAAGCAAACATAGGATCATCATCAAGAAAGGTGAAGAGAAAATGGAATAGTAGGGAAGAGAGGAGGAAAGTAGATAGGGAATATGATGTTGTTCTTGTTCCTTCTGATGGTGGATGTGTTTCTGGTTCGGAATCCGATGATTCTGATTGGTCAATTGGATGGTTGGAACCTCATGGACCTGGTTTTCCAAGTGATGATGAAACTGATAATAGTTTTGCAGTTTTGGTTCCTTGTTATGGAAGAGATTATGGTAGAATTGAAGAAGATACTAAAAGCAACTTACTCAATGGTGTTGGACATTTTTTAGATAGTTATTCTGATGAAAGCAAGAAATATGTGGAAAACTGGCTATCTTCTATTCGAAATACCTGA

Protein sequence

>Msa0811040

MSVAFTNLSWWLWSGKHQEPRISKGTSINSSTDLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERRKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIEEDTKSNLLNGVGHFLDSYSDESKKYVENWLSSIRNT*