AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0244780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244780 MtrunA17_Chr2g0285451 100.000 69 0 0 1 69 1 69 1.17e-44 137
Msa0244780 MtrunA17_Chr4g0033761 94.203 69 4 0 1 69 1 69 3.14e-42 131
Msa0244780 MtrunA17_Chr8g0376751 89.855 69 7 0 1 69 1 69 6.17e-40 125
Msa0244780 MtrunA17_Chr7g0216191 86.957 69 9 0 1 69 1 69 3.37e-37 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0244780 AT2G43460.1 91.304 69 6 0 1 69 1 69 6.97e-41 128
Msa0244780 AT3G59540.1 91.304 69 6 0 1 69 1 69 6.97e-41 128

Find 39 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACGAAAACGTTTAGGATT+AGG 0.264287 2_2:-23538828 Msa0244780:five_prime_UTR
TTCTCTCCATTTCATCCATT+TGG 0.273233 2_2:+23536838 None:intergenic
TAAGCAAATCAACGAGATTA+AGG 0.294566 2_2:-23537726 Msa0244780:CDS
TTCAAGACCTTTAGAGGTAT+TGG 0.299687 2_2:-23536985 Msa0244780:exon
TTTGTTTCTGTGATAAGTTT+TGG 0.304054 2_2:-23536662 Msa0244780:three_prime_UTR
ATCTCTCCAAATGGATGAAA+TGG 0.308166 2_2:-23536844 Msa0244780:three_prime_UTR
TACGAAAACGTTTAGGATTA+GGG 0.309907 2_2:-23538827 Msa0244780:five_prime_UTR
TGAGTGTTCAAGACCTTTAG+AGG 0.372905 2_2:-23536991 Msa0244780:exon
AAAGAACTACGAAAACGTTT+AGG 0.375594 2_2:-23538834 None:intergenic
TGACCTCGCATCCTTCCTTC+TGG 0.376233 2_2:+23537688 None:intergenic
TTGAGATTGTAGCCAGGAAA+TGG 0.416064 2_2:-23536780 Msa0244780:three_prime_UTR
TGGAGAGATATAGATCCATT+TGG 0.428839 2_2:+23536858 None:intergenic
TGGATCTATATCTCTCCAAA+TGG 0.457727 2_2:-23536853 Msa0244780:three_prime_UTR
TTCTCATCCAATACCTCTAA+AGG 0.468641 2_2:+23536978 None:intergenic
CTCACTGCCTCTTGCAACAA+TGG 0.469145 2_2:-23538767 Msa0244780:intron
GAGTTAAGATCCTCTCCATT+TGG 0.475407 2_2:+23536813 None:intergenic
AGTGAGAATCAAGAGGAGTA+AGG 0.485084 2_2:-23537666 Msa0244780:CDS
AGGTATTGGATGAGAAATCA+AGG 0.495732 2_2:-23536971 Msa0244780:three_prime_UTR
TAAGGATGTGGTTAAGTTCA+AGG 0.499148 2_2:-23537648 Msa0244780:CDS
AAGGGTAAAGATCCTCCAAA+TGG 0.506011 2_2:-23536873 Msa0244780:three_prime_UTR
GAAATGGAGAGAATACCAAA+TGG 0.517514 2_2:-23536828 Msa0244780:three_prime_UTR
ATGTGGTTAAGTTCAAGGTC+AGG 0.518401 2_2:-23537643 Msa0244780:CDS
AATCAAGAGGAGTAAGGATG+TGG 0.526249 2_2:-23537660 Msa0244780:CDS
ACTAAGTGTGTAGAGGTACT+TGG 0.532503 2_2:+23537616 None:intergenic
TTAATCTCGTTGATTTGCTT+AGG 0.534022 2_2:+23537728 None:intergenic
CCTTCTCACTGCCAGAAGGA+AGG 0.537276 2_2:-23537699 Msa0244780:CDS
TTGAAGCAATCACTTCCTCC+AGG 0.552717 2_2:-23537566 Msa0244780:intron
AGAGATATAGATCCATTTGG+AGG 0.564353 2_2:+23536861 None:intergenic
CCTTCCTTCTGGCAGTGAGA+AGG 0.565796 2_2:+23537699 None:intergenic
TTTGTGAGTTGATCTTGTAA+GGG 0.574402 2_2:-23536891 Msa0244780:three_prime_UTR
AAAATCACCATTGTTGCAAG+AGG 0.583889 2_2:+23538760 None:intergenic
ATTTCCTTCTCACTGCCAGA+AGG 0.584170 2_2:-23537703 Msa0244780:CDS
TGTAACTTGAGATTGTAGCC+AGG 0.592891 2_2:-23536786 Msa0244780:three_prime_UTR
CGAGGTCAGTGAGAATCAAG+AGG 0.618562 2_2:-23537673 Msa0244780:CDS
GGAGAGAATACCAAATGGAG+AGG 0.623091 2_2:-23536823 Msa0244780:three_prime_UTR
CTGCCAGAAGGAAGGATGCG+AGG 0.654921 2_2:-23537691 Msa0244780:CDS
CAAACACACTAAGTGTGTAG+AGG 0.657075 2_2:+23537609 None:intergenic
TTGGATGAGAAATCAAGGAG+AGG 0.695988 2_2:-23536966 Msa0244780:three_prime_UTR
TTAGGATTAGGGTTTATCAG+CGG 0.714795 2_2:-23538816 Msa0244780:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAAAAAATAAAAT+GGG + chr2_2:23536858-23536877 None:intergenic 0.0%
!! AAATTAATAAAAAAATAAAA+TGG + chr2_2:23536859-23536878 None:intergenic 0.0%
!! AATTAATAAAAAAATAAAAT+GGG + chr2_2:23536858-23536877 None:intergenic 0.0%
!! AAATTAATAAAAAAATAAAA+TGG + chr2_2:23536859-23536878 None:intergenic 0.0%
!! AATTGAGAAATTAGAAAAAA+GGG + chr2_2:23536731-23536750 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG - chr2_2:23536796-23536815 Msa0244780:three_prime_UTR 15.0%
!! AATAATTCAACATAAAATCA+CGG + chr2_2:23536923-23536942 None:intergenic 15.0%
!! AACAATAACAAACAAAAATT+TGG + chr2_2:23537633-23537652 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG - chr2_2:23537938-23537957 Msa0244780:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG - chr2_2:23538125-23538144 Msa0244780:intron 15.0%
!! AATTGAGAAATTAGAAAAAA+GGG + chr2_2:23536731-23536750 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG - chr2_2:23536796-23536815 Msa0244780:three_prime_UTR 15.0%
!! AATAATTCAACATAAAATCA+CGG + chr2_2:23536923-23536942 None:intergenic 15.0%
!! AACAATAACAAACAAAAATT+TGG + chr2_2:23537633-23537652 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG - chr2_2:23537938-23537957 Msa0244780:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG - chr2_2:23538125-23538144 Msa0244780:intron 15.0%
!! ATTGAGAAATTAGAAAAAAG+GGG + chr2_2:23536730-23536749 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG + chr2_2:23536732-23536751 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG - chr2_2:23537003-23537022 Msa0244780:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG - chr2_2:23537004-23537023 Msa0244780:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG - chr2_2:23537052-23537071 Msa0244780:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG - chr2_2:23537408-23537427 Msa0244780:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG - chr2_2:23537977-23537996 Msa0244780:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG + chr2_2:23538286-23538305 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG + chr2_2:23538296-23538315 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG - chr2_2:23538352-23538371 Msa0244780:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG + chr2_2:23538357-23538376 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG + chr2_2:23538388-23538407 None:intergenic 20.0%
!! ATTGAGAAATTAGAAAAAAG+GGG + chr2_2:23536730-23536749 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG + chr2_2:23536732-23536751 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG - chr2_2:23537003-23537022 Msa0244780:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG - chr2_2:23537004-23537023 Msa0244780:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG - chr2_2:23537052-23537071 Msa0244780:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG - chr2_2:23537408-23537427 Msa0244780:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG - chr2_2:23537977-23537996 Msa0244780:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG + chr2_2:23538286-23538305 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG + chr2_2:23538296-23538315 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG - chr2_2:23538352-23538371 Msa0244780:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG + chr2_2:23538357-23538376 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG + chr2_2:23538388-23538407 None:intergenic 20.0%
! TTGAGAAATTAGAAAAAAGG+GGG + chr2_2:23536729-23536748 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG - chr2_2:23537368-23537387 Msa0244780:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG + chr2_2:23537410-23537429 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG - chr2_2:23537407-23537426 Msa0244780:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG + chr2_2:23538003-23538022 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG + chr2_2:23538004-23538023 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG - chr2_2:23538252-23538271 Msa0244780:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG + chr2_2:23538389-23538408 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG + chr2_2:23538399-23538418 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG - chr2_2:23538712-23538731 Msa0244780:intron 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG - chr2_2:23538731-23538750 Msa0244780:intron 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG - chr2_2:23538794-23538813 Msa0244780:five_prime_UTR 25.0%
! TTGAGAAATTAGAAAAAAGG+GGG + chr2_2:23536729-23536748 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG - chr2_2:23537368-23537387 Msa0244780:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG + chr2_2:23537410-23537429 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG - chr2_2:23537407-23537426 Msa0244780:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG + chr2_2:23538003-23538022 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG + chr2_2:23538004-23538023 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG - chr2_2:23538252-23538271 Msa0244780:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG + chr2_2:23538389-23538408 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG + chr2_2:23538399-23538418 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG - chr2_2:23538712-23538731 Msa0244780:intron 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG - chr2_2:23538731-23538750 Msa0244780:intron 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG - chr2_2:23538794-23538813 Msa0244780:five_prime_UTR 25.0%
! TACGAAAACGTTTAGGATTA+GGG - chr2_2:23536629-23536648 Msa0244780:three_prime_UTR 30.0%
AAAAATAAGCCAATCGAAAC+GGG + chr2_2:23537079-23537098 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG + chr2_2:23537080-23537099 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG - chr2_2:23537255-23537274 Msa0244780:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG + chr2_2:23537272-23537291 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG - chr2_2:23537270-23537289 Msa0244780:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG + chr2_2:23537470-23537489 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG + chr2_2:23537504-23537523 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG + chr2_2:23537505-23537524 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG + chr2_2:23537731-23537750 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG - chr2_2:23537730-23537749 Msa0244780:CDS 30.0%
AATTGAACTAGTTGAACTGT+TGG + chr2_2:23537967-23537986 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG + chr2_2:23538241-23538260 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG + chr2_2:23538253-23538272 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG + chr2_2:23538278-23538297 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG + chr2_2:23538279-23538298 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG - chr2_2:23538309-23538328 Msa0244780:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG - chr2_2:23538339-23538358 Msa0244780:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG - chr2_2:23538564-23538583 Msa0244780:intron 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG - chr2_2:23538565-23538584 Msa0244780:intron 30.0%
TCATTACAAAAACCATTTCC+TGG + chr2_2:23538691-23538710 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG - chr2_2:23538730-23538749 Msa0244780:intron 30.0%
! TACGAAAACGTTTAGGATTA+GGG - chr2_2:23536629-23536648 Msa0244780:three_prime_UTR 30.0%
AAAAATAAGCCAATCGAAAC+GGG + chr2_2:23537079-23537098 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG + chr2_2:23537080-23537099 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG - chr2_2:23537255-23537274 Msa0244780:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG + chr2_2:23537272-23537291 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG - chr2_2:23537270-23537289 Msa0244780:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG + chr2_2:23537470-23537489 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG + chr2_2:23537504-23537523 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG + chr2_2:23537505-23537524 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG + chr2_2:23537731-23537750 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG - chr2_2:23537730-23537749 Msa0244780:CDS 30.0%
AATTGAACTAGTTGAACTGT+TGG + chr2_2:23537967-23537986 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG + chr2_2:23538241-23538260 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG + chr2_2:23538253-23538272 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG + chr2_2:23538278-23538297 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG + chr2_2:23538279-23538298 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG - chr2_2:23538309-23538328 Msa0244780:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG - chr2_2:23538339-23538358 Msa0244780:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG - chr2_2:23538564-23538583 Msa0244780:intron 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG - chr2_2:23538565-23538584 Msa0244780:intron 30.0%
TCATTACAAAAACCATTTCC+TGG + chr2_2:23538691-23538710 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG - chr2_2:23538730-23538749 Msa0244780:intron 30.0%
! CTACGAAAACGTTTAGGATT+AGG - chr2_2:23536628-23536647 Msa0244780:three_prime_UTR 35.0%
TTAGGATTAGGGTTTATCAG+CGG - chr2_2:23536640-23536659 Msa0244780:three_prime_UTR 35.0%
AAAATCACCATTGTTGCAAG+AGG + chr2_2:23536699-23536718 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG - chr2_2:23536937-23536956 Msa0244780:three_prime_UTR 35.0%
TTATTCGATGCTAAGAAGCT+GGG - chr2_2:23536938-23536957 Msa0244780:three_prime_UTR 35.0%
TAAGGATGTGGTTAAGTTCA+AGG - chr2_2:23537808-23537827 Msa0244780:intron 35.0%
TAAACACTTGTGAGACTGTT+TGG + chr2_2:23538216-23538235 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG - chr2_2:23538440-23538459 Msa0244780:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG - chr2_2:23538471-23538490 Msa0244780:intron 35.0%
TTCTCATCCAATACCTCTAA+AGG + chr2_2:23538481-23538500 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG - chr2_2:23538485-23538504 Msa0244780:intron 35.0%
AGAGATATAGATCCATTTGG+AGG + chr2_2:23538598-23538617 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG + chr2_2:23538601-23538620 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG - chr2_2:23538603-23538622 Msa0244780:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_2:23538612-23538631 Msa0244780:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_2:23538621-23538640 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG - chr2_2:23538628-23538647 Msa0244780:intron 35.0%
! CTACGAAAACGTTTAGGATT+AGG - chr2_2:23536628-23536647 Msa0244780:three_prime_UTR 35.0%
TTAGGATTAGGGTTTATCAG+CGG - chr2_2:23536640-23536659 Msa0244780:three_prime_UTR 35.0%
AAAATCACCATTGTTGCAAG+AGG + chr2_2:23536699-23536718 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG - chr2_2:23536937-23536956 Msa0244780:three_prime_UTR 35.0%
TTATTCGATGCTAAGAAGCT+GGG - chr2_2:23536938-23536957 Msa0244780:three_prime_UTR 35.0%
TAAGGATGTGGTTAAGTTCA+AGG - chr2_2:23537808-23537827 Msa0244780:intron 35.0%
TAAACACTTGTGAGACTGTT+TGG + chr2_2:23538216-23538235 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG - chr2_2:23538440-23538459 Msa0244780:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG - chr2_2:23538471-23538490 Msa0244780:intron 35.0%
TTCTCATCCAATACCTCTAA+AGG + chr2_2:23538481-23538500 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG - chr2_2:23538485-23538504 Msa0244780:intron 35.0%
AGAGATATAGATCCATTTGG+AGG + chr2_2:23538598-23538617 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG + chr2_2:23538601-23538620 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG - chr2_2:23538603-23538622 Msa0244780:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_2:23538612-23538631 Msa0244780:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_2:23538621-23538640 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG - chr2_2:23538628-23538647 Msa0244780:intron 35.0%
CTAAGAAGCTGGGTTAAGTT+AGG - chr2_2:23536948-23536967 Msa0244780:three_prime_UTR 40.0%
AGTGAGAATCAAGAGGAGTA+AGG - chr2_2:23537790-23537809 Msa0244780:intron 40.0%
AATCAAGAGGAGTAAGGATG+TGG - chr2_2:23537796-23537815 Msa0244780:intron 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG - chr2_2:23537813-23537832 Msa0244780:intron 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG + chr2_2:23537843-23537862 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG + chr2_2:23537850-23537869 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG + chr2_2:23537911-23537930 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG + chr2_2:23537958-23537977 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG - chr2_2:23538465-23538484 Msa0244780:intron 40.0%
TTGGATGAGAAATCAAGGAG+AGG - chr2_2:23538490-23538509 Msa0244780:intron 40.0%
AAGGGTAAAGATCCTCCAAA+TGG - chr2_2:23538583-23538602 Msa0244780:intron 40.0%
GAGTTAAGATCCTCTCCATT+TGG + chr2_2:23538646-23538665 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG - chr2_2:23538670-23538689 Msa0244780:intron 40.0%
TTGAGATTGTAGCCAGGAAA+TGG - chr2_2:23538676-23538695 Msa0244780:intron 40.0%
CTAAGAAGCTGGGTTAAGTT+AGG - chr2_2:23536948-23536967 Msa0244780:three_prime_UTR 40.0%
AGTGAGAATCAAGAGGAGTA+AGG - chr2_2:23537790-23537809 Msa0244780:intron 40.0%
AATCAAGAGGAGTAAGGATG+TGG - chr2_2:23537796-23537815 Msa0244780:intron 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG - chr2_2:23537813-23537832 Msa0244780:intron 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG + chr2_2:23537843-23537862 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG + chr2_2:23537850-23537869 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG + chr2_2:23537911-23537930 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG + chr2_2:23537958-23537977 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG - chr2_2:23538465-23538484 Msa0244780:intron 40.0%
TTGGATGAGAAATCAAGGAG+AGG - chr2_2:23538490-23538509 Msa0244780:intron 40.0%
AAGGGTAAAGATCCTCCAAA+TGG - chr2_2:23538583-23538602 Msa0244780:intron 40.0%
GAGTTAAGATCCTCTCCATT+TGG + chr2_2:23538646-23538665 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG - chr2_2:23538670-23538689 Msa0244780:intron 40.0%
TTGAGATTGTAGCCAGGAAA+TGG - chr2_2:23538676-23538695 Msa0244780:intron 40.0%
! GATTTAGGACCCGTTTCGAT+TGG - chr2_2:23537067-23537086 Msa0244780:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG - chr2_2:23537488-23537507 Msa0244780:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG - chr2_2:23537753-23537772 Msa0244780:intron 45.0%
TTGAAGCAATCACTTCCTCC+AGG - chr2_2:23537890-23537909 Msa0244780:intron 45.0%
AAATCCAACTACAGACCTGG+AGG + chr2_2:23537908-23537927 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG + chr2_2:23538274-23538293 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG - chr2_2:23538633-23538652 Msa0244780:intron 45.0%
! GATTTAGGACCCGTTTCGAT+TGG - chr2_2:23537067-23537086 Msa0244780:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG - chr2_2:23537488-23537507 Msa0244780:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG - chr2_2:23537753-23537772 Msa0244780:intron 45.0%
TTGAAGCAATCACTTCCTCC+AGG - chr2_2:23537890-23537909 Msa0244780:intron 45.0%
AAATCCAACTACAGACCTGG+AGG + chr2_2:23537908-23537927 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG + chr2_2:23538274-23538293 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG - chr2_2:23538633-23538652 Msa0244780:intron 45.0%
CTCACTGCCTCTTGCAACAA+TGG - chr2_2:23536689-23536708 Msa0244780:three_prime_UTR 50.0%
CGAGGTCAGTGAGAATCAAG+AGG - chr2_2:23537783-23537802 Msa0244780:intron 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG - chr2_2:23537901-23537920 Msa0244780:intron 50.0%
CTCACTGCCTCTTGCAACAA+TGG - chr2_2:23536689-23536708 Msa0244780:three_prime_UTR 50.0%
CGAGGTCAGTGAGAATCAAG+AGG - chr2_2:23537783-23537802 Msa0244780:intron 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG - chr2_2:23537901-23537920 Msa0244780:intron 50.0%
CCTTCCTTCTGGCAGTGAGA+AGG + chr2_2:23537760-23537779 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG - chr2_2:23537757-23537776 Msa0244780:intron 55.0%
TGACCTCGCATCCTTCCTTC+TGG + chr2_2:23537771-23537790 None:intergenic 55.0%
CCTTCCTTCTGGCAGTGAGA+AGG + chr2_2:23537760-23537779 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG - chr2_2:23537757-23537776 Msa0244780:intron 55.0%
TGACCTCGCATCCTTCCTTC+TGG + chr2_2:23537771-23537790 None:intergenic 55.0%
CTGCCAGAAGGAAGGATGCG+AGG - chr2_2:23537765-23537784 Msa0244780:intron 60.0%
CTGCCAGAAGGAAGGATGCG+AGG - chr2_2:23537765-23537784 Msa0244780:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 23536628 23538850 23536628 ID=Msa0244780;Name=Msa0244780
chr2_2 mRNA 23536628 23538850 23536628 ID=Msa0244780-mRNA-1;Parent=Msa0244780;Name=Msa0244780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=80|1|1|1|0.5|0.66|3|366|69
chr2_2 exon 23536628 23537016 23536628 ID=Msa0244780-mRNA-1:exon:9017;Parent=Msa0244780-mRNA-1
chr2_2 exon 23537567 23537750 23537567 ID=Msa0244780-mRNA-1:exon:9016;Parent=Msa0244780-mRNA-1
chr2_2 exon 23538768 23538850 23538768 ID=Msa0244780-mRNA-1:exon:9015;Parent=Msa0244780-mRNA-1
chr2_2 five_prime_UTR 23538771 23538850 23538771 ID=Msa0244780-mRNA-1:five_prime_utr;Parent=Msa0244780-mRNA-1
chr2_2 CDS 23538768 23538770 23538768 ID=Msa0244780-mRNA-1:cds;Parent=Msa0244780-mRNA-1
chr2_2 CDS 23537567 23537750 23537567 ID=Msa0244780-mRNA-1:cds;Parent=Msa0244780-mRNA-1
chr2_2 CDS 23536994 23537016 23536994 ID=Msa0244780-mRNA-1:cds;Parent=Msa0244780-mRNA-1
chr2_2 three_prime_UTR 23536628 23536993 23536628 ID=Msa0244780-mRNA-1:three_prime_utr;Parent=Msa0244780-mRNA-1
Gene Sequence

>Msa0244780

ATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACTGCCAGAAGGAAGGATGCGAGGTCAGTGAGAATCAAGAGGAGTAAGGATGTGGTTAAGTTCAAGGTCAGGTGTTCCAAGTACCTCTACACACTTAGTGTGTTTGACGTTGAGAAAGCTGACAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTTTAG

Protein sequence

>Msa0244780

MPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLSVFDVEKADKLKQSLPPGLSVQDL*